AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043337.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043337.01.T01 MTR_8g032590 78.767 292 17 3 1 256 1 283 4.69e-155 432
MsG0880043337.01.T01 MTR_8g032590 77.820 266 21 2 27 256 31 294 3.35e-135 383
MsG0880043337.01.T01 MTR_8g032590 78.431 255 17 2 38 256 1 253 1.61e-130 369
MsG0880043337.01.T01 MTR_1g101520 45.703 256 94 6 27 256 31 267 4.61e-47 161
MsG0880043337.01.T01 MTR_8g027190 45.614 228 81 7 12 213 3 213 2.55e-43 147
MsG0880043337.01.T01 MTR_8g027190 44.397 232 89 7 8 213 2 219 4.11e-43 146
MsG0880043337.01.T01 MTR_8g027190 46.948 213 77 6 27 213 31 233 1.17e-42 145
MsG0880043337.01.T01 MTR_1g101520 48.691 191 68 4 38 202 1 187 1.68e-42 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043337.01.T01 AT3G61860 45.679 243 106 7 27 253 31 263 5.30e-46 155
MsG0880043337.01.T01 AT2G46610 43.154 241 99 9 23 241 3 227 8.49e-45 150
MsG0880043337.01.T01 AT2G46610 43.154 241 99 9 23 241 3 227 8.49e-45 150
MsG0880043337.01.T01 AT2G46610 41.379 261 113 10 5 241 3 247 2.81e-44 150
MsG0880043337.01.T01 AT2G46610 44.934 227 91 8 33 241 11 221 4.52e-44 149
MsG0880043337.01.T01 AT4G25500 44.882 254 92 9 27 242 31 274 1.19e-43 151
MsG0880043337.01.T01 AT4G25500 44.882 254 92 9 27 242 31 274 1.19e-43 151
MsG0880043337.01.T01 AT5G52040 43.321 277 90 8 31 250 8 274 1.52e-43 150
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 4 241 1.61e-43 150
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 4 241 1.61e-43 150
MsG0880043337.01.T01 AT5G52040 43.060 281 93 8 27 250 31 301 1.76e-43 151
MsG0880043337.01.T01 AT5G52040 43.636 275 88 8 33 250 4 268 1.78e-43 150
MsG0880043337.01.T01 AT5G52040 43.060 281 93 8 27 250 31 301 1.93e-43 150
MsG0880043337.01.T01 AT5G52040 43.636 275 88 8 33 250 4 268 2.32e-43 149
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 16 253 2.48e-43 150
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 16 253 2.48e-43 150
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 16 253 2.48e-43 150
MsG0880043337.01.T01 AT4G25500 45.565 248 87 9 33 242 16 253 2.48e-43 150
MsG0880043337.01.T01 AT5G52040 42.963 270 87 8 38 250 1 260 2.93e-39 139
MsG0880043337.01.T01 AT5G52040 42.963 270 87 8 38 250 1 260 2.93e-39 139

Find 94 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCGGCTCGTTCATATT+TGG 0.142896 8:+23259846 None:intergenic
CTTTCGGCTCGTTCATATTT+GGG 0.190248 8:+23259847 None:intergenic
TTGGGGCTTCCTCTTGCTTC+TGG 0.223434 8:+23259865 None:intergenic
ATGGGAAAATAGCAAATTTA+AGG 0.230089 8:-23260551 MsG0880043337.01.T01:CDS
TTTGGGCTTCCTCTTGGTTC+TGG 0.262570 8:+23260068 None:intergenic
TCTCCTATTCATTGGGCTTT+CGG 0.277988 8:+23259831 None:intergenic
TTCACTTATGTTAGTCCATT+TGG 0.304192 8:-23259636 MsG0880043337.01.T01:three_prime_UTR
ATGATAAACAAAGTCTTTGA+TGG 0.315363 8:+23260630 None:intergenic
TCACACCAGGACAAGGGATT+TGG 0.323290 8:-23260592 MsG0880043337.01.T01:CDS
CTTGCTTCTGGTCTGGAAGA+TGG 0.326321 8:+23259877 None:intergenic
TTTCAGCTCGTTCATACTTT+GGG 0.329570 8:+23260051 None:intergenic
CTTCCTCCTGGGTTTCAAAC+TGG 0.333226 8:+23260505 None:intergenic
AGTTGCTTCCAAAGCTTTAG+TGG 0.342510 8:+23260482 None:intergenic
AAGCTTTAGTGGCTTCCTCC+TGG 0.346570 8:+23260493 None:intergenic
CTTTCAGCTCGTTCATACTT+TGG 0.353285 8:+23260050 None:intergenic
GCTTCCTCTTGCTTCTGGTC+TGG 0.356652 8:+23259870 None:intergenic
TTTGATCCACGACCATAATC+AGG 0.375389 8:+23260104 None:intergenic
CTGGGTTTCAAACTGGATAA+AGG 0.380203 8:+23260512 None:intergenic
CATAAGTGAAACGAATAAAA+TGG 0.380780 8:+23259649 None:intergenic
GCTTCCTCTTGGTTCTGGTC+TGG 0.381638 8:+23260073 None:intergenic
CTTGGTTCTGGTCTGGAAGC+AGG 0.385077 8:+23260080 None:intergenic
GTTTACTCTTATGTTTAGTC+AGG 0.393756 8:-23259583 MsG0880043337.01.T01:three_prime_UTR
CTATCATATCTCCTATTCAT+TGG 0.403272 8:+23259823 None:intergenic
AGCTTTAGTGGCTTCCTCCT+GGG 0.404195 8:+23260494 None:intergenic
TCCCTTGTCCTGGTGTGAAC+AGG 0.409494 8:+23260597 None:intergenic
TATCATATCTCCTATTCATT+GGG 0.415138 8:+23259824 None:intergenic
GGTAGGGGTAGCCCTGATTA+TGG 0.423566 8:-23260116 MsG0880043337.01.T01:CDS
CTATCGTATCTCCCATTCAT+TGG 0.425687 8:+23260026 None:intergenic
AAGACTTGATCAAACAGAAT+TGG 0.426643 8:-23261092 MsG0880043337.01.T01:CDS
TCATACTTTGGGCTTCCTCT+TGG 0.429909 8:+23260062 None:intergenic
GAGAGACACTTTGATCCCTA+TGG 0.440350 8:-23260570 MsG0880043337.01.T01:CDS
GGAGGAAGCCACTAAAGCTT+TGG 0.441798 8:-23260490 MsG0880043337.01.T01:CDS
GAGCCGAAAGCCCAATGAAT+AGG 0.442287 8:-23259834 MsG0880043337.01.T01:CDS
TAGTCCACTCAACACGAATT+CGG 0.449418 8:+23261057 None:intergenic
TATCGTATCTCCCATTCATT+GGG 0.451712 8:+23260027 None:intergenic
AAGTCTTCTGATTGCATACT+CGG 0.473273 8:+23261108 None:intergenic
ATCAAACAGAATTGGTAGAA+AGG 0.474756 8:-23261084 MsG0880043337.01.T01:CDS
TATGGTCGTGGCTCTCCTGA+TGG 0.475475 8:-23260179 MsG0880043337.01.T01:CDS
GGCTCTCCTGATGGGAGGTA+TGG 0.475559 8:-23260170 MsG0880043337.01.T01:CDS
TCAAACAGAATTGGTAGAAA+GGG 0.480888 8:-23261083 MsG0880043337.01.T01:CDS
TCTCTCCAAATCCCTTGTCC+TGG 0.491906 8:+23260587 None:intergenic
CTACCTCTACGATAAGGACT+TGG 0.492341 8:+23260134 None:intergenic
GAACGTGACAACAGAAGGTC+TGG 0.507207 8:-23260687 MsG0880043337.01.T01:CDS
CGAGCTGAAAGCCCAATGAA+TGG 0.508056 8:-23260038 MsG0880043337.01.T01:CDS
GAGCTGAAAGCCCAATGAAT+GGG 0.508946 8:-23260037 MsG0880043337.01.T01:CDS
CGTGATAGGTCGCGATCTTG+AGG 0.515592 8:-23259711 MsG0880043337.01.T01:exon
TTTCGGCTCGTTCATATTTG+GGG 0.518606 8:+23259848 None:intergenic
GGTAGCCCTGATTATGGTCG+TGG 0.521034 8:-23260110 MsG0880043337.01.T01:CDS
ACTGTATGTGAAATTGCTGC+TGG 0.528175 8:-23259673 MsG0880043337.01.T01:three_prime_UTR
CAAGTCCTTATCGTAGAGGT+AGG 0.528504 8:-23260133 MsG0880043337.01.T01:CDS
ATGGTCGTGGCTCTCCTGAT+GGG 0.530025 8:-23260178 MsG0880043337.01.T01:CDS
CCACATTTGTGAAATCATCA+TGG 0.530992 8:+23261339 None:intergenic
CCACGACCATACCTCCCATC+AGG 0.532085 8:+23260164 None:intergenic
TACCTCTACGATAAGGACTT+GGG 0.534013 8:+23260135 None:intergenic
AAGTCCTTATCGTAGAGGTA+GGG 0.539969 8:-23260132 MsG0880043337.01.T01:CDS
TAGCAAATTTAAGGATCAGA+AGG 0.539989 8:-23260542 MsG0880043337.01.T01:CDS
CTTTATCCAGTTTGAAACCC+AGG 0.543865 8:-23260511 MsG0880043337.01.T01:CDS
AATTCGTGTTGAGTGGACTA+AGG 0.550220 8:-23261054 MsG0880043337.01.T01:CDS
AGGCAGAACGTGACAACAGA+AGG 0.552682 8:-23260692 MsG0880043337.01.T01:CDS
CACAAATGTGGCAGGTGTTG+TGG 0.554389 8:-23261327 MsG0880043337.01.T01:CDS
CTACCCCTACCTCTACGATA+AGG 0.557736 8:+23260128 None:intergenic
ATCCTGTTCACACCAGGACA+AGG 0.558433 8:-23260599 MsG0880043337.01.T01:CDS
GGATTTGATCCACGAGGTGG+GGG 0.559080 8:+23259898 None:intergenic
CAATGAATAGGAGATATGAT+AGG 0.561747 8:-23259822 MsG0880043337.01.T01:intron
AGAGACACTTTGATCCCTAT+GGG 0.561978 8:-23260569 MsG0880043337.01.T01:CDS
CGCGACCTATCACGAGGTGG+GGG 0.564565 8:+23259720 None:intergenic
ATCGCGACCTATCACGAGGT+GGG 0.566977 8:+23259718 None:intergenic
GTTCATATGTTGAAACATGT+CGG 0.573252 8:+23261361 None:intergenic
CCATTTGGCACAAGAAAACT+CGG 0.577223 8:-23259621 MsG0880043337.01.T01:three_prime_UTR
ATGGATTTGATCCACGAGGT+GGG 0.577732 8:+23259896 None:intergenic
TGGATTTGATCCACGAGGTG+GGG 0.599637 8:+23259897 None:intergenic
AGTCCTTATCGTAGAGGTAG+GGG 0.601718 8:-23260131 MsG0880043337.01.T01:CDS
GATGATTTCACAAATGTGGC+AGG 0.602322 8:-23261335 MsG0880043337.01.T01:CDS
CCTGATGGTAGGTATGGTCG+TGG 0.610572 8:-23260191 MsG0880043337.01.T01:intron
CCTGATGGGAGGTATGGTCG+TGG 0.614524 8:-23260164 MsG0880043337.01.T01:CDS
TTGATCCACGACCATAATCA+GGG 0.614797 8:+23260105 None:intergenic
GATGGATTTGATCCACGAGG+TGG 0.617728 8:+23259895 None:intergenic
TCGCGACCTATCACGAGGTG+GGG 0.620372 8:+23259719 None:intergenic
CAATGAATGGGAGATACGAT+AGG 0.627017 8:-23260025 MsG0880043337.01.T01:intron
TCCTGTTCACACCAGGACAA+GGG 0.627851 8:-23260598 MsG0880043337.01.T01:CDS
CCATGATGATTTCACAAATG+TGG 0.632424 8:-23261339 MsG0880043337.01.T01:CDS
ACCTCTACGATAAGGACTTG+GGG 0.634271 8:+23260136 None:intergenic
GTCGTGGCTCTCCTGATGGG+AGG 0.634568 8:-23260175 MsG0880043337.01.T01:CDS
TCTTCCAGACCAGAAGCAAG+AGG 0.635934 8:-23259874 MsG0880043337.01.T01:CDS
CAAACAGAATTGGTAGAAAG+GGG 0.639173 8:-23261082 MsG0880043337.01.T01:CDS
GGCGCCGAATTCGTGTTGAG+TGG 0.643328 8:-23261061 MsG0880043337.01.T01:CDS
TCCCCAAGTCCTTATCGTAG+AGG 0.646666 8:-23260137 MsG0880043337.01.T01:CDS
CTTTGGAAGCAACTAACATG+AGG 0.647772 8:-23260473 MsG0880043337.01.T01:intron
GATCGCGACCTATCACGAGG+TGG 0.675794 8:+23259717 None:intergenic
CGTGACAACAGAAGGTCTGG+TGG 0.678364 8:-23260684 MsG0880043337.01.T01:CDS
GCTTCCAGACCAGAACCAAG+AGG 0.692548 8:-23260077 MsG0880043337.01.T01:CDS
CAAGATCGCGACCTATCACG+AGG 0.693794 8:+23259714 None:intergenic
TATCCAGTTTGAAACCCAGG+AGG 0.731503 8:-23260508 MsG0880043337.01.T01:CDS
GAAGATGGATTTGATCCACG+AGG 0.793376 8:+23259892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTGATTTTTATTTTTT+TGG - Chr8:23260887-23260906 MsG0880043337.01.T01:intron 10.0%
!!! ATTTTGGAATTATTTAATTT+TGG - Chr8:23260112-23260131 MsG0880043337.01.T01:CDS 10.0%
!!! CATTTTGTTATAAATAATTT+TGG - Chr8:23259928-23259947 MsG0880043337.01.T01:intron 10.0%
!!! GAATTAAATTGTTTTTTTTT+GGG - Chr8:23261074-23261093 MsG0880043337.01.T01:CDS 10.0%
!!! TGTTGTTATATTATATTTTT+AGG - Chr8:23260154-23260173 MsG0880043337.01.T01:CDS 10.0%
!!! TTCTTGATTTTTATTTTTTT+GGG - Chr8:23260888-23260907 MsG0880043337.01.T01:intron 10.0%
!!! TTTTGGAATTATTTAATTTT+GGG - Chr8:23260113-23260132 MsG0880043337.01.T01:CDS 10.0%
!!! AATTTGTTAGATTATAATGA+CGG - Chr8:23259964-23259983 MsG0880043337.01.T01:intron 15.0%
!!! CGAATTAAATTGTTTTTTTT+TGG - Chr8:23261073-23261092 MsG0880043337.01.T01:CDS 15.0%
!!! ATATAGATCTCATTGTATTT+TGG - Chr8:23260918-23260937 MsG0880043337.01.T01:intron 20.0%
!!! CTTTTCTTAATGAATGATTT+TGG - Chr8:23260096-23260115 MsG0880043337.01.T01:CDS 20.0%
!!! TTTTAACATTCTTGTTTCAT+AGG - Chr8:23259700-23259719 MsG0880043337.01.T01:exon 20.0%
!!! TTTTCAAAAGAAAAATCACA+AGG + Chr8:23261368-23261387 None:intergenic 20.0%
! ATGATAAACAAAGTCTTTGA+TGG + Chr8:23260239-23260258 None:intergenic 25.0%
! ATGGGAAAATAGCAAATTTA+AGG - Chr8:23260315-23260334 MsG0880043337.01.T01:intron 25.0%
! CAAAACAGAAATAAACTGTA+AGG + Chr8:23259570-23259589 None:intergenic 25.0%
! CATAAGTGAAACGAATAAAA+TGG + Chr8:23261220-23261239 None:intergenic 25.0%
! TATCATATCTCCTATTCATT+GGG + Chr8:23261045-23261064 None:intergenic 25.0%
! TTATCATGTACTTTATAGCT+TGG - Chr8:23259894-23259913 MsG0880043337.01.T01:CDS 25.0%
!! AGAATGTACTATGTTTCTAA+AGG + Chr8:23260476-23260495 None:intergenic 25.0%
!!! AAATTTGCTATTTTCCCATA+GGG + Chr8:23260314-23260333 None:intergenic 25.0%
!!! TAAATTTGCTATTTTCCCAT+AGG + Chr8:23260315-23260334 None:intergenic 25.0%
AAGACTTGATCAAACAGAAT+TGG - Chr8:23259774-23259793 MsG0880043337.01.T01:intron 30.0%
ATCAAACAGAATTGGTAGAA+AGG - Chr8:23259782-23259801 MsG0880043337.01.T01:intron 30.0%
CAATGAATAGGAGATATGAT+AGG - Chr8:23261044-23261063 MsG0880043337.01.T01:intron 30.0%
CTATCATATCTCCTATTCAT+TGG + Chr8:23261046-23261065 None:intergenic 30.0%
GTTCATATGTTGAAACATGT+CGG + Chr8:23259508-23259527 None:intergenic 30.0%
GTTTACTCTTATGTTTAGTC+AGG - Chr8:23261283-23261302 MsG0880043337.01.T01:intron 30.0%
TAGCAAATTTAAGGATCAGA+AGG - Chr8:23260324-23260343 MsG0880043337.01.T01:intron 30.0%
TCAAACAGAATTGGTAGAAA+GGG - Chr8:23259783-23259802 MsG0880043337.01.T01:intron 30.0%
TGTAATAGTGAACTGCATTA+GGG - Chr8:23259840-23259859 MsG0880043337.01.T01:CDS 30.0%
TTCACTTATGTTAGTCCATT+TGG - Chr8:23261230-23261249 MsG0880043337.01.T01:intron 30.0%
! CATGAGAATTGCTATACTTT+TGG - Chr8:23260001-23260020 MsG0880043337.01.T01:intron 30.0%
! TTGAACTAAAATTTTCTGCG+TGG - Chr8:23259672-23259691 MsG0880043337.01.T01:three_prime_UTR 30.0%
!! AATTTTACTTTTCATGCAGC+CGG - Chr8:23260942-23260961 MsG0880043337.01.T01:intron 30.0%
!! AGGTTTTGCTTTTATCTACA+TGG - Chr8:23259720-23259739 MsG0880043337.01.T01:CDS 30.0%
AAGTCTTCTGATTGCATACT+CGG + Chr8:23259761-23259780 None:intergenic 35.0%
CAAACAGAATTGGTAGAAAG+GGG - Chr8:23259784-23259803 MsG0880043337.01.T01:intron 35.0%
CCACATTTGTGAAATCATCA+TGG + Chr8:23259530-23259549 None:intergenic 35.0%
CCATGATGATTTCACAAATG+TGG - Chr8:23259527-23259546 MsG0880043337.01.T01:three_prime_UTR 35.0%
CTGTAATAGTGAACTGCATT+AGG - Chr8:23259839-23259858 MsG0880043337.01.T01:CDS 35.0%
GTACTTTATAGCTTGGCATT+TGG - Chr8:23259901-23259920 MsG0880043337.01.T01:CDS 35.0%
TAAGGGGCTATATATCTCAA+TGG - Chr8:23260529-23260548 MsG0880043337.01.T01:CDS 35.0%
TATCGTATCTCCCATTCATT+GGG + Chr8:23260842-23260861 None:intergenic 35.0%
TTTCAGCTCGTTCATACTTT+GGG + Chr8:23260818-23260837 None:intergenic 35.0%
! AAGGGATGATGATGTCAAAA+GGG - Chr8:23260618-23260637 MsG0880043337.01.T01:CDS 35.0%
! TAAGGGATGATGATGTCAAA+AGG - Chr8:23260617-23260636 MsG0880043337.01.T01:CDS 35.0%
AAGTCCTTATCGTAGAGGTA+GGG - Chr8:23260734-23260753 MsG0880043337.01.T01:intron 40.0%
ACTGTATGTGAAATTGCTGC+TGG - Chr8:23261193-23261212 MsG0880043337.01.T01:intron 40.0%
AGAGACACTTTGATCCCTAT+GGG - Chr8:23260297-23260316 MsG0880043337.01.T01:intron 40.0%
AGTACATTCTACCGCCTTTA+TGG - Chr8:23260486-23260505 MsG0880043337.01.T01:CDS 40.0%
CAATGAATGGGAGATACGAT+AGG - Chr8:23260841-23260860 MsG0880043337.01.T01:intron 40.0%
CACAGTGGAGTATGCTATAA+GGG - Chr8:23260600-23260619 MsG0880043337.01.T01:CDS 40.0%
CATACTCCACTGTGATAACA+CGG + Chr8:23260594-23260613 None:intergenic 40.0%
CCATTTGGCACAAGAAAACT+CGG - Chr8:23261245-23261264 MsG0880043337.01.T01:intron 40.0%
CTATCGTATCTCCCATTCAT+TGG + Chr8:23260843-23260862 None:intergenic 40.0%
CTGGGTTTCAAACTGGATAA+AGG + Chr8:23260357-23260376 None:intergenic 40.0%
CTTTATAGCTTGGCATTTGG+AGG - Chr8:23259904-23259923 MsG0880043337.01.T01:CDS 40.0%
CTTTCAGCTCGTTCATACTT+TGG + Chr8:23260819-23260838 None:intergenic 40.0%
GAAGACTCCTTTCATCAAGA+TGG + Chr8:23259645-23259664 None:intergenic 40.0%
GATGATTTCACAAATGTGGC+AGG - Chr8:23259531-23259550 MsG0880043337.01.T01:three_prime_UTR 40.0%
TACCTCTACGATAAGGACTT+GGG + Chr8:23260734-23260753 None:intergenic 40.0%
TAGTCCACTCAACACGAATT+CGG + Chr8:23259812-23259831 None:intergenic 40.0%
TCACAGTGGAGTATGCTATA+AGG - Chr8:23260599-23260618 MsG0880043337.01.T01:CDS 40.0%
TCATACCTGATATCCTGATG+CGG - Chr8:23259605-23259624 MsG0880043337.01.T01:three_prime_UTR 40.0%
TCTCCTATTCATTGGGCTTT+CGG + Chr8:23261038-23261057 None:intergenic 40.0%
TTGATCCACGACCATAATCA+GGG + Chr8:23260764-23260783 None:intergenic 40.0%
TTTGACGTGCAGCAAGTTTA+TGG - Chr8:23260567-23260586 MsG0880043337.01.T01:CDS 40.0%
TTTGATCCACGACCATAATC+AGG + Chr8:23260765-23260784 None:intergenic 40.0%
! AGTTGCTTCCAAAGCTTTAG+TGG + Chr8:23260387-23260406 None:intergenic 40.0%
! CTTTATCCAGTTTGAAACCC+AGG - Chr8:23260355-23260374 MsG0880043337.01.T01:intron 40.0%
! CTTTCGGCTCGTTCATATTT+GGG + Chr8:23261022-23261041 None:intergenic 40.0%
! CTTTGGAAGCAACTAACATG+AGG - Chr8:23260393-23260412 MsG0880043337.01.T01:intron 40.0%
! GATGATGATGTCAAAAGGGA+TGG - Chr8:23260622-23260641 MsG0880043337.01.T01:CDS 40.0%
! TTTCGGCTCGTTCATATTTG+GGG + Chr8:23261021-23261040 None:intergenic 40.0%
!! AATTCGTGTTGAGTGGACTA+AGG - Chr8:23259812-23259831 MsG0880043337.01.T01:intron 40.0%
!! ATTTTGATCCTGTTCACACC+AGG - Chr8:23260261-23260280 MsG0880043337.01.T01:intron 40.0%
ACCCTCATTCCTCTCCATAA+AGG + Chr8:23260503-23260522 None:intergenic 45.0%
ACCTCTACGATAAGGACTTG+GGG + Chr8:23260733-23260752 None:intergenic 45.0%
AGGAATGAGGGTAAGGACTA+AGG - Chr8:23260511-23260530 MsG0880043337.01.T01:CDS 45.0%
AGTCCTTATCGTAGAGGTAG+GGG - Chr8:23260735-23260754 MsG0880043337.01.T01:intron 45.0%
ATGGATTTGATCCACGAGGT+GGG + Chr8:23260973-23260992 None:intergenic 45.0%
ATTCTACCGCCTTTATGGAG+AGG - Chr8:23260491-23260510 MsG0880043337.01.T01:CDS 45.0%
CAAGTCCTTATCGTAGAGGT+AGG - Chr8:23260733-23260752 MsG0880043337.01.T01:intron 45.0%
CCTTTCATCAAGATGGCGTA+GGG + Chr8:23259638-23259657 None:intergenic 45.0%
CTACCTCTACGATAAGGACT+TGG + Chr8:23260735-23260754 None:intergenic 45.0%
CTCATTCCTCTCCATAAAGG+CGG + Chr8:23260500-23260519 None:intergenic 45.0%
GAACATAAGCAGCAGCTACA+AGG + Chr8:23260077-23260096 None:intergenic 45.0%
GAATGAGGGTAAGGACTAAG+GGG - Chr8:23260513-23260532 MsG0880043337.01.T01:CDS 45.0%
GAGAGACACTTTGATCCCTA+TGG - Chr8:23260296-23260315 MsG0880043337.01.T01:intron 45.0%
GAGCTGAAAGCCCAATGAAT+GGG - Chr8:23260829-23260848 MsG0880043337.01.T01:intron 45.0%
GCCTTTATGGAGAGGAATGA+GGG - Chr8:23260499-23260518 MsG0880043337.01.T01:CDS 45.0%
GGAATGAGGGTAAGGACTAA+GGG - Chr8:23260512-23260531 MsG0880043337.01.T01:CDS 45.0%
GGATACAGTCCTGATAGAAG+AGG - Chr8:23260643-23260662 MsG0880043337.01.T01:CDS 45.0%
TATGGACCGTGTTATCACAG+TGG - Chr8:23260585-23260604 MsG0880043337.01.T01:CDS 45.0%
TATGGAGAGGAATGAGGGTA+AGG - Chr8:23260504-23260523 MsG0880043337.01.T01:CDS 45.0%
TCATACTTTGGGCTTCCTCT+TGG + Chr8:23260807-23260826 None:intergenic 45.0%
TCCTTTCATCAAGATGGCGT+AGG + Chr8:23259639-23259658 None:intergenic 45.0%
! CCGAGTTTTCTTGTGCCAAA+TGG + Chr8:23261248-23261267 None:intergenic 45.0%
! GAAGATGGATTTGATCCACG+AGG + Chr8:23260977-23260996 None:intergenic 45.0%
! GCTTTCGGCTCGTTCATATT+TGG + Chr8:23261023-23261042 None:intergenic 45.0%
! TATCCAGTTTGAAACCCAGG+AGG - Chr8:23260358-23260377 MsG0880043337.01.T01:intron 45.0%
!! AAGAATAAAAAATAATTAAA+TGG + Chr8:23260873-23260892 None:intergenic 5.0%
AGGCAGAACGTGACAACAGA+AGG - Chr8:23260174-23260193 MsG0880043337.01.T01:CDS 50.0%
AGTCCTGATAGAAGAGGTCG+CGG - Chr8:23260649-23260668 MsG0880043337.01.T01:CDS 50.0%
ATCCTGTTCACACCAGGACA+AGG - Chr8:23260267-23260286 MsG0880043337.01.T01:intron 50.0%
CACGACCATACCTACCATCA+GGG + Chr8:23260677-23260696 None:intergenic 50.0%
CCCTACGCCATCTTGATGAA+AGG - Chr8:23259635-23259654 MsG0880043337.01.T01:three_prime_UTR 50.0%
CGAGCTGAAAGCCCAATGAA+TGG - Chr8:23260828-23260847 MsG0880043337.01.T01:intron 50.0%
CGCCTTTATGGAGAGGAATG+AGG - Chr8:23260498-23260517 MsG0880043337.01.T01:CDS 50.0%
CTACCCCTACCTCTACGATA+AGG + Chr8:23260741-23260760 None:intergenic 50.0%
CTTCCTCCTGGGTTTCAAAC+TGG + Chr8:23260364-23260383 None:intergenic 50.0%
CTTGCTTCTGGTCTGGAAGA+TGG + Chr8:23260992-23261011 None:intergenic 50.0%
GAACGTGACAACAGAAGGTC+TGG - Chr8:23260179-23260198 MsG0880043337.01.T01:CDS 50.0%
GAATGCCGCATCAGGATATC+AGG + Chr8:23259613-23259632 None:intergenic 50.0%
GAGCCGAAAGCCCAATGAAT+AGG - Chr8:23261032-23261051 MsG0880043337.01.T01:intron 50.0%
GGAGGAAGCCACTAAAGCTT+TGG - Chr8:23260376-23260395 MsG0880043337.01.T01:intron 50.0%
TCACACCAGGACAAGGGATT+TGG - Chr8:23260274-23260293 MsG0880043337.01.T01:intron 50.0%
TCCCCAAGTCCTTATCGTAG+AGG - Chr8:23260729-23260748 MsG0880043337.01.T01:intron 50.0%
TCCTGTTCACACCAGGACAA+GGG - Chr8:23260268-23260287 MsG0880043337.01.T01:intron 50.0%
TCTCTCCAAATCCCTTGTCC+TGG + Chr8:23260282-23260301 None:intergenic 50.0%
TCTTCCAGACCAGAAGCAAG+AGG - Chr8:23260992-23261011 MsG0880043337.01.T01:intron 50.0%
TGGATTTGATCCACGAGGTG+GGG + Chr8:23260972-23260991 None:intergenic 50.0%
TTCATCAAGATGGCGTAGGG+AGG + Chr8:23259635-23259654 None:intergenic 50.0%
TTTGGGCTTCCTCTTGGTTC+TGG + Chr8:23260801-23260820 None:intergenic 50.0%
! AAGCTTTAGTGGCTTCCTCC+TGG + Chr8:23260376-23260395 None:intergenic 50.0%
! AGCTTTAGTGGCTTCCTCCT+GGG + Chr8:23260375-23260394 None:intergenic 50.0%
! CACAAATGTGGCAGGTGTTG+TGG - Chr8:23259539-23259558 MsG0880043337.01.T01:three_prime_UTR 50.0%
! GATGGATTTGATCCACGAGG+TGG + Chr8:23260974-23260993 None:intergenic 50.0%
ATCGCGACCTATCACGAGGT+GGG + Chr8:23261151-23261170 None:intergenic 55.0%
ATGGTCGTGGCTCTCCTGAT+GGG - Chr8:23260688-23260707 MsG0880043337.01.T01:CDS 55.0%
CAAGATCGCGACCTATCACG+AGG + Chr8:23261155-23261174 None:intergenic 55.0%
CCACGACCATACCTACCATC+AGG + Chr8:23260678-23260697 None:intergenic 55.0%
CCTGATGGTAGGTATGGTCG+TGG - Chr8:23260675-23260694 MsG0880043337.01.T01:CDS 55.0%
CGTGACAACAGAAGGTCTGG+TGG - Chr8:23260182-23260201 MsG0880043337.01.T01:CDS 55.0%
CGTGATAGGTCGCGATCTTG+AGG - Chr8:23261155-23261174 MsG0880043337.01.T01:intron 55.0%
GCTTCCAGACCAGAACCAAG+AGG - Chr8:23260789-23260808 MsG0880043337.01.T01:intron 55.0%
GCTTCCTCTTGCTTCTGGTC+TGG + Chr8:23260999-23261018 None:intergenic 55.0%
GGATTTGATCCACGAGGTGG+GGG + Chr8:23260971-23260990 None:intergenic 55.0%
GGTAGCCCTGATTATGGTCG+TGG - Chr8:23260756-23260775 MsG0880043337.01.T01:intron 55.0%
GGTAGGGGTAGCCCTGATTA+TGG - Chr8:23260750-23260769 MsG0880043337.01.T01:intron 55.0%
TATCACGAGGTGGGGGAGAT+CGG + Chr8:23261142-23261161 None:intergenic 55.0%
TATGGTCGTGGCTCTCCTGA+TGG - Chr8:23260687-23260706 MsG0880043337.01.T01:CDS 55.0%
TCCCTTGTCCTGGTGTGAAC+AGG + Chr8:23260272-23260291 None:intergenic 55.0%
TTGGGGCTTCCTCTTGCTTC+TGG + Chr8:23261004-23261023 None:intergenic 55.0%
!! CTTGGTTCTGGTCTGGAAGC+AGG + Chr8:23260789-23260808 None:intergenic 55.0%
!! GCTTCCTCTTGGTTCTGGTC+TGG + Chr8:23260796-23260815 None:intergenic 55.0%
CCACGACCATACCTCCCATC+AGG + Chr8:23260705-23260724 None:intergenic 60.0%
CGGCTCCCTGATGGTAGGTA+TGG - Chr8:23260669-23260688 MsG0880043337.01.T01:CDS 60.0%
GAGCCGCGACCTCTTCTATC+AGG + Chr8:23260655-23260674 None:intergenic 60.0%
GATCGCGACCTATCACGAGG+TGG + Chr8:23261152-23261171 None:intergenic 60.0%
GATCTCCCCCACCTCGTGAT+AGG - Chr8:23261141-23261160 MsG0880043337.01.T01:CDS 60.0%
GGCTCTCCTGATGGGAGGTA+TGG - Chr8:23260696-23260715 MsG0880043337.01.T01:intron 60.0%
GTAGGGAGGAATGCCGCATC+AGG + Chr8:23259621-23259640 None:intergenic 60.0%
TCGCGACCTATCACGAGGTG+GGG + Chr8:23261150-23261169 None:intergenic 60.0%
! CCTGATGGGAGGTATGGTCG+TGG - Chr8:23260702-23260721 MsG0880043337.01.T01:intron 60.0%
! GGCGCCGAATTCGTGTTGAG+TGG - Chr8:23259805-23259824 MsG0880043337.01.T01:intron 60.0%
AAGAGGTCGCGGCTCCCTGA+TGG - Chr8:23260660-23260679 MsG0880043337.01.T01:CDS 65.0%
ATCCACGAGGTGGGGGTGAC+CGG + Chr8:23260964-23260983 None:intergenic 65.0%
CGCGACCTATCACGAGGTGG+GGG + Chr8:23261149-23261168 None:intergenic 65.0%
GTCGTGGCTCTCCTGATGGG+AGG - Chr8:23260691-23260710 MsG0880043337.01.T01:CDS 65.0%
GGTCGCGGCTCCCTGATGGT+AGG - Chr8:23260664-23260683 MsG0880043337.01.T01:CDS 70.0%
AGCCGGTCACCCCCACCTCG+TGG - Chr8:23260959-23260978 MsG0880043337.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 23259480 23261408 23259480 ID=MsG0880043337.01;Name=MsG0880043337.01
Chr8 mRNA 23259480 23261408 23259480 ID=MsG0880043337.01.T01;Parent=MsG0880043337.01;Name=MsG0880043337.01.T01;_AED=0.42;_eAED=0.44;_QI=0|0.4|0.5|1|0.6|0.5|6|233|256
Chr8 exon 23259480 23259749 23259480 ID=MsG0880043337.01.T01:exon:8495;Parent=MsG0880043337.01.T01
Chr8 exon 23259823 23259927 23259823 ID=MsG0880043337.01.T01:exon:8494;Parent=MsG0880043337.01.T01
Chr8 exon 23260026 23260202 23260026 ID=MsG0880043337.01.T01:exon:8493;Parent=MsG0880043337.01.T01
Chr8 exon 23260474 23260712 23260474 ID=MsG0880043337.01.T01:exon:8492;Parent=MsG0880043337.01.T01
Chr8 exon 23261048 23261166 23261048 ID=MsG0880043337.01.T01:exon:8491;Parent=MsG0880043337.01.T01
Chr8 exon 23261315 23261408 23261315 ID=MsG0880043337.01.T01:exon:8490;Parent=MsG0880043337.01.T01
Chr8 CDS 23261315 23261408 23261315 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 CDS 23261048 23261166 23261048 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 CDS 23260474 23260712 23260474 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 CDS 23260026 23260202 23260026 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 CDS 23259823 23259927 23259823 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 CDS 23259713 23259749 23259713 ID=MsG0880043337.01.T01:cds;Parent=MsG0880043337.01.T01
Chr8 three_prime_UTR 23259480 23259712 23259480 ID=MsG0880043337.01.T01:three_prime_utr;Parent=MsG0880043337.01.T01
Gene Sequence

>MsG0880043337.01.T01

ATGACTTTTGCTCACTGTTCAATTTCCGACATGTTTCAACATATGAACCATGATGATTTCACAAATGTGGCAGGTGTTGTGGTACTTCCTTACAGTTTTGCTTTTATCTACATGGAAGATGAACGTGATGCCGAGTATGCAATCAGAAGACTTGATCAAACAGAATTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGGTACGCTGCAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAAACCATCAAAGACTTTGTTTATCATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTGGAGAGACACTTTGATCCCTATGGGAAAATAGCAAATTTAAGGATCAGAAGGAATTTCGCCTTTATCCAGTTTGAAACCCAGGAGGAAGCCACTAAAGCTTTGGAAGCAACTAACATGAGGTATGGTCGTGGCTCTCCTGATGGGAGGTATGGTCGTGGCAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCTGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATACGATAGCCGGTCACCCCCACCTCGTGGATCAAATCCATCTTCCAGACCAGAAGCAAGAGGAAGCCCCAAATATGAACGAGCCGAAAGCCCAATGAATAGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCGCGATCTTGA
Protein sequence

>MsG0880043337.01.T01

MTFAHCSISDMFQHMNHDDFTNVAGVVVLPYSFAFIYMEDERDAEYAIRRLDQTELVERGAEFVLSGLRYAAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYGKIANLRIRRNFAFIQFETQEEATKALEATNMRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPMNGRYDSRSPPPRGSNPSSRPEARGSPKYERAESPMNRRYDSRSPPPRDRSRS*