Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021927.01.T01 | XP_003607512.1 | 96.203 | 79 | 3 | 0 | 1 | 79 | 1 | 79 | 7.92E-45 | 149 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021927.01.T01 | Q1G309 | 61.972 | 71 | 27 | 0 | 9 | 79 | 3 | 73 | 2.70E-20 | 79.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021927.01.T01 | G7JTY0 | 96.203 | 79 | 3 | 0 | 1 | 79 | 1 | 79 | 3.78e-45 | 149 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048205.01 | MsG0480021927.01 | 0.806352 | 8.575018e-50 | 4.644051e-47 |
MsG0180000091.01 | MsG0480021927.01 | 0.817109 | 3.910086e-52 | 2.821926e-49 |
MsG0180000470.01 | MsG0480021927.01 | 0.833216 | 6.059189e-56 | 6.931874e-53 |
MsG0180000526.01 | MsG0480021927.01 | 0.864437 | 1.216727e-64 | 3.820311e-61 |
MsG0180000550.01 | MsG0480021927.01 | 0.813130 | 2.991066e-51 | 1.936851e-48 |
MsG0180000649.01 | MsG0480021927.01 | 0.839471 | 1.553319e-57 | 2.147301e-54 |
MsG0180000650.01 | MsG0480021927.01 | 0.842009 | 3.358870e-58 | 5.024219e-55 |
MsG0180001063.01 | MsG0480021927.01 | 0.806074 | 9.816267e-50 | 5.278699e-47 |
MsG0180001068.01 | MsG0480021927.01 | 0.808133 | 3.596379e-50 | 2.039916e-47 |
MsG0180001122.01 | MsG0480021927.01 | 0.803558 | 3.291565e-49 | 1.659317e-46 |
MsG0180001663.01 | MsG0480021927.01 | 0.847923 | 8.501903e-60 | 1.534702e-56 |
MsG0180003193.01 | MsG0480021927.01 | 0.827618 | 1.416199e-54 | 1.374205e-51 |
MsG0180003673.01 | MsG0480021927.01 | 0.828246 | 1.000436e-54 | 9.888110e-52 |
MsG0180003686.01 | MsG0480021927.01 | 0.820817 | 5.614000e-53 | 4.489063e-50 |
MsG0180004085.01 | MsG0480021927.01 | 0.810704 | 1.009729e-50 | 6.130018e-48 |
MsG0180004385.01 | MsG0480021927.01 | 0.804976 | 1.668036e-49 | 8.720905e-47 |
MsG0180004462.01 | MsG0480021927.01 | 0.808216 | 3.453029e-50 | 1.962973e-47 |
MsG0180004765.01 | MsG0480021927.01 | 0.837489 | 5.043137e-57 | 6.561438e-54 |
MsG0180004789.01 | MsG0480021927.01 | 0.800179 | 1.626864e-48 | 7.525406e-46 |
MsG0180005279.01 | MsG0480021927.01 | 0.841839 | 3.725108e-58 | 5.542503e-55 |
MsG0180005505.01 | MsG0480021927.01 | 0.851841 | 6.822934e-61 | 1.398829e-57 |
MsG0280010712.01 | MsG0480021927.01 | 0.832759 | 7.867541e-56 | 8.878401e-53 |
MsG0280011032.01 | MsG0480021927.01 | 0.834516 | 2.864467e-56 | 3.407568e-53 |
MsG0280011163.01 | MsG0480021927.01 | 0.849108 | 3.995039e-60 | 7.493667e-57 |
MsG0280011376.01 | MsG0480021927.01 | 0.805102 | 1.569699e-49 | 8.233183e-47 |
MsG0380011531.01 | MsG0480021927.01 | 0.813518 | 2.457737e-51 | 1.608545e-48 |
MsG0380011639.01 | MsG0480021927.01 | 0.815264 | 1.010585e-51 | 6.934095e-49 |
MsG0380011754.01 | MsG0480021927.01 | 0.806366 | 8.519343e-50 | 4.615443e-47 |
MsG0380011759.01 | MsG0480021927.01 | 0.808882 | 2.489505e-50 | 1.440035e-47 |
MsG0380011895.01 | MsG0480021927.01 | 0.801734 | 7.829757e-49 | 3.767168e-46 |
MsG0380012007.01 | MsG0480021927.01 | 0.820405 | 6.978067e-53 | 5.516674e-50 |
MsG0380012161.01 | MsG0480021927.01 | 0.806704 | 7.229579e-50 | 3.950708e-47 |
MsG0380012330.01 | MsG0480021927.01 | 0.800399 | 1.467677e-48 | 6.827214e-46 |
MsG0380012362.01 | MsG0480021927.01 | 0.821386 | 4.150953e-53 | 3.372124e-50 |
MsG0380013176.01 | MsG0480021927.01 | 0.802274 | 6.062423e-49 | 2.957367e-46 |
MsG0380013436.01 | MsG0480021927.01 | 0.823866 | 1.099862e-53 | 9.585740e-51 |
MsG0380013853.01 | MsG0480021927.01 | 0.811023 | 8.613605e-51 | 5.274215e-48 |
MsG0380014251.01 | MsG0480021927.01 | 0.814570 | 1.440179e-51 | 9.698193e-49 |
MsG0380014288.01 | MsG0480021927.01 | 0.801560 | 8.499368e-49 | 4.071464e-46 |
MsG0380014573.01 | MsG0480021927.01 | 0.842514 | 2.469279e-58 | 3.752976e-55 |
MsG0380014727.01 | MsG0480021927.01 | 0.806567 | 7.725599e-50 | 4.207115e-47 |
MsG0380014894.01 | MsG0480021927.01 | 0.842013 | 3.351124e-58 | 5.013305e-55 |
MsG0380014902.01 | MsG0480021927.01 | 0.866176 | 3.451242e-65 | 1.152478e-61 |
MsG0480018603.01 | MsG0480021927.01 | 0.830301 | 3.171262e-55 | 3.327881e-52 |
MsG0480019335.01 | MsG0480021927.01 | 0.802170 | 6.371278e-49 | 3.099701e-46 |
MsG0480019435.01 | MsG0480021927.01 | 0.818820 | 1.605912e-52 | 1.214782e-49 |
MsG0480020839.01 | MsG0480021927.01 | 0.837436 | 5.204763e-57 | 6.760390e-54 |
MsG0480020887.01 | MsG0480021927.01 | 0.848656 | 5.332394e-60 | 9.855336e-57 |
MsG0480020964.01 | MsG0480021927.01 | 0.801979 | 6.973816e-49 | 3.376212e-46 |
MsG0480021869.01 | MsG0480021927.01 | 0.803695 | 3.083157e-49 | 1.559644e-46 |
MsG0480021916.01 | MsG0480021927.01 | 0.802522 | 5.391753e-49 | 2.646646e-46 |
MsG0480021917.01 | MsG0480021927.01 | 0.801240 | 9.885044e-49 | 4.697300e-46 |
MsG0480021927.01 | MsG0480022259.01 | 0.806924 | 6.494980e-50 | 3.569547e-47 |
MsG0480021927.01 | MsG0480022262.01 | 0.806719 | 7.177520e-50 | 3.923811e-47 |
MsG0480021927.01 | MsG0480022575.01 | 0.876342 | 1.507178e-68 | 7.280601e-65 |
MsG0480021927.01 | MsG0480022707.01 | 0.806903 | 6.562866e-50 | 3.604866e-47 |
MsG0480021927.01 | MsG0480022827.01 | 0.809353 | 1.973740e-50 | 1.156275e-47 |
MsG0480021927.01 | MsG0480023248.01 | 0.834571 | 2.774722e-56 | 3.306316e-53 |
MsG0480021927.01 | MsG0480023251.01 | 0.814010 | 1.914773e-51 | 1.269992e-48 |
MsG0480021927.01 | MsG0480023636.01 | 0.815208 | 1.039843e-51 | 7.123606e-49 |
MsG0480021927.01 | MsG0480023638.01 | 0.826900 | 2.104160e-54 | 1.999782e-51 |
MsG0480021927.01 | MsG0480023654.01 | 0.831583 | 1.537620e-55 | 1.675911e-52 |
MsG0480021927.01 | MsG0580024038.01 | 0.804997 | 1.651208e-49 | 8.637282e-47 |
MsG0480021927.01 | MsG0580024073.01 | 0.823495 | 1.343320e-53 | 1.158547e-50 |
MsG0480021927.01 | MsG0580024114.01 | 0.808890 | 2.479222e-50 | 1.434388e-47 |
MsG0480021927.01 | MsG0580024363.01 | -0.828835 | 7.207126e-55 | 7.246056e-52 |
MsG0480021927.01 | MsG0580024853.01 | 0.807124 | 5.891743e-50 | 3.254751e-47 |
MsG0480021927.01 | MsG0580024945.01 | 0.805289 | 1.434630e-49 | 7.560855e-47 |
MsG0480021927.01 | MsG0580025022.01 | 0.801276 | 9.719068e-49 | 4.622619e-46 |
MsG0480021927.01 | MsG0580025723.01 | 0.800843 | 1.191513e-48 | 5.605419e-46 |
MsG0480021927.01 | MsG0580025739.01 | 0.806279 | 8.885569e-50 | 4.803342e-47 |
MsG0480021927.01 | MsG0580025758.01 | 0.814848 | 1.250278e-51 | 8.482503e-49 |
MsG0480021927.01 | MsG0580027401.01 | 0.814135 | 1.797747e-51 | 1.196404e-48 |
MsG0480021927.01 | MsG0580027773.01 | 0.846979 | 1.544776e-59 | 2.705544e-56 |
MsG0480021927.01 | MsG0580027833.01 | 0.827015 | 1.975046e-54 | 1.883270e-51 |
MsG0480021927.01 | MsG0580027922.01 | 0.822810 | 1.940567e-53 | 1.641572e-50 |
MsG0480021927.01 | MsG0580028527.01 | 0.823714 | 1.194005e-53 | 1.036282e-50 |
MsG0480021927.01 | MsG0580029554.01 | 0.801113 | 1.049330e-48 | 4.970473e-46 |
MsG0480021927.01 | MsG0680030303.01 | 0.838426 | 2.896806e-57 | 3.878600e-54 |
MsG0480021927.01 | MsG0680030415.01 | 0.802043 | 6.764155e-49 | 3.280222e-46 |
MsG0480021927.01 | MsG0680030629.01 | 0.829620 | 4.649928e-55 | 4.784371e-52 |
MsG0480021927.01 | MsG0680030886.01 | 0.801105 | 1.053431e-48 | 4.988994e-46 |
MsG0480021927.01 | MsG0680030992.01 | 0.813413 | 2.592034e-51 | 1.691624e-48 |
MsG0480021927.01 | MsG0680031459.01 | 0.844742 | 6.261851e-59 | 1.020719e-55 |
MsG0480021927.01 | MsG0680032058.01 | 0.808120 | 3.619667e-50 | 2.052414e-47 |
MsG0480021927.01 | MsG0680032157.01 | 0.805482 | 1.306995e-49 | 6.922451e-47 |
MsG0480021927.01 | MsG0680032460.01 | -0.812718 | 3.682165e-51 | 2.358530e-48 |
MsG0480021927.01 | MsG0680032801.01 | 0.836696 | 8.045953e-57 | 1.021854e-53 |
MsG0480021927.01 | MsG0680032996.01 | 0.831770 | 1.382803e-55 | 1.515664e-52 |
MsG0480021927.01 | MsG0680034782.01 | 0.812361 | 4.406427e-51 | 2.796006e-48 |
MsG0480021927.01 | MsG0680035444.01 | 0.840760 | 7.159558e-58 | 1.030083e-54 |
MsG0480021927.01 | MsG0680035445.01 | 0.812378 | 4.369145e-51 | 2.773523e-48 |
MsG0480021927.01 | MsG0680035455.01 | 0.838096 | 3.522359e-57 | 4.668576e-54 |
MsG0480021927.01 | MsG0680035457.01 | 0.805851 | 1.093573e-49 | 5.847582e-47 |
MsG0480021927.01 | MsG0680035694.01 | 0.800734 | 1.253961e-48 | 5.882819e-46 |
MsG0480021927.01 | MsG0680035844.01 | 0.824676 | 7.094818e-54 | 6.328390e-51 |
MsG0480021927.01 | MsG0780035958.01 | 0.803513 | 3.363340e-49 | 1.693479e-46 |
MsG0480021927.01 | MsG0780036080.01 | 0.821989 | 3.010937e-53 | 2.487952e-50 |
MsG0480021927.01 | MsG0780037859.01 | 0.816906 | 4.342515e-52 | 3.116721e-49 |
MsG0480021927.01 | MsG0780038113.01 | 0.811766 | 5.939975e-51 | 3.708826e-48 |
MsG0480021927.01 | MsG0780038386.01 | 0.803525 | 3.343634e-49 | 1.684127e-46 |
MsG0480021927.01 | MsG0780038401.01 | 0.839638 | 1.406176e-57 | 1.953788e-54 |
MsG0480021927.01 | MsG0780038439.01 | 0.806148 | 9.468373e-50 | 5.101311e-47 |
MsG0480021927.01 | MsG0780038825.01 | 0.835241 | 1.881751e-56 | 2.287753e-53 |
MsG0480021927.01 | MsG0780038827.01 | 0.829180 | 5.945480e-55 | 6.039557e-52 |
MsG0480021927.01 | MsG0780038828.01 | 0.846876 | 1.648387e-59 | 2.877387e-56 |
MsG0480021927.01 | MsG0780038833.01 | 0.849707 | 2.720740e-60 | 5.202864e-57 |
MsG0480021927.01 | MsG0780038906.01 | 0.802873 | 4.562365e-49 | 2.259805e-46 |
MsG0480021927.01 | MsG0780039252.01 | 0.819868 | 9.265577e-53 | 7.216244e-50 |
MsG0480021927.01 | MsG0780039607.01 | 0.803572 | 3.270377e-49 | 1.649213e-46 |
MsG0480021927.01 | MsG0780039832.01 | 0.805739 | 1.154061e-49 | 6.153447e-47 |
MsG0480021927.01 | MsG0780039875.01 | 0.817151 | 3.826274e-52 | 2.764699e-49 |
MsG0480021927.01 | MsG0780040576.01 | -0.817413 | 3.340730e-52 | 2.431317e-49 |
MsG0480021927.01 | MsG0780041456.01 | 0.811096 | 8.304003e-51 | 5.094167e-48 |
MsG0480021927.01 | MsG0780041475.01 | 0.851104 | 1.102857e-60 | 2.208104e-57 |
MsG0480021927.01 | MsG0880042031.01 | 0.814776 | 1.296654e-51 | 8.779935e-49 |
MsG0480021927.01 | MsG0880042053.01 | 0.808915 | 2.448865e-50 | 1.417797e-47 |
MsG0480021927.01 | MsG0880042118.01 | 0.844421 | 7.641097e-59 | 1.232921e-55 |
MsG0480021927.01 | MsG0880042161.01 | 0.852693 | 3.903886e-61 | 8.224897e-58 |
MsG0480021927.01 | MsG0880042247.01 | 0.819088 | 1.395613e-52 | 1.063571e-49 |
MsG0480021927.01 | MsG0880042434.01 | 0.819528 | 1.107561e-52 | 8.544969e-50 |
MsG0480021927.01 | MsG0880042611.01 | 0.809540 | 1.799330e-50 | 1.059308e-47 |
MsG0480021927.01 | MsG0880042656.01 | 0.842952 | 1.887995e-58 | 2.908708e-55 |
MsG0480021927.01 | MsG0880042965.01 | 0.801218 | 9.986846e-49 | 4.742979e-46 |
MsG0480021927.01 | MsG0880042966.01 | 0.801256 | 9.811468e-49 | 4.664185e-46 |
MsG0480021927.01 | MsG0880043144.01 | 0.838524 | 2.732006e-57 | 3.668813e-54 |
MsG0480021927.01 | MsG0880043253.01 | 0.819907 | 9.074944e-53 | 7.075678e-50 |
MsG0480021927.01 | MsG0880043292.01 | 0.801900 | 7.238440e-49 | 3.497606e-46 |
MsG0480021927.01 | MsG0880043329.01 | 0.816618 | 5.039197e-52 | 3.588340e-49 |
MsG0480021927.01 | MsG0880043812.01 | 0.818641 | 1.763029e-52 | 1.327044e-49 |
MsG0480021927.01 | MsG0880043941.01 | 0.808386 | 3.177395e-50 | 1.814363e-47 |
MsG0480021927.01 | MsG0880044079.01 | 0.845485 | 3.944037e-59 | 6.582552e-56 |
MsG0480021927.01 | MsG0880044080.01 | 0.832292 | 1.027583e-55 | 1.143420e-52 |
MsG0480021927.01 | MsG0880044085.01 | 0.820875 | 5.443714e-53 | 4.360145e-50 |
MsG0480021927.01 | MsG0880044573.01 | 0.864179 | 1.464966e-64 | 4.557713e-61 |
MsG0480021927.01 | MsG0880044574.01 | 0.813071 | 3.081504e-51 | 1.992268e-48 |
MsG0480021927.01 | MsG0880045314.01 | 0.819556 | 1.091526e-52 | 8.427453e-50 |
MsG0480021927.01 | MsG0880045491.01 | 0.807385 | 5.186548e-50 | 2.884891e-47 |
MsG0480021927.01 | MsG0880045590.01 | 0.824265 | 8.864266e-54 | 7.812358e-51 |
MsG0480021927.01 | MsG0880045639.01 | 0.810138 | 1.337789e-50 | 8.000664e-48 |
MsG0480021927.01 | MsG0880045756.01 | 0.832299 | 1.023190e-55 | 1.138801e-52 |
MsG0480021927.01 | MsG0880045765.01 | 0.846527 | 2.054339e-59 | 3.546316e-56 |
MsG0480021927.01 | MsG0880045926.01 | 0.864012 | 1.651303e-64 | 5.107376e-61 |
MsG0480021927.01 | MsG0880046967.01 | 0.816743 | 4.725452e-52 | 3.376403e-49 |
MsG0380015720.01 | MsG0480021927.01 | 0.825380 | 4.837788e-54 | 4.402174e-51 |
MsG0380015877.01 | MsG0480021927.01 | 0.809581 | 1.762974e-50 | 1.039096e-47 |
MsG0380015878.01 | MsG0480021927.01 | 0.841415 | 4.819880e-58 | 7.077459e-55 |
MsG0380015931.01 | MsG0480021927.01 | 0.805433 | 1.338383e-49 | 7.079774e-47 |
MsG0380016004.01 | MsG0480021927.01 | 0.860390 | 2.135458e-63 | 5.827976e-60 |
MsG0380016064.01 | MsG0480021927.01 | 0.801569 | 8.463857e-49 | 4.055388e-46 |
MsG0380016475.01 | MsG0480021927.01 | 0.820949 | 5.232710e-53 | 4.200014e-50 |
MsG0380016624.01 | MsG0480021927.01 | 0.801634 | 8.208841e-49 | 3.939616e-46 |
MsG0380016909.01 | MsG0480021927.01 | 0.810695 | 1.014371e-50 | 6.156773e-48 |
MsG0380016910.01 | MsG0480021927.01 | 0.845243 | 4.584786e-59 | 7.593013e-56 |
MsG0380017048.01 | MsG0480021927.01 | 0.804805 | 1.811194e-49 | 9.427936e-47 |
MsG0380017220.01 | MsG0480021927.01 | 0.820428 | 6.893815e-53 | 5.453485e-50 |
MsG0380017286.01 | MsG0480021927.01 | 0.834788 | 2.447188e-56 | 2.934408e-53 |
MsG0380017326.01 | MsG0480021927.01 | 0.826220 | 3.057357e-54 | 2.849479e-51 |
MsG0380017452.01 | MsG0480021927.01 | 0.832018 | 1.200933e-55 | 1.325821e-52 |
MsG0380017680.01 | MsG0480021927.01 | 0.818082 | 2.360288e-52 | 1.749387e-49 |
MsG0480018128.01 | MsG0480021927.01 | 0.833085 | 6.528752e-56 | 7.440269e-53 |
MsG0480018236.01 | MsG0480021927.01 | 0.810534 | 1.098804e-50 | 6.640203e-48 |
MsG0480018251.01 | MsG0480021927.01 | 0.830433 | 2.944799e-55 | 3.102066e-52 |
MsG0480018318.01 | MsG0480021927.01 | 0.838656 | 2.526745e-57 | 3.406991e-54 |
MsG0480018321.01 | MsG0480021927.01 | 0.834641 | 2.664919e-56 | 3.181699e-53 |
MsG0280006491.01 | MsG0480021927.01 | 0.805138 | 1.542703e-49 | 8.099183e-47 |
MsG0280006588.01 | MsG0480021927.01 | 0.811314 | 7.446946e-51 | 4.594417e-48 |
MsG0280006661.01 | MsG0480021927.01 | 0.817410 | 3.345293e-52 | 2.434472e-49 |
MsG0280006769.01 | MsG0480021927.01 | 0.810064 | 1.387617e-50 | 8.283017e-48 |
MsG0280007023.01 | MsG0480021927.01 | 0.805674 | 1.191227e-49 | 6.340591e-47 |
MsG0280007311.01 | MsG0480021927.01 | 0.800593 | 1.340152e-48 | 6.264621e-46 |
MsG0280007547.01 | MsG0480021927.01 | 0.878069 | 3.782072e-69 | 1.946887e-65 |
MsG0280007826.01 | MsG0480021927.01 | 0.819497 | 1.126244e-52 | 8.681226e-50 |
MsG0280008073.01 | MsG0480021927.01 | 0.869875 | 2.229830e-66 | 8.500485e-63 |
MsG0280008615.01 | MsG0480021927.01 | 0.806522 | 7.896853e-50 | 4.295355e-47 |
MsG0280009024.01 | MsG0480021927.01 | 0.806258 | 8.977376e-50 | 4.850572e-47 |
MsG0280010378.01 | MsG0480021927.01 | 0.846272 | 2.410779e-59 | 4.126967e-56 |
MsG0280010443.01 | MsG0480021927.01 | 0.829754 | 4.313778e-55 | 4.456416e-52 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021927.01.T01 | MTR_4g078840 | 96.203 | 79 | 3 | 0 | 1 | 79 | 1 | 79 | 9.59e-49 | 149 |
MsG0480021927.01.T01 | MTR_2g090695 | 72.727 | 77 | 21 | 0 | 3 | 79 | 2 | 78 | 4.33e-29 | 99.4 |
MsG0480021927.01.T01 | MTR_2g015540 | 55.405 | 74 | 33 | 0 | 6 | 79 | 7 | 80 | 9.03e-26 | 90.9 |
MsG0480021927.01.T01 | MTR_4g079680 | 54.930 | 71 | 32 | 0 | 9 | 79 | 7 | 77 | 4.45e-24 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021927.01.T01 | AT2G20562 | 61.972 | 71 | 27 | 0 | 9 | 79 | 3 | 73 | 2.75e-21 | 79.3 |
MsG0480021927.01.T01 | AT2G31090 | 60.563 | 71 | 28 | 0 | 9 | 79 | 5 | 75 | 3.41e-20 | 76.6 |
Find 16 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTATAGGTGCCATTATT+TGG | 0.130092 | 4:-66067498 | MsG0480021927.01.T01:CDS |
TTAACAAAATTCCTTGTTAG+AGG | 0.284855 | 4:-66067231 | None:intergenic |
AGACCTTTGGGTTTCTTCAT+TGG | 0.312975 | 4:-66067553 | MsG0480021927.01.T01:CDS |
GCTTGATGTTGCTGTATGTT+TGG | 0.367654 | 4:-66067287 | MsG0480021927.01.T01:CDS |
TTCCAGTTAGAATTCTTAGA+TGG | 0.387506 | 4:-66067258 | MsG0480021927.01.T01:CDS |
AACCATCTAAGAATTCTAAC+TGG | 0.391220 | 4:+66067256 | None:intergenic |
GGTGCCATTATTTGGATTCT+CGG | 0.429725 | 4:-66067490 | MsG0480021927.01.T01:CDS |
ATTAATGATAATAGAGCAAA+GGG | 0.435160 | 4:+66067526 | None:intergenic |
GTGCCATTATTTGGATTCTC+GGG | 0.441384 | 4:-66067489 | MsG0480021927.01.T01:intron |
ATACCCGAGAATCCAAATAA+TGG | 0.476544 | 4:+66067486 | None:intergenic |
CCTTGTTGCATATGCTGCAC+AGG | 0.484811 | 4:-66067313 | MsG0480021927.01.T01:CDS |
GTCTACATTCACAAAAGTCT+TGG | 0.513894 | 4:+66067572 | None:intergenic |
AATTAATGATAATAGAGCAA+AGG | 0.578873 | 4:+66067525 | None:intergenic |
CCTGTGCAGCATATGCAACA+AGG | 0.629974 | 4:+66067313 | None:intergenic |
ATAGTACTTATCCTCTAACA+AGG | 0.686710 | 4:+66067220 | None:intergenic |
AATCCAATGAAGAAACCCAA+AGG | 0.693801 | 4:+66067550 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCATTAATTTTATCTCTTAT+AGG | - | Chr4:66067306-66067325 | MsG0480021927.01.T01:CDS | 15.0% |
!! | AATACTACAAACATAGAAAA+TGG | + | Chr4:66067383-66067402 | None:intergenic | 20.0% |
!! | AATTAATGATAATAGAGCAA+AGG | + | Chr4:66067295-66067314 | None:intergenic | 20.0% |
!! | ATACTACAAACATAGAAAAT+GGG | + | Chr4:66067382-66067401 | None:intergenic | 20.0% |
!! | ATTAATGATAATAGAGCAAA+GGG | + | Chr4:66067294-66067313 | None:intergenic | 20.0% |
!!! | TGTTCATCTTCTTTTATTAT+AGG | - | Chr4:66067460-66067479 | MsG0480021927.01.T01:intron | 20.0% |
AACCATCTAAGAATTCTAAC+TGG | + | Chr4:66067564-66067583 | None:intergenic | 30.0% | |
TTCCAGTTAGAATTCTTAGA+TGG | - | Chr4:66067559-66067578 | MsG0480021927.01.T01:CDS | 30.0% | |
! | TTTTGTGAATGTAGACCTTT+GGG | - | Chr4:66067252-66067271 | MsG0480021927.01.T01:CDS | 30.0% |
AATCCAATGAAGAAACCCAA+AGG | + | Chr4:66067270-66067289 | None:intergenic | 35.0% | |
ATACCCGAGAATCCAAATAA+TGG | + | Chr4:66067334-66067353 | None:intergenic | 35.0% | |
GTCTACATTCACAAAAGTCT+TGG | + | Chr4:66067248-66067267 | None:intergenic | 35.0% | |
! | CTTTTGTGAATGTAGACCTT+TGG | - | Chr4:66067251-66067270 | MsG0480021927.01.T01:CDS | 35.0% |
!! | CTCTTATAGGTGCCATTATT+TGG | - | Chr4:66067319-66067338 | MsG0480021927.01.T01:CDS | 35.0% |
GCTTGATGTTGCTGTATGTT+TGG | - | Chr4:66067530-66067549 | MsG0480021927.01.T01:CDS | 40.0% | |
! | AGACCTTTGGGTTTCTTCAT+TGG | - | Chr4:66067264-66067283 | MsG0480021927.01.T01:CDS | 40.0% |
! | GTGCCATTATTTGGATTCTC+GGG | - | Chr4:66067328-66067347 | MsG0480021927.01.T01:CDS | 40.0% |
!! | GGTGCCATTATTTGGATTCT+CGG | - | Chr4:66067327-66067346 | MsG0480021927.01.T01:CDS | 40.0% |
CCTGTGCAGCATATGCAACA+AGG | + | Chr4:66067507-66067526 | None:intergenic | 50.0% | |
CCTTGTTGCATATGCTGCAC+AGG | - | Chr4:66067504-66067523 | MsG0480021927.01.T01:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 66067234 | 66067605 | 66067234 | ID=MsG0480021927.01;Name=MsG0480021927.01 |
Chr4 | mRNA | 66067234 | 66067605 | 66067234 | ID=MsG0480021927.01.T01;Parent=MsG0480021927.01;Name=MsG0480021927.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|79 |
Chr4 | exon | 66067234 | 66067357 | 66067234 | ID=MsG0480021927.01.T01:exon:20826;Parent=MsG0480021927.01.T01 |
Chr4 | exon | 66067490 | 66067605 | 66067490 | ID=MsG0480021927.01.T01:exon:20825;Parent=MsG0480021927.01.T01 |
Chr4 | CDS | 66067490 | 66067605 | 66067490 | ID=MsG0480021927.01.T01:cds;Parent=MsG0480021927.01.T01 |
Chr4 | CDS | 66067234 | 66067357 | 66067234 | ID=MsG0480021927.01.T01:cds;Parent=MsG0480021927.01.T01 |
Gene Sequence |
Protein sequence |