AlfalfaGEDB | MsG0880043626.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043626.01

KEGG: -
GO: GO:0005515 GO:0043531
PFAM: PF00400 PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043626.01.T01	XP_003627811.1	70.152	1052	67	10	390	1194	1	1052	0	1347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043626.01.T01	Q9LRR5	30.314	861	390	17	398	1051	42	899	4.46E-99	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043626.01.T01	Q1RU52	70.152	1052	67	10	390	1194	1	1052	0.0	1347

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280009676.01	MsG0880043626.01	0.807068	6.055846e-50	3.340602e-47
MsG0580029953.01	MsG0880043626.01	0.804273	2.338283e-49	1.200486e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043626.01.T01	MTR_8g038570	70.152	1052	67	10	390	1194	1	1052	0.0	1347
MsG0880043626.01.T01	MTR_8g038590	48.571	1050	292	16	390	1192	1	1049	0.0	850
MsG0880043626.01.T01	MTR_2g038760	39.645	1014	392	22	397	1194	49	1058	0.0	612
MsG0880043626.01.T01	MTR_2g038900	39.349	1014	395	23	397	1194	38	1047	0.0	603
MsG0880043626.01.T01	MTR_2g038930	40.295	881	340	20	496	1194	8	884	8.73e-177	550
MsG0880043626.01.T01	MTR_3g035480	33.105	1024	428	29	412	1189	61	1073	7.23e-151	487
MsG0880043626.01.T01	MTR_0002s0110	32.715	1024	432	28	412	1189	61	1073	3.81e-150	484
MsG0880043626.01.T01	MTR_3g035940	32.910	1024	430	28	412	1189	61	1073	5.63e-149	481
MsG0880043626.01.T01	MTR_3g032800	34.158	1010	414	29	403	1170	50	1050	4.18e-145	470
MsG0880043626.01.T01	MTR_3g020890	33.333	1068	439	21	390	1195	1	1057	8.42e-144	467

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043626.01.T01	AT3G14460	30.314	861	390	17	398	1051	42	899	4.54e-100	348
MsG0880043626.01.T01	AT3G14470	33.014	627	284	11	392	891	39	656	3.21e-86	303
MsG0880043626.01.T01	AT3G14470	30.067	449	194	11	794	1189	606	987	2.53e-39	159
MsG0880043626.01.T01	AT3G14470	33.014	627	284	11	392	891	39	656	3.21e-86	303
MsG0880043626.01.T01	AT3G14470	30.067	449	194	11	794	1189	606	987	2.53e-39	159
MsG0880043626.01.T01	AT5G13480	61.932	176	42	3	43	215	123	276	2.16e-56	207
MsG0880043626.01.T01	AT5G13480	61.932	176	42	3	43	215	146	299	2.99e-56	208
MsG0880043626.01.T01	AT5G13480	61.932	176	42	3	43	215	123	276	3.23e-56	207
MsG0880043626.01.T01	AT5G13480	61.932	176	42	3	43	215	135	288	3.48e-56	207
MsG0880043626.01.T01	AT3G50950	25.551	454	238	13	409	769	47	493	2.88e-30	130

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Find 290 sgRNAs with CRISPR-Local

Find 1558 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAACCCCAAATTG+TGG	0.569044	8:-27963733	None:intergenic
AAAAGATTTGGTGTTTGAAA+AGG	0.402235	8:+27985758	MsG0880043626.01.T01:CDS
AAAATCAAACCATCGTAATG+AGG	0.557145	8:-27964101	None:intergenic
AAACATCTCTTCAAATGAGA+AGG	0.540923	8:-27985714	None:intergenic
AAACCATCGTAATGAGGAGG+AGG	0.589884	8:-27964095	None:intergenic
AAACCCTAACCCCAAATTGT+GGG	0.521155	8:-27963732	None:intergenic
AAACTTTGGGATGCTAAAAG+CGG	0.629222	8:+27969120	MsG0880043626.01.T01:CDS
AAAGTTTCCAAGGATGGAAA+TGG	0.416927	8:-27986962	None:intergenic
AAATTGTAGCAACAATGTAC+TGG	0.521212	8:-27987364	None:intergenic
AACCCTAACCCCAAATTGTG+GGG	0.595857	8:-27963731	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAACCTGCAATGCA+TGG	-	Chr8:27976146-27976165	None:intergenic	30.0%
AAAAAACTCCATACCTTGTT+AGG	-	Chr8:27984744-27984763	None:intergenic	30.0%
AAAATATTGAAATGTAGGGG+GGG	-	Chr8:27980518-27980537	None:intergenic	30.0%
AAAATCAAACCATCGTAATG+AGG	-	Chr8:27964104-27964123	None:intergenic	30.0%
AAACAACTCAAATCCCTATA+AGG	-	Chr8:27969426-27969445	None:intergenic	30.0%
AAACAACTCCTATCTAACAA+GGG	+	Chr8:27967324-27967343	MsG0880043626.01.T01:intron	30.0%
AAACATCTCTTCAAATGAGA+AGG	-	Chr8:27985717-27985736	None:intergenic	30.0%
AAACGAAAACAAAAACTCAC+TGG	-	Chr8:27972206-27972225	None:intergenic	30.0%
AAACTCACGCACATAAATAT+AGG	-	Chr8:27980920-27980939	None:intergenic	30.0%
AAATTGTAGCAACAATGTAC+TGG	-	Chr8:27987367-27987386	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	27963703	27987597	27963703	ID=MsG0880043626.01;Name=MsG0880043626.01
Chr8	mRNA	27963703	27987597	27963703	ID=MsG0880043626.01.T01;Parent=MsG0880043626.01;Name=MsG0880043626.01.T01;_AED=0.34;_eAED=0.38;_QI=284\|0.11\|0.22\|0.94\|1\|1\|18\|0\|1201
Chr8	exon	27963703	27964113	27963703	ID=MsG0880043626.01.T01:exon:5546;Parent=MsG0880043626.01.T01
Chr8	exon	27967916	27967998	27967916	ID=MsG0880043626.01.T01:exon:5547;Parent=MsG0880043626.01.T01
Chr8	exon	27968100	27968172	27968100	ID=MsG0880043626.01.T01:exon:5548;Parent=MsG0880043626.01.T01
Chr8	exon	27968248	27968380	27968248	ID=MsG0880043626.01.T01:exon:5549;Parent=MsG0880043626.01.T01
Chr8	exon	27968589	27968688	27968589	ID=MsG0880043626.01.T01:exon:5550;Parent=MsG0880043626.01.T01
Chr8	exon	27968949	27969012	27968949	ID=MsG0880043626.01.T01:exon:5551;Parent=MsG0880043626.01.T01
Chr8	exon	27969100	27969160	27969100	ID=MsG0880043626.01.T01:exon:5552;Parent=MsG0880043626.01.T01
Chr8	exon	27972453	27972563	27972453	ID=MsG0880043626.01.T01:exon:5553;Parent=MsG0880043626.01.T01
Chr8	exon	27973630	27973718	27973630	ID=MsG0880043626.01.T01:exon:5554;Parent=MsG0880043626.01.T01
Chr8	exon	27976446	27976660	27976446	ID=MsG0880043626.01.T01:exon:5555;Parent=MsG0880043626.01.T01
Chr8	exon	27979080	27979171	27979080	ID=MsG0880043626.01.T01:exon:5556;Parent=MsG0880043626.01.T01
Chr8	exon	27984408	27984488	27984408	ID=MsG0880043626.01.T01:exon:5557;Parent=MsG0880043626.01.T01
Chr8	exon	27984602	27984859	27984602	ID=MsG0880043626.01.T01:exon:5558;Parent=MsG0880043626.01.T01
Chr8	exon	27984976	27985419	27984976	ID=MsG0880043626.01.T01:exon:5559;Parent=MsG0880043626.01.T01
Chr8	exon	27985575	27985961	27985575	ID=MsG0880043626.01.T01:exon:5560;Parent=MsG0880043626.01.T01
Chr8	exon	27986044	27986244	27986044	ID=MsG0880043626.01.T01:exon:5561;Parent=MsG0880043626.01.T01
Chr8	exon	27986435	27986516	27986435	ID=MsG0880043626.01.T01:exon:5562;Parent=MsG0880043626.01.T01
Chr8	exon	27986593	27987597	27986593	ID=MsG0880043626.01.T01:exon:5563;Parent=MsG0880043626.01.T01
Chr8	five_prime_UTR	27963703	27963986	27963703	ID=MsG0880043626.01.T01:five_prime_utr;Parent=MsG0880043626.01.T01
Chr8	CDS	27963987	27964113	27963987	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27967916	27967998	27967916	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27968100	27968172	27968100	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27968248	27968380	27968248	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27968589	27968688	27968589	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27968949	27969012	27968949	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27969100	27969160	27969100	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27972453	27972563	27972453	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27973630	27973718	27973630	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27976446	27976660	27976446	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27979080	27979171	27979080	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27984408	27984488	27984408	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27984602	27984859	27984602	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27984976	27985419	27984976	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27985575	27985961	27985575	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27986044	27986244	27986044	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27986435	27986516	27986435	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01
Chr8	CDS	27986593	27987597	27986593	ID=MsG0880043626.01.T01:cds;Parent=MsG0880043626.01.T01

Gene Sequence

>MsG0880043626.01.T01

ATGCCTCAACAACCTCCGCCTATGATGCGCCAACCGTCCGCTTCTTCGACTAATCTCGGATCGGAGTTTCATCATCCTGGACCTGGTGGTCCCCCTGGTCCACCTGGTCCTCCTCCTCATTACGATGGCCGGCGTCTTATTACTGGCTCACAGACCGGGAAATTTACTCTTTGGAATGGACAGTCTTTTAATTTCGAAATGATACTTCAGGCTCATGATTCAGCAATCAGATCCATGATCTGGAGTCACAATGACAACTGGATGGTCTCTGGTGATGATGGGGATTTTATGTTTGAAGGCACATATCTAATTAGAAGCATTTTAATTGCGGGTCAATTTTCTAGGTATTGGCAGAACAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGACTTAAGATATGAGAATGGGTTTTCTGTCTCTAATCTGGACATTCCAGATGGGAGGATGGATTTCCTGTTTCTTATCTGTTCAGCTTATTATTATTACTTGTCTCTTCCAGGCCACGGTTGGGATGTGAAGAGTGTTGACTGGCATCCAACAAAATCTCTATTAGTATCAGGTGGGAAAGACAATCTTGTGAAACTTTGGGATGCTAAAAGCGGGAAAGAGCTCTCCTCCTTGCATGAGACTCCACAAATGAAATTTCCAACGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATATCTTCTGTGCAGGTGAACAAAACTTTGCTGCTCATGGTAGCAGTGATCATACAACAAAGTTTTGGTCTAGAAACAGGCCGGGAGACAGTGCCCGTGATAGTAGATATAACAATGGCATTCAAGGGGATGCAAGGTATGGGTCCTCCAATGCCACAAGGTCATTATGGGGGCATGAATCAAATGCATTCAGGATCCTTGTCTACAAGTGGAGGACCACCCATGGGAGGTTTCCCAAACAATATGCAAGGCCACCAAATAACAATTATCCTCAAGGTGCTCCATTTAACAGACCACAAGGTGGACAAATGCCCATGATGCAAGGGTATAATCCTTACCAGGGCAATAGGCAGGCAATATTTCATAGTATTTGGGAATTACCATTAAGAATGAGAGCAATATTGGATGAATTCAAAGATGTTGGGAATGACTGGCTCCTCCCCTTTTGTGCTATGGCTGTTGAATTTATTGGCAGTGCTCTTCTTTCAGCTTCCCTTGAGGTTGCATTTGACAGAAACAAGCAGATCAGAAATCAACATGTGAAAGCATGGCTCGATGCTGTCAAAGATGTTGTGTATGAAGCAGAAGATTTATTAGATGAAATTGACATTCAAGCCTTTCAATGCAAACTCGAAGCTGAATCTCAATCCAGTCCTAACAAGGTATGGAGTTTTTTCAATGTTTCTACAAATTCATTTGACAAAGAAATTGAATCAAAGATGCAAGAAGTACTTGATAACCTAGAATATCTTGCTAGCAAAAAGGATATTAGAGATGTGGAGAAAGACATTATATTGAACTGGTTGATATCTCATACCGACAATGAAAAACAATTTTCTATAGTTTCTATTGTTGGTATGGGTGGGTTGGGTAAGACCTTGCTTGCTCAACACTTATATAATGACTCAAATATGGTGGATGAATTTGATGTCAAAGCTTGGGTTTGTATTTCCGACGAATTTGATGTTTTCAAGGTAACAAGAGCTATTCTTGAGGGTATCACCAGATCAACTGATGATAGTAGAGACTTAAATATGGTTCAAGAAAGGTTGAAGGAAAAATTGTCAGGGAGGAGATTTCTTCTTGTTTTGGATGATGTTTGGAGTGAAAAATGTGACGAATGGGAATGTTTGCAGACTCCTTTTAATTATGGATCCAGTGGAAGCAAAATTATCGTCACTACGCGTAGTATGAAAGTTGCTTCTTCGACCATGCGCTTGAAAACAGTTGGAAGTCTCTTGTACACAAAATCATCTTTGGTGGAATGGAAAACTACACTGGAAAGCGAGATATGGGACTTACCTGAAGAGGTTAGCAATATTATCCCCGCTTTAAGACTGAGCTATCATCACCTTCCTTCTCATTTGAAGAGATGTTTTGCTTATTGCTCTTTATTTCCAAAAGATTTGGTGTTTGAAAAGGAGCATTTAATTTTATTATGGATGGCTGAAAATTTTCTACAATGTCCTCAACATAGTAAGAGTATGGAAGAAATTGGCGAAGAGTACTTTGATGATCTGTTATCGAGGTCTTTTTTTCAACAATCAAGTCAAGACCAAACATGTTTTGTCATGCATGATCTTCTCAATGATTGGCAAAATATACATAGATATGAATCTTCCAAGAGGTTTGAGGCCTTATGTAAAGCTGAAAGATTGCGTACATTTCTACCATTTAGCAGAAACCGCAAAGTGCCATCTTTTCTCAATGAATTCTGGATGTCTGGCCCTTTGTTGCATGACTTGCTTCCAAGTTTAAGTTCTTACGCACTTTATCTCTGTCTCGTTATTGGACTATGGTTGAGTGGAACTAAAGTGAGAAATATGCCGATGCATTTTGGAAAATTGAAGAATCTTCAAGTGTTGAATTCATTCTGTGTAAAAAAGAATACTGCCAATCCCTTTGATGCATTGGCAACAAACTTGAAAAATAAAATACACATTGTGAAGCTAGAGTTAGAATGGAATGCAAACAATGAAAACTCGGTGCAAGAAAGGGAAGTGCTTGAGAAGCTACAACCTTCAGAACACTTGAAGGAACTATCAATTAGGAGCTATGGTGGAACAAGATTTCCATATTGGTTTGAAGATGATTCACTATCTAATTTAGTGTCCTTGAAGTTGAGTAACTGTGAAAAATGTCTCTTGTTGCCTCCTCTTGGAATTTTACCATCTCTCAAGAAACTAAGCATTATAGGGCTATCTAGTGTAGTGTTTATTGGCACCGAGTTTTATGGAAGTAGCTCTTCAACTGTTCCATTTCCATCCTTGGAAACTTTACAATTTGAGGATATGTGTGAATGGGAAGAATGGGAATGCAAAACTGTGACAAATGCTTTTCCACATCTTCAAAAGCTTTCTTTAAAAAATTGTCCAAATCTCAGAGAGTATTTACCAGAGGAACTTCCTGGTTTAATTATGCTAGAAGTTTCTCATTGTGAACAACTTGTGGCTTCTGTTCCTAGGACTCCATTCATTCATGAATTACATCTGAATGATTGCGGAAAGCTTCAATTTGATTACCATCCAGATACTTTGAAAATTCTCAAGATTGCTGGATACTGCATGGAAACATCACTGCTTGAGAGAATTGAGGCTATCATACCCAATATTTCTCTTGAAAGAATGAAAATTAATTCTTGCCCTATGATGAACATTCCAGTACATTGTTGCTACAATTTCCTTGTAGGATTGTACATCTGGAGTAGTTGTGACTCTCTAACTACATTTCCTCTTGATTTGTTCCCAAAATTAAAGGAGCTCCAATTTAGAGACTGTAATAATCTTGAGATGGTTTCACAAGAGAAAACTCACAATCTCAAACTTTTTCAAATATCCAATTGTCCTAAATTGTGTCATTTCCAAAAGGAGGACTCAATGCACCTGAGCTAG

Protein sequence

>MsG0880043626.01.T01

MPQQPPPMMRQPSASSTNLGSEFHHPGPGGPPGPPGPPPHYDGRRLITGSQTGKFTLWNGQSFNFEMILQAHDSAIRSMIWSHNDNWMVSGDDGDFMFEGTYLIRSILIAGQFSRYWQNNMNNVKANKSAHKESVRDLRYENGFSVSNLDIPDGRMDFLFLICSAYYYYLSLPGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELSSLHETPQMKFPTLMIIMCGILHGILLDIFCAGEQNFAAHGSSDHTTKFWSRNRPGDSARDSRYNNGIQGDARYGSSNATRSLWGHESNAFRILVYKWRTTHGRFPKQYARPPNNNYPQGAPFNRPQGGQMPMMQGYNPYQGNRQAIFHSIWELPLRMRAILDEFKDVGNDWLLPFCAMAVEFIGSALLSASLEVAFDRNKQIRNQHVKAWLDAVKDVVYEAEDLLDEIDIQAFQCKLEAESQSSPNKVWSFFNVSTNSFDKEIESKMQEVLDNLEYLASKKDIRDVEKDIILNWLISHTDNEKQFSIVSIVGMGGLGKTLLAQHLYNDSNMVDEFDVKAWVCISDEFDVFKVTRAILEGITRSTDDSRDLNMVQERLKEKLSGRRFLLVLDDVWSEKCDEWECLQTPFNYGSSGSKIIVTTRSMKVASSTMRLKTVGSLLYTKSSLVEWKTTLESEIWDLPEEVSNIIPALRLSYHHLPSHLKRCFAYCSLFPKDLVFEKEHLILLWMAENFLQCPQHSKSMEEIGEEYFDDLLSRSFFQQSSQDQTCFVMHDLLNDWQNIHRYESSKRFEALCKAERLRTFLPFSRNRKVPSFLNEFWMSGPLLHDLLPSLSSYALYLCLVIGLWLSGTKVRNMPMHFGKLKNLQVLNSFCVKKNTANPFDALATNLKNKIHIVKLELEWNANNENSVQEREVLEKLQPSEHLKELSIRSYGGTRFPYWFEDDSLSNLVSLKLSNCEKCLLLPPLGILPSLKKLSIIGLSSVVFIGTEFYGSSSSTVPFPSLETLQFEDMCEWEEWECKTVTNAFPHLQKLSLKNCPNLREYLPEELPGLIMLEVSHCEQLVASVPRTPFIHELHLNDCGKLQFDYHPDTLKILKIAGYCMETSLLERIEAIIPNISLERMKINSCPMMNIPVHCCYNFLVGLYIWSSCDSLTTFPLDLFPKLKELQFRDCNNLEMVSQEKTHNLKLFQISNCPKLCHFQKEDSMHLS*