AlfalfaGEDB | MsG0880043598.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043598.01

KEGG: K05658
GO: GO:0005524 GO:0016021 GO:0016887 GO:0042626 GO:0055085
PFAM: PF00005 PF00664

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043598.01.T01	XP_003591310.1	96.016	1280	44	2	1	1273	1	1280	0	2501
MsG0880043598.01.T01	XP_003591310.1	42.379	597	328	7	31	620	696	1283	4.68E-133	451

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043598.01.T01	Q9M1Q9	74.252	1270	312	6	8	1273	30	1288	0	1875

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043598.01.T01	G7IBR0	96.016	1280	44	2	1	1273	1	1280	0.0	2501

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004752.01	MsG0880043598.01	0.819662	1.032587e-52	7.995796e-50

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PPI

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Gene1	Gene2	Type
MsG0180004752.01	MsG0880043598.01	PPI
MsG0580025502.01	MsG0880043598.01	PPI
MsG0680030672.01	MsG0880043598.01	PPI
MsG0680030679.01	MsG0880043598.01	PPI
MsG0780036906.01	MsG0880043598.01	PPI
MsG0780040974.01	MsG0880043598.01	PPI
MsG0880043598.01	MsG0180004753.01	PPI
MsG0880043598.01	MsG0580025502.01	PPI
MsG0880043598.01	MsG0680030677.01	PPI
MsG0880043598.01	MsG0680030679.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043598.01.T01	MTR_1g086080	96.016	1280	44	2	1	1273	1	1280	0.0	2501
MsG0880043598.01.T01	MTR_1g086080	42.379	597	328	7	31	620	696	1283	5.67e-137	451
MsG0880043598.01.T01	MTR_1g086150	89.082	1264	132	3	6	1264	4	1266	0.0	2208
MsG0880043598.01.T01	MTR_1g086150	41.077	594	336	5	688	1273	32	619	6.26e-136	448
MsG0880043598.01.T01	MTR_4g124040	72.029	1262	337	9	25	1273	66	1324	0.0	1799
MsG0880043598.01.T01	MTR_4g124040	72.029	1262	337	9	25	1273	11	1269	0.0	1797
MsG0880043598.01.T01	MTR_4g124000	71.040	1250	349	7	32	1273	27	1271	0.0	1792
MsG0880043598.01.T01	MTR_4g123990	70.255	1254	362	5	27	1273	22	1271	0.0	1785
MsG0880043598.01.T01	MTR_4g077930	69.896	1249	363	7	32	1272	25	1268	0.0	1741
MsG0880043598.01.T01	MTR_4g077930	41.459	603	336	6	682	1273	15	611	2.81e-132	438

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043598.01.T01	AT3G62150	74.252	1270	312	6	8	1273	30	1288	0.0	1875
MsG0880043598.01.T01	AT3G62150	41.818	605	344	6	19	620	692	1291	5.50e-143	468
MsG0880043598.01.T01	AT3G62150	74.252	1270	312	6	8	1273	30	1288	0.0	1875
MsG0880043598.01.T01	AT3G62150	41.818	605	344	6	19	620	692	1291	5.50e-143	468
MsG0880043598.01.T01	AT3G62150	74.252	1270	312	6	8	1273	30	1288	0.0	1875
MsG0880043598.01.T01	AT3G62150	41.818	605	344	6	19	620	692	1291	5.50e-143	468
MsG0880043598.01.T01	AT2G47000	74.597	1240	303	7	40	1273	45	1278	0.0	1872
MsG0880043598.01.T01	AT2G47000	41.528	602	343	6	24	620	684	1281	1.74e-142	466
MsG0880043598.01.T01	AT2G47000	74.597	1240	303	7	40	1273	45	1278	0.0	1872
MsG0880043598.01.T01	AT2G47000	41.528	602	343	6	24	620	684	1281	1.74e-142	466

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Find 274 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGGCAATGCAACTG+AGG	0.656238	8:-27479625	MsG0880043598.01.T01:CDS
AAACATTATCGACCAAAACT+TGG	0.492807	8:+27481393	None:intergenic
AAACTTCCAATAAGAAGAAC+GGG	0.455427	8:+27481517	None:intergenic
AAAGTATTAGAGGACATTCA+AGG	0.565026	8:-27483083	MsG0880043598.01.T01:CDS
AAAGTCCACAGTTATTAGTT+TGG	0.413527	8:-27482934	MsG0880043598.01.T01:CDS
AAAGTGAATAATTTGTGAAA+TGG	0.435549	8:+27484782	None:intergenic
AAAGTTCTCTCTTACCGTGA+TGG	0.591709	8:+27481761	None:intergenic
AAATAGGACCACTGTGGTTG+TGG	0.553434	8:-27479196	MsG0880043598.01.T01:CDS
AAATTCATGAAGGGATTCAG+CGG	0.666718	8:-27481019	MsG0880043598.01.T01:CDS
AAATTTGTATACTTGGCAGT+AGG	0.545618	8:-27484469	MsG0880043598.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTATCGACCAAAACT+TGG	+	Chr8:27482340-27482359	None:intergenic	30.0%
AAACTTCCAATAAGAAGAAC+GGG	+	Chr8:27482216-27482235	None:intergenic	30.0%
AAAGTCCACAGTTATTAGTT+TGG	-	Chr8:27480796-27480815	MsG0880043598.01.T01:intron	30.0%
AAATTTGTATACTTGGCAGT+AGG	-	Chr8:27479261-27479280	MsG0880043598.01.T01:CDS	30.0%
AACATTGCATATGGTAAAGA+TGG	-	Chr8:27480959-27480978	MsG0880043598.01.T01:intron	30.0%
AATGCTCATAGATTCATTAG+TGG	-	Chr8:27484157-27484176	MsG0880043598.01.T01:intron	30.0%
ACTAATGAATCTATGAGCAT+TGG	+	Chr8:27484158-27484177	None:intergenic	30.0%
ACTTCAAAGATCTATCAGTA+GGG	-	Chr8:27482029-27482048	MsG0880043598.01.T01:intron	30.0%
ACTTCATTTGTACAATGATC+AGG	-	Chr8:27481853-27481872	MsG0880043598.01.T01:CDS	30.0%
ACTTTCAAACTTTATTGGCA+AGG	+	Chr8:27480461-27480480	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	27478825	27484927	27478825	ID=MsG0880043598.01;Name=MsG0880043598.01
Chr8	mRNA	27478825	27484927	27478825	ID=MsG0880043598.01.T01;Parent=MsG0880043598.01;Name=MsG0880043598.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0.63\|0.58\|1\|1\|1\|12\|228\|1278
Chr8	exon	27478825	27479397	27478825	ID=MsG0880043598.01.T01:exon:8847;Parent=MsG0880043598.01.T01
Chr8	exon	27479563	27479856	27479563	ID=MsG0880043598.01.T01:exon:8846;Parent=MsG0880043598.01.T01
Chr8	exon	27480061	27480324	27480061	ID=MsG0880043598.01.T01:exon:8845;Parent=MsG0880043598.01.T01
Chr8	exon	27480447	27480713	27480447	ID=MsG0880043598.01.T01:exon:8844;Parent=MsG0880043598.01.T01
Chr8	exon	27481009	27481877	27481009	ID=MsG0880043598.01.T01:exon:8843;Parent=MsG0880043598.01.T01
Chr8	exon	27482234	27482507	27482234	ID=MsG0880043598.01.T01:exon:8842;Parent=MsG0880043598.01.T01
Chr8	exon	27482698	27483223	27482698	ID=MsG0880043598.01.T01:exon:8841;Parent=MsG0880043598.01.T01
Chr8	exon	27483323	27483561	27483323	ID=MsG0880043598.01.T01:exon:8840;Parent=MsG0880043598.01.T01
Chr8	exon	27483844	27484065	27483844	ID=MsG0880043598.01.T01:exon:8839;Parent=MsG0880043598.01.T01
Chr8	exon	27484176	27484351	27484176	ID=MsG0880043598.01.T01:exon:8838;Parent=MsG0880043598.01.T01
Chr8	exon	27484446	27484500	27484446	ID=MsG0880043598.01.T01:exon:8837;Parent=MsG0880043598.01.T01
Chr8	exon	27484622	27484927	27484622	ID=MsG0880043598.01.T01:exon:8836;Parent=MsG0880043598.01.T01
Chr8	CDS	27484622	27484927	27484622	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27484446	27484500	27484446	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27484176	27484351	27484176	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27483844	27484065	27483844	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27483323	27483561	27483323	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27482698	27483223	27482698	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27482234	27482507	27482234	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27481009	27481877	27481009	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27480447	27480713	27480447	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27480061	27480324	27480061	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27479563	27479856	27479563	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	CDS	27479053	27479397	27479053	ID=MsG0880043598.01.T01:cds;Parent=MsG0880043598.01.T01
Chr8	three_prime_UTR	27478825	27479052	27478825	ID=MsG0880043598.01.T01:three_prime_utr;Parent=MsG0880043598.01.T01

Gene Sequence

>MsG0880043598.01.T01

ATGGGTAAGGTGAATGAGATAGAGAATAATAATGATGAAGCAACAACGTCAACAGAAACAAGTAGTACAAATGTTGTTACAAACGGCGCAAAGGACAAAACAAAAGAAAAACAAGAGACAGTTCCATTTCACAAATTATTCACTTTTGCAGATTCTACTGACATTTTATTAATGATTGTTGGTACTATCGGTGCTATTGGAAACGGTTTGGGTTTACCTCTCATGACATTATTGGTCGGTCAAATAATTGATAGTTTTGGTAGTAACCAAAATAACACCACCGATGTTGTTGATCAAGTATCCAAGGTATCTTTGAAATTTGTATACTTGGCAGTAGGATCTGGGGTGGTAGCATTTCTTCAGGTGAGTTGTTGGATGGTTACAGGAGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTTACTTTCTTTGATAAAGAAACAAACACAGGAGAAGTTGTAGGGAGAATGTCTGGTGATACTGTTCTTATTCAAGATGCAATGGGTGAGAAGGTTGGGAAGTTTCTGCAGCTAATAGCAACATTTATTGGGGGTTTTGTGATAGCATTTACCAAAGGGTGGCTTCTTACTGTTGTGATGATGTCGACACTTCCGCTTCTTGTTGTGTCAGGTGCTGCCATGACTGTTATGACAGGCAGGATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCATATGTTGTTGAACAGACAATTGGCTCAATAAGAACGGTTGCATCCTTTACTGGGGAAAAGCAAGCAGTGTCTAGTTATAGCAAATTTCTTGTAGATGCTTACAAATCAGGAGTTTTTGAAGGTACTATAGCTGGAGCAGGAATAGGCACATTTATGTTTGTTATGTTCTGTGCTTATGCTTTGGCTGTTTGGTTTGGTGCAAAGATGATCATGGAAAAAGGATATAACGGCGGCACCGTGATTAATGTGCTTACCGCCGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCACCAAGTATGAGTGCTTTTGCTGCGGGTCAGGCGGCAGCTTACAAAATGTTTGAAACAATTAAGAGAAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAGTATTAGAGGACATTCAAGGTGAAATAGAGTTGAAGGAAGTTTATTTCAGTTATCCCACAAGACCCGAGGAGCTGATATTCAATGGATTCTCTCTTCACATATCAAGTGGAACAACCGTGGCATTGGTTGGACAAAGTGGAAGTGGAAAGTCCACAGTTATTAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGAATTAACATGAAAGAACTTCAGCTTAGGTGGATCAGAGGGAAAATTGGTCTTGTCAGCCAGGAGCCAGTGTTATTTGCATCCAGCATTAAGGATAACATTGCATATGGTAAAGATGGAGCAACAATTGAAGAAATAAGATCTGCATCTGAACTTGCAAACGCCGCCAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGTGACCATGGAACTCAACTGTCTGGTGGACAGAAGCAGCGCATTGCGATTGCAAGAGCAATCCTTAAGAATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTAGTGCAAGAGGCTCTGGATAGAATCATGGTCAACAGAACCACAGTTGTCGTTGCACATCGCTTAAGCACAGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCTGAATTACTGAAGGATCCTGAAGGAGCTTATTCACAACTCATACGGTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACAGACCATCACGGTAAGAGAGAACTTTCTGCAGAGTCCTTTAGACAGTCGAGTCAAAGGAAGTCACTTCAAAGATCTATCAGTAGGGGATCATCTATAGGGAATAGTAGTCGCCATTCATTTTCAGTTTCGTTCCGTTTACCAACGGGAGTTAATGTCGCTGATCCTGAACTTGAAAAAGTGGCAACCAAAGAAAAAGAACAAGAAGTTCCGCTGAGACGCCTCGCTTCCCTTAACAAGCCAGAGATTCCCGTTCTTCTTATTGGAAGTTTAGCTGCCATAGCTAACGGTCTCATACTTCCAATATTCGGCGTTTTGATCTCCAGTGTCATCAAAACATTTTATGAACCGTTTGATGAGATGAAGAAGGACTCCAAGTTTTGGTCGATAATGTTTATGCTCCTTGGTCTTGCATCTTTGGTGGTGACTCCGGCGCGAGGTTACTTTTTCTCTGTGGCTGGATGCAAGTTAATCCAAAGGATCAGGCTATTATGTTTTGAGAAGGTGGTGAATATGGAGGTCGGTTGGTTTGATGAGCCTGAAAACTCGAGCGGCGCAGTTGGTGCAAGGCTCTCGGCAGAAGCTGCTTCCGTACGTGCCCTTGTTGGCGATGCACTTGGACTGTTGGTTCAAAATTTGGCATCTGCATTGGCTGGATTGATTATTGCTTTCATTGCGAGCTGGCAGCTGGCGCTGATTATTCTTGTGTTGATTCCTCTGATTGGATTAAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGCGGAGACGCAAAGATGATGTACGAGGAGGCTAGTCAAGTTGCGAATGATGCAGTTGGAAGCATAAGAACTGTGGCTTCTTTCTGTGCTGAAGATAAGGTTATGGAACTATATAGGAAGAAATGTGAAGGTCCCATGAAAACAGGAATAAGGCTAGGGATAATCAGTGGATCAGGATTTGGTTTTTCATTTCTCTTATTGTTTAGTGTCTATGCGACCAGTTTCTACGCAGGAGCTAGACTTGTTAAAGCTGGGAATACAACTTTTTCAGATGTTTTTCGGGTTTTCTTCGCGTTAACTATGGCAGCTGTTGGTATTTCTCGGTCAAGTTCCTTTGCTCCTGACTCTAGTAAAGCAAAGTCAGCTACTGCTTCTATATTTGGAATGATTGATAAGAAGTCAAAGATTGATCCAAGTGAAGAGTCTGGTACCACTCTAGATAGTGTTAAAGGCGAAATTGAGCTTCGCCATATAAGCTTTAAGTATCCATCTCGGCCTGATATTCAGATTTTCCGAGACCTCAATTTGACTATCCATTCTGGCAAGACAGTAGCACTTGTTGGTGAAAGTGGAAGTGGGAAGTCAACGGTGATTGCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACATTTGATGGAATAGAAATTCGTCAGTTAAAGCTCAAGTGGTTAAGGCAACAAATGGGTCTTGTAAGCCAAGAACCAGTCTTATTCAATGACACTATTCGTGCCAATATTGCCTATGGAAAAGGTGGCAATGCAACTGAGGCAGAAATCGTAGCTGCGGCTGAATTGGCCAATGCTCATAGATTCATTAGTGGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGGGGCACTCAACTATCAGGTGGGCAGAAGCAAAGGGTGGCTATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAAGCAACAAGTGCATTAGATGCAGAGTCAGAAAGAGTTGTTCAAGATGCATTAGATAAAGTCATGGTAAATAGGACCACTGTGGTTGTGGCACATCGTTTATCTACAATTAAAAATGCAGATGTTATTGCTGTTGTCAAGAATGGAGTTATAGTGGAAAAAGGAAGGCATGAAACACTTTTTAACATTAAGGATGGATTTTATGCTTCCTTCCTTGGTCCAACTTCATACTAG

Protein sequence

>MsG0880043598.01.T01

MGKVNEIENNNDEATTSTETSSTNVVTNGAKDKTKEKQETVPFHKLFTFADSTDILLMIVGTIGAIGNGLGLPLMTLLVGQIIDSFGSNQNNTTDVVDQVSKVSLKFVYLAVGSGVVAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPLLVVSGAAMTVMTGRMASKGQTAYAKAAYVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVFEGTIAGAGIGTFMFVMFCAYALAVWFGAKMIMEKGYNGGTVINVLTAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIKRKPEIDAYDPNGKVLEDIQGEIELKEVYFSYPTRPEELIFNGFSLHISSGTTVALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKELQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEETTDHHGKRELSAESFRQSSQRKSLQRSISRGSSIGNSSRHSFSVSFRLPTGVNVADPELEKVATKEKEQEVPLRRLASLNKPEIPVLLIGSLAAIANGLILPIFGVLISSVIKTFYEPFDEMKKDSKFWSIMFMLLGLASLVVTPARGYFFSVAGCKLIQRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSAEAASVRALVGDALGLLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSGDAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRLGIISGSGFGFSFLLLFSVYATSFYAGARLVKAGNTTFSDVFRVFFALTMAAVGISRSSSFAPDSSKAKSATASIFGMIDKKSKIDPSEESGTTLDSVKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITFDGIEIRQLKLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIVAAAELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLFNIKDGFYASFLGPTSY*