AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003413.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003413.01.T01 MTR_1g061220 90.411 803 46 1 1 772 1 803 0.0 1476
MsG0180003413.01.T01 MTR_1g061220 30.069 582 257 18 205 719 354 852 1.15e-34 143
MsG0180003413.01.T01 MTR_1g061220 37.600 250 134 9 201 442 619 854 7.36e-22 102
MsG0180003413.01.T01 MTR_7g103680 30.147 408 165 18 1 310 1 386 5.17e-24 109
MsG0180003413.01.T01 MTR_6g088520 36.296 135 62 1 195 329 20 130 6.75e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 168 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCTTTGTCAAAATTTA+TGG 0.034481 1:+61978851 None:intergenic
TCCTCCTTTGTCAAAGTTTA+TGG 0.038023 1:+61977693 None:intergenic
TGCTCCTCTATCAAAATTTA+TGG 0.072882 1:+61978545 None:intergenic
TGTTCCTATATCAAAATTTA+AGG 0.076586 1:+61979208 None:intergenic
CATCCAGGTATCTTTATTAT+AGG 0.204610 1:+61977942 None:intergenic
TTCATCCTTGTCAAGCTTTC+CGG 0.219548 1:+61979582 None:intergenic
TTTGAGGTCAATTGTGAAAA+TGG 0.222272 1:-61980667 MsG0180003413.01.T01:exon
CAGAGGCTGTTTCCCTCATC+TGG 0.229200 1:+61979481 None:intergenic
TTTGGCACAACTGGCTTAAC+AGG 0.230261 1:+61980585 None:intergenic
CTGTTTGTTTCTTCGGTTAT+CGG 0.234149 1:-61980285 MsG0180003413.01.T01:CDS
GCAAATGCTCCATTAGCTTT+TGG 0.252261 1:+61980543 None:intergenic
ATCACAGACAAGGCCGAAAT+TGG 0.256709 1:+61979112 None:intergenic
GTGCTTTGTGAAGATGTATC+TGG 0.264079 1:+61979026 None:intergenic
CTGATAAAGGTCACACCTTT+TGG 0.268543 1:+61980778 None:intergenic
GTACAGATCGGAGCTGATTT+TGG 0.277727 1:+61980567 None:intergenic
GCTTGTGTATCTTCTGTTAA+TGG 0.278571 1:+61978741 None:intergenic
CACGTTTCTTCTTGCCCGTT+GGG 0.282569 1:+61978976 None:intergenic
ATTTATAATCTCTATTGTTT+AGG 0.293017 1:+61981341 None:intergenic
CATGACAATTTGGCAGCTTC+AGG 0.293533 1:+61979239 None:intergenic
GTAGTAGGTTCTGACATAAT+TGG 0.303296 1:+61977733 None:intergenic
AATTACCTTTGTAACATAAC+TGG 0.303688 1:+61981017 None:intergenic
AGTTCTGCAGATAGAGAAAA+TGG 0.307309 1:-61978513 MsG0180003413.01.T01:CDS
CCAGACATTGGAGGTGAAAA+TGG 0.312727 1:-61980447 MsG0180003413.01.T01:CDS
CTTGGGGCTTGTGCGTCTTC+AGG 0.316266 1:+61977889 None:intergenic
TTTCTTTGGCTTTGCTTCAT+GGG 0.316341 1:+61978695 None:intergenic
ATCCATGGAATCTCTGCTTC+TGG 0.324507 1:+61980618 None:intergenic
ATTCTTATTGCTGTTCCCTT+TGG 0.324542 1:+61981137 None:intergenic
TGTTTCATGTTGGAGTGGTC+TGG 0.332066 1:-61980394 MsG0180003413.01.T01:CDS
GGACCTTTGACATGACAATT+TGG 0.334310 1:+61979229 None:intergenic
AGGAAGTATGTGAGAAGAAA+AGG 0.340987 1:-61979317 MsG0180003413.01.T01:CDS
GAATGATCTGTTTGTTTCTT+CGG 0.349449 1:-61980292 MsG0180003413.01.T01:CDS
TCTCACATACTTCCTCTTGC+CGG 0.360845 1:+61979325 None:intergenic
AAAATGATGAAATTGACAAC+TGG 0.366367 1:+61980721 None:intergenic
TGACTTCTACTCCAACAAAA+AGG 0.370126 1:-61977774 MsG0180003413.01.T01:CDS
ATCTGTACTCCAAAAGCTAA+TGG 0.374443 1:-61980552 MsG0180003413.01.T01:CDS
GTGCACCCGTGCAAAGAAAC+TGG 0.375774 1:-61978486 MsG0180003413.01.T01:CDS
GCATGCAGAACTTTCATCTT+CGG 0.380040 1:+61978023 None:intergenic
TCTCTTATCTTGATCTCATT+CGG 0.392901 1:-61981276 MsG0180003413.01.T01:five_prime_UTR
GATTCCGACAGAGGCGGCTT+CGG 0.398871 1:-61980355 MsG0180003413.01.T01:CDS
TCACCTGTCATTTCTGTTGA+AGG 0.400375 1:+61978924 None:intergenic
ACACAGCTAGGAAACATTAA+TGG 0.403209 1:-61980318 MsG0180003413.01.T01:CDS
ATTGGCGTTTCTTTAGAATC+TGG 0.404384 1:+61978075 None:intergenic
CATGAAAGTCTTCATATCAT+AGG 0.405957 1:+61978296 None:intergenic
GTTTCATGTTGGAGTGGTCT+GGG 0.410934 1:-61980393 MsG0180003413.01.T01:CDS
GGACATTCTACAAGAAGTTA+TGG 0.417324 1:+61978566 None:intergenic
CTTGCTACAACAAGCATTGT+CGG 0.420528 1:+61979627 None:intergenic
CTGCTCCAGTTTCTTTGCAC+GGG 0.424491 1:+61978481 None:intergenic
TACAGAAAAGAGGTGTGAAT+TGG 0.432862 1:-61978895 MsG0180003413.01.T01:CDS
TCTTCTGTTAATGGAACGTC+TGG 0.433280 1:+61978750 None:intergenic
GGGTCATAGAGCTCTTTGTT+TGG 0.434292 1:+61979553 None:intergenic
ACACGTTTCTTCTTGCCCGT+TGG 0.435263 1:+61978975 None:intergenic
TGCTTTGTGAAGATGTATCT+GGG 0.435398 1:+61979027 None:intergenic
TCATAGAGCTCTTTGTTTGG+TGG 0.443403 1:+61979556 None:intergenic
CACCTGTCATTTCTGTTGAA+GGG 0.444667 1:+61978925 None:intergenic
TCTGGGGCTTGTGTATCTTC+TGG 0.447690 1:+61979044 None:intergenic
CATTCCAAAGATTGACCAAA+AGG 0.447735 1:-61980793 MsG0180003413.01.T01:five_prime_UTR
CTGCCGGGTTCATAAAAGTC+TGG 0.454982 1:+61978421 None:intergenic
ACAGAAATAAGAGAAATTCA+TGG 0.457011 1:+61981186 None:intergenic
AGGCAGTATGTGAGAAGGTC+AGG 0.457320 1:-61978657 MsG0180003413.01.T01:CDS
TCTGCTCCAGTTTCTTTGCA+CGG 0.458053 1:+61978480 None:intergenic
GCTTGTGCGTCTTCAGGTAA+TGG 0.459408 1:+61977895 None:intergenic
TTATTATAGGCAAGGCCTGC+AGG 0.460324 1:+61977955 None:intergenic
TGCTGTTTCTTCACAACTGA+AGG 0.461937 1:-61979515 MsG0180003413.01.T01:CDS
GCCGAAATTGGTTTCTTGTA+CGG 0.462538 1:+61979124 None:intergenic
AGAAACTGGAGCAGAAATAC+AGG 0.467440 1:-61978472 MsG0180003413.01.T01:CDS
ATGCAACGTTTCGTTAATGA+AGG 0.470210 1:+61981421 None:intergenic
GCCGTACAAGAAACCAATTT+CGG 0.471219 1:-61979125 MsG0180003413.01.T01:CDS
AACGCCAATGAGAAGGTTCT+CGG 0.472093 1:-61978061 MsG0180003413.01.T01:CDS
TTCTTTGGCTTTGCTTCATG+GGG 0.474459 1:+61978696 None:intergenic
ACAAAAGACGAGAGTTCTAC+AGG 0.477940 1:-61979188 MsG0180003413.01.T01:CDS
GTTCATTATTACAAAATGAC+AGG 0.480235 1:+61978385 None:intergenic
ACTGGCTTAACAGGGGTTGA+AGG 0.483453 1:+61980594 None:intergenic
AGCCAGAAGCAGAGATTCCA+TGG 0.486921 1:-61980620 MsG0180003413.01.T01:CDS
GAAGTATCCGGAGACTTGCC+TGG 0.487602 1:-61978609 MsG0180003413.01.T01:CDS
TCTTCACAAAGCACCAGCCC+CGG 0.488289 1:-61979017 MsG0180003413.01.T01:CDS
CGGTTATCGGTGACAATTCG+AGG 0.492782 1:-61980272 MsG0180003413.01.T01:CDS
TTGTAGCAAGAGAAATTATG+AGG 0.493167 1:-61979614 MsG0180003413.01.T01:CDS
CCAAGTACATGTCCTTCAAA+AGG 0.500460 1:-61977871 MsG0180003413.01.T01:CDS
CTTCACAAAGCACCAGCCCC+GGG 0.500931 1:-61979016 MsG0180003413.01.T01:CDS
GAAATACAGGAAATTAATGT+AGG 0.503138 1:-61978459 MsG0180003413.01.T01:CDS
AACTCAAAAGAAAACCCAAC+GGG 0.504842 1:-61978990 MsG0180003413.01.T01:CDS
CCTTCAAAAGGTAATCATCC+TGG 0.505759 1:-61977859 MsG0180003413.01.T01:CDS
TATGAAGACTTTCATGAAGC+AGG 0.508095 1:-61978289 MsG0180003413.01.T01:CDS
AGAGGCTGTTTCCCTCATCT+GGG 0.510697 1:+61979482 None:intergenic
AAATTCTATACTTCACAACT+AGG 0.511627 1:+61981311 None:intergenic
AGAAAAGCCCAAGTGTCAAA+AGG 0.513964 1:-61978677 MsG0180003413.01.T01:CDS
GGTAAAATCTGTGACAAGAC+AGG 0.514296 1:-61980426 MsG0180003413.01.T01:CDS
ACAGCAGCAAATTCTACGGC+AGG 0.514860 1:+61979532 None:intergenic
CTTATCTTGATCTCATTCGG+TGG 0.515005 1:-61981273 MsG0180003413.01.T01:five_prime_UTR
TAAAGATACCTGGATGAAGC+AGG 0.519052 1:-61977935 MsG0180003413.01.T01:CDS
GAGGGAAACAGCCTCTGTAC+TGG 0.520428 1:-61979475 MsG0180003413.01.T01:intron
CAAGCAAAAGAAAACACAAC+CGG 0.521836 1:-61979344 MsG0180003413.01.T01:CDS
TATAATCTCTATTGTTTAGG+TGG 0.526448 1:+61981344 None:intergenic
TCCTTGTCAAGCTTTCCGGC+AGG 0.528740 1:+61979586 None:intergenic
CCGCAGGTACAATCCCATCA+TGG 0.530008 1:+61980478 None:intergenic
TTATCTTGATCTCATTCGGT+GGG 0.537160 1:-61981272 MsG0180003413.01.T01:five_prime_UTR
TCCACTCCTACAGAAGTATC+CGG 0.537207 1:-61978621 MsG0180003413.01.T01:CDS
CCTTGTCAAGCTTTCCGGCA+GGG 0.538324 1:+61979587 None:intergenic
AAATCCGAGAACCTTCTCAT+TGG 0.539282 1:+61978057 None:intergenic
CAGAAATAAGAGAAATTCAT+GGG 0.540590 1:+61981187 None:intergenic
AATTCTTGTGCAACACAGCT+AGG 0.541493 1:-61980330 MsG0180003413.01.T01:CDS
CGCAGGTACAATCCCATCAT+GGG 0.542135 1:+61980479 None:intergenic
AATAAGAGAAATTCATGGGA+AGG 0.545107 1:+61981191 None:intergenic
ATGTAATGCCTGCTTCATCC+AGG 0.548384 1:+61977927 None:intergenic
CTGGCTTAACAGGGGTTGAA+GGG 0.550265 1:+61980595 None:intergenic
ACCTGTCATTTCTGTTGAAG+GGG 0.555891 1:+61978926 None:intergenic
AAGATGAAAGTTCTGCATGC+AGG 0.558159 1:-61978020 MsG0180003413.01.T01:CDS
ATAAGAGAAATTCATGGGAA+GGG 0.559213 1:+61981192 None:intergenic
ACAGGGGTTGAAGGGATCCA+TGG 0.562727 1:+61980603 None:intergenic
AAGTCAAAAGAAAAGCTGAC+TGG 0.563069 1:-61978183 MsG0180003413.01.T01:CDS
AATTATGAGGATGACCCTGC+CGG 0.563081 1:-61979601 MsG0180003413.01.T01:CDS
ACTGCAGCAGTTTCTTTGCA+CGG 0.563638 1:+61978345 None:intergenic
AGGTATCTTTATTATAGGCA+AGG 0.564516 1:+61977947 None:intergenic
TGAATCTTTGATTCCGACAG+AGG 0.565437 1:-61980364 MsG0180003413.01.T01:CDS
AGAAAATTCGGAGATTCCAA+AGG 0.570705 1:-61981153 MsG0180003413.01.T01:five_prime_UTR
AAATGATGAAATTGACAACT+GGG 0.571920 1:+61980722 None:intergenic
CTGCCAAATTGTCATGTCAA+AGG 0.572693 1:-61979232 MsG0180003413.01.T01:CDS
GCGGCTGCAATTCCAGACAT+TGG 0.574369 1:-61980459 MsG0180003413.01.T01:CDS
GAGAATGTTTCATGTTGGAG+TGG 0.574621 1:-61980399 MsG0180003413.01.T01:CDS
GTGAATTGACTACAGAAAAG+AGG 0.574926 1:-61978905 MsG0180003413.01.T01:CDS
TCCGGATACTTCTGTAGGAG+TGG 0.575327 1:+61978620 None:intergenic
ATGTCTGGAATTGCAGCCGC+AGG 0.581519 1:+61980462 None:intergenic
GCCCCTTCAACAGAAATGAC+AGG 0.581965 1:-61978927 MsG0180003413.01.T01:CDS
GACAATTCGAGGGATCCTCA+TGG 0.583780 1:-61980261 MsG0180003413.01.T01:CDS
AAAGAAAATGAAGTTACTGA+TGG 0.583895 1:-61978780 MsG0180003413.01.T01:CDS
TTCGCCGAAGCCGCCTCTGT+CGG 0.585184 1:+61980351 None:intergenic
TCTTTGCACGGATGCACAGT+TGG 0.585259 1:+61978357 None:intergenic
CTAAAGAAACGCCAATGAGA+AGG 0.587954 1:-61978068 MsG0180003413.01.T01:CDS
GCAGTAGAGGAAACACCTGC+AGG 0.589231 1:-61977970 MsG0180003413.01.T01:CDS
GAAAATTCGGAGATTCCAAA+GGG 0.591032 1:-61981152 MsG0180003413.01.T01:five_prime_UTR
GAGATTTACAACCCAGATGA+GGG 0.592134 1:-61979493 MsG0180003413.01.T01:CDS
GAGGTCAATTGTGAAAATGG+AGG 0.592457 1:-61980664 MsG0180003413.01.T01:exon
TCAATTGTGAAAATGGAGGT+AGG 0.592487 1:-61980660 MsG0180003413.01.T01:exon
ATGTCCATAAACTTTGACAA+AGG 0.595423 1:-61977697 MsG0180003413.01.T01:CDS
AAAACAGAGAATCCCATGAT+GGG 0.598416 1:-61980491 MsG0180003413.01.T01:CDS
TTGCCTATAATAAAGATACC+TGG 0.598898 1:-61977945 MsG0180003413.01.T01:CDS
ATCTTTGATTCCGACAGAGG+CGG 0.599338 1:-61980361 MsG0180003413.01.T01:CDS
GTAATGCAGAAAGTTGATGT+AGG 0.600448 1:-61978324 MsG0180003413.01.T01:CDS
ACAAGTATGAGAGAAGAAAA+CGG 0.600945 1:-61978158 MsG0180003413.01.T01:CDS
GCATATTGGCGACGCAGTAG+AGG 0.606722 1:-61977983 MsG0180003413.01.T01:CDS
AGAAACAGCAGCAAATTCTA+CGG 0.607834 1:+61979528 None:intergenic
TCCATAAACTTTGACAAAGG+AGG 0.608491 1:-61977694 MsG0180003413.01.T01:CDS
AAGTCTCCGGATACTTCTGT+AGG 0.608553 1:+61978615 None:intergenic
AAGAAAACACAACCGGCAAG+AGG 0.608641 1:-61979337 MsG0180003413.01.T01:CDS
TCGAGGGATCCTCATGGACA+TGG 0.608905 1:-61980255 MsG0180003413.01.T01:intron
GCAAGAAGAAACGTGTGAGA+AGG 0.610892 1:-61978968 MsG0180003413.01.T01:CDS
TTGGCACAACTGGCTTAACA+GGG 0.611058 1:+61980586 None:intergenic
GGAGATTTACAACCCAGATG+AGG 0.612114 1:-61979494 MsG0180003413.01.T01:CDS
AAGTCTGGATATCATCGTCA+AGG 0.614191 1:+61978436 None:intergenic
GCTGCAATTCCAGACATTGG+AGG 0.615405 1:-61980456 MsG0180003413.01.T01:CDS
CCCTGCCGGAAAGCTTGACA+AGG 0.621556 1:-61979587 MsG0180003413.01.T01:CDS
AAACTCAAAAGAAAACCCAA+CGG 0.623457 1:-61978991 MsG0180003413.01.T01:CDS
AAGCCAAAAGAAAACTCAGA+CGG 0.629100 1:-61977832 MsG0180003413.01.T01:CDS
GGTTATCGGTGACAATTCGA+GGG 0.631568 1:-61980271 MsG0180003413.01.T01:CDS
TGTATCTTCTGGTAATGACA+TGG 0.632070 1:+61979055 None:intergenic
TGTCACCAGTTATGTTACAA+AGG 0.637635 1:-61981022 MsG0180003413.01.T01:intron
AAAATGACAGGAGAACTGAC+TGG 0.640708 1:-61978108 MsG0180003413.01.T01:CDS
GCATGTGTTGAATTCTCACA+TGG 0.641727 1:-61980522 MsG0180003413.01.T01:CDS
TCAAAAGGCAGTATGTGAGA+AGG 0.644099 1:-61978662 MsG0180003413.01.T01:CDS
CCATGATGGGATTGTACCTG+CGG 0.644294 1:-61980478 MsG0180003413.01.T01:CDS
GCTTTGTGAAGATGTATCTG+GGG 0.650532 1:+61979028 None:intergenic
CAGCAGCAAATTCTACGGCA+GGG 0.665832 1:+61979533 None:intergenic
TGGCACAACTGGCTTAACAG+GGG 0.678979 1:+61980587 None:intergenic
TTTCGCTTACCATGTCCATG+AGG 0.701937 1:+61980246 None:intergenic
TTCACAAAGCACCAGCCCCG+GGG 0.712888 1:-61979015 MsG0180003413.01.T01:CDS
TGTGTTGAATTCTCACATGG+TGG 0.717674 1:-61980519 MsG0180003413.01.T01:CDS
GATCAAACATGTGTTTGACG+AGG 0.724339 1:+61981371 None:intergenic
AAGTGTTTAAATCACAGACA+AGG 0.731039 1:+61979102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAATAAAAAAATT+AGG + Chr1:61978278-61978297 None:intergenic 0.0%
!!! AAAAAAAAATCAATTTTTTG+AGG - Chr1:61978452-61978471 MsG0180003413.01.T01:CDS 10.0%
!!! CAATTTTACTTTTTTTTTTT+TGG - Chr1:61978200-61978219 MsG0180003413.01.T01:CDS 10.0%
!! ACTGGTAATATTTATTTAAA+TGG - Chr1:61979108-61979127 MsG0180003413.01.T01:CDS 15.0%
!! ATAGAATCAAAAAATTAAGA+TGG + Chr1:61978176-61978195 None:intergenic 15.0%
!! ATTTATAATCTCTATTGTTT+AGG + Chr1:61977797-61977816 None:intergenic 15.0%
!! AAAGAATGATAGTTATCAAT+TGG - Chr1:61979071-61979090 MsG0180003413.01.T01:CDS 20.0%
!! ATTCATATACAACATTGAAA+AGG + Chr1:61979435-61979454 None:intergenic 20.0%
!! CAAATAAATTTGTACAAAAC+AGG + Chr1:61979297-61979316 None:intergenic 20.0%
!! TGTTCCTATATCAAAATTTA+AGG + Chr1:61979930-61979949 None:intergenic 20.0%
!! TTCATATACAACATTGAAAA+GGG + Chr1:61979434-61979453 None:intergenic 20.0%
!!! AAAATTTATGGAACTTTTAC+TGG + Chr1:61980275-61980294 None:intergenic 20.0%
!!! AATTGATAACTATCATTCTT+TGG + Chr1:61979072-61979091 None:intergenic 20.0%
!!! ATAAGACATTCTATTTGTTT+TGG + Chr1:61979247-61979266 None:intergenic 20.0%
!!! ATTCTTTGGTTAAATCTTTT+CGG + Chr1:61979058-61979077 None:intergenic 20.0%
!!! ATTTCATTTTTTTCTCTGTT+AGG - Chr1:61978295-61978314 MsG0180003413.01.T01:CDS 20.0%
!!! ATTTTACATGATATTGTAGT+AGG + Chr1:61981420-61981439 None:intergenic 20.0%
! AAAATGATGAAATTGACAAC+TGG + Chr1:61978417-61978436 None:intergenic 25.0%
! AAAGAAAATGAAGTTACTGA+TGG - Chr1:61980355-61980374 MsG0180003413.01.T01:CDS 25.0%
! AAATGATGAAATTGACAACT+GGG + Chr1:61978416-61978435 None:intergenic 25.0%
! AAATTCTATACTTCACAACT+AGG + Chr1:61977827-61977846 None:intergenic 25.0%
! AATTACCTTTGTAACATAAC+TGG + Chr1:61978121-61978140 None:intergenic 25.0%
! ACAGAAATAAGAGAAATTCA+TGG + Chr1:61977952-61977971 None:intergenic 25.0%
! ATTTGTCAAACAAAAATGAC+AGG - Chr1:61981015-61981034 MsG0180003413.01.T01:intron 25.0%
! CAGAAATAAGAGAAATTCAT+GGG + Chr1:61977951-61977970 None:intergenic 25.0%
! GAAATACAGGAAATTAATGT+AGG - Chr1:61980676-61980695 MsG0180003413.01.T01:five_prime_UTR 25.0%
! GTTCATTATTACAAAATGAC+AGG + Chr1:61980753-61980772 None:intergenic 25.0%
! TATAATCTCTATTGTTTAGG+TGG + Chr1:61977794-61977813 None:intergenic 25.0%
!! GTTTTCTTTGGTAGAAAATT+CGG - Chr1:61977970-61977989 MsG0180003413.01.T01:CDS 25.0%
!!! AGGTCCTTAAATTTTGATAT+AGG - Chr1:61979923-61979942 MsG0180003413.01.T01:intron 25.0%
!!! AGTTCCATAAATTTTGACAA+AGG - Chr1:61980280-61980299 MsG0180003413.01.T01:CDS 25.0%
!!! ATGTCCATAAATTTTGATAG+AGG - Chr1:61980586-61980605 MsG0180003413.01.T01:CDS 25.0%
!!! CAAGTTTTAAATGTGCATAT+TGG - Chr1:61981138-61981157 MsG0180003413.01.T01:five_prime_UTR 25.0%
!!! GTCATTTTTGTTTGACAAAT+AGG + Chr1:61981015-61981034 None:intergenic 25.0%
!!! TCTCTTATTTCTGTTTTCTT+TGG - Chr1:61977958-61977977 MsG0180003413.01.T01:CDS 25.0%
AAACTCAAAAGAAAACCCAA+CGG - Chr1:61980144-61980163 MsG0180003413.01.T01:intron 30.0%
AAGTGTTTAAATCACAGACA+AGG + Chr1:61980036-61980055 None:intergenic 30.0%
AATAAGAGAAATTCATGGGA+AGG + Chr1:61977947-61977966 None:intergenic 30.0%
ACAAGTATGAGAGAAGAAAA+CGG - Chr1:61980977-61980996 MsG0180003413.01.T01:intron 30.0%
AGGTATCTTTATTATAGGCA+AGG + Chr1:61981191-61981210 None:intergenic 30.0%
ATAAGAGAAATTCATGGGAA+GGG + Chr1:61977946-61977965 None:intergenic 30.0%
ATGTCCATAAACTTTGACAA+AGG - Chr1:61981438-61981457 MsG0180003413.01.T01:five_prime_UTR 30.0%
CATCCAGGTATCTTTATTAT+AGG + Chr1:61981196-61981215 None:intergenic 30.0%
CATGAAAGTCTTCATATCAT+AGG + Chr1:61980842-61980861 None:intergenic 30.0%
TCCTCCTTTGTCAAAATTTA+TGG + Chr1:61980287-61980306 None:intergenic 30.0%
TCTCTTATCTTGATCTCATT+CGG - Chr1:61977859-61977878 MsG0180003413.01.T01:CDS 30.0%
TGAACTGAAAGCTATAATTG+TGG + Chr1:61979378-61979397 None:intergenic 30.0%
TGCTCCTCTATCAAAATTTA+TGG + Chr1:61980593-61980612 None:intergenic 30.0%
TGTACAAAACAGGTGATAAT+GGG + Chr1:61979287-61979306 None:intergenic 30.0%
TTAAATGTAATCACGAGTGT+CGG - Chr1:61979136-61979155 MsG0180003413.01.T01:CDS 30.0%
TTGCCTATAATAAAGATACC+TGG - Chr1:61981190-61981209 MsG0180003413.01.T01:five_prime_UTR 30.0%
TTGTACAAAACAGGTGATAA+TGG + Chr1:61979288-61979307 None:intergenic 30.0%
TTGTAGCAAGAGAAATTATG+AGG - Chr1:61979521-61979540 MsG0180003413.01.T01:CDS 30.0%
! AAAGTCGAAACTTATTGACT+AGG + Chr1:61979407-61979426 None:intergenic 30.0%
! AGAGCTCAATTTTCTGATAA+AGG + Chr1:61978373-61978392 None:intergenic 30.0%
! AGGTAATTATTTTCTACTGC+CGG + Chr1:61980733-61980752 None:intergenic 30.0%
! CATTCTTGAAGATGATTTTG+TGG + Chr1:61980419-61980438 None:intergenic 30.0%
! GAATGATCTGTTTGTTTCTT+CGG - Chr1:61978843-61978862 MsG0180003413.01.T01:CDS 30.0%
! TTGGTTAAATCTTTTCGGTA+TGG + Chr1:61979053-61979072 None:intergenic 30.0%
! TTTATGGAACTTTTACTGGT+TGG + Chr1:61980271-61980290 None:intergenic 30.0%
! TTTGAGGTCAATTGTGAAAA+TGG - Chr1:61978468-61978487 MsG0180003413.01.T01:CDS 30.0%
!! TCCATAAATTTTGACAAAGG+AGG - Chr1:61980283-61980302 MsG0180003413.01.T01:CDS 30.0%
!!! GTTTTGAGAATGTTTCATGT+TGG - Chr1:61978731-61978750 MsG0180003413.01.T01:CDS 30.0%
AAAAACAGAGAATCCCATGA+TGG - Chr1:61978643-61978662 MsG0180003413.01.T01:CDS 35.0%
AAAACACCAGAAAAAAGCCA+AGG - Chr1:61979690-61979709 MsG0180003413.01.T01:intron 35.0%
AAAACAGAGAATCCCATGAT+GGG - Chr1:61978644-61978663 MsG0180003413.01.T01:CDS 35.0%
AACTCAAAAGAAAACCCAAC+GGG - Chr1:61980145-61980164 MsG0180003413.01.T01:intron 35.0%
AAGCCAAAAGAAAACTCAGA+CGG - Chr1:61981303-61981322 MsG0180003413.01.T01:five_prime_UTR 35.0%
AAGTCAAAAGAAAAGCTGAC+TGG - Chr1:61980952-61980971 MsG0180003413.01.T01:intron 35.0%
ACACAGCTAGGAAACATTAA+TGG - Chr1:61978817-61978836 MsG0180003413.01.T01:CDS 35.0%
AGAAAATTCGGAGATTCCAA+AGG - Chr1:61977982-61978001 MsG0180003413.01.T01:CDS 35.0%
AGAAACAGCAGCAAATTCTA+CGG + Chr1:61979610-61979629 None:intergenic 35.0%
AGCTATAATTGTGGAGCAAA+AGG + Chr1:61979369-61979388 None:intergenic 35.0%
AGTTCTGCAGATAGAGAAAA+TGG - Chr1:61980622-61980641 MsG0180003413.01.T01:CDS 35.0%
ATCTGTACTCCAAAAGCTAA+TGG - Chr1:61978583-61978602 MsG0180003413.01.T01:CDS 35.0%
ATGCAACGTTTCGTTAATGA+AGG + Chr1:61977717-61977736 None:intergenic 35.0%
ATTCTGTTCATGTGAGTTAC+AGG + Chr1:61978988-61979007 None:intergenic 35.0%
CAAGCAAAAGAAAACACAAC+CGG - Chr1:61979791-61979810 MsG0180003413.01.T01:intron 35.0%
CATTCCAAAGATTGACCAAA+AGG - Chr1:61978342-61978361 MsG0180003413.01.T01:CDS 35.0%
GAAAATTCGGAGATTCCAAA+GGG - Chr1:61977983-61978002 MsG0180003413.01.T01:CDS 35.0%
GCTTGTGTATCTTCTGTTAA+TGG + Chr1:61980397-61980416 None:intergenic 35.0%
GGACATTCTACAAGAAGTTA+TGG + Chr1:61980572-61980591 None:intergenic 35.0%
GTGAATTGACTACAGAAAAG+AGG - Chr1:61980230-61980249 MsG0180003413.01.T01:intron 35.0%
TATGAAGACTTTCATGAAGC+AGG - Chr1:61980846-61980865 MsG0180003413.01.T01:intron 35.0%
TCAATTGTGAAAATGGAGGT+AGG - Chr1:61978475-61978494 MsG0180003413.01.T01:CDS 35.0%
TCCATAAACTTTGACAAAGG+AGG - Chr1:61981441-61981460 MsG0180003413.01.T01:five_prime_UTR 35.0%
TCCTCCTTTGTCAAAGTTTA+TGG + Chr1:61981445-61981464 None:intergenic 35.0%
TGACTTCTACTCCAACAAAA+AGG - Chr1:61981361-61981380 MsG0180003413.01.T01:five_prime_UTR 35.0%
TGCTTTGTGAAGATGTATCT+GGG + Chr1:61980111-61980130 None:intergenic 35.0%
TGTCACCAGTTATGTTACAA+AGG - Chr1:61978113-61978132 MsG0180003413.01.T01:CDS 35.0%
TTATCTTGATCTCATTCGGT+GGG - Chr1:61977863-61977882 MsG0180003413.01.T01:CDS 35.0%
TTCTGTTCATGTGAGTTACA+GGG + Chr1:61978987-61979006 None:intergenic 35.0%
TTGACTTCTCTAATGACCTT+GGG + Chr1:61979731-61979750 None:intergenic 35.0%
! AGGAAGTATGTGAGAAGAAA+AGG - Chr1:61979818-61979837 MsG0180003413.01.T01:intron 35.0%
! ATTCTTATTGCTGTTCCCTT+TGG + Chr1:61978001-61978020 None:intergenic 35.0%
! CTGTTTGTTTCTTCGGTTAT+CGG - Chr1:61978850-61978869 MsG0180003413.01.T01:CDS 35.0%
! GGTAATTATTTTCTACTGCC+GGG + Chr1:61980732-61980751 None:intergenic 35.0%
! GTAGTAGGTTCTGACATAAT+TGG + Chr1:61981405-61981424 None:intergenic 35.0%
! TACAGAAAAGAGGTGTGAAT+TGG - Chr1:61980240-61980259 MsG0180003413.01.T01:intron 35.0%
! TATCCAGACTTTTATGAACC+CGG - Chr1:61980711-61980730 MsG0180003413.01.T01:five_prime_UTR 35.0%
! TGTATCTTCTGGTAATGACA+TGG + Chr1:61980083-61980102 None:intergenic 35.0%
! TTTGACTTCTCTAATGACCT+TGG + Chr1:61979732-61979751 None:intergenic 35.0%
! TTTTATTCAGACCAGTACAG+AGG + Chr1:61979674-61979693 None:intergenic 35.0%
!! AAATTTTGACAAAGGAGGAG+TGG - Chr1:61980288-61980307 MsG0180003413.01.T01:CDS 35.0%
!! AATCCAACTGCACTTTTTGA+TGG - Chr1:61979983-61980002 MsG0180003413.01.T01:intron 35.0%
!! ATTGGCGTTTCTTTAGAATC+TGG + Chr1:61981063-61981082 None:intergenic 35.0%
!! CTTTTGAAGGACATGTACTT+GGG + Chr1:61981266-61981285 None:intergenic 35.0%
!! GTAATGCAGAAAGTTGATGT+AGG - Chr1:61980811-61980830 MsG0180003413.01.T01:five_prime_UTR 35.0%
!! TTTCTTTGGCTTTGCTTCAT+GGG + Chr1:61980443-61980462 None:intergenic 35.0%
!! TTTTCTCCTTGGCTTTTTTC+TGG + Chr1:61979699-61979718 None:intergenic 35.0%
!! TTTTGAAGGACATGTACTTG+GGG + Chr1:61981265-61981284 None:intergenic 35.0%
!!! TTAGCTTTTGGAGTACAGAT+CGG + Chr1:61978583-61978602 None:intergenic 35.0%
!!! TTCTTTTGACTTATCCCCAA+GGG + Chr1:61980944-61980963 None:intergenic 35.0%
!!! TTTCTTTTGACTTATCCCCA+AGG + Chr1:61980945-61980964 None:intergenic 35.0%
!!! TTTTCTTTGGCTTTGCTTCA+TGG + Chr1:61980444-61980463 None:intergenic 35.0%
AAAATGACAGGAGAACTGAC+TGG - Chr1:61981027-61981046 MsG0180003413.01.T01:five_prime_UTR 40.0%
AAATCCGAGAACCTTCTCAT+TGG + Chr1:61981081-61981100 None:intergenic 40.0%
AAGATGAAAGTTCTGCATGC+AGG - Chr1:61981115-61981134 MsG0180003413.01.T01:five_prime_UTR 40.0%
AAGTCTGGATATCATCGTCA+AGG + Chr1:61980702-61980721 None:intergenic 40.0%
AATTCTTGTGCAACACAGCT+AGG - Chr1:61978805-61978824 MsG0180003413.01.T01:CDS 40.0%
ACAAAAGACGAGAGTTCTAC+AGG - Chr1:61979947-61979966 MsG0180003413.01.T01:intron 40.0%
AGAAAAGCCCAAGTGTCAAA+AGG - Chr1:61980458-61980477 MsG0180003413.01.T01:CDS 40.0%
AGAAACTGGAGCAGAAATAC+AGG - Chr1:61980663-61980682 MsG0180003413.01.T01:exon 40.0%
CCAAGTACATGTCCTTCAAA+AGG - Chr1:61981264-61981283 MsG0180003413.01.T01:five_prime_UTR 40.0%
CCTTCAAAAGGTAATCATCC+TGG - Chr1:61981276-61981295 MsG0180003413.01.T01:five_prime_UTR 40.0%
CTAAAGAAACGCCAATGAGA+AGG - Chr1:61981067-61981086 MsG0180003413.01.T01:five_prime_UTR 40.0%
CTGCCAAATTGTCATGTCAA+AGG - Chr1:61979903-61979922 MsG0180003413.01.T01:intron 40.0%
CTTATCTTGATCTCATTCGG+TGG - Chr1:61977862-61977881 MsG0180003413.01.T01:CDS 40.0%
GAGAATGTTTCATGTTGGAG+TGG - Chr1:61978736-61978755 MsG0180003413.01.T01:CDS 40.0%
GAGATTTACAACCCAGATGA+GGG - Chr1:61979642-61979661 MsG0180003413.01.T01:intron 40.0%
GAGGTCAATTGTGAAAATGG+AGG - Chr1:61978471-61978490 MsG0180003413.01.T01:CDS 40.0%
GATCAAACATGTGTTTGACG+AGG + Chr1:61977767-61977786 None:intergenic 40.0%
GCATGCAGAACTTTCATCTT+CGG + Chr1:61981115-61981134 None:intergenic 40.0%
GCATGTGTTGAATTCTCACA+TGG - Chr1:61978613-61978632 MsG0180003413.01.T01:CDS 40.0%
GCCGTACAAGAAACCAATTT+CGG - Chr1:61980010-61980029 MsG0180003413.01.T01:intron 40.0%
GCTTTGTGAAGATGTATCTG+GGG + Chr1:61980110-61980129 None:intergenic 40.0%
GGACCTTTGACATGACAATT+TGG + Chr1:61979909-61979928 None:intergenic 40.0%
GGTAAAATCTGTGACAAGAC+AGG - Chr1:61978709-61978728 MsG0180003413.01.T01:CDS 40.0%
GTGCTTTGTGAAGATGTATC+TGG + Chr1:61980112-61980131 None:intergenic 40.0%
TAAAGATACCTGGATGAAGC+AGG - Chr1:61981200-61981219 MsG0180003413.01.T01:five_prime_UTR 40.0%
TCAAAAGGCAGTATGTGAGA+AGG - Chr1:61980473-61980492 MsG0180003413.01.T01:CDS 40.0%
TCTACTCCAACAAAAAGGAC+AGG - Chr1:61981366-61981385 MsG0180003413.01.T01:five_prime_UTR 40.0%
TCTTCTGTTAATGGAACGTC+TGG + Chr1:61980388-61980407 None:intergenic 40.0%
TGAATCTTTGATTCCGACAG+AGG - Chr1:61978771-61978790 MsG0180003413.01.T01:CDS 40.0%
TGACTTCTCTAATGACCTTG+GGG + Chr1:61979730-61979749 None:intergenic 40.0%
TGTGTTGAATTCTCACATGG+TGG - Chr1:61978616-61978635 MsG0180003413.01.T01:CDS 40.0%
TTCATCCTTGTCAAGCTTTC+CGG + Chr1:61979556-61979575 None:intergenic 40.0%
TTGGATAATGACACTGACAC+TGG - Chr1:61979090-61979109 MsG0180003413.01.T01:CDS 40.0%
TTTGTGACAAAGACGCACTA+TGG - Chr1:61979332-61979351 MsG0180003413.01.T01:CDS 40.0%
! AATCCACCTGTCCTTTTTGT+TGG + Chr1:61981375-61981394 None:intergenic 40.0%
! ACACCATCAAAAAGTGCAGT+TGG + Chr1:61979989-61980008 None:intergenic 40.0%
! ACATACTGCCTTTTGACACT+TGG + Chr1:61980469-61980488 None:intergenic 40.0%
! ACCTGTCATTTCTGTTGAAG+GGG + Chr1:61980212-61980231 None:intergenic 40.0%
! CACACCTTTTGGTCAATCTT+TGG + Chr1:61978349-61978368 None:intergenic 40.0%
! CACCTGTCATTTCTGTTGAA+GGG + Chr1:61980213-61980232 None:intergenic 40.0%
! CATACTGCCTTTTGACACTT+GGG + Chr1:61980468-61980487 None:intergenic 40.0%
! CCAGGATGATTACCTTTTGA+AGG + Chr1:61981279-61981298 None:intergenic 40.0%
! CTGATAAAGGTCACACCTTT+TGG + Chr1:61978360-61978379 None:intergenic 40.0%
! CTTGCTACAACAAGCATTGT+CGG + Chr1:61979511-61979530 None:intergenic 40.0%
! GCCGAAATTGGTTTCTTGTA+CGG + Chr1:61980014-61980033 None:intergenic 40.0%
! GTGTTTTCTTTTGCTTGAGC+AGG + Chr1:61979788-61979807 None:intergenic 40.0%
! TCACCTGTCATTTCTGTTGA+AGG + Chr1:61980214-61980233 None:intergenic 40.0%
! TCATAGAGCTCTTTGTTTGG+TGG + Chr1:61979582-61979601 None:intergenic 40.0%
! TTGACACTTGGGCTTTTCTT+TGG + Chr1:61980457-61980476 None:intergenic 40.0%
!! AAGGTTCTCGGATTTTGACA+TGG - Chr1:61981086-61981105 MsG0180003413.01.T01:five_prime_UTR 40.0%
!! AGGTTCTCGGATTTTGACAT+GGG - Chr1:61981087-61981106 MsG0180003413.01.T01:five_prime_UTR 40.0%
!! CCTTTTGAAGGACATGTACT+TGG + Chr1:61981267-61981286 None:intergenic 40.0%
!! GATTCTTGCATCACTTTTCC+AGG + Chr1:61980547-61980566 None:intergenic 40.0%
!! GGAACTTTTACTGGTTGGTT+CGG + Chr1:61980266-61980285 None:intergenic 40.0%
!! TGCTGTTTCTTCACAACTGA+AGG - Chr1:61979620-61979639 MsG0180003413.01.T01:CDS 40.0%
!! TTCTTTGGCTTTGCTTCATG+GGG + Chr1:61980442-61980461 None:intergenic 40.0%
!!! GCAAATGCTCCATTAGCTTT+TGG + Chr1:61978595-61978614 None:intergenic 40.0%
!!! GTTTTCTTTTGAGTTTGCCC+CGG + Chr1:61980140-61980159 None:intergenic 40.0%
!!! TCTTTTGACTTATCCCCAAG+GGG + Chr1:61980943-61980962 None:intergenic 40.0%
!!! TTTTCTTTTGAGTTTGCCCC+GGG + Chr1:61980139-61980158 None:intergenic 40.0%
!!! TTTTCTTTTGGCTTTGCTCC+AGG + Chr1:61981297-61981316 None:intergenic 40.0%
AACGCCAATGAGAAGGTTCT+CGG - Chr1:61981074-61981093 MsG0180003413.01.T01:five_prime_UTR 45.0%
AAGAAAACACAACCGGCAAG+AGG - Chr1:61979798-61979817 MsG0180003413.01.T01:intron 45.0%
AAGTCTCCGGATACTTCTGT+AGG + Chr1:61980523-61980542 None:intergenic 45.0%
AATTATGAGGATGACCCTGC+CGG - Chr1:61979534-61979553 MsG0180003413.01.T01:CDS 45.0%
ACTCCAACAAAAAGGACAGG+TGG - Chr1:61981369-61981388 MsG0180003413.01.T01:five_prime_UTR 45.0%
ACTGCAGCAGTTTCTTTGCA+CGG + Chr1:61980793-61980812 None:intergenic 45.0%
ATCACAGACAAGGCCGAAAT+TGG + Chr1:61980026-61980045 None:intergenic 45.0%
ATCCATGGAATCTCTGCTTC+TGG + Chr1:61978520-61978539 None:intergenic 45.0%
ATCTTTGATTCCGACAGAGG+CGG - Chr1:61978774-61978793 MsG0180003413.01.T01:CDS 45.0%
ATGTAATGCCTGCTTCATCC+AGG + Chr1:61981211-61981230 None:intergenic 45.0%
CATGACAATTTGGCAGCTTC+AGG + Chr1:61979899-61979918 None:intergenic 45.0%
CCAGACATTGGAGGTGAAAA+TGG - Chr1:61978688-61978707 MsG0180003413.01.T01:CDS 45.0%
GCAAGAAGAAACGTGTGAGA+AGG - Chr1:61980167-61980186 MsG0180003413.01.T01:intron 45.0%
GGAGATTTACAACCCAGATG+AGG - Chr1:61979641-61979660 MsG0180003413.01.T01:intron 45.0%
GGGTCATAGAGCTCTTTGTT+TGG + Chr1:61979585-61979604 None:intergenic 45.0%
GGTTATCGGTGACAATTCGA+GGG - Chr1:61978864-61978883 MsG0180003413.01.T01:CDS 45.0%
GTTTCATGTTGGAGTGGTCT+GGG - Chr1:61978742-61978761 MsG0180003413.01.T01:CDS 45.0%
TCTCACATACTTCCTCTTGC+CGG + Chr1:61979813-61979832 None:intergenic 45.0%
TCTGCTCCAGTTTCTTTGCA+CGG + Chr1:61980658-61980677 None:intergenic 45.0%
TCTTTCATCGCAGTCGTGTT+CGG + Chr1:61979219-61979238 None:intergenic 45.0%
TGTTTCATGTTGGAGTGGTC+TGG - Chr1:61978741-61978760 MsG0180003413.01.T01:CDS 45.0%
TTATTATAGGCAAGGCCTGC+AGG + Chr1:61981183-61981202 None:intergenic 45.0%
TTTCGCTTACCATGTCCATG+AGG + Chr1:61978892-61978911 None:intergenic 45.0%
! CCATTTTCACCTCCAATGTC+TGG + Chr1:61978691-61978710 None:intergenic 45.0%
! CTTTTGCTTGAGCAGGCTTT+GGG + Chr1:61979781-61979800 None:intergenic 45.0%
! TCGCCGTCTGAGTTTTCTTT+TGG + Chr1:61981309-61981328 None:intergenic 45.0%
! TCTTTTGCTTGAGCAGGCTT+TGG + Chr1:61979782-61979801 None:intergenic 45.0%
! TTGGCACAACTGGCTTAACA+GGG + Chr1:61978552-61978571 None:intergenic 45.0%
! TTTGGCACAACTGGCTTAAC+AGG + Chr1:61978553-61978572 None:intergenic 45.0%
! TTTTGCTTGAGCAGGCTTTG+GGG + Chr1:61979780-61979799 None:intergenic 45.0%
!! GTACAGATCGGAGCTGATTT+TGG + Chr1:61978571-61978590 None:intergenic 45.0%
!! TCCACTCCTACAGAAGTATC+CGG - Chr1:61980514-61980533 MsG0180003413.01.T01:CDS 45.0%
!!! AGCTGGCTTTGGAGTTCTTT+TGG + Chr1:61979756-61979775 None:intergenic 45.0%
!!! CTTTTGACTTATCCCCAAGG+GGG + Chr1:61980942-61980961 None:intergenic 45.0%
!!! GCTGGCTTTGGAGTTCTTTT+GGG + Chr1:61979755-61979774 None:intergenic 45.0%
!!! TTTCTTTTGAGTTTGCCCCG+GGG + Chr1:61980138-61980157 None:intergenic 45.0%
ACACGTTTCTTCTTGCCCGT+TGG + Chr1:61980163-61980182 None:intergenic 50.0%
ACAGCAGCAAATTCTACGGC+AGG + Chr1:61979606-61979625 None:intergenic 50.0%
AGCCAGAAGCAGAGATTCCA+TGG - Chr1:61978515-61978534 MsG0180003413.01.T01:CDS 50.0%
AGGCAGTATGTGAGAAGGTC+AGG - Chr1:61980478-61980497 MsG0180003413.01.T01:CDS 50.0%
AGTCGGTATCTGTTGACACG+TGG - Chr1:61979173-61979192 MsG0180003413.01.T01:CDS 50.0%
CACGTTTCTTCTTGCCCGTT+GGG + Chr1:61980162-61980181 None:intergenic 50.0%
CAGCAGCAAATTCTACGGCA+GGG + Chr1:61979605-61979624 None:intergenic 50.0%
CGCAGGTACAATCCCATCAT+GGG + Chr1:61978659-61978678 None:intergenic 50.0%
CGGTGTTCGACACATGTCAA+CGG + Chr1:61979199-61979218 None:intergenic 50.0%
CGGTTATCGGTGACAATTCG+AGG - Chr1:61978863-61978882 MsG0180003413.01.T01:CDS 50.0%
CTGCCGGGTTCATAAAAGTC+TGG + Chr1:61980717-61980736 None:intergenic 50.0%
CTGCTCCAGTTTCTTTGCAC+GGG + Chr1:61980657-61980676 None:intergenic 50.0%
CTGGCTTAACAGGGGTTGAA+GGG + Chr1:61978543-61978562 None:intergenic 50.0%
CTTCTCTAATGACCTTGGGG+CGG + Chr1:61979727-61979746 None:intergenic 50.0%
GACAATTCGAGGGATCCTCA+TGG - Chr1:61978874-61978893 MsG0180003413.01.T01:CDS 50.0%
GCCCCTTCAACAGAAATGAC+AGG - Chr1:61980208-61980227 MsG0180003413.01.T01:intron 50.0%
GCTGCAATTCCAGACATTGG+AGG - Chr1:61978679-61978698 MsG0180003413.01.T01:CDS 50.0%
GCTTGTGCGTCTTCAGGTAA+TGG + Chr1:61981243-61981262 None:intergenic 50.0%
TCCGGATACTTCTGTAGGAG+TGG + Chr1:61980518-61980537 None:intergenic 50.0%
TCTTTGCACGGATGCACAGT+TGG + Chr1:61980781-61980800 None:intergenic 50.0%
! ACTGGCTTAACAGGGGTTGA+AGG + Chr1:61978544-61978563 None:intergenic 50.0%
! AGAGGCTGTTTCCCTCATCT+GGG + Chr1:61979656-61979675 None:intergenic 50.0%
! CACTTTTCCAGGCAAGTCTC+CGG + Chr1:61980536-61980555 None:intergenic 50.0%
! CCATGATGGGATTGTACCTG+CGG - Chr1:61978657-61978676 MsG0180003413.01.T01:CDS 50.0%
! TCTGGGGCTTGTGTATCTTC+TGG + Chr1:61980094-61980113 None:intergenic 50.0%
! TGGCACAACTGGCTTAACAG+GGG + Chr1:61978551-61978570 None:intergenic 50.0%
!! GGAGCTGATTTTGGCACAAC+TGG + Chr1:61978562-61978581 None:intergenic 50.0%
ACAGGGGTTGAAGGGATCCA+TGG + Chr1:61978535-61978554 None:intergenic 55.0%
CCGCAGGTACAATCCCATCA+TGG + Chr1:61978660-61978679 None:intergenic 55.0%
CCTTGTCAAGCTTTCCGGCA+GGG + Chr1:61979551-61979570 None:intergenic 55.0%
CGTCACAAACCAACCCCCTT+GGG - Chr1:61980926-61980945 MsG0180003413.01.T01:intron 55.0%
GAGGGAAACAGCCTCTGTAC+TGG - Chr1:61979660-61979679 MsG0180003413.01.T01:intron 55.0%
GCAGTAGAGGAAACACCTGC+AGG - Chr1:61981165-61981184 MsG0180003413.01.T01:five_prime_UTR 55.0%
GCATATTGGCGACGCAGTAG+AGG - Chr1:61981152-61981171 MsG0180003413.01.T01:five_prime_UTR 55.0%
GCGGCTGCAATTCCAGACAT+TGG - Chr1:61978676-61978695 MsG0180003413.01.T01:CDS 55.0%
GTCACAAACCAACCCCCTTG+GGG - Chr1:61980927-61980946 MsG0180003413.01.T01:intron 55.0%
GTGCACCCGTGCAAAGAAAC+TGG - Chr1:61980649-61980668 MsG0180003413.01.T01:CDS 55.0%
TCCTTGTCAAGCTTTCCGGC+AGG + Chr1:61979552-61979571 None:intergenic 55.0%
TCGAGGGATCCTCATGGACA+TGG - Chr1:61978880-61978899 MsG0180003413.01.T01:CDS 55.0%
TGACTTATCCCCAAGGGGGT+TGG + Chr1:61980938-61980957 None:intergenic 55.0%
! ATGTCTGGAATTGCAGCCGC+AGG + Chr1:61978676-61978695 None:intergenic 55.0%
! CAGAGGCTGTTTCCCTCATC+TGG + Chr1:61979657-61979676 None:intergenic 55.0%
! GAAGTATCCGGAGACTTGCC+TGG - Chr1:61980526-61980545 MsG0180003413.01.T01:CDS 55.0%
! TCTTCACAAAGCACCAGCCC+CGG - Chr1:61980118-61980137 MsG0180003413.01.T01:intron 55.0%
!! AAGGGGGTTGGTTTGTGACG+GGG + Chr1:61980926-61980945 None:intergenic 55.0%
!! CAAGGGGGTTGGTTTGTGAC+GGG + Chr1:61980927-61980946 None:intergenic 55.0%
!! CCAAGGGGGTTGGTTTGTGA+CGG + Chr1:61980928-61980947 None:intergenic 55.0%
!! GAGAAAAAAGCACCGCCCCA+AGG - Chr1:61979712-61979731 MsG0180003413.01.T01:intron 55.0%
!!! GGGCGGTGCTTTTTTCTCCT+TGG + Chr1:61979710-61979729 None:intergenic 55.0%
CCCTGCCGGAAAGCTTGACA+AGG - Chr1:61979548-61979567 MsG0180003413.01.T01:CDS 60.0%
CCGTCACAAACCAACCCCCT+TGG - Chr1:61980925-61980944 MsG0180003413.01.T01:intron 60.0%
CTTGGGGCTTGTGCGTCTTC+AGG + Chr1:61981249-61981268 None:intergenic 60.0%
GATTCCGACAGAGGCGGCTT+CGG - Chr1:61978780-61978799 MsG0180003413.01.T01:CDS 60.0%
! CGGTGTATCGCGTTGGCAGT+CGG - Chr1:61979156-61979175 MsG0180003413.01.T01:CDS 60.0%
! CTTCACAAAGCACCAGCCCC+GGG - Chr1:61980119-61980138 MsG0180003413.01.T01:intron 60.0%
! TTCACAAAGCACCAGCCCCG+GGG - Chr1:61980120-61980139 MsG0180003413.01.T01:intron 60.0%
!! CGAGTGTCGGTGTATCGCGT+TGG - Chr1:61979149-61979168 MsG0180003413.01.T01:CDS 60.0%
!! GGCTTTGGGGTAGCTGGCTT+TGG + Chr1:61979767-61979786 None:intergenic 60.0%
!! TGAGCAGGCTTTGGGGTAGC+TGG + Chr1:61979773-61979792 None:intergenic 60.0%
!!! TTTTGAGTTTGCCCCGGGGC+TGG + Chr1:61980134-61980153 None:intergenic 60.0%
TTCGCCGAAGCCGCCTCTGT+CGG + Chr1:61978787-61978806 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 61977660 61981497 61977660 ID=MsG0180003413.01;Name=MsG0180003413.01
Chr1 mRNA 61977660 61981497 61977660 ID=MsG0180003413.01.T01;Parent=MsG0180003413.01;Name=MsG0180003413.01.T01;_AED=0.37;_eAED=0.37;_QI=645|0.66|0.5|1|0.66|0.5|4|0|772
Chr1 exon 61977660 61979383 61977660 ID=MsG0180003413.01.T01:exon:49819;Parent=MsG0180003413.01.T01
Chr1 exon 61979476 61979655 61979476 ID=MsG0180003413.01.T01:exon:49818;Parent=MsG0180003413.01.T01
Chr1 exon 61980256 61980840 61980256 ID=MsG0180003413.01.T01:exon:49817;Parent=MsG0180003413.01.T01
Chr1 exon 61981023 61981497 61981023 ID=MsG0180003413.01.T01:exon:49816;Parent=MsG0180003413.01.T01
Chr1 five_prime_UTR 61981023 61981497 61981023 ID=MsG0180003413.01.T01:five_prime_utr;Parent=MsG0180003413.01.T01
Chr1 five_prime_UTR 61980671 61980840 61980671 ID=MsG0180003413.01.T01:five_prime_utr;Parent=MsG0180003413.01.T01
Chr1 CDS 61980256 61980670 61980256 ID=MsG0180003413.01.T01:cds;Parent=MsG0180003413.01.T01
Chr1 CDS 61979476 61979655 61979476 ID=MsG0180003413.01.T01:cds;Parent=MsG0180003413.01.T01
Chr1 CDS 61977660 61979383 61977660 ID=MsG0180003413.01.T01:cds;Parent=MsG0180003413.01.T01
Gene Sequence

>MsG0180003413.01.T01

ATGGAGGTAGGTGAAAATGATAGAAAGAAGCCAGAAGCAGAGATTCCATGGATCCCTTCAACCCCTGTTAAGCCAGTTGTGCCAAAATCAGCTCCGATCTGTACTCCAAAAGCTAATGGAGCATTTGCATGTGTTGAATTCTCACATGGTGGAGAGAAAAACAGAGAATCCCATGATGGGATTGTACCTGCGGCTGCAATTCCAGACATTGGAGGTGAAAATGGTAAAATCTGTGACAAGACAGGTTTTGAGAATGTTTCATGTTGGAGTGGTCTGGGTTTTAATGAATCTTTGATTCCGACAGAGGCGGCTTCGGCGAATTCTTGTGCAACACAGCTAGGAAACATTAATGGATTGAATGATCTGTTTGTTTCTTCGGTTATCGGTGACAATTCGAGGGATCCTCATGGACATGAAACATCCGACAATGCTTGTTGTAGCAAGAGAAATTATGAGGATGACCCTGCCGGAAAGCTTGACAAGGATGAAACTCCACCAAACAAAGAGCTCTATGACCCTGCCGTAGAATTTGCTGCTGTTTCTTCACAACTGAAGGAGATTTACAACCCAGATGAGGGAAACAGCCTCTGTACTGCTACCCCAAAGCCTGCTCAAGCAAAAGAAAACACAACCGGCAAGAGGAAGTATGTGAGAAGAAAAGGATTGAACACTTCTACTACTCAAACAGAAGTGACAAGTGAATTAGCTGAAAAAATACCTGAAGCTGCCAAATTGTCATGTCAAAGGTCCTTAAATTTTGATATAGGAACAAAAGACGAGAGTTCTACAGGCAGAGAAAATGAAAATCCAACTGCACTTTTTGATGGTGTAGCCGTACAAGAAACCAATTTCGGCCTTGTCTGTGATTTAAACACTTCAGTTAAGCATGCATCAAGCAGTTCCATGTCATTACCAGAAGATACACAAGCCCCAGATACATCTTCACAAAGCACCAGCCCCGGGGCAAACTCAAAAGAAAACCCAACGGGCAAGAAGAAACGTGTGAGAAGGAAAATGAACGAGATTTCTGCCCCTTCAACAGAAATGACAGGTGAATTGACTACAGAAAAGAGGTGTGAATTGGCCGAACCAACCAGTAAAAGTTCCATAAATTTTGACAAAGGAGGAGTGGAAGAGAGTTCTGCAGTCAAAGAAAATGCAACTATACATCTGAGCAAAGAAAATGAAGTTACTGATGGAACAAATCCAGACGTTCCATTAACAGAAGATACACAAGCCACAAAATCATCTTCAAGAATGCCCCATGAAGCAAAGCCAAAGAAAAGCCCAAGTGTCAAAAGGCAGTATGTGAGAAGGTCAGGATTGAACAAGTCTTCCACTCCTACAGAAGTATCCGGAGACTTGCCTGGAAAAGTGATGCAAGAATCTGCCATAACTTCTTGTAGAATGTCCATAAATTTTGATAGAGGAGCAAATGATGAAAGTTCTGCAGATAGAGAAAATGGAACTGTGCACCCGTGCAAAGAAACTGGAGCAGAAATACAGGAAATTAATGTAGGCCTTGACGATGATATCCAGACTTTTATGAACCCGGCAGTAGAAAATAATTACCTGTCATTTTGTAATAATGAACAAACTCCAACTGTGCATCCGTGCAAAGAAACTGCTGCAGTAATGCAGAAAGTTGATGTAGGCATTTCCTATGATATGAAGACTTTCATGAAGCAGGCAACAGAAAATAATTACATGTCATTTTGTAGTAATGAACAAAACTCAATTACATCCCCGTCACAAACCAACCCCCTTGGGGATAAGTCAAAAGAAAAGCTGACTGGAAACAAGTATGAGAGAAGAAAACGGTTGAACAAGTCTCCTATTTGTCAAACAAAAATGACAGGAGAACTGACTGGATCAATGATGCCAGATTCTAAAGAAACGCCAATGAGAAGGTTCTCGGATTTTGACATGGGAACCGAAGATGAAAGTTCTGCATGCAGGCAAGTTTTAAATGTGCATATTGGCGACGCAGTAGAGGAAACACCTGCAGGCCTTGCCTATAATAAAGATACCTGGATGAAGCAGGCATTACATAGCTACATGCCATTACCTGAAGACGCACAAGCCCCAAGTACATGTCCTTCAAAAGGTAATCATCCTGGAGCAAAGCCAAAAGAAAACTCAGACGGCGAGAAGAAGTGTGTGAGAAAGAAGAGATCGAAAATGACTTCTACTCCAACAAAAAGGACAGGTGGATTGACTGAACCAATTATGTCAGAACCTACTACAATATCATGTAAAATGTCCATAAACTTTGACAAAGGAGGAAGAGATGAAAGTTATATGTGCAACAAAAGCTGA
Protein sequence

>MsG0180003413.01.T01

MEVGENDRKKPEAEIPWIPSTPVKPVVPKSAPICTPKANGAFACVEFSHGGEKNRESHDGIVPAAAIPDIGGENGKICDKTGFENVSCWSGLGFNESLIPTEAASANSCATQLGNINGLNDLFVSSVIGDNSRDPHGHETSDNACCSKRNYEDDPAGKLDKDETPPNKELYDPAVEFAAVSSQLKEIYNPDEGNSLCTATPKPAQAKENTTGKRKYVRRKGLNTSTTQTEVTSELAEKIPEAAKLSCQRSLNFDIGTKDESSTGRENENPTALFDGVAVQETNFGLVCDLNTSVKHASSSSMSLPEDTQAPDTSSQSTSPGANSKENPTGKKKRVRRKMNEISAPSTEMTGELTTEKRCELAEPTSKSSINFDKGGVEESSAVKENATIHLSKENEVTDGTNPDVPLTEDTQATKSSSRMPHEAKPKKSPSVKRQYVRRSGLNKSSTPTEVSGDLPGKVMQESAITSCRMSINFDRGANDESSADRENGTVHPCKETGAEIQEINVGLDDDIQTFMNPAVENNYLSFCNNEQTPTVHPCKETAAVMQKVDVGISYDMKTFMKQATENNYMSFCSNEQNSITSPSQTNPLGDKSKEKLTGNKYERRKRLNKSPICQTKMTGELTGSMMPDSKETPMRRFSDFDMGTEDESSACRQVLNVHIGDAVEETPAGLAYNKDTWMKQALHSYMPLPEDAQAPSTCPSKGNHPGAKPKENSDGEKKCVRKKRSKMTSTPTKRTGGLTEPIMSEPTTISCKMSINFDKGGRDESYMCNKS*