AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029953.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029953.01.T01 MTR_5g095530 83.905 379 46 2 1 379 1 364 0.0 570
MsG0580029953.01.T01 MTR_3g006690 34.973 183 95 6 196 358 282 460 3.34e-20 92.4
MsG0580029953.01.T01 MTR_2g049420 32.973 185 104 6 195 363 149 329 1.26e-19 89.4
MsG0580029953.01.T01 MTR_2g049420 32.973 185 104 6 195 363 286 466 2.62e-19 89.7
MsG0580029953.01.T01 MTR_2g049420 32.973 185 104 6 195 363 277 457 2.79e-19 89.4
MsG0580029953.01.T01 MTR_5g045920 30.688 189 99 5 208 379 126 299 2.39e-17 82.0
MsG0580029953.01.T01 MTR_3g085400 31.293 147 82 4 199 326 311 457 8.00e-15 76.3
MsG0580029953.01.T01 MTR_2g017810 30.573 157 90 2 187 327 91 244 2.07e-14 73.6
MsG0580029953.01.T01 MTR_3g085395 30.882 136 78 3 207 326 200 335 1.81e-13 71.6
MsG0580029953.01.T01 MTR_3g070810 28.671 143 96 4 230 370 129 267 1.50e-12 67.8
MsG0580029953.01.T01 MTR_5g082660 28.244 131 90 3 230 358 155 283 8.32e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029953.01.T01 AT1G55900 48.031 381 169 5 1 375 1 358 6.51e-116 342
MsG0580029953.01.T01 AT1G55900 48.021 379 168 5 1 373 1 356 1.57e-115 341
MsG0580029953.01.T01 AT5G11860 30.387 181 104 6 197 358 99 276 7.87e-18 83.6
MsG0580029953.01.T01 AT5G11860 30.387 181 104 6 197 358 99 276 7.87e-18 83.6
MsG0580029953.01.T01 AT5G11860 30.387 181 104 6 197 358 99 276 7.87e-18 83.6
MsG0580029953.01.T01 AT5G11860 30.387 181 104 6 197 358 99 276 7.87e-18 83.6
MsG0580029953.01.T01 AT5G11860 30.387 181 104 6 197 358 99 276 7.87e-18 83.6
MsG0580029953.01.T01 AT5G45700 31.638 177 98 5 208 365 99 271 3.64e-15 75.5
MsG0580029953.01.T01 AT1G29780 31.169 154 88 4 208 344 51 203 8.95e-15 73.2
MsG0580029953.01.T01 AT5G46410 31.737 167 95 5 208 358 285 448 9.38e-15 75.9
MsG0580029953.01.T01 AT5G46410 31.737 167 95 5 208 358 282 445 9.38e-15 75.9
MsG0580029953.01.T01 AT5G46410 31.737 167 95 5 208 358 282 445 9.38e-15 75.9
MsG0580029953.01.T01 AT3G55960 30.075 133 85 4 230 358 155 283 7.41e-14 72.0
MsG0580029953.01.T01 AT1G29770 29.032 155 91 4 208 344 104 257 4.23e-12 66.6

Find 126 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGCACCCATGGCTTAAT+AGG 0.239907 5:+104409551 None:intergenic
AGAATCGAGATCGGAGAATT+TGG 0.254120 5:+104414203 None:intergenic
AAACATTGATTCACTACATT+TGG 0.275640 5:-104410452 MsG0580029953.01.T01:CDS
GGATCCAGCCTTTCTATAAC+AGG 0.280220 5:+104410008 None:intergenic
ACCCGGAGTTGATGCCTTCT+TGG 0.287511 5:-104410188 MsG0580029953.01.T01:CDS
TAAAGCAGTAGAGCTTTATT+TGG 0.300211 5:-104410704 MsG0580029953.01.T01:CDS
TGCTCCTGAGGAAGCAAATC+TGG 0.325320 5:+104410507 None:intergenic
TGAGGAAATTCCAGCGGTTA+GGG 0.343277 5:+104413966 None:intergenic
GGGGAAGCGGTGGAAGAAAA+AGG 0.345345 5:+104413986 None:intergenic
CCTTCCAGATTTGCTTCCTC+AGG 0.348453 5:-104410511 MsG0580029953.01.T01:CDS
AAGAGGTTCAGGTAGGGTTT+TGG 0.354118 5:+104414271 None:intergenic
ACCGGCTACGGCGGTGGTTC+CGG 0.354192 5:+104413919 None:intergenic
AGCTCAGTTCTTTGAAATAG+TGG 0.368246 5:-104410158 MsG0580029953.01.T01:CDS
TTGGAGAGACATTGTTGTTA+TGG 0.371901 5:+104414222 None:intergenic
AAATGAAATGAAAGAGGTTC+AGG 0.372153 5:+104414260 None:intergenic
GAGAAACATGGAGGAGGTTG+AGG 0.375735 5:+104414127 None:intergenic
GAGACCTGCTACTAAGTATC+AGG 0.375953 5:-104409958 MsG0580029953.01.T01:CDS
GGAGGAGGAGTGGCGGAAGA+AGG 0.377139 5:+104414016 None:intergenic
GTAGCGGAAGAGGGAGGAGG+TGG 0.379260 5:+104414046 None:intergenic
GGAGGAGTGGCGGAAGAAGG+TGG 0.394550 5:+104414019 None:intergenic
GAAGAGGGAGGAGGTGGAGA+AGG 0.401258 5:+104414052 None:intergenic
AGGTGGAGGAGTAGCGGAAG+AGG 0.403611 5:+104414036 None:intergenic
TACGGCGGTGGTTCCGGTTA+AGG 0.406728 5:+104413925 None:intergenic
TTGAGGAAATTCCAGCGGTT+AGG 0.408146 5:+104413965 None:intergenic
AGGATCTTTCAAAACTAAAC+AGG 0.413308 5:-104409643 MsG0580029953.01.T01:CDS
CGAACCGTAAGAGGCGTAAC+CGG 0.415603 5:+104413901 None:intergenic
GCTGCCATCGGTGCCTTAAC+CGG 0.417543 5:-104413938 MsG0580029953.01.T01:CDS
GAAGGAGTGGCAGAAGGAGG+AGG 0.419573 5:+104414070 None:intergenic
GGTTTATTGAAGAACACGTT+AGG 0.429285 5:-104410672 MsG0580029953.01.T01:CDS
GTATACAGATGAACAGAATA+TGG 0.431740 5:-104410134 MsG0580029953.01.T01:intron
TCTGCACCCATGGCTTAATA+GGG 0.437365 5:+104409552 None:intergenic
CACCGATGGCAGCGTATTTG+AGG 0.444864 5:+104413948 None:intergenic
AGGAGGAGGTGGAGGAGGAG+TGG 0.447975 5:+104414006 None:intergenic
CAGGCGTTTCAAATTGCATA+AGG 0.448133 5:-104409292 MsG0580029953.01.T01:CDS
GGAGTAGCGGAAGAGGGAGG+AGG 0.449116 5:+104414043 None:intergenic
AGGAGGTGGAGGAGGAGTGG+CGG 0.449841 5:+104414009 None:intergenic
TGGATCCTAAGCACTGCATT+AGG 0.453716 5:-104409992 MsG0580029953.01.T01:CDS
ATTCCAGCGGTTAGGGGAAG+CGG 0.455791 5:+104413973 None:intergenic
GGTGGAGGAGTAGCGGAAGA+GGG 0.456550 5:+104414037 None:intergenic
TTATATCAGCCGGGCTAGTA+CGG 0.463174 5:+104409364 None:intergenic
GGGAGGAGGTGGAGAAGGAG+TGG 0.463546 5:+104414057 None:intergenic
AGTAGCAGCAGGAGCGGCGG+TGG 0.464184 5:+104414102 None:intergenic
GGTGGAGAAGGAGTGGCAGA+AGG 0.464320 5:+104414064 None:intergenic
CCATCCTGATACTTAGTAGC+AGG 0.468851 5:+104409954 None:intergenic
GGAGTGGCAGAAGGAGGAGG+AGG 0.468973 5:+104414073 None:intergenic
AGGAGGTTGAGGAGTGACTT+TGG 0.474619 5:+104414138 None:intergenic
TTATGCTTGCAGAAATTTCA+AGG 0.477158 5:-104412174 MsG0580029953.01.T01:intron
GGAGAAGGAGTGGCAGAAGG+AGG 0.479566 5:+104414067 None:intergenic
GGCGTAACCGGCTACGGCGG+TGG 0.481279 5:+104413913 None:intergenic
AGCACTGGTCTTATATCAGC+CGG 0.483378 5:+104409354 None:intergenic
GGAAGGAGCTTGTCTGTGTA+TGG 0.485204 5:+104410528 None:intergenic
CACTCGGAATATCACATCCT+TGG 0.486830 5:+104409322 None:intergenic
TTAATAGGGACACAGTTCTC+AGG 0.487617 5:+104409566 None:intergenic
CTAAGCACTGCATTAGGTAC+AGG 0.494989 5:-104409986 MsG0580029953.01.T01:CDS
TTGTAGACCCTGTTATAGAA+AGG 0.499591 5:-104410016 MsG0580029953.01.T01:CDS
GCAAAAGTTATGTACTTAAG+TGG 0.505360 5:-104409614 MsG0580029953.01.T01:CDS
GCTTGGCTTGGTGGAGACGC+CGG 0.505360 5:+104414293 None:intergenic
TAAAGCTCTACTGCTTTAGC+AGG 0.507689 5:+104410709 None:intergenic
AGACCCTGTTATAGAAAGGC+TGG 0.510757 5:-104410012 MsG0580029953.01.T01:CDS
TTCCAAGAAGGCATCAACTC+CGG 0.511667 5:+104410186 None:intergenic
CCTTGGTAAGACTGCAGCAC+TGG 0.513048 5:+104409339 None:intergenic
GGAGGAGTAGCGGAAGAGGG+AGG 0.513402 5:+104414040 None:intergenic
TATATCAGCCGGGCTAGTAC+GGG 0.517337 5:+104409365 None:intergenic
TCTTTATCAGTCTGCACCCA+TGG 0.518730 5:+104409542 None:intergenic
GTAATGTGCAGCTTATAGTT+CGG 0.523902 5:-104413749 MsG0580029953.01.T01:intron
TTATAGTTCGGACGAAATTG+AGG 0.524378 5:-104413737 MsG0580029953.01.T01:CDS
TCCAAGAAGGCATCAACTCC+GGG 0.525377 5:+104410187 None:intergenic
GTAGCCGGTTACGCCTCTTA+CGG 0.529718 5:-104413905 MsG0580029953.01.T01:intron
TGAATGAAATGAAATGAAAG+AGG 0.529892 5:+104414254 None:intergenic
GGACACAGTTCTCAGGTTGT+AGG 0.531104 5:+104409573 None:intergenic
TAAAGATGATACAGCTCTTG+TGG 0.533851 5:-104409525 MsG0580029953.01.T01:CDS
GGCACTAAAATATTACATGC+AGG 0.535135 5:+104410730 None:intergenic
CTGTACCTAATGCAGTGCTT+AGG 0.536001 5:+104409987 None:intergenic
TCGAGAGAAGTAGCTCCATC+AGG 0.536228 5:+104413673 None:intergenic
GGAGGTGAATGAGTAGCAGC+AGG 0.536311 5:+104414091 None:intergenic
AGCTTTATTTGGATGCAAGA+AGG 0.537430 5:-104410693 MsG0580029953.01.T01:CDS
ATATTCCGAGTGAATTCCTC+AGG 0.538760 5:-104409311 MsG0580029953.01.T01:CDS
GGAGTGGCGGAAGAAGGTGG+AGG 0.539928 5:+104414022 None:intergenic
GTTTATTGAAGAACACGTTA+GGG 0.542013 5:-104410671 MsG0580029953.01.T01:intron
GTATACTCAACTGCAGTGAC+AGG 0.543024 5:-104412147 MsG0580029953.01.T01:CDS
CTTGCAGAAATTTCAAGGGA+TGG 0.544133 5:-104412169 MsG0580029953.01.T01:intron
GAAATGAAAGAGGTTCAGGT+AGG 0.550193 5:+104414264 None:intergenic
ACCGGAACCACCGCCGTAGC+CGG 0.551106 5:-104413920 MsG0580029953.01.T01:CDS
CCACCGCTTCCCCTAACCGC+TGG 0.553504 5:-104413976 MsG0580029953.01.T01:CDS
TATGCTTGCAGAAATTTCAA+GGG 0.560032 5:-104412173 MsG0580029953.01.T01:intron
GTGACTTTGGCGAAGCGGAA+TGG 0.560847 5:+104414151 None:intergenic
GTAGGCAACTTTCTAAAGCA+TGG 0.562469 5:+104409591 None:intergenic
CCTGCTACTAAGTATCAGGA+TGG 0.566998 5:-104409954 MsG0580029953.01.T01:CDS
TACTCAACTGCAGTGACAGG+TGG 0.568673 5:-104412144 MsG0580029953.01.T01:CDS
CTGTGTCCCTATTAAGCCAT+GGG 0.571381 5:-104409558 MsG0580029953.01.T01:CDS
TTCCTCAAATACGCTGCCAT+CGG 0.575985 5:-104413950 MsG0580029953.01.T01:CDS
TGAATGAGTAGCAGCAGGAG+CGG 0.576769 5:+104414096 None:intergenic
ATCAGGTGGAGTGTACTTAG+CGG 0.577775 5:+104413690 None:intergenic
GCTAAGTACACTCCACCTGA+TGG 0.578725 5:-104413688 MsG0580029953.01.T01:CDS
AGTTATTGCCCGTACTAGCC+CGG 0.582795 5:-104409373 MsG0580029953.01.T01:CDS
AAATGAAAGAGGTTCAGGTA+GGG 0.586182 5:+104414265 None:intergenic
ATTGATTCACTACATTTGGA+CGG 0.591226 5:-104410448 MsG0580029953.01.T01:intron
GAGGAATGCACTTACACTCA+AGG 0.594742 5:+104409489 None:intergenic
GTAAGAGGCGTAACCGGCTA+CGG 0.595627 5:+104413907 None:intergenic
ATGTGAAGCGAGATACAAGC+TGG 0.600307 5:-104410225 MsG0580029953.01.T01:intron
GGAAGAAGGTGGAGGAGTAG+CGG 0.600482 5:+104414030 None:intergenic
ACTGTGTCCCTATTAAGCCA+TGG 0.604101 5:-104409559 MsG0580029953.01.T01:CDS
CGACGGAGAAGAATCGAGAT+CGG 0.613375 5:+104414194 None:intergenic
GGTTCCGGTTAAGGCACCGA+TGG 0.615001 5:+104413934 None:intergenic
CCTGAGGAAGCAAATCTGGA+AGG 0.622399 5:+104410511 None:intergenic
ATGCACTTACACTCAAGGAA+TGG 0.623566 5:+104409494 None:intergenic
CGATGACGATGATGCTGCGA+CGG 0.623580 5:+104414177 None:intergenic
GTGGATGAGAAACATGGAGG+AGG 0.623914 5:+104414121 None:intergenic
CTGAGCTAGATGTTCCAAGA+AGG 0.625883 5:+104410174 None:intergenic
AGAGAAGTAGCTCCATCAGG+TGG 0.626174 5:+104413676 None:intergenic
GCACTGGTCTTATATCAGCC+GGG 0.635398 5:+104409355 None:intergenic
GAGGAGTGACTTTGGCGAAG+CGG 0.636601 5:+104414146 None:intergenic
ATGAGTAGCAGCAGGAGCGG+CGG 0.640320 5:+104414099 None:intergenic
GCGGCGGTGGATGAGAAACA+TGG 0.643040 5:+104414115 None:intergenic
CCAGCGGTTAGGGGAAGCGG+TGG 0.643133 5:+104413976 None:intergenic
ACTCAACTGCAGTGACAGGT+GGG 0.644449 5:-104412143 MsG0580029953.01.T01:intron
CTGCTACTAAGTATCAGGAT+GGG 0.644510 5:-104409953 MsG0580029953.01.T01:CDS
GTGAACACATGTTGCTCCTG+AGG 0.649088 5:+104410495 None:intergenic
GAGGAAATTCCAGCGGTTAG+GGG 0.651443 5:+104413967 None:intergenic
AAACGCCTGAGGAATTCACT+CGG 0.654658 5:+104409306 None:intergenic
GATCCAGCCTTTCTATAACA+GGG 0.661553 5:+104410009 None:intergenic
CGTATTTGAGGAAATTCCAG+CGG 0.669655 5:+104413960 None:intergenic
CCAGTGCTGCAGTCTTACCA+AGG 0.672246 5:-104409339 MsG0580029953.01.T01:CDS
TATGCAATTTGAAACGCCTG+AGG 0.679211 5:+104409295 None:intergenic
AGAGGCGTAACCGGCTACGG+CGG 0.690683 5:+104413910 None:intergenic
GCGGTGGATGAGAAACATGG+AGG 0.755481 5:+104414118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAATTATATATTTAA+AGG + Chr5:104411519-104411538 None:intergenic 0.0%
!! TTATTATAATAATATTGACA+CGG - Chr5:104412740-104412759 MsG0580029953.01.T01:intron 10.0%
!!! TTTTATGATATGATAATTAA+CGG - Chr5:104412123-104412142 MsG0580029953.01.T01:intron 10.0%
!! AAATATCAAATATCTTTGAA+TGG - Chr5:104413197-104413216 MsG0580029953.01.T01:intron 15.0%
!! AATATCAAATATCTTTGAAT+GGG - Chr5:104413198-104413217 MsG0580029953.01.T01:intron 15.0%
!! AGTAAAAATCAACATTATAT+AGG + Chr5:104413328-104413347 None:intergenic 15.0%
!! AGTCAATTTAATATGTTAAT+AGG - Chr5:104410849-104410868 MsG0580029953.01.T01:intron 15.0%
!! ATTAATGCTATGAAAATTTA+TGG - Chr5:104413231-104413250 MsG0580029953.01.T01:intron 15.0%
!! TAACATATTAAATTGACTAA+AGG + Chr5:104410847-104410866 None:intergenic 15.0%
!! TATTATAATAATATTGACAC+GGG - Chr5:104412741-104412760 MsG0580029953.01.T01:intron 15.0%
!! TCATAGAAATATCTATTATA+CGG - Chr5:104412360-104412379 MsG0580029953.01.T01:intron 15.0%
!!! ATTTTTACTGTTTTGTTTAT+TGG - Chr5:104411251-104411270 MsG0580029953.01.T01:intron 15.0%
!!! TGTTGATTTTTACTTTTATT+TGG - Chr5:104413334-104413353 MsG0580029953.01.T01:intron 15.0%
!! AATCATATCAATATGTAGTA+GGG - Chr5:104412050-104412069 MsG0580029953.01.T01:intron 20.0%
!! AGTCAGTTTAATATGTTAAT+AGG - Chr5:104411354-104411373 MsG0580029953.01.T01:intron 20.0%
!! ATTATAATAATATTGACACG+GGG - Chr5:104412742-104412761 MsG0580029953.01.T01:intron 20.0%
!! TAACATATTAAACTGACTAA+AGG + Chr5:104411352-104411371 None:intergenic 20.0%
!! TAATCATATCAATATGTAGT+AGG - Chr5:104412049-104412068 MsG0580029953.01.T01:intron 20.0%
!! TATCTTATATCAGTATTGTT+CGG - Chr5:104411491-104411510 MsG0580029953.01.T01:intron 20.0%
!! TATTTATTTGTTTGATGAAG+TGG - Chr5:104410548-104410567 MsG0580029953.01.T01:intron 20.0%
!!! ATATTTTTATATCCCCAAAA+CGG + Chr5:104413183-104413202 None:intergenic 20.0%
!!! TTTTGTTTCTTGTTTTTAGT+CGG + Chr5:104411096-104411115 None:intergenic 20.0%
! AAATCACAAAAGAGATTTAG+TGG + Chr5:104411973-104411992 None:intergenic 25.0%
! AGCATTAAAAGTTTAACACA+AGG + Chr5:104413003-104413022 None:intergenic 25.0%
! ATATCAACCTACTAATGTTA+AGG + Chr5:104411380-104411399 None:intergenic 25.0%
! ATCATATCAATATGTAGTAG+GGG - Chr5:104412051-104412070 MsG0580029953.01.T01:intron 25.0%
! ATTAAAAGTTTAACACAAGG+TGG + Chr5:104413000-104413019 None:intergenic 25.0%
! CAATACTGATATAAGATAAG+TGG + Chr5:104411489-104411508 None:intergenic 25.0%
! CAGTATCAAAATAAAATGAC+AGG + Chr5:104413855-104413874 None:intergenic 25.0%
! CCAATAAATTGACAAAATGT+GGG + Chr5:104410635-104410654 None:intergenic 25.0%
! GACTAAAAACAAGAAACAAA+AGG - Chr5:104411095-104411114 MsG0580029953.01.T01:intron 25.0%
! TACACATGTACAAACTAATT+TGG + Chr5:104412803-104412822 None:intergenic 25.0%
! TCATTTAAATACATCTCAAG+AGG + Chr5:104414116-104414135 None:intergenic 25.0%
! TCCAATAAATTGACAAAATG+TGG + Chr5:104410636-104410655 None:intergenic 25.0%
! TCTTGTAGAAGAATCAAATT+TGG + Chr5:104412777-104412796 None:intergenic 25.0%
! TGAATGAAATGAAATGAAAG+AGG + Chr5:104409332-104409351 None:intergenic 25.0%
! TTGGTTTAGTTGTATTGTTA+AGG - Chr5:104412439-104412458 MsG0580029953.01.T01:intron 25.0%
! TTTAGTTGTATTGTTAAGGA+GGG - Chr5:104412443-104412462 MsG0580029953.01.T01:intron 25.0%
!! ACATTTTGTCAATTTATTGG+AGG - Chr5:104410635-104410654 MsG0580029953.01.T01:intron 25.0%
!! ATTTTCTTACATTACTACCA+GGG - Chr5:104410151-104410170 MsG0580029953.01.T01:CDS 25.0%
!! GTGTTAAACTTTTAATGCTT+TGG - Chr5:104413004-104413023 MsG0580029953.01.T01:intron 25.0%
!! TGCTTTTACTTCTCTAATTT+TGG - Chr5:104412943-104412962 MsG0580029953.01.T01:intron 25.0%
!!! AAACATTGATTCACTACATT+TGG - Chr5:104413131-104413150 MsG0580029953.01.T01:intron 25.0%
!!! CGAATTTTTGTTTGATGAAA+TGG - Chr5:104410050-104410069 MsG0580029953.01.T01:intron 25.0%
!!! TGCCTTTTAAAATCATTAGA+CGG - Chr5:104412612-104412631 MsG0580029953.01.T01:intron 25.0%
AAAATGACAGGAAAAAGCAA+AGG + Chr5:104413843-104413862 None:intergenic 30.0%
AAACAAAAGGCCTAAAAACA+GGG - Chr5:104411108-104411127 MsG0580029953.01.T01:intron 30.0%
AAATGAAATGAAAGAGGTTC+AGG + Chr5:104409326-104409345 None:intergenic 30.0%
AACGAAATCTCCTAAAAGTA+TGG - Chr5:104412679-104412698 MsG0580029953.01.T01:intron 30.0%
AAGTACAAACATGAATCGAA+TGG - Chr5:104411938-104411957 MsG0580029953.01.T01:intron 30.0%
AATTATGACAAAACTCAGCA+TGG - Chr5:104410198-104410217 MsG0580029953.01.T01:CDS 30.0%
ACAAATCCAAAAATCAAACG+TGG - Chr5:104412523-104412542 MsG0580029953.01.T01:intron 30.0%
AGGATCTTTCAAAACTAAAC+AGG - Chr5:104413940-104413959 MsG0580029953.01.T01:CDS 30.0%
AGTTTCCTCAAAATCAAAAC+CGG + Chr5:104412592-104412611 None:intergenic 30.0%
ATGTCTTTAGTATGTTCTTC+AGG + Chr5:104413807-104413826 None:intergenic 30.0%
ATTCACTGTAATCACATATG+TGG - Chr5:104410423-104410442 MsG0580029953.01.T01:intron 30.0%
CAATAACTGCATATGGATAA+TGG + Chr5:104414198-104414217 None:intergenic 30.0%
CCAATTTAATTCTAATGCAC+CGG - Chr5:104412570-104412589 MsG0580029953.01.T01:intron 30.0%
GACTAAAAACAGGAAACAAA+AGG - Chr5:104411138-104411157 MsG0580029953.01.T01:intron 30.0%
GCAAAAGTTATGTACTTAAG+TGG - Chr5:104413969-104413988 MsG0580029953.01.T01:CDS 30.0%
GTATACAGATGAACAGAATA+TGG - Chr5:104413449-104413468 MsG0580029953.01.T01:intron 30.0%
GTGGAAAAACATGAAAAGAA+AGG + Chr5:104412981-104413000 None:intergenic 30.0%
GTTTAGTTGTATTGTTAAGG+AGG - Chr5:104412442-104412461 MsG0580029953.01.T01:intron 30.0%
GTTTATTGAAGAACACGTTA+GGG - Chr5:104412912-104412931 MsG0580029953.01.T01:intron 30.0%
TAATAGGCCTTAACATTAGT+AGG - Chr5:104411370-104411389 MsG0580029953.01.T01:intron 30.0%
TATGCTTGCAGAAATTTCAA+GGG - Chr5:104411410-104411429 MsG0580029953.01.T01:intron 30.0%
TGTAAAAGTGATCCTTCTTT+CGG + Chr5:104411850-104411869 None:intergenic 30.0%
TTAAGTTCATGTTGCATAAG+AGG + Chr5:104411220-104411239 None:intergenic 30.0%
TTATGCTTGCAGAAATTTCA+AGG - Chr5:104411409-104411428 MsG0580029953.01.T01:intron 30.0%
TTCACTGTAATCACATATGT+GGG - Chr5:104410424-104410443 MsG0580029953.01.T01:intron 30.0%
TTGGATGTAACACTTTGATA+TGG - Chr5:104410668-104410687 MsG0580029953.01.T01:intron 30.0%
! ATCATTAGACGGCATATTTT+AGG - Chr5:104412623-104412642 MsG0580029953.01.T01:intron 30.0%
! ATGTGATATGCCATACTTTT+AGG + Chr5:104412692-104412711 None:intergenic 30.0%
! ATTGATTCACTACATTTGGA+CGG - Chr5:104413135-104413154 MsG0580029953.01.T01:intron 30.0%
! CATTTTCTTACATTACTACC+AGG - Chr5:104410150-104410169 MsG0580029953.01.T01:CDS 30.0%
! CCCACATTTTGTCAATTTAT+TGG - Chr5:104410632-104410651 MsG0580029953.01.T01:intron 30.0%
! CTTAAGTACATAACTTTTGC+AGG + Chr5:104413969-104413988 None:intergenic 30.0%
! GTGATTTTGTGTAGTTATCT+TGG - Chr5:104411986-104412005 MsG0580029953.01.T01:intron 30.0%
! GTTTATTGGAATTCCTTTTG+TGG - Chr5:104411265-104411284 MsG0580029953.01.T01:intron 30.0%
! TGCCGTCTAATGATTTTAAA+AGG + Chr5:104412617-104412636 None:intergenic 30.0%
! TTGTTTCTCTGTATTCTGAA+TGG - Chr5:104413482-104413501 MsG0580029953.01.T01:intron 30.0%
! TTTCTTGAATCGTATTGATC+TGG - Chr5:104409760-104409779 MsG0580029953.01.T01:intron 30.0%
!! ATTATGCCACGTTTGATTTT+TGG + Chr5:104412532-104412551 None:intergenic 30.0%
!! ATTTTGATACTGCACAAATG+TGG - Chr5:104413863-104413882 MsG0580029953.01.T01:intron 30.0%
!! TAAAGCAGTAGAGCTTTATT+TGG - Chr5:104412879-104412898 MsG0580029953.01.T01:intron 30.0%
AAACCACATCACCAACATAA+GGG - Chr5:104411065-104411084 MsG0580029953.01.T01:intron 35.0%
AAATGAAAGAGGTTCAGGTA+GGG + Chr5:104409321-104409340 None:intergenic 35.0%
AACTAGCAAAGAAGTCAAGT+GGG - Chr5:104412414-104412433 MsG0580029953.01.T01:intron 35.0%
ACAAACATGAACATCGAACA+CGG - Chr5:104410360-104410379 MsG0580029953.01.T01:intron 35.0%
AGAAAAATACGAACCGTAAG+AGG + Chr5:104409694-104409713 None:intergenic 35.0%
ATCAAACGTGGCATAATTCT+TGG - Chr5:104412535-104412554 MsG0580029953.01.T01:intron 35.0%
ATGTCAACCTACTAATGTTG+AGG + Chr5:104410875-104410894 None:intergenic 35.0%
ATTACCAGTGTTGTCAATTG+TGG + Chr5:104412305-104412324 None:intergenic 35.0%
CAGTGAAAACAGAAATGAAG+AGG + Chr5:104409721-104409740 None:intergenic 35.0%
CATACCCTTGACCTAAATAA+GGG - Chr5:104411626-104411645 MsG0580029953.01.T01:intron 35.0%
CCGGTGCATTAGAATTAAAT+TGG + Chr5:104412573-104412592 None:intergenic 35.0%
GAAACAAAAGGCCTAAAAAC+AGG - Chr5:104411107-104411126 MsG0580029953.01.T01:intron 35.0%
GATGTAACACTTTGATATGG+TGG - Chr5:104410671-104410690 MsG0580029953.01.T01:intron 35.0%
GGCACTAAAATATTACATGC+AGG + Chr5:104412856-104412875 None:intergenic 35.0%
GGTTTATTGAAGAACACGTT+AGG - Chr5:104412911-104412930 MsG0580029953.01.T01:intron 35.0%
GTAAAAGTGATCCTTCTTTC+GGG + Chr5:104411849-104411868 None:intergenic 35.0%
GTAATGTGCAGCTTATAGTT+CGG - Chr5:104409834-104409853 MsG0580029953.01.T01:intron 35.0%
TAAAAGTGATCCTTCTTTCG+GGG + Chr5:104411848-104411867 None:intergenic 35.0%
TAAAGATGATACAGCTCTTG+TGG - Chr5:104414058-104414077 MsG0580029953.01.T01:CDS 35.0%
TAACTAGCAAAGAAGTCAAG+TGG - Chr5:104412413-104412432 MsG0580029953.01.T01:intron 35.0%
TAATAGGCCTCAACATTAGT+AGG - Chr5:104410865-104410884 MsG0580029953.01.T01:intron 35.0%
TCAAACGTGGCATAATTCTT+GGG - Chr5:104412536-104412555 MsG0580029953.01.T01:intron 35.0%
TCTGCATTGTTTGAATGTGA+TGG - Chr5:104410809-104410828 MsG0580029953.01.T01:intron 35.0%
TGGAACTAAATGGCATATGA+TGG + Chr5:104411608-104411627 None:intergenic 35.0%
TGTTCATGTTTGTGCTTCAT+AGG + Chr5:104410353-104410372 None:intergenic 35.0%
TGTTGCGTATACATGAACAT+TGG - Chr5:104411581-104411600 MsG0580029953.01.T01:intron 35.0%
TTATAATCTATCACACTCCC+TGG + Chr5:104410171-104410190 None:intergenic 35.0%
TTATAGTTCGGACGAAATTG+AGG - Chr5:104409846-104409865 MsG0580029953.01.T01:intron 35.0%
TTGTAGACCCTGTTATAGAA+AGG - Chr5:104413567-104413586 MsG0580029953.01.T01:intron 35.0%
TTGTCAATTTATTGGAGGTG+TGG - Chr5:104410640-104410659 MsG0580029953.01.T01:intron 35.0%
TTGTGTAGTTATCTTGGCTA+TGG - Chr5:104411992-104412011 MsG0580029953.01.T01:intron 35.0%
! ACAGCACTATTGCTTAGTTT+TGG - Chr5:104411288-104411307 MsG0580029953.01.T01:intron 35.0%
! ACTTCCCTTATTTAGGTCAA+GGG + Chr5:104411633-104411652 None:intergenic 35.0%
! ATATCTTCGAACAGAAGTGT+CGG + Chr5:104410096-104410115 None:intergenic 35.0%
! TGTACAGAGTACAGTTCTTT+TGG + Chr5:104412339-104412358 None:intergenic 35.0%
! TTGGAGAGACATTGTTGTTA+TGG + Chr5:104409364-104409383 None:intergenic 35.0%
!! AGCTCAGTTCTTTGAAATAG+TGG - Chr5:104413425-104413444 MsG0580029953.01.T01:intron 35.0%
!! AGCTTTATTTGGATGCAAGA+AGG - Chr5:104412890-104412909 MsG0580029953.01.T01:intron 35.0%
!! GTATGTTGTTCCCTGTTTTT+AGG + Chr5:104411164-104411183 None:intergenic 35.0%
AGAATCGAGATCGGAGAATT+TGG + Chr5:104409383-104409402 None:intergenic 40.0%
AGTTCCTGCTTTGCATGAAA+GGG - Chr5:104411813-104411832 MsG0580029953.01.T01:intron 40.0%
ATATTCCGAGTGAATTCCTC+AGG - Chr5:104414272-104414291 MsG0580029953.01.T01:five_prime_UTR 40.0%
ATGCACTTACACTCAAGGAA+TGG + Chr5:104414092-104414111 None:intergenic 40.0%
CAAACCACATCACCAACATA+AGG - Chr5:104411064-104411083 MsG0580029953.01.T01:intron 40.0%
CAGGCGTTTCAAATTGCATA+AGG - Chr5:104414291-104414310 MsG0580029953.01.T01:five_prime_UTR 40.0%
CCATACCCTTGACCTAAATA+AGG - Chr5:104411625-104411644 MsG0580029953.01.T01:intron 40.0%
CCTAAATAAGGGAAGTCCTT+AGG - Chr5:104411637-104411656 MsG0580029953.01.T01:intron 40.0%
CGAGTTGCAAAATTTGTGTG+TGG - Chr5:104410596-104410615 MsG0580029953.01.T01:intron 40.0%
CGATTCATGTTTGTACTTGC+AGG + Chr5:104411936-104411955 None:intergenic 40.0%
CGTATTTGAGGAAATTCCAG+CGG + Chr5:104409626-104409645 None:intergenic 40.0%
CTAGCGTGAATTGTTGTGTT+TGG - Chr5:104410326-104410345 MsG0580029953.01.T01:intron 40.0%
CTATCCACAATTGACAACAC+TGG - Chr5:104412298-104412317 MsG0580029953.01.T01:intron 40.0%
CTGCTACTAAGTATCAGGAT+GGG - Chr5:104413630-104413649 MsG0580029953.01.T01:intron 40.0%
CTTGCAGAAATTTCAAGGGA+TGG - Chr5:104411414-104411433 MsG0580029953.01.T01:intron 40.0%
GAAATGAAAGAGGTTCAGGT+AGG + Chr5:104409322-104409341 None:intergenic 40.0%
GATCCAGCCTTTCTATAACA+GGG + Chr5:104413577-104413596 None:intergenic 40.0%
GCAAGCAGCAATTTATCCAT+GGG + Chr5:104412078-104412097 None:intergenic 40.0%
GGGAACAACTGACTAAAAAC+AGG - Chr5:104411128-104411147 MsG0580029953.01.T01:intron 40.0%
GTGGGAAAGTTAAAGTGAGA+GGG - Chr5:104411712-104411731 MsG0580029953.01.T01:intron 40.0%
GTGTTGTCAATTGTGGATAG+CGG + Chr5:104412298-104412317 None:intergenic 40.0%
TAAAGCTCTACTGCTTTAGC+AGG + Chr5:104412877-104412896 None:intergenic 40.0%
TCCTCTGTAGCATTTGATCA+GGG - Chr5:104412385-104412404 MsG0580029953.01.T01:intron 40.0%
TGCAAGCAGCAATTTATCCA+TGG + Chr5:104412079-104412098 None:intergenic 40.0%
TGGCGTACAGAATAAAGCTA+GGG + Chr5:104411469-104411488 None:intergenic 40.0%
TTAATAGGGACACAGTTCTC+AGG + Chr5:104414020-104414039 None:intergenic 40.0%
! CCTAAGGACTTCCCTTATTT+AGG + Chr5:104411640-104411659 None:intergenic 40.0%
! CCTTATTTAGGTCAAGGGTA+TGG + Chr5:104411628-104411647 None:intergenic 40.0%
! GACTTCCCTTATTTAGGTCA+AGG + Chr5:104411634-104411653 None:intergenic 40.0%
! GCACTGACACTTCTAATTGA+AGG + Chr5:104410496-104410515 None:intergenic 40.0%
! GTCAAGGGTATGGAACTAAA+TGG + Chr5:104411618-104411637 None:intergenic 40.0%
! TATGCAATTTGAAACGCCTG+AGG + Chr5:104414291-104414310 None:intergenic 40.0%
! TATTGGAGGTGTGGTATCTT+TGG - Chr5:104410649-104410668 MsG0580029953.01.T01:intron 40.0%
! TGTATGGTTCTGTATAACCC+TGG + Chr5:104413042-104413061 None:intergenic 40.0%
! TTTTTCCCTTTGCCTGTCAT+TGG - Chr5:104413916-104413935 MsG0580029953.01.T01:CDS 40.0%
!! CTGCATATGGATAATGGAGA+AGG + Chr5:104414192-104414211 None:intergenic 40.0%
!! GTAGGCAACTTTCTAAAGCA+TGG + Chr5:104413995-104414014 None:intergenic 40.0%
!! GTCAGTTGTTCCCTGTTTTT+AGG + Chr5:104411121-104411140 None:intergenic 40.0%
!! TATGTTGGTGATGTGGTTTG+TGG + Chr5:104411064-104411083 None:intergenic 40.0%
!! TGGCAGACTTTTAAAAGACC+CGG - Chr5:104413378-104413397 MsG0580029953.01.T01:intron 40.0%
!! TGTGGATAGCGGAAATTTGT+GGG + Chr5:104412287-104412306 None:intergenic 40.0%
!! TTGTGGATAGCGGAAATTTG+TGG + Chr5:104412288-104412307 None:intergenic 40.0%
!!! ATGCACCGGTTTTGATTTTG+AGG - Chr5:104412584-104412603 MsG0580029953.01.T01:intron 40.0%
!!! CTTAGTTTTGGAGCTTTGCA+TGG - Chr5:104411300-104411319 MsG0580029953.01.T01:intron 40.0%
!!! TTTTGGAGCTTTGCATGGTT+AGG - Chr5:104411305-104411324 MsG0580029953.01.T01:intron 40.0%
AAACGCCTGAGGAATTCACT+CGG + Chr5:104414280-104414299 None:intergenic 45.0%
AACCAAGCATAAGACGAGCA+AGG - Chr5:104411005-104411024 MsG0580029953.01.T01:intron 45.0%
AATATGTAGTAGGGGTCCCA+TGG - Chr5:104412059-104412078 MsG0580029953.01.T01:intron 45.0%
ACTGTGTCCCTATTAAGCCA+TGG - Chr5:104414024-104414043 MsG0580029953.01.T01:CDS 45.0%
AGACCCTGTTATAGAAAGGC+TGG - Chr5:104413571-104413590 MsG0580029953.01.T01:intron 45.0%
AGGAGTTGAGAAGGGAGTTA+GGG - Chr5:104411754-104411773 MsG0580029953.01.T01:intron 45.0%
AGTCGGTTGTTCCCTTATGT+TGG + Chr5:104411079-104411098 None:intergenic 45.0%
ATCAGGTGGAGTGTACTTAG+CGG + Chr5:104409896-104409915 None:intergenic 45.0%
ATCCTGAGAGGAGTTGAGAA+GGG - Chr5:104411746-104411765 MsG0580029953.01.T01:intron 45.0%
ATGTGAAGCGAGATACAAGC+TGG - Chr5:104413358-104413377 MsG0580029953.01.T01:intron 45.0%
CAAAGAAGTCAAGTGGGCAT+TGG - Chr5:104412420-104412439 MsG0580029953.01.T01:intron 45.0%
CACTCGGAATATCACATCCT+TGG + Chr5:104414264-104414283 None:intergenic 45.0%
CAGTTCCTGCTTTGCATGAA+AGG - Chr5:104411812-104411831 MsG0580029953.01.T01:intron 45.0%
CCATCCTGATACTTAGTAGC+AGG + Chr5:104413632-104413651 None:intergenic 45.0%
CCTGCTACTAAGTATCAGGA+TGG - Chr5:104413629-104413648 MsG0580029953.01.T01:intron 45.0%
CTCCTCTGTAGCATTTGATC+AGG - Chr5:104412384-104412403 MsG0580029953.01.T01:intron 45.0%
CTGAGCTAGATGTTCCAAGA+AGG + Chr5:104413412-104413431 None:intergenic 45.0%
CTGATCAAATGCTACAGAGG+AGG + Chr5:104412386-104412405 None:intergenic 45.0%
CTGTACCTAATGCAGTGCTT+AGG + Chr5:104413599-104413618 None:intergenic 45.0%
CTGTGTCCCTATTAAGCCAT+GGG - Chr5:104414025-104414044 MsG0580029953.01.T01:CDS 45.0%
CTTTCCCACCACTATCCATT+CGG + Chr5:104411701-104411720 None:intergenic 45.0%
GAGACCTGCTACTAAGTATC+AGG - Chr5:104413625-104413644 MsG0580029953.01.T01:intron 45.0%
GAGGAATGCACTTACACTCA+AGG + Chr5:104414097-104414116 None:intergenic 45.0%
GCAATAGTGCTGTCCACAAA+AGG + Chr5:104411281-104411300 None:intergenic 45.0%
GGATCCAGCCTTTCTATAAC+AGG + Chr5:104413578-104413597 None:intergenic 45.0%
GGCGTACAGAATAAAGCTAG+GGG + Chr5:104411468-104411487 None:intergenic 45.0%
GGTGGGAAAGTTAAAGTGAG+AGG - Chr5:104411711-104411730 MsG0580029953.01.T01:intron 45.0%
GTACGGGCAATAACTGCATA+TGG + Chr5:104414205-104414224 None:intergenic 45.0%
GTATACTCAACTGCAGTGAC+AGG - Chr5:104411436-104411455 MsG0580029953.01.T01:intron 45.0%
GTGGCGTACAGAATAAAGCT+AGG + Chr5:104411470-104411489 None:intergenic 45.0%
GTTCCTGCTTTGCATGAAAG+GGG - Chr5:104411814-104411833 MsG0580029953.01.T01:intron 45.0%
GTTGTATTGTTAAGGAGGGC+TGG - Chr5:104412447-104412466 MsG0580029953.01.T01:intron 45.0%
TATAACCCTGGAAGGAAGCA+TGG + Chr5:104413030-104413049 None:intergenic 45.0%
TATCCTGAGAGGAGTTGAGA+AGG - Chr5:104411745-104411764 MsG0580029953.01.T01:intron 45.0%
TATTGGACAGTGACACGTGT+TGG - Chr5:104410458-104410477 MsG0580029953.01.T01:CDS 45.0%
TCCTCTCAGGATAACTGCTT+GGG + Chr5:104411738-104411757 None:intergenic 45.0%
TCTGCACCCATGGCTTAATA+GGG + Chr5:104414034-104414053 None:intergenic 45.0%
TCTTTATCAGTCTGCACCCA+TGG + Chr5:104414044-104414063 None:intergenic 45.0%
TGAAAGATCCTGCCAATGAC+AGG + Chr5:104413931-104413950 None:intergenic 45.0%
TGAGGAAATTCCAGCGGTTA+GGG + Chr5:104409620-104409639 None:intergenic 45.0%
TGCTTTCTCCAAGTTGCCTA+AGG + Chr5:104411656-104411675 None:intergenic 45.0%
TTCCTCAAATACGCTGCCAT+CGG - Chr5:104409633-104409652 MsG0580029953.01.T01:CDS 45.0%
TTGAGGAAATTCCAGCGGTT+AGG + Chr5:104409621-104409640 None:intergenic 45.0%
! AACCTCACATGCACCGTTTT+GGG - Chr5:104413167-104413186 MsG0580029953.01.T01:intron 45.0%
! AAGAGGTTCAGGTAGGGTTT+TGG + Chr5:104409315-104409334 None:intergenic 45.0%
! AGTCAAGGGCGGTATGTTTT+GGG + Chr5:104411877-104411896 None:intergenic 45.0%
! CACATATGTGGGTGTCATGT+CGG - Chr5:104410435-104410454 MsG0580029953.01.T01:intron 45.0%
! CTAAGCACTGCATTAGGTAC+AGG - Chr5:104413597-104413616 MsG0580029953.01.T01:intron 45.0%
! TGGATCCTAAGCACTGCATT+AGG - Chr5:104413591-104413610 MsG0580029953.01.T01:intron 45.0%
! TGGTTCTGTATAACCCTGGA+AGG + Chr5:104413038-104413057 None:intergenic 45.0%
!! AGCACTGGTCTTATATCAGC+CGG + Chr5:104414232-104414251 None:intergenic 45.0%
!! CTTTGCATGAAAGGGGTACT+TGG - Chr5:104411821-104411840 MsG0580029953.01.T01:intron 45.0%
!! GTTCCCTTATGTTGGTGATG+TGG + Chr5:104411071-104411090 None:intergenic 45.0%
!! TAGAAGTGTCAGTGCTACAG+AGG - Chr5:104410501-104410520 MsG0580029953.01.T01:CDS 45.0%
!! TTATATCAGCCGGGCTAGTA+CGG + Chr5:104414222-104414241 None:intergenic 45.0%
!! TTCCAAGAAGGCATCAACTC+CGG + Chr5:104413400-104413419 None:intergenic 45.0%
!!! TAAATATATAATTAATTTTG+AGG - Chr5:104411520-104411539 MsG0580029953.01.T01:intron 5.0%
AACACTGCCAAGGGTAGGAA+TGG - Chr5:104411902-104411921 MsG0580029953.01.T01:intron 50.0%
ACTCAACTGCAGTGACAGGT+GGG - Chr5:104411440-104411459 MsG0580029953.01.T01:intron 50.0%
AGAGAAGTAGCTCCATCAGG+TGG + Chr5:104409910-104409929 None:intergenic 50.0%
AGGAGGTTGAGGAGTGACTT+TGG + Chr5:104409448-104409467 None:intergenic 50.0%
AGGGAAAAGAACCTCCCACT+AGG - Chr5:104411773-104411792 MsG0580029953.01.T01:intron 50.0%
AGGGAAGTCCTTAGGCAACT+TGG - Chr5:104411645-104411664 MsG0580029953.01.T01:intron 50.0%
AGTACGACCATTCCTACCCT+TGG + Chr5:104411912-104411931 None:intergenic 50.0%
AGTTATTGCCCGTACTAGCC+CGG - Chr5:104414210-104414229 MsG0580029953.01.T01:CDS 50.0%
ATCCTGCCAATGACAGGCAA+AGG + Chr5:104413925-104413944 None:intergenic 50.0%
CAAAACATACCGCCCTTGAC+TGG - Chr5:104411876-104411895 MsG0580029953.01.T01:intron 50.0%
CACTAGGTGGTTTGAGGAAG+GGG - Chr5:104411789-104411808 MsG0580029953.01.T01:intron 50.0%
CAGTGACACGTGTTGGACAT+CGG - Chr5:104410465-104410484 MsG0580029953.01.T01:CDS 50.0%
CATGTGAGTGTCTCTTCCCT+TGG - Chr5:104411548-104411567 MsG0580029953.01.T01:intron 50.0%
CCACTAGGTGGTTTGAGGAA+GGG - Chr5:104411788-104411807 MsG0580029953.01.T01:intron 50.0%
CCTGAGGAAGCAAATCTGGA+AGG + Chr5:104413075-104413094 None:intergenic 50.0%
CCTTCCTCAAACCACCTAGT+GGG + Chr5:104411790-104411809 None:intergenic 50.0%
CGACGGAGAAGAATCGAGAT+CGG + Chr5:104409392-104409411 None:intergenic 50.0%
CTCCTCTCAGGATAACTGCT+TGG + Chr5:104411739-104411758 None:intergenic 50.0%
GAAAAGAACCTCCCACTAGG+TGG - Chr5:104411776-104411795 MsG0580029953.01.T01:intron 50.0%
GAAGAAAAAGGAGGAGGTGG+AGG + Chr5:104409588-104409607 None:intergenic 50.0%
GAAGCGGTGGAAGAAAAAGG+AGG + Chr5:104409597-104409616 None:intergenic 50.0%
GACTGGAACAACACTGCCAA+GGG - Chr5:104411893-104411912 MsG0580029953.01.T01:intron 50.0%
GAGAAACATGGAGGAGGTTG+AGG + Chr5:104409459-104409478 None:intergenic 50.0%
GAGGAAATTCCAGCGGTTAG+GGG + Chr5:104409619-104409638 None:intergenic 50.0%
GAGGAGTTGAGAAGGGAGTT+AGG - Chr5:104411753-104411772 MsG0580029953.01.T01:intron 50.0%
GCAACATTCCCGAAGTCCAA+GGG + Chr5:104411567-104411586 None:intergenic 50.0%
GCCCTGATCAAATGCTACAG+AGG + Chr5:104412389-104412408 None:intergenic 50.0%
GCTAAGTACACTCCACCTGA+TGG - Chr5:104409895-104409914 MsG0580029953.01.T01:intron 50.0%
GCTGCTTGCATATGCGCATT+AGG - Chr5:104412089-104412108 MsG0580029953.01.T01:intron 50.0%
GGAAGGAGCTTGTCTGTGTA+TGG + Chr5:104413058-104413077 None:intergenic 50.0%
GTACCCCTTTCATGCAAAGC+AGG + Chr5:104411820-104411839 None:intergenic 50.0%
GTCTGCACCCATGGCTTAAT+AGG + Chr5:104414035-104414054 None:intergenic 50.0%
GTGAACACATGTTGCTCCTG+AGG + Chr5:104413091-104413110 None:intergenic 50.0%
GTGGAAGAAAAAGGAGGAGG+TGG + Chr5:104409591-104409610 None:intergenic 50.0%
GTGGATGAGAAACATGGAGG+AGG + Chr5:104409465-104409484 None:intergenic 50.0%
GTGGCTCTTCGAATACGAAC+TGG - Chr5:104410567-104410586 MsG0580029953.01.T01:intron 50.0%
GTGTCTCTTCCCTTGGACTT+CGG - Chr5:104411555-104411574 MsG0580029953.01.T01:intron 50.0%
GTTATGCTGCGATGTCGTAG+CGG - Chr5:104412182-104412201 MsG0580029953.01.T01:intron 50.0%
TACTCAACTGCAGTGACAGG+TGG - Chr5:104411439-104411458 MsG0580029953.01.T01:intron 50.0%
TCCTGCCAATGACAGGCAAA+GGG + Chr5:104413924-104413943 None:intergenic 50.0%
TCGAGAGAAGTAGCTCCATC+AGG + Chr5:104409913-104409932 None:intergenic 50.0%
TGAATGAGTAGCAGCAGGAG+CGG + Chr5:104409490-104409509 None:intergenic 50.0%
TGACTGGAACAACACTGCCA+AGG - Chr5:104411892-104411911 MsG0580029953.01.T01:intron 50.0%
TGCTCCTGAGGAAGCAAATC+TGG + Chr5:104413079-104413098 None:intergenic 50.0%
TGTCTCTTCCCTTGGACTTC+GGG - Chr5:104411556-104411575 MsG0580029953.01.T01:intron 50.0%
TTTGGCCATGCTTCCTTCCA+GGG - Chr5:104413022-104413041 MsG0580029953.01.T01:intron 50.0%
! ACCTCACATGCACCGTTTTG+GGG - Chr5:104413168-104413187 MsG0580029953.01.T01:intron 50.0%
! ACTTGGAGAAAGCATGTGCC+TGG - Chr5:104411662-104411681 MsG0580029953.01.T01:intron 50.0%
! AGTGTTGTTCCAGTCAAGGG+CGG + Chr5:104411888-104411907 None:intergenic 50.0%
! CAACCTCACATGCACCGTTT+TGG - Chr5:104413166-104413185 MsG0580029953.01.T01:intron 50.0%
! CAGTCAAGGGCGGTATGTTT+TGG + Chr5:104411878-104411897 None:intergenic 50.0%
! CCTTCCAGATTTGCTTCCTC+AGG - Chr5:104413072-104413091 MsG0580029953.01.T01:intron 50.0%
! GAGTCCGAATGGATAGTGGT+GGG - Chr5:104411694-104411713 MsG0580029953.01.T01:intron 50.0%
! GGACACAGTTCTCAGGTTGT+AGG + Chr5:104414013-104414032 None:intergenic 50.0%
! GGCAGTGTTGTTCCAGTCAA+GGG + Chr5:104411891-104411910 None:intergenic 50.0%
! TGGCAGTGTTGTTCCAGTCA+AGG + Chr5:104411892-104411911 None:intergenic 50.0%
! TGTGGGTGTCATGTCGGTAT+TGG - Chr5:104410441-104410460 MsG0580029953.01.T01:intron 50.0%
!! GCACTGGTCTTATATCAGCC+GGG + Chr5:104414231-104414250 None:intergenic 50.0%
!! TATATCAGCCGGGCTAGTAC+GGG + Chr5:104414221-104414240 None:intergenic 50.0%
!! TCCAAGAAGGCATCAACTCC+GGG + Chr5:104413399-104413418 None:intergenic 50.0%
!!! GTTCAGGTAGGGTTTTGGCT+TGG + Chr5:104409310-104409329 None:intergenic 50.0%
AAAGCATGTGCCTGGCGTGT+GGG - Chr5:104411670-104411689 MsG0580029953.01.T01:intron 55.0%
ACCTCCCACTAGGTGGTTTG+AGG - Chr5:104411783-104411802 MsG0580029953.01.T01:intron 55.0%
ATTCCAGCGGTTAGGGGAAG+CGG + Chr5:104409613-104409632 None:intergenic 55.0%
CACCGATGGCAGCGTATTTG+AGG + Chr5:104409638-104409657 None:intergenic 55.0%
CCAGTGCTGCAGTCTTACCA+AGG - Chr5:104414244-104414263 MsG0580029953.01.T01:five_prime_UTR 55.0%
CCCACTAGGTGGTTTGAGGA+AGG - Chr5:104411787-104411806 MsG0580029953.01.T01:intron 55.0%
CCCTTCCTCAAACCACCTAG+TGG + Chr5:104411791-104411810 None:intergenic 55.0%
CCTTGGTAAGACTGCAGCAC+TGG + Chr5:104414247-104414266 None:intergenic 55.0%
CGATGACGATGATGCTGCGA+CGG + Chr5:104409409-104409428 None:intergenic 55.0%
CGCAACATTCCCGAAGTCCA+AGG + Chr5:104411568-104411587 None:intergenic 55.0%
CGCCTTGCTCGTCTTATGCT+TGG + Chr5:104411010-104411029 None:intergenic 55.0%
CTCCCTTCTCAACTCCTCTC+AGG + Chr5:104411751-104411770 None:intergenic 55.0%
CTTTGGCCATGCTTCCTTCC+AGG - Chr5:104413021-104413040 MsG0580029953.01.T01:intron 55.0%
GAAAAAGGAGGAGGTGGAGG+AGG + Chr5:104409585-104409604 None:intergenic 55.0%
GAGGAGTGACTTTGGCGAAG+CGG + Chr5:104409440-104409459 None:intergenic 55.0%
GCCCAAGCAGTTATCCTGAG+AGG - Chr5:104411734-104411753 MsG0580029953.01.T01:intron 55.0%
GCGGTGGAAGAAAAAGGAGG+AGG + Chr5:104409594-104409613 None:intergenic 55.0%
GCGGTGGATGAGAAACATGG+AGG + Chr5:104409468-104409487 None:intergenic 55.0%
GGAACAACACTGCCAAGGGT+AGG - Chr5:104411897-104411916 MsG0580029953.01.T01:intron 55.0%
GGAAGAAGGTGGAGGAGTAG+CGG + Chr5:104409556-104409575 None:intergenic 55.0%
GGAGGTGAATGAGTAGCAGC+AGG + Chr5:104409495-104409514 None:intergenic 55.0%
GGGGAAGCGGTGGAAGAAAA+AGG + Chr5:104409600-104409619 None:intergenic 55.0%
GGTACTTGGTCCCCGAAAGA+AGG - Chr5:104411835-104411854 MsG0580029953.01.T01:intron 55.0%
GTAGCCGGTTACGCCTCTTA+CGG - Chr5:104409678-104409697 MsG0580029953.01.T01:intron 55.0%
GTGACTTTGGCGAAGCGGAA+TGG + Chr5:104409435-104409454 None:intergenic 55.0%
TCCCCAAAACGGTGCATGTG+AGG + Chr5:104413172-104413191 None:intergenic 55.0%
TCCCTTTGCCTGTCATTGGC+AGG - Chr5:104413920-104413939 MsG0580029953.01.T01:CDS 55.0%
TCCTCAAACCACCTAGTGGG+AGG + Chr5:104411787-104411806 None:intergenic 55.0%
! CGAACCGTAAGAGGCGTAAC+CGG + Chr5:104409685-104409704 None:intergenic 55.0%
! CGAGTCCGAATGGATAGTGG+TGG - Chr5:104411693-104411712 MsG0580029953.01.T01:intron 55.0%
! GTAAGAGGCGTAACCGGCTA+CGG + Chr5:104409679-104409698 None:intergenic 55.0%
!! ACCCGGAGTTGATGCCTTCT+TGG - Chr5:104413395-104413414 MsG0580029953.01.T01:intron 55.0%
!!! AGGGTTTTGGCTTGGCTTGG+TGG + Chr5:104409302-104409321 None:intergenic 55.0%
!!! GGTAGGGTTTTGGCTTGGCT+TGG + Chr5:104409305-104409324 None:intergenic 55.0%
ATGAGTAGCAGCAGGAGCGG+CGG + Chr5:104409487-104409506 None:intergenic 60.0%
GAAGAGGGAGGAGGTGGAGA+AGG + Chr5:104409534-104409553 None:intergenic 60.0%
GAAGGAGTGGCAGAAGGAGG+AGG + Chr5:104409516-104409535 None:intergenic 60.0%
GCGGCGGTGGATGAGAAACA+TGG + Chr5:104409471-104409490 None:intergenic 60.0%
GGAGAAGGAGTGGCAGAAGG+AGG + Chr5:104409519-104409538 None:intergenic 60.0%
GGGCGAGTCCGAATGGATAG+TGG - Chr5:104411690-104411709 MsG0580029953.01.T01:intron 60.0%
GGTGGAGAAGGAGTGGCAGA+AGG + Chr5:104409522-104409541 None:intergenic 60.0%
TACGGCGGTGGTTCCGGTTA+AGG + Chr5:104409661-104409680 None:intergenic 60.0%
! AGGTGGAGGAGTAGCGGAAG+AGG + Chr5:104409550-104409569 None:intergenic 60.0%
! GAAAGCATGTGCCTGGCGTG+TGG - Chr5:104411669-104411688 MsG0580029953.01.T01:intron 60.0%
! GCTGCCATCGGTGCCTTAAC+CGG - Chr5:104409645-104409664 MsG0580029953.01.T01:intron 60.0%
! GGTGGAGGAGTAGCGGAAGA+GGG + Chr5:104409549-104409568 None:intergenic 60.0%
!! GGTTCCGGTTAAGGCACCGA+TGG + Chr5:104409652-104409671 None:intergenic 60.0%
AGGAGGAGGTGGAGGAGGAG+TGG + Chr5:104409580-104409599 None:intergenic 65.0%
AGGAGGTGGAGGAGGAGTGG+CGG + Chr5:104409577-104409596 None:intergenic 65.0%
GGAGTGGCAGAAGGAGGAGG+AGG + Chr5:104409513-104409532 None:intergenic 65.0%
GGGAGGAGGTGGAGAAGGAG+TGG + Chr5:104409529-104409548 None:intergenic 65.0%
! AGAGGCGTAACCGGCTACGG+CGG + Chr5:104409676-104409695 None:intergenic 65.0%
! GGAGGAGGAGTGGCGGAAGA+AGG + Chr5:104409570-104409589 None:intergenic 65.0%
! GGAGGAGTAGCGGAAGAGGG+AGG + Chr5:104409546-104409565 None:intergenic 65.0%
! GGAGGAGTGGCGGAAGAAGG+TGG + Chr5:104409567-104409586 None:intergenic 65.0%
! GGAGTAGCGGAAGAGGGAGG+AGG + Chr5:104409543-104409562 None:intergenic 65.0%
! GGAGTGGCGGAAGAAGGTGG+AGG + Chr5:104409564-104409583 None:intergenic 65.0%
! GTAGCGGAAGAGGGAGGAGG+TGG + Chr5:104409540-104409559 None:intergenic 65.0%
!! GCTTGGCTTGGTGGAGACGC+CGG + Chr5:104409293-104409312 None:intergenic 65.0%
ACCGGAACCACCGCCGTAGC+CGG - Chr5:104409663-104409682 MsG0580029953.01.T01:intron 70.0%
ACCGGCTACGGCGGTGGTTC+CGG + Chr5:104409667-104409686 None:intergenic 70.0%
AGTAGCAGCAGGAGCGGCGG+TGG + Chr5:104409484-104409503 None:intergenic 70.0%
CCACCGCTTCCCCTAACCGC+TGG - Chr5:104409607-104409626 MsG0580029953.01.T01:CDS 70.0%
CCAGCGGTTAGGGGAAGCGG+TGG + Chr5:104409610-104409629 None:intergenic 70.0%
GGCGTGTGGGCGAGTCCGAA+TGG - Chr5:104411683-104411702 MsG0580029953.01.T01:intron 70.0%
TTCGGACTCGCCCACACGCC+AGG + Chr5:104411683-104411702 None:intergenic 70.0%
GGCGTAACCGGCTACGGCGG+TGG + Chr5:104409673-104409692 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 104409287 104414318 104409287 ID=MsG0580029953.01;Name=MsG0580029953.01
Chr5 mRNA 104409287 104414318 104409287 ID=MsG0580029953.01.T01;Parent=MsG0580029953.01;Name=MsG0580029953.01.T01;_AED=0.40;_eAED=0.42;_QI=85|0.75|0.55|1|0.75|0.77|9|0|379
Chr5 exon 104409287 104409393 104409287 ID=MsG0580029953.01.T01:exon:7142;Parent=MsG0580029953.01.T01
Chr5 exon 104409504 104409663 104409504 ID=MsG0580029953.01.T01:exon:7141;Parent=MsG0580029953.01.T01
Chr5 exon 104409941 104410039 104409941 ID=MsG0580029953.01.T01:exon:7140;Parent=MsG0580029953.01.T01
Chr5 exon 104410135 104410239 104410135 ID=MsG0580029953.01.T01:exon:7139;Parent=MsG0580029953.01.T01
Chr5 exon 104410449 104410562 104410449 ID=MsG0580029953.01.T01:exon:7138;Parent=MsG0580029953.01.T01
Chr5 exon 104410672 104410764 104410672 ID=MsG0580029953.01.T01:exon:7137;Parent=MsG0580029953.01.T01
Chr5 exon 104412144 104412184 104412144 ID=MsG0580029953.01.T01:exon:7136;Parent=MsG0580029953.01.T01
Chr5 exon 104413668 104413760 104413668 ID=MsG0580029953.01.T01:exon:7135;Parent=MsG0580029953.01.T01
Chr5 exon 104413906 104414318 104413906 ID=MsG0580029953.01.T01:exon:7134;Parent=MsG0580029953.01.T01
Chr5 five_prime_UTR 104414234 104414318 104414234 ID=MsG0580029953.01.T01:five_prime_utr;Parent=MsG0580029953.01.T01
Chr5 CDS 104413906 104414233 104413906 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104413668 104413760 104413668 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104412144 104412184 104412144 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104410672 104410764 104410672 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104410449 104410562 104410449 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104410135 104410239 104410135 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104409941 104410039 104409941 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104409504 104409663 104409504 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Chr5 CDS 104409287 104409393 104409287 ID=MsG0580029953.01.T01:cds;Parent=MsG0580029953.01.T01
Gene Sequence

>MsG0580029953.01.T01

ATGTCTCTCCAAATTCTCCGATCTCGATTCTTCTCCGTCGCAGCATCATCGTCATCGAAGCCATTCCGCTTCGCCAAAGTCACTCCTCAACCTCCTCCATGTTTCTCATCCACCGCCGCTCCTGCTGCTACTCATTCACCTCCTCCTCCTTCTGCCACTCCTTCTCCACCTCCTCCCTCTTCCGCTACTCCTCCACCTTCTTCCGCCACTCCTCCTCCACCTCCTCCTTTTTCTTCCACCGCTTCCCCTAACCGCTGGAATTTCCTCAAATACGCTGCCATCGGTGCCTTAACCGGAACCACCGCCGTAGCCGGTTACGCCTCTTACGCTTATAGTTCGGACGAAATTGAGGAGAAAACGAAGTCGTTTCGTGATTCCGCTAAGTACACTCCACCTGATGGAGCTACTTCTCTCGATGTTAAAATTTCAAGGGATGGTATACTCAACTGCAGTGACAGGTGGCTTGCTGATTTTCCTGCATGTAATATTTTAGTGCCTGCTAAAGCAGTAGAGCTTTATTTGGATGCAAGAAGGTTTATTGAAGAACACGTTAGGGGTTATACAGAACCATACACAGACAAGCTCCTTCCAGATTTGCTTCCTCAGGAGCAACATGTGTTCACACTTGTTCTAGATCTCAATGAAACATTGATTCACTACATTTGGACGCGAGATACAAGCTGGCAGACTTTTAAAAGACCCGGAGTTGATGCCTTCTTGGAACATCTAGCTCAGTTCTTTGAAATAGTGGTGTATACAGATGAACAGAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATCCTAAGCACTGCATTAGGTACAGGCTCTCGAGACCTGCTACTAAGTATCAGGATGGGAAACACTATAGAGATCTTTCAAAACTAAACAGGAATCCTGCAAAAGTTATGTACTTAAGTGGCCATGCTTTAGAAAGTTGCCTACAACCTGAGAACTGTGTCCCTATTAAGCCATGGGTGCAGACTGATAAAGATGATACAGCTCTTGTGGATTTCATACCATTCCTTGAGTTTATTGCCCGTACTAGCCCGGCTGATATAAGACCAGTGCTGCAGTCTTACCAAGGATGTGATATTCCGAGTGAATTCCTCAGGCGTTTCAAATTGCATAAGGAGTAA
Protein sequence

>MsG0580029953.01.T01

MSLQILRSRFFSVAASSSSKPFRFAKVTPQPPPCFSSTAAPAATHSPPPPSATPSPPPPSSATPPPSSATPPPPPPFSSTASPNRWNFLKYAAIGALTGTTAVAGYASYAYSSDEIEEKTKSFRDSAKYTPPDGATSLDVKISRDGILNCSDRWLADFPACNILVPAKAVELYLDARRFIEEHVRGYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIWTRDTSWQTFKRPGVDAFLEHLAQFFEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPATKYQDGKHYRDLSKLNRNPAKVMYLSGHALESCLQPENCVPIKPWVQTDKDDTALVDFIPFLEFIARTSPADIRPVLQSYQGCDIPSEFLRRFKLHKE*