AlfalfaGEDB | MsG0880043950.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048357.01	MsG0880043950.01	0.813305	2.737820e-51	1.781430e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Find 17 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTCCATGTAGCCCT+TGG	0.537621	8:+33253821	None:intergenic
AAACACTTATAAGCCTTTGG+TGG	0.528376	8:-33253965	MsG0880043950.01.T01:CDS
AAGGGCTACATGGAACATTT+TGG	0.246156	8:-33253819	MsG0880043950.01.T01:CDS
AGATATTGATGAGCATTATA+AGG	0.502676	8:-33253942	MsG0880043950.01.T01:CDS
ATGAGGATATTGACCCTCCA+AGG	0.524252	8:-33253838	MsG0880043950.01.T01:CDS
ATGTTCCATGTAGCCCTTGG+AGG	0.532067	8:+33253824	None:intergenic
CAACCTTATAAATTACTTCA+AGG	0.393345	8:+33253905	None:intergenic
CATCCTTGAAGTAATTTATA+AGG	0.251367	8:-33253908	MsG0880043950.01.T01:CDS
CTCATCAATATCTCCACCAA+AGG	0.579449	8:+33253952	None:intergenic
GAAGTAATTTATAAGGTTGA+TGG	0.349080	8:-33253901	MsG0880043950.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTTATAAGCCTTTGG+TGG	-	Chr8:33253845-33253864	MsG0880043950.01.T01:CDS	35.0%
GAGCATTATAAGGTCCTTAA+AGG	-	Chr8:33253878-33253897	MsG0880043950.01.T01:CDS	35.0%
TACTTCAAGGATGACCTTTA+AGG	+	Chr8:33253895-33253914	None:intergenic	35.0%
AAAATGTTCCATGTAGCCCT+TGG	+	Chr8:33253992-33254011	None:intergenic	40.0%
CTCATCAATATCTCCACCAA+AGG	+	Chr8:33253861-33253880	None:intergenic	40.0%
ATGAGGATATTGACCCTCCA+AGG	-	Chr8:33253972-33253991	MsG0880043950.01.T01:CDS	45.0%
TGAGGATATTGACCCTCCAA+GGG	-	Chr8:33253973-33253992	MsG0880043950.01.T01:CDS	45.0%
ATGTTCCATGTAGCCCTTGG+AGG	+	Chr8:33253989-33254008	None:intergenic	50.0%
TGTTCCATGTAGCCCTTGGA+GGG	+	Chr8:33253988-33254007	None:intergenic	50.0%
GATGGCACTGCTGCTGCTAA+AGG	-	Chr8:33253927-33253946	MsG0880043950.01.T01:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	33253807	33254025	33253807	ID=MsG0880043950.01;Name=MsG0880043950.01
Chr8	mRNA	33253807	33254025	33253807	ID=MsG0880043950.01.T01;Parent=MsG0880043950.01;Name=MsG0880043950.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|72
Chr8	exon	33253807	33254025	33253807	ID=MsG0880043950.01.T01:exon:10160;Parent=MsG0880043950.01.T01
Chr8	CDS	33253807	33254025	33253807	ID=MsG0880043950.01.T01:cds;Parent=MsG0880043950.01.T01

Gene Sequence	>MsG0880043950.01.T01 ATGAAGAGTGTTGAAGAAGTTGATGAACTGAATAAAAAAAACACTTATAAGCCTTTGGTGGAGATATTGATGAGCATTATAAGGTCCTTAAAGGTCATCCTTGAAGTAATTTATAAGGTTGATGGCACTGCTGCTGCTAAAGGACAGTTTAATATGAGAAGATCAATGAGGATATTGACCCTCCAAGGGCTACATGGAACATTTTGGCAAAGTCACTAG
Protein sequence	>MsG0880043950.01.T01 MKSVEEVDELNKKNTYKPLVEILMSIIRSLKVILEVIYKVDGTAAAKGQFNMRRSMRILTLQGLHGTFWQSH*

M. sativa cultivar ZhongmuNo.1 / MsG0880043950.01