Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043462.01.T01 | XP_013445013.1 | 97.772 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043462.01.T01 | Q9LPC5 | 72.682 | 399 | 100 | 5 | 6 | 404 | 2 | 391 | 0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043462.01.T01 | A0A072TQB9 | 97.772 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 0.0 | 810 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048599.01 | MsG0880043462.01 | 0.819865 | 9.280341e-53 | 7.227079e-50 |
| MsG0180003413.01 | MsG0880043462.01 | 0.821787 | 3.353869e-53 | 2.755584e-50 |
| MsG0180004519.01 | MsG0880043462.01 | 0.828847 | 7.159367e-55 | 7.200479e-52 |
| MsG0180004520.01 | MsG0880043462.01 | 0.839005 | 2.052494e-57 | 2.796971e-54 |
| MsG0180005168.01 | MsG0880043462.01 | 0.860291 | 2.288602e-63 | 6.223716e-60 |
| MsG0180006233.01 | MsG0880043462.01 | 0.860548 | 1.913379e-63 | 5.250070e-60 |
| MsG0880043462.01 | MsG0880045840.01 | 0.861516 | 9.710424e-64 | 2.755089e-60 |
| MsG0880043462.01 | MsG0880046798.01 | 0.821352 | 4.225543e-53 | 3.429523e-50 |
| MsG0480023734.01 | MsG0880043462.01 | 0.842364 | 2.705891e-58 | 4.093478e-55 |
| MsG0380017984.01 | MsG0880043462.01 | 0.867788 | 1.056718e-65 | 3.734980e-62 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043462.01.T01 | MTR_8g036080 | 97.772 | 404 | 9 | 0 | 1 | 404 | 1 | 404 | 0.0 | 810 |
| MsG0880043462.01.T01 | MTR_7g075030 | 78.660 | 403 | 81 | 4 | 6 | 404 | 2 | 403 | 0.0 | 637 |
| MsG0880043462.01.T01 | MTR_5g099310 | 36.923 | 260 | 145 | 3 | 3 | 262 | 2 | 242 | 1.26e-43 | 163 |
| MsG0880043462.01.T01 | MTR_5g099310 | 36.923 | 260 | 145 | 3 | 3 | 262 | 2 | 242 | 1.48e-43 | 163 |
| MsG0880043462.01.T01 | MTR_4g124430 | 34.354 | 294 | 154 | 10 | 82 | 370 | 114 | 373 | 6.24e-29 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043462.01.T01 | AT1G01960 | 72.682 | 399 | 100 | 5 | 6 | 404 | 2 | 391 | 0.0 | 561 |
| MsG0880043462.01.T01 | AT3G60860 | 72.457 | 403 | 104 | 4 | 6 | 403 | 2 | 402 | 4.66e-176 | 536 |
| MsG0880043462.01.T01 | AT4G35380 | 31.931 | 404 | 218 | 7 | 3 | 404 | 2 | 350 | 2.79e-55 | 197 |
| MsG0880043462.01.T01 | AT4G38200 | 30.693 | 404 | 202 | 7 | 3 | 404 | 2 | 329 | 1.77e-49 | 181 |
| MsG0880043462.01.T01 | AT3G43300 | 32.931 | 331 | 167 | 12 | 83 | 404 | 103 | 387 | 2.40e-29 | 121 |
| MsG0880043462.01.T01 | AT3G43300 | 32.931 | 331 | 167 | 12 | 83 | 404 | 103 | 387 | 2.77e-29 | 121 |
| MsG0880043462.01.T01 | AT3G43300 | 32.931 | 331 | 167 | 12 | 83 | 404 | 103 | 387 | 3.07e-29 | 121 |
Find 113 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCGGACCGGGCGTTTC+CGG | 0.257010 | 8:+25197495 | None:intergenic |
| TGCGGATCCGGAGTCGAATA+AGG | 0.285171 | 8:-25196578 | MsG0880043462.01.T01:CDS |
| GGCTTCGGCCTCGGCCTCTT+CGG | 0.304179 | 8:-25197685 | MsG0880043462.01.T01:CDS |
| CTCATCAATGCCGCTGGTTC+CGG | 0.309238 | 8:-25197417 | MsG0880043462.01.T01:CDS |
| AGTGGTAAGGTTTCGTTGTT+AGG | 0.309965 | 8:-25196880 | MsG0880043462.01.T01:CDS |
| ACCTTACCACTCGGTGTAAC+CGG | 0.311492 | 8:+25196892 | None:intergenic |
| TTCGGTATCGGAGGGTGAAC+CGG | 0.334333 | 8:+25197518 | None:intergenic |
| GTTTGTAAATGTCATGATTT+CGG | 0.336915 | 8:-25197264 | MsG0880043462.01.T01:CDS |
| CTTGGGAATGGCTTCGGCCT+CGG | 0.350853 | 8:-25197694 | None:intergenic |
| AAATGTTAGTGATTGTGTTT+AGG | 0.355039 | 8:-25197071 | MsG0880043462.01.T01:CDS |
| GCTGATCCCGGTGGTAATTC+CGG | 0.361556 | 8:-25197321 | MsG0880043462.01.T01:CDS |
| TTTGTTGGATTCTACTGATA+AGG | 0.367654 | 8:-25196803 | MsG0880043462.01.T01:CDS |
| AAATCATCAACCACGCTTCA+TGG | 0.372859 | 8:-25197617 | MsG0880043462.01.T01:CDS |
| ATATCTTGTGAGTAAGAATA+TGG | 0.375233 | 8:-25197127 | MsG0880043462.01.T01:CDS |
| GTTGGTTGATGGGGAGTTGG+TGG | 0.382174 | 8:-25196713 | MsG0880043462.01.T01:CDS |
| AATCGCATCAACGGCGGGTT+CGG | 0.386150 | 8:+25197380 | None:intergenic |
| GACGAATCCGACTGATTTGT+TGG | 0.391495 | 8:-25196818 | MsG0880043462.01.T01:CDS |
| GGTGGAGAGGGATGATGATT+TGG | 0.391812 | 8:-25196695 | MsG0880043462.01.T01:CDS |
| CGGCGTTAGAGGGGAGGAAA+GGG | 0.397903 | 8:-25196738 | MsG0880043462.01.T01:CDS |
| AGGAAAGGGGAGTTGGTTGA+TGG | 0.398428 | 8:-25196724 | MsG0880043462.01.T01:CDS |
| GAGCTGATTCAGACGGGATT+CGG | 0.400719 | 8:+25197659 | None:intergenic |
| GAAGGAGGCGTCTGCGGATC+CGG | 0.402415 | 8:-25196590 | MsG0880043462.01.T01:CDS |
| TATGTTGGACGCGAAGTATT+GGG | 0.403753 | 8:-25196779 | MsG0880043462.01.T01:CDS |
| TCGATTTCGTTGCGAATTCA+CGG | 0.410387 | 8:-25197189 | MsG0880043462.01.T01:CDS |
| GGAGTTGGTTGATGGGGAGT+TGG | 0.411240 | 8:-25196716 | MsG0880043462.01.T01:CDS |
| GATGATTTGGAAGTTCAGAT+TGG | 0.415426 | 8:-25196682 | MsG0880043462.01.T01:CDS |
| TGATGGGGAGTTGGTGGAGA+GGG | 0.426825 | 8:-25196707 | MsG0880043462.01.T01:CDS |
| GGGCGTTTCCGGTTCGGTAT+CGG | 0.427444 | 8:+25197506 | None:intergenic |
| ATGAAGAATGGATTCGGATT+CGG | 0.429235 | 8:+25197443 | None:intergenic |
| AGAGGGGAGGAAAGGGGAGT+TGG | 0.433254 | 8:-25196731 | MsG0880043462.01.T01:CDS |
| CGAAAGCAATTTCGCCTCAC+CGG | 0.435936 | 8:+25197302 | None:intergenic |
| CGGACCGGGCGTTTCCGGTT+CGG | 0.437413 | 8:+25197500 | None:intergenic |
| ATGATTTGGAAGTTCAGATT+GGG | 0.445855 | 8:-25196681 | MsG0880043462.01.T01:CDS |
| TTCTGAATCGCATCAACGGC+GGG | 0.447267 | 8:+25197375 | None:intergenic |
| GCCACCACAATCGGCTGAAT+CGG | 0.447610 | 8:+25197021 | None:intergenic |
| TATGTATAAGACGGCGTTAG+AGG | 0.449394 | 8:-25196749 | MsG0880043462.01.T01:CDS |
| GAAAGGGGAGTTGGTTGATG+GGG | 0.449864 | 8:-25196722 | MsG0880043462.01.T01:CDS |
| TCCACCATCGTGAAGCGGAC+CGG | 0.450642 | 8:+25197485 | None:intergenic |
| AAGGTAATGCATGATATTGA+TGG | 0.453855 | 8:-25196925 | MsG0880043462.01.T01:CDS |
| ACTGACAACAGAACAATTCC+CGG | 0.460624 | 8:-25197537 | MsG0880043462.01.T01:CDS |
| GCGGATCCGGAGTCGAATAA+GGG | 0.463628 | 8:-25196577 | MsG0880043462.01.T01:CDS |
| AGTGATTGTGTTTAGGAGAA+TGG | 0.464620 | 8:-25197064 | MsG0880043462.01.T01:CDS |
| GAGAGGATGAAGAATGGATT+CGG | 0.466744 | 8:+25197437 | None:intergenic |
| TGTCCACTTGGGAATGGCTT+CGG | 0.466814 | 8:-25197700 | None:intergenic |
| ATGTATAAGACGGCGTTAGA+GGG | 0.469012 | 8:-25196748 | MsG0880043462.01.T01:CDS |
| GCTTTCGAAAATGATTGAAT+CGG | 0.470780 | 8:-25197286 | MsG0880043462.01.T01:CDS |
| CCACCATCGTGAAGCGGACC+GGG | 0.473465 | 8:+25197486 | None:intergenic |
| TTCTACTGATAAGGATATGT+TGG | 0.475219 | 8:-25196794 | MsG0880043462.01.T01:CDS |
| TCGGTATCGGAGGGTGAACC+GGG | 0.477526 | 8:+25197519 | None:intergenic |
| TTCACCCTCCGATACCGAAC+CGG | 0.479046 | 8:-25197514 | MsG0880043462.01.T01:CDS |
| ATCAATTCAGCCACCACAAT+CGG | 0.479561 | 8:+25197012 | None:intergenic |
| TTCGGCTTCCGAAGAGGCCG+AGG | 0.484998 | 8:+25197677 | None:intergenic |
| CTTCGCGGTGAAGCTGATCC+CGG | 0.488062 | 8:-25197333 | MsG0880043462.01.T01:CDS |
| ATATGTTGGACGCGAAGTAT+TGG | 0.490424 | 8:-25196780 | MsG0880043462.01.T01:CDS |
| TTCAGATTGGGAATAAGTTG+AGG | 0.493753 | 8:-25196669 | MsG0880043462.01.T01:CDS |
| TCCGCTTCACGATGGTGGAC+CGG | 0.494367 | 8:-25197481 | MsG0880043462.01.T01:CDS |
| ATCTTCCCCTTATTCGACTC+CGG | 0.497767 | 8:+25196571 | None:intergenic |
| ACGGCGTTAGAGGGGAGGAA+AGG | 0.510345 | 8:-25196739 | MsG0880043462.01.T01:CDS |
| GGATCCGCAGACGCCTCCTT+CGG | 0.512062 | 8:+25196592 | None:intergenic |
| CCCGGTCCGCTTCACGATGG+TGG | 0.512995 | 8:-25197486 | MsG0880043462.01.T01:CDS |
| GGAAAGGGGAGTTGGTTGAT+GGG | 0.517028 | 8:-25196723 | MsG0880043462.01.T01:CDS |
| CGCCTCACCGGAATTACCAC+CGG | 0.524372 | 8:+25197314 | None:intergenic |
| CATCCTCTCATCAATGCCGC+TGG | 0.525254 | 8:-25197423 | MsG0880043462.01.T01:CDS |
| ACCGCCGAAGGAGGCGTCTG+CGG | 0.525679 | 8:-25196596 | MsG0880043462.01.T01:CDS |
| CGTTTCCGGTTCGGTATCGG+AGG | 0.527551 | 8:+25197509 | None:intergenic |
| TCCGGTTACACCGAGTGGTA+AGG | 0.529391 | 8:-25196893 | MsG0880043462.01.T01:CDS |
| GATTGGGAATAAGTTGAGGA+GGG | 0.529520 | 8:-25196665 | MsG0880043462.01.T01:CDS |
| TTGATGGGGAGTTGGTGGAG+AGG | 0.532218 | 8:-25196708 | MsG0880043462.01.T01:CDS |
| GAGTTTCTGAATCGCATCAA+CGG | 0.532932 | 8:+25197371 | None:intergenic |
| ATCGCGCATGGATTTCTTCG+CGG | 0.534406 | 8:-25197348 | MsG0880043462.01.T01:CDS |
| GTTACTGAGTCTGTCGATGA+TGG | 0.545787 | 8:+25197560 | None:intergenic |
| CAATGACACAGTTTGTGCAA+GGG | 0.553973 | 8:-25196957 | MsG0880043462.01.T01:CDS |
| GGTAAGGTTTCGTTGTTAGG+TGG | 0.558583 | 8:-25196877 | MsG0880043462.01.T01:CDS |
| TCAATGACACAGTTTGTGCA+AGG | 0.560053 | 8:-25196958 | MsG0880043462.01.T01:CDS |
| AGATTGGGAATAAGTTGAGG+AGG | 0.560343 | 8:-25196666 | MsG0880043462.01.T01:CDS |
| GCCTCACCGGAATTACCACC+GGG | 0.561083 | 8:+25197315 | None:intergenic |
| TGTGCAAGGGTTTATTACAA+AGG | 0.567171 | 8:-25196944 | MsG0880043462.01.T01:CDS |
| TCCGCAGACGCCTCCTTCGG+CGG | 0.568065 | 8:+25196595 | None:intergenic |
| ATTCAGAAACTCATCGCGCA+TGG | 0.568604 | 8:-25197360 | MsG0880043462.01.T01:CDS |
| GATACCGAACCGGAAACGCC+CGG | 0.573030 | 8:-25197504 | MsG0880043462.01.T01:CDS |
| AAGGAGGAGCTGATTCAGAC+GGG | 0.574709 | 8:+25197653 | None:intergenic |
| ATTGATGAGAGGATGAAGAA+TGG | 0.576554 | 8:+25197431 | None:intergenic |
| GAAGGAGGAGCTGATTCAGA+CGG | 0.579855 | 8:+25197652 | None:intergenic |
| TCGGTTAGCGAGAATTCGAC+CGG | 0.586775 | 8:+25197462 | None:intergenic |
| ACCGGTCCACCATCGTGAAG+CGG | 0.587587 | 8:+25197480 | None:intergenic |
| TCCGATTCAGCCGATTGTGG+TGG | 0.592938 | 8:-25197022 | MsG0880043462.01.T01:CDS |
| TTTGATGACGCCGGAACCAG+CGG | 0.595490 | 8:+25197407 | None:intergenic |
| AATGGAAGCTGATTCTTCCA+CGG | 0.595886 | 8:-25197046 | MsG0880043462.01.T01:CDS |
| GGAGATTAGTATGTATAAGA+CGG | 0.597416 | 8:-25196758 | MsG0880043462.01.T01:CDS |
| GTCGAATAAGGGGAAGATTG+TGG | 0.602071 | 8:-25196566 | MsG0880043462.01.T01:CDS |
| GGTTCCGATTCAGCCGATTG+TGG | 0.604239 | 8:-25197025 | MsG0880043462.01.T01:CDS |
| ACGGGATTCGGCTTCCGAAG+AGG | 0.604427 | 8:+25197671 | None:intergenic |
| GTTTCCGGTTCGGTATCGGA+GGG | 0.612091 | 8:+25197510 | None:intergenic |
| TTGCATCCGGTTACACCGAG+TGG | 0.614114 | 8:-25196898 | MsG0880043462.01.T01:CDS |
| GAACCAGCGGCATTGATGAG+AGG | 0.614452 | 8:+25197420 | None:intergenic |
| TGATTTCGGTGATGATGCGA+TGG | 0.615626 | 8:-25197250 | MsG0880043462.01.T01:CDS |
| GGCGTTAGAGGGGAGGAAAG+GGG | 0.616708 | 8:-25196737 | MsG0880043462.01.T01:CDS |
| AATGAAGACACCGCCGAAGG+AGG | 0.618518 | 8:-25196605 | MsG0880043462.01.T01:CDS |
| GTAGAATCCAACAAATCAGT+CGG | 0.622474 | 8:+25196811 | None:intergenic |
| TCGTTGTTAGGTGGACATGA+CGG | 0.625110 | 8:-25196868 | MsG0880043462.01.T01:CDS |
| CGGATCCGGAGTCGAATAAG+GGG | 0.625840 | 8:-25196576 | MsG0880043462.01.T01:CDS |
| TGTATAAGACGGCGTTAGAG+GGG | 0.628060 | 8:-25196747 | MsG0880043462.01.T01:CDS |
| AACAACGAAACCTTACCACT+CGG | 0.636601 | 8:+25196883 | None:intergenic |
| ATAAGACGGCGTTAGAGGGG+AGG | 0.638832 | 8:-25196744 | MsG0880043462.01.T01:CDS |
| AATCGGCTGAATCGGAACCG+TGG | 0.649053 | 8:+25197029 | None:intergenic |
| TGCGTTTGAGACGACGACAG+TGG | 0.657353 | 8:-25196845 | MsG0880043462.01.T01:CDS |
| ACGCCCGGTCCGCTTCACGA+TGG | 0.659047 | 8:-25197489 | MsG0880043462.01.T01:CDS |
| TTTCTGAATCGCATCAACGG+CGG | 0.659648 | 8:+25197374 | None:intergenic |
| GTCAATGAAGACACCGCCGA+AGG | 0.663960 | 8:-25196608 | MsG0880043462.01.T01:CDS |
| CGCGGTGAAGCTGATCCCGG+TGG | 0.669625 | 8:-25197330 | MsG0880043462.01.T01:CDS |
| TCCCGGTGGTAATTCCGGTG+AGG | 0.683474 | 8:-25197316 | MsG0880043462.01.T01:CDS |
| GAATATGGTGAATCAGACAA+CGG | 0.729664 | 8:-25197112 | MsG0880043462.01.T01:CDS |
| GGCTGAATTGATGAAGCCAG+CGG | 0.739234 | 8:-25197001 | MsG0880043462.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATGTTAGTGATTGTGTTT+AGG | - | Chr8:25197060-25197079 | MsG0880043462.01.T01:CDS | 25.0% |
| ! | ATATCTTGTGAGTAAGAATA+TGG | - | Chr8:25197004-25197023 | MsG0880043462.01.T01:CDS | 25.0% |
| ! | GTTTGTAAATGTCATGATTT+CGG | - | Chr8:25196867-25196886 | MsG0880043462.01.T01:CDS | 25.0% |
| !!! | ATTGTTTGCTTTTGATAGTT+AGG | - | Chr8:25196967-25196986 | MsG0880043462.01.T01:CDS | 25.0% |
| !!! | CTCATTTTATGTTCGTTTTT+AGG | - | Chr8:25197653-25197672 | MsG0880043462.01.T01:CDS | 25.0% |
| AAGGTAATGCATGATATTGA+TGG | - | Chr8:25197206-25197225 | MsG0880043462.01.T01:CDS | 30.0% | |
| GCTTTCGAAAATGATTGAAT+CGG | - | Chr8:25196845-25196864 | MsG0880043462.01.T01:CDS | 30.0% | |
| GGAGATTAGTATGTATAAGA+CGG | - | Chr8:25197373-25197392 | MsG0880043462.01.T01:CDS | 30.0% | |
| TTCTACTGATAAGGATATGT+TGG | - | Chr8:25197337-25197356 | MsG0880043462.01.T01:CDS | 30.0% | |
| TTTGTTGGATTCTACTGATA+AGG | - | Chr8:25197328-25197347 | MsG0880043462.01.T01:CDS | 30.0% | |
| ! | ATGATTTGGAAGTTCAGATT+GGG | - | Chr8:25197450-25197469 | MsG0880043462.01.T01:CDS | 30.0% |
| !! | TTGATGATTTTGTTTAGTGC+AGG | + | Chr8:25196504-25196523 | None:intergenic | 30.0% |
| !!! | GTTTTTAGGACTTGATTTAG+AGG | - | Chr8:25197667-25197686 | MsG0880043462.01.T01:CDS | 30.0% |
| AGTGATTGTGTTTAGGAGAA+TGG | - | Chr8:25197067-25197086 | MsG0880043462.01.T01:CDS | 35.0% | |
| ATTGATGAGAGGATGAAGAA+TGG | + | Chr8:25196703-25196722 | None:intergenic | 35.0% | |
| GAATATGGTGAATCAGACAA+CGG | - | Chr8:25197019-25197038 | MsG0880043462.01.T01:CDS | 35.0% | |
| GTAGAATCCAACAAATCAGT+CGG | + | Chr8:25197323-25197342 | None:intergenic | 35.0% | |
| TGTGCAAGGGTTTATTACAA+AGG | - | Chr8:25197187-25197206 | MsG0880043462.01.T01:CDS | 35.0% | |
| TTCAGATTGGGAATAAGTTG+AGG | - | Chr8:25197462-25197481 | MsG0880043462.01.T01:CDS | 35.0% | |
| ! | AGAGTTGTTGAAGATTTTGC+TGG | - | Chr8:25197592-25197611 | MsG0880043462.01.T01:CDS | 35.0% |
| ! | ATGAAGAATGGATTCGGATT+CGG | + | Chr8:25196691-25196710 | None:intergenic | 35.0% |
| ! | GATGATTTGGAAGTTCAGAT+TGG | - | Chr8:25197449-25197468 | MsG0880043462.01.T01:CDS | 35.0% |
| ! | TATTGATGGAGTTTTGCATC+CGG | - | Chr8:25197220-25197239 | MsG0880043462.01.T01:CDS | 35.0% |
| !! | TGATTTTGTTTAGTGCAGGA+AGG | + | Chr8:25196500-25196519 | None:intergenic | 35.0% |
| AAATCATCAACCACGCTTCA+TGG | - | Chr8:25196514-25196533 | MsG0880043462.01.T01:CDS | 40.0% | |
| AACAACGAAACCTTACCACT+CGG | + | Chr8:25197251-25197270 | None:intergenic | 40.0% | |
| ACTGACAACAGAACAATTCC+CGG | - | Chr8:25196594-25196613 | MsG0880043462.01.T01:CDS | 40.0% | |
| AGTGGTAAGGTTTCGTTGTT+AGG | - | Chr8:25197251-25197270 | MsG0880043462.01.T01:CDS | 40.0% | |
| ATATGTTGGACGCGAAGTAT+TGG | - | Chr8:25197351-25197370 | MsG0880043462.01.T01:CDS | 40.0% | |
| ATCAATTCAGCCACCACAAT+CGG | + | Chr8:25197122-25197141 | None:intergenic | 40.0% | |
| ATGTATAAGACGGCGTTAGA+GGG | - | Chr8:25197383-25197402 | MsG0880043462.01.T01:CDS | 40.0% | |
| CAATGACACAGTTTGTGCAA+GGG | - | Chr8:25197174-25197193 | MsG0880043462.01.T01:CDS | 40.0% | |
| GAGTTTCTGAATCGCATCAA+CGG | + | Chr8:25196763-25196782 | None:intergenic | 40.0% | |
| TATGTATAAGACGGCGTTAG+AGG | - | Chr8:25197382-25197401 | MsG0880043462.01.T01:CDS | 40.0% | |
| TCAATGACACAGTTTGTGCA+AGG | - | Chr8:25197173-25197192 | MsG0880043462.01.T01:CDS | 40.0% | |
| TCGATTTCGTTGCGAATTCA+CGG | - | Chr8:25196942-25196961 | MsG0880043462.01.T01:CDS | 40.0% | |
| ! | AAGATTTTGCTGGAGAATGC+TGG | - | Chr8:25197602-25197621 | MsG0880043462.01.T01:CDS | 40.0% |
| ! | AATGGAAGCTGATTCTTCCA+CGG | - | Chr8:25197085-25197104 | MsG0880043462.01.T01:CDS | 40.0% |
| ! | AGATTGGGAATAAGTTGAGG+AGG | - | Chr8:25197465-25197484 | MsG0880043462.01.T01:CDS | 40.0% |
| ! | CTGTTTTCAGAACTAGTGAC+AGG | - | Chr8:25197627-25197646 | MsG0880043462.01.T01:CDS | 40.0% |
| ! | GAGAGGATGAAGAATGGATT+CGG | + | Chr8:25196697-25196716 | None:intergenic | 40.0% |
| ! | GATTGGGAATAAGTTGAGGA+GGG | - | Chr8:25197466-25197485 | MsG0880043462.01.T01:CDS | 40.0% |
| ! | TATGTTGGACGCGAAGTATT+GGG | - | Chr8:25197352-25197371 | MsG0880043462.01.T01:CDS | 40.0% |
| !! | TTTTGTTTAGTGCAGGAAGG+AGG | + | Chr8:25196497-25196516 | None:intergenic | 40.0% |
| ATCTTCCCCTTATTCGACTC+CGG | + | Chr8:25197563-25197582 | None:intergenic | 45.0% | |
| ATTCAGAAACTCATCGCGCA+TGG | - | Chr8:25196771-25196790 | MsG0880043462.01.T01:CDS | 45.0% | |
| GGTAAGGTTTCGTTGTTAGG+TGG | - | Chr8:25197254-25197273 | MsG0880043462.01.T01:CDS | 45.0% | |
| GTCGAATAAGGGGAAGATTG+TGG | - | Chr8:25197565-25197584 | MsG0880043462.01.T01:CDS | 45.0% | |
| GTTACTGAGTCTGTCGATGA+TGG | + | Chr8:25196574-25196593 | None:intergenic | 45.0% | |
| TCGTTGTTAGGTGGACATGA+CGG | - | Chr8:25197263-25197282 | MsG0880043462.01.T01:CDS | 45.0% | |
| TGTATAAGACGGCGTTAGAG+GGG | - | Chr8:25197384-25197403 | MsG0880043462.01.T01:CDS | 45.0% | |
| TTTCTGAATCGCATCAACGG+CGG | + | Chr8:25196760-25196779 | None:intergenic | 45.0% | |
| ! | TGATTTCGGTGATGATGCGA+TGG | - | Chr8:25196881-25196900 | MsG0880043462.01.T01:CDS | 45.0% |
| !! | GACGAATCCGACTGATTTGT+TGG | - | Chr8:25197313-25197332 | MsG0880043462.01.T01:CDS | 45.0% |
| !!! | GTTGAGGAGGGATGCTTTTT+TGG | - | Chr8:25197478-25197497 | MsG0880043462.01.T01:CDS | 45.0% |
| ATCGCGCATGGATTTCTTCG+CGG | - | Chr8:25196783-25196802 | MsG0880043462.01.T01:CDS | 50.0% | |
| CGAAAGCAATTTCGCCTCAC+CGG | + | Chr8:25196832-25196851 | None:intergenic | 50.0% | |
| GAAGCCAGCGGAAAAATCTG+AGG | - | Chr8:25197142-25197161 | MsG0880043462.01.T01:CDS | 50.0% | |
| GGCTGAATTGATGAAGCCAG+CGG | - | Chr8:25197130-25197149 | MsG0880043462.01.T01:CDS | 50.0% | |
| GGTGGAGAGGGATGATGATT+TGG | - | Chr8:25197436-25197455 | MsG0880043462.01.T01:CDS | 50.0% | |
| TCGGTTAGCGAGAATTCGAC+CGG | + | Chr8:25196672-25196691 | None:intergenic | 50.0% | |
| TTCTGAATCGCATCAACGGC+GGG | + | Chr8:25196759-25196778 | None:intergenic | 50.0% | |
| ! | AAGGAGGAGCTGATTCAGAC+GGG | + | Chr8:25196481-25196500 | None:intergenic | 50.0% |
| ! | AGGAAAGGGGAGTTGGTTGA+TGG | - | Chr8:25197407-25197426 | MsG0880043462.01.T01:CDS | 50.0% |
| ! | GAAAGGGGAGTTGGTTGATG+GGG | - | Chr8:25197409-25197428 | MsG0880043462.01.T01:CDS | 50.0% |
| ! | GAAGGAGGAGCTGATTCAGA+CGG | + | Chr8:25196482-25196501 | None:intergenic | 50.0% |
| ! | GAGCTGATTCAGACGGGATT+CGG | + | Chr8:25196475-25196494 | None:intergenic | 50.0% |
| ! | GGAAAGGGGAGTTGGTTGAT+GGG | - | Chr8:25197408-25197427 | MsG0880043462.01.T01:CDS | 50.0% |
| ! | TCCACCTCAGATTTTTCCGC+TGG | + | Chr8:25197149-25197168 | None:intergenic | 50.0% |
| !! | ACCTTACCACTCGGTGTAAC+CGG | + | Chr8:25197242-25197261 | None:intergenic | 50.0% |
| !!! | TTCGGCGATTTTGATGACGC+CGG | + | Chr8:25196736-25196755 | None:intergenic | 50.0% |
| AATCGGCTGAATCGGAACCG+TGG | + | Chr8:25197105-25197124 | None:intergenic | 55.0% | |
| AATGAAGACACCGCCGAAGG+AGG | - | Chr8:25197526-25197545 | MsG0880043462.01.T01:CDS | 55.0% | |
| ATAAGACGGCGTTAGAGGGG+AGG | - | Chr8:25197387-25197406 | MsG0880043462.01.T01:CDS | 55.0% | |
| CATCCTCTCATCAATGCCGC+TGG | - | Chr8:25196708-25196727 | MsG0880043462.01.T01:CDS | 55.0% | |
| CGGATCCGGAGTCGAATAAG+GGG | - | Chr8:25197555-25197574 | MsG0880043462.01.T01:CDS | 55.0% | |
| GCCACCACAATCGGCTGAAT+CGG | + | Chr8:25197113-25197132 | None:intergenic | 55.0% | |
| GCCAGCGGAAAAATCTGAGG+TGG | - | Chr8:25197145-25197164 | MsG0880043462.01.T01:CDS | 55.0% | |
| GCGGATCCGGAGTCGAATAA+GGG | - | Chr8:25197554-25197573 | MsG0880043462.01.T01:CDS | 55.0% | |
| GCTGATCCCGGTGGTAATTC+CGG | - | Chr8:25196810-25196829 | MsG0880043462.01.T01:CDS | 55.0% | |
| GGTTCCGATTCAGCCGATTG+TGG | - | Chr8:25197106-25197125 | MsG0880043462.01.T01:CDS | 55.0% | |
| GTCAATGAAGACACCGCCGA+AGG | - | Chr8:25197523-25197542 | MsG0880043462.01.T01:CDS | 55.0% | |
| TCCGATTCAGCCGATTGTGG+TGG | - | Chr8:25197109-25197128 | MsG0880043462.01.T01:CDS | 55.0% | |
| TCCGGTTACACCGAGTGGTA+AGG | - | Chr8:25197238-25197257 | MsG0880043462.01.T01:CDS | 55.0% | |
| TGCGGATCCGGAGTCGAATA+AGG | - | Chr8:25197553-25197572 | MsG0880043462.01.T01:CDS | 55.0% | |
| TTCACCCTCCGATACCGAAC+CGG | - | Chr8:25196617-25196636 | MsG0880043462.01.T01:CDS | 55.0% | |
| TTGCATCCGGTTACACCGAG+TGG | - | Chr8:25197233-25197252 | MsG0880043462.01.T01:CDS | 55.0% | |
| ! | AATCGCATCAACGGCGGGTT+CGG | + | Chr8:25196754-25196773 | None:intergenic | 55.0% |
| ! | CGTGTTTTCGCCATGAAGCG+TGG | + | Chr8:25196527-25196546 | None:intergenic | 55.0% |
| ! | TGCGTTTGAGACGACGACAG+TGG | - | Chr8:25197286-25197305 | MsG0880043462.01.T01:CDS | 55.0% |
| ! | TTCGGTATCGGAGGGTGAAC+CGG | + | Chr8:25196616-25196635 | None:intergenic | 55.0% |
| !! | CTCATCAATGCCGCTGGTTC+CGG | - | Chr8:25196714-25196733 | MsG0880043462.01.T01:CDS | 55.0% |
| !! | GAACCAGCGGCATTGATGAG+AGG | + | Chr8:25196714-25196733 | None:intergenic | 55.0% |
| !! | GGAGTTGGTTGATGGGGAGT+TGG | - | Chr8:25197415-25197434 | MsG0880043462.01.T01:CDS | 55.0% |
| !! | GTTGGTTGATGGGGAGTTGG+TGG | - | Chr8:25197418-25197437 | MsG0880043462.01.T01:CDS | 55.0% |
| !! | GTTTCCGGTTCGGTATCGGA+GGG | + | Chr8:25196624-25196643 | None:intergenic | 55.0% |
| !! | TGATGGGGAGTTGGTGGAGA+GGG | - | Chr8:25197424-25197443 | MsG0880043462.01.T01:CDS | 55.0% |
| !! | TTGATGGGGAGTTGGTGGAG+AGG | - | Chr8:25197423-25197442 | MsG0880043462.01.T01:CDS | 55.0% |
| !! | TTTGATGACGCCGGAACCAG+CGG | + | Chr8:25196727-25196746 | None:intergenic | 55.0% |
| ACCGGTCCACCATCGTGAAG+CGG | + | Chr8:25196654-25196673 | None:intergenic | 60.0% | |
| ACGGCGTTAGAGGGGAGGAA+AGG | - | Chr8:25197392-25197411 | MsG0880043462.01.T01:CDS | 60.0% | |
| ACGGGATTCGGCTTCCGAAG+AGG | + | Chr8:25196463-25196482 | None:intergenic | 60.0% | |
| AGAGGGGAGGAAAGGGGAGT+TGG | - | Chr8:25197400-25197419 | MsG0880043462.01.T01:CDS | 60.0% | |
| CGCCTCACCGGAATTACCAC+CGG | + | Chr8:25196820-25196839 | None:intergenic | 60.0% | |
| CGGCGTTAGAGGGGAGGAAA+GGG | - | Chr8:25197393-25197412 | MsG0880043462.01.T01:CDS | 60.0% | |
| CTTCGCGGTGAAGCTGATCC+CGG | - | Chr8:25196798-25196817 | MsG0880043462.01.T01:CDS | 60.0% | |
| GATACCGAACCGGAAACGCC+CGG | - | Chr8:25196627-25196646 | MsG0880043462.01.T01:CDS | 60.0% | |
| GCCTCACCGGAATTACCACC+GGG | + | Chr8:25196819-25196838 | None:intergenic | 60.0% | |
| GGCGTTAGAGGGGAGGAAAG+GGG | - | Chr8:25197394-25197413 | MsG0880043462.01.T01:CDS | 60.0% | |
| TCCACCATCGTGAAGCGGAC+CGG | + | Chr8:25196649-25196668 | None:intergenic | 60.0% | |
| TCCCGGTGGTAATTCCGGTG+AGG | - | Chr8:25196815-25196834 | MsG0880043462.01.T01:CDS | 60.0% | |
| ! | TCGGTATCGGAGGGTGAACC+GGG | + | Chr8:25196615-25196634 | None:intergenic | 60.0% |
| !! | CGTTTCCGGTTCGGTATCGG+AGG | + | Chr8:25196625-25196644 | None:intergenic | 60.0% |
| !! | GGGCGTTTCCGGTTCGGTAT+CGG | + | Chr8:25196628-25196647 | None:intergenic | 60.0% |
| !! | TCCGCTTCACGATGGTGGAC+CGG | - | Chr8:25196650-25196669 | MsG0880043462.01.T01:CDS | 60.0% |
| CCACCATCGTGAAGCGGACC+GGG | + | Chr8:25196648-25196667 | None:intergenic | 65.0% | |
| GGATCCGCAGACGCCTCCTT+CGG | + | Chr8:25197542-25197561 | None:intergenic | 65.0% | |
| TGAAGCGGACCGGGCGTTTC+CGG | + | Chr8:25196639-25196658 | None:intergenic | 65.0% | |
| TTCGGCTTCCGAAGAGGCCG+AGG | + | Chr8:25196457-25196476 | None:intergenic | 65.0% | |
| !! | GAAGGAGGCGTCTGCGGATC+CGG | - | Chr8:25197541-25197560 | MsG0880043462.01.T01:CDS | 65.0% |
| ACGCCCGGTCCGCTTCACGA+TGG | - | Chr8:25196642-25196661 | MsG0880043462.01.T01:CDS | 70.0% | |
| CCCGGTCCGCTTCACGATGG+TGG | - | Chr8:25196645-25196664 | MsG0880043462.01.T01:CDS | 70.0% | |
| CGCGGTGAAGCTGATCCCGG+TGG | - | Chr8:25196801-25196820 | MsG0880043462.01.T01:CDS | 70.0% | |
| CGGACCGGGCGTTTCCGGTT+CGG | + | Chr8:25196634-25196653 | None:intergenic | 70.0% | |
| GGCTTCGGCCTCGGCCTCTT+CGG | - | Chr8:25196446-25196465 | MsG0880043462.01.T01:CDS | 70.0% | |
| TCCGCAGACGCCTCCTTCGG+CGG | + | Chr8:25197539-25197558 | None:intergenic | 70.0% | |
| !! | ACCGCCGAAGGAGGCGTCTG+CGG | - | Chr8:25197535-25197554 | MsG0880043462.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 25196444 | 25197709 | 25196444 | ID=MsG0880043462.01;Name=MsG0880043462.01 |
| Chr8 | mRNA | 25196444 | 25197709 | 25196444 | ID=MsG0880043462.01.T01;Parent=MsG0880043462.01;Name=MsG0880043462.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|421 |
| Chr8 | exon | 25196444 | 25197709 | 25196444 | ID=MsG0880043462.01.T01:exon:5061;Parent=MsG0880043462.01.T01 |
| Chr8 | CDS | 25196444 | 25197709 | 25196444 | ID=MsG0880043462.01.T01:cds;Parent=MsG0880043462.01.T01 |
| Gene Sequence |
| Protein sequence |
