Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048357.01.T01 | RHN66888.1 | 91.007 | 278 | 18 | 3 | 1 | 277 | 59 | 330 | 1.71E-127 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048357.01.T01 | Q9S728 | 57.627 | 177 | 52 | 5 | 118 | 276 | 134 | 305 | 2.54E-56 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048357.01.T01 | A0A396IQA7 | 91.007 | 278 | 18 | 3 | 1 | 277 | 59 | 330 | 8.17e-128 | 375 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0180000036.01 | 0.813535 | 2.437030e-51 | 1.595737e-48 |
| MsG0080048357.01 | MsG0180000404.01 | 0.805547 | 1.266512e-49 | 6.719122e-47 |
| MsG0080048357.01 | MsG0180000632.01 | 0.874063 | 9.050191e-68 | 4.017007e-64 |
| MsG0080048357.01 | MsG0180000994.01 | 0.832232 | 1.062997e-55 | 1.180843e-52 |
| MsG0080048357.01 | MsG0180001200.01 | 0.877925 | 4.249722e-69 | 2.176822e-65 |
| MsG0080048357.01 | MsG0180001771.01 | 0.884777 | 1.434936e-71 | 9.594007e-68 |
| MsG0080048357.01 | MsG0180003431.01 | 0.830629 | 2.637689e-55 | 2.794489e-52 |
| MsG0080048357.01 | MsG0180003741.01 | 0.882940 | 6.831543e-71 | 4.244328e-67 |
| MsG0080048357.01 | MsG0180005540.01 | 0.847303 | 1.259386e-59 | 2.228582e-56 |
| MsG0080048357.01 | MsG0280007197.01 | 0.809227 | 2.099687e-50 | 1.225920e-47 |
| MsG0080048357.01 | MsG0280007252.01 | 0.805882 | 1.077167e-49 | 5.764258e-47 |
| MsG0080048357.01 | MsG0280007305.01 | 0.909706 | 4.232623e-82 | 8.339962e-78 |
| MsG0080048357.01 | MsG0280007414.01 | 0.865280 | 6.620014e-65 | 2.141825e-61 |
| MsG0080048357.01 | MsG0280007506.01 | 0.806612 | 7.558783e-50 | 4.120871e-47 |
| MsG0080048357.01 | MsG0280007884.01 | 0.803178 | 3.945844e-49 | 1.969702e-46 |
| MsG0080048357.01 | MsG0280008390.01 | 0.839704 | 1.351226e-57 | 1.881211e-54 |
| MsG0080048357.01 | MsG0280008391.01 | 0.850569 | 1.559653e-60 | 3.068197e-57 |
| MsG0080048357.01 | MsG0280008392.01 | 0.850485 | 1.647636e-60 | 3.232020e-57 |
| MsG0080048357.01 | MsG0280008395.01 | 0.861593 | 9.197210e-64 | 2.616192e-60 |
| MsG0080048357.01 | MsG0280008397.01 | 0.815335 | 9.744591e-52 | 6.699528e-49 |
| MsG0080048357.01 | MsG0280010163.01 | 0.847280 | 1.278087e-59 | 2.260103e-56 |
| MsG0080048357.01 | MsG0280010320.01 | 0.872813 | 2.382320e-67 | 1.010587e-63 |
| MsG0080048357.01 | MsG0380011496.01 | 0.893165 | 8.099416e-75 | 7.630974e-71 |
| MsG0080048357.01 | MsG0380011501.01 | 0.876703 | 1.130880e-68 | 5.536136e-65 |
| MsG0080048357.01 | MsG0380011675.01 | 0.834980 | 2.189828e-56 | 2.641440e-53 |
| MsG0080048357.01 | MsG0380016465.01 | 0.897748 | 1.040712e-76 | 1.192591e-72 |
| MsG0080048357.01 | MsG0380016466.01 | 0.859834 | 3.144047e-63 | 8.418446e-60 |
| MsG0080048357.01 | MsG0380017823.01 | 0.800570 | 1.354866e-48 | 6.329635e-46 |
| MsG0080048357.01 | MsG0380017869.01 | 0.844311 | 8.176339e-59 | 1.314707e-55 |
| MsG0080048357.01 | MsG0480018909.01 | 0.905507 | 3.991861e-80 | 6.477722e-76 |
| MsG0080048357.01 | MsG0480019279.01 | 0.851737 | 7.304988e-61 | 1.492828e-57 |
| MsG0080048357.01 | MsG0480020064.01 | 0.823894 | 1.082988e-53 | 9.446366e-51 |
| MsG0080048357.01 | MsG0480020091.01 | 0.808479 | 3.034765e-50 | 1.737126e-47 |
| MsG0080048357.01 | MsG0480020096.01 | 0.860097 | 2.619169e-63 | 7.077095e-60 |
| MsG0080048357.01 | MsG0480020517.01 | 0.805579 | 1.246927e-49 | 6.620884e-47 |
| MsG0080048357.01 | MsG0480024022.01 | 0.900840 | 4.897903e-78 | 6.441728e-74 |
| MsG0080048357.01 | MsG0580024094.01 | 0.840951 | 6.381882e-58 | 9.236207e-55 |
| MsG0080048357.01 | MsG0580024966.01 | 0.805875 | 1.080933e-49 | 5.783335e-47 |
| MsG0080048357.01 | MsG0580025466.01 | 0.837449 | 5.163291e-57 | 6.709574e-54 |
| MsG0080048357.01 | MsG0580025973.01 | 0.828448 | 8.939611e-55 | 8.888678e-52 |
| MsG0080048357.01 | MsG0580025974.01 | 0.848380 | 6.361121e-60 | 1.165100e-56 |
| MsG0080048357.01 | MsG0580026000.01 | 0.804106 | 2.533154e-49 | 1.295013e-46 |
| MsG0080048357.01 | MsG0580026198.01 | 0.814399 | 1.571431e-51 | 1.053358e-48 |
| MsG0080048357.01 | MsG0580027925.01 | 0.862736 | 4.103762e-64 | 1.214446e-60 |
| MsG0080048357.01 | MsG0580028636.01 | 0.810816 | 9.551372e-51 | 5.815813e-48 |
| MsG0080048357.01 | MsG0580028960.01 | 0.814485 | 1.503811e-51 | 1.010366e-48 |
| MsG0080048357.01 | MsG0580029310.01 | 0.896056 | 5.319809e-76 | 5.660238e-72 |
| MsG0080048357.01 | MsG0580029405.01 | 0.845023 | 5.257083e-59 | 8.645747e-56 |
| MsG0080048357.01 | MsG0580029406.01 | 0.815712 | 8.032676e-52 | 5.580109e-49 |
| MsG0080048357.01 | MsG0580029417.01 | 0.895886 | 6.254131e-76 | 6.606272e-72 |
| MsG0080048357.01 | MsG0580029418.01 | 0.923989 | 1.280284e-89 | 5.280104e-85 |
| MsG0080048357.01 | MsG0680030328.01 | 0.822427 | 2.383060e-53 | 1.994126e-50 |
| MsG0080048357.01 | MsG0680031342.01 | 0.877760 | 4.854060e-69 | 2.470132e-65 |
| MsG0080048357.01 | MsG0680031365.01 | 0.807909 | 4.013646e-50 | 2.263039e-47 |
| MsG0080048357.01 | MsG0680031428.01 | 0.820584 | 6.351132e-53 | 5.045320e-50 |
| MsG0080048357.01 | MsG0680031707.01 | 0.924395 | 7.463844e-90 | 3.144795e-85 |
| MsG0080048357.01 | MsG0680031959.01 | 0.863118 | 3.127721e-64 | 9.377377e-61 |
| MsG0080048357.01 | MsG0680033143.01 | 0.867591 | 1.222514e-65 | 4.291644e-62 |
| MsG0080048357.01 | MsG0680034835.01 | 0.854081 | 1.560896e-61 | 3.445931e-58 |
| MsG0080048357.01 | MsG0680035658.01 | 0.811078 | 8.379537e-51 | 5.138051e-48 |
| MsG0080048357.01 | MsG0680035683.01 | 0.849127 | 3.948206e-60 | 7.410850e-57 |
| MsG0080048357.01 | MsG0780036148.01 | 0.846464 | 2.137183e-59 | 3.682062e-56 |
| MsG0080048357.01 | MsG0780037420.01 | 0.815736 | 7.933517e-52 | 5.515029e-49 |
| MsG0080048357.01 | MsG0780038048.01 | 0.805062 | 1.600347e-49 | 8.385354e-47 |
| MsG0080048357.01 | MsG0780040286.01 | 0.818627 | 1.775837e-52 | 1.336177e-49 |
| MsG0080048357.01 | MsG0780040287.01 | 0.803859 | 2.850599e-49 | 1.448119e-46 |
| MsG0080048357.01 | MsG0780040432.01 | 0.807990 | 3.857980e-50 | 2.180044e-47 |
| MsG0080048357.01 | MsG0780040846.01 | 0.900696 | 5.658717e-78 | 7.400972e-74 |
| MsG0080048357.01 | MsG0780040855.01 | 0.805011 | 1.639935e-49 | 8.581489e-47 |
| MsG0080048357.01 | MsG0780040966.01 | 0.901606 | 2.260243e-78 | 3.077150e-74 |
| MsG0080048357.01 | MsG0780041259.01 | 0.869689 | 2.565114e-66 | 9.712739e-63 |
| MsG0080048357.01 | MsG0780041676.01 | 0.822251 | 2.617473e-53 | 2.179160e-50 |
| MsG0080048357.01 | MsG0780041698.01 | 0.893322 | 7.004945e-75 | 6.641221e-71 |
| MsG0080048357.01 | MsG0780041699.01 | 0.801883 | 7.298445e-49 | 3.525102e-46 |
| MsG0080048357.01 | MsG0880041834.01 | 0.808499 | 3.005252e-50 | 1.721118e-47 |
| MsG0080048357.01 | MsG0880041858.01 | 0.891497 | 3.763197e-74 | 3.307851e-70 |
| MsG0080048357.01 | MsG0880042442.01 | 0.840410 | 8.843465e-58 | 1.258658e-54 |
| MsG0080048357.01 | MsG0880042958.01 | 0.842988 | 1.847452e-58 | 2.849338e-55 |
| MsG0080048357.01 | MsG0880042959.01 | 0.830268 | 3.231738e-55 | 3.388182e-52 |
| MsG0080048357.01 | MsG0880043950.01 | 0.813305 | 2.737820e-51 | 1.781430e-48 |
| MsG0080048357.01 | MsG0880045585.01 | 0.895914 | 6.090700e-76 | 6.441645e-72 |
| MsG0080048357.01 | MsG0880045586.01 | 0.897803 | 9.867602e-77 | 1.133345e-72 |
| MsG0080048357.01 | MsG0880046580.01 | 0.819168 | 1.338421e-52 | 1.022205e-49 |
| MsG0080048357.01 | MsG0880046636.01 | 0.837217 | 5.919743e-57 | 7.636948e-54 |
| MsG0080048357.01 | MsG0880046942.01 | 0.839941 | 1.172245e-57 | 1.644296e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048357.01.T01 | MTR_3g089570 | 91.007 | 278 | 18 | 3 | 1 | 277 | 1 | 272 | 2.01e-130 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048357.01.T01 | AT2G42840 | 57.627 | 177 | 52 | 5 | 118 | 276 | 134 | 305 | 2.59e-57 | 186 |
Find 115 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAATTAATGAAAGCTTTA+TGG | 0.095824 | contig281end:-4802 | MsG0080048357.01.T01:three_prime_UTR |
| TCTAGGTTGGTGGGGAAATA+TGG | 0.109920 | contig281end:-5255 | MsG0080048357.01.T01:CDS |
| CTTACACAACTGACCAAGTT+AGG | 0.249344 | contig281end:-5082 | MsG0080048357.01.T01:CDS |
| ATGAATTAGTTTGTTTGATT+TGG | 0.309369 | contig281end:-4937 | MsG0080048357.01.T01:three_prime_UTR |
| GGACTCATCCAGGAATAATA+TGG | 0.312895 | contig281end:-5283 | MsG0080048357.01.T01:CDS |
| GCAACTTACTTGCAAGTTCC+AGG | 0.317360 | contig281end:+6048 | MsG0080048357.01.T01:intergenic |
| TTATTAAGAACATTATATTA+AGG | 0.317983 | contig281end:-4905 | MsG0080048357.01.T01:three_prime_UTR |
| CATGACTATGATCAATTTCA+TGG | 0.347778 | contig281end:+4966 | MsG0080048357.01.T01:intergenic |
| GAAATATGGGAAATGCCTTT+GGG | 0.350660 | contig281end:-5241 | MsG0080048357.01.T01:CDS |
| GGAAATATGGGAAATGCCTT+TGG | 0.350960 | contig281end:-5242 | MsG0080048357.01.T01:CDS |
| AGAATTCCCCATATTATTCC+TGG | 0.352015 | contig281end:+5275 | MsG0080048357.01.T01:intergenic |
| CCAGGATCTATTGGTGTAGA+TGG | 0.361860 | contig281end:+6120 | MsG0080048357.01.T01:intergenic |
| TTTGGGGTGACTAATATTCC+AGG | 0.367636 | contig281end:-5224 | MsG0080048357.01.T01:CDS |
| CCACTTGATGGAGGGTTTGA+TGG | 0.369108 | contig281end:+6207 | MsG0080048357.01.T01:intergenic |
| GGAATAATATGGGGAATTCT+AGG | 0.377925 | contig281end:-5272 | MsG0080048357.01.T01:CDS |
| CCTTCCCCATCTCCCTTCCC+TGG | 0.386576 | contig281end:-6066 | MsG0080048357.01.T01:CDS |
| TGCTTCATTTCTCAACTCCT+TGG | 0.403101 | contig281end:-5120 | MsG0080048357.01.T01:CDS |
| TTGTGTTGCAGCAGCCTTGT+TGG | 0.413820 | contig281end:+5034 | MsG0080048357.01.T01:intergenic |
| CTAGGTTGGTGGGGAAATAT+GGG | 0.416346 | contig281end:-5254 | MsG0080048357.01.T01:CDS |
| GGTGGATCAGTTGGAGTTGA+TGG | 0.420624 | contig281end:+6165 | MsG0080048357.01.T01:intergenic |
| CTTCATTTGCCATCTTGAAA+AGG | 0.430225 | contig281end:+5006 | MsG0080048357.01.T01:intergenic |
| CTAACTTGGTCAGTTGTGTA+AGG | 0.430724 | contig281end:+5083 | MsG0080048357.01.T01:intergenic |
| GATGGGGAAGGAAGGAAAGG+TGG | 0.432710 | contig281end:+6078 | MsG0080048357.01.T01:intergenic |
| ACTCCAACACCACCTTCAAC+TGG | 0.433721 | contig281end:-6300 | MsG0080048357.01.T01:CDS |
| AAAGGTGGTGTAGGAACAGT+AGG | 0.438620 | contig281end:+6093 | MsG0080048357.01.T01:intergenic |
| CAAGTTCCAGGGAAGGGAGA+TGG | 0.440600 | contig281end:+6060 | MsG0080048357.01.T01:intergenic |
| GGAGGGTTTGATGGTGTTGA+AGG | 0.443891 | contig281end:+6216 | MsG0080048357.01.T01:intergenic |
| TATGATCAATTTCATGGTCT+AGG | 0.447170 | contig281end:+4972 | MsG0080048357.01.T01:intergenic |
| GTAGGAGTGCCAGGATCTAT+TGG | 0.447810 | contig281end:+6111 | MsG0080048357.01.T01:intergenic |
| GATGGTGTTGAAGGAGTAGA+AGG | 0.457615 | contig281end:+6252 | MsG0080048357.01.T01:intergenic |
| GACTCATCCAGGAATAATAT+GGG | 0.459996 | contig281end:-5282 | MsG0080048357.01.T01:CDS |
| TTTGATGGTGTTGAAGGTGT+TGG | 0.464631 | contig281end:+6222 | MsG0080048357.01.T01:intergenic |
| ATGCAAACCTGTCCCTAACT+TGG | 0.469578 | contig281end:+5069 | MsG0080048357.01.T01:intergenic |
| AACACAAGAACTGATGGTTT+AGG | 0.469650 | contig281end:-5164 | MsG0080048357.01.T01:CDS |
| TTATAGTATCCACCACTTGA+TGG | 0.470071 | contig281end:+6195 | MsG0080048357.01.T01:intergenic |
| AAGTTCCAGGGAAGGGAGAT+GGG | 0.476491 | contig281end:+6061 | MsG0080048357.01.T01:intergenic |
| GGATTATGTGATGGTGTTGA+AGG | 0.479819 | contig281end:+6243 | MsG0080048357.01.T01:intergenic |
| TGGAATAAGAGAAGTGAGTG+AGG | 0.484898 | contig281end:+6738 | MsG0080048357.01.T01:intergenic |
| CATCCAGTTGAAGGTGGTGT+TGG | 0.495066 | contig281end:+6297 | MsG0080048357.01.T01:intergenic |
| GGAAGGGAGATGGGGAAGGA+AGG | 0.502197 | contig281end:+6070 | MsG0080048357.01.T01:intergenic |
| GTAGGAACAGTAGGAGTGCC+AGG | 0.503622 | contig281end:+6102 | MsG0080048357.01.T01:intergenic |
| CTTTCCAACACAAGAACTGA+TGG | 0.504329 | contig281end:-5170 | MsG0080048357.01.T01:CDS |
| GGAGATGGGGAAGGAAGGAA+AGG | 0.504748 | contig281end:+6075 | MsG0080048357.01.T01:intergenic |
| ACTGTTGAAGATCCACATTC+AGG | 0.508660 | contig281end:-6596 | MsG0080048357.01.T01:CDS |
| TGCAACAAGCACTGTGAACA+TGG | 0.512397 | contig281end:+6658 | MsG0080048357.01.T01:intergenic |
| TAATATGGGGAATTCTAGGT+TGG | 0.520470 | contig281end:-5268 | MsG0080048357.01.T01:CDS |
| AATATTCCAGGGTTTACTCC+TGG | 0.524426 | contig281end:-5212 | MsG0080048357.01.T01:CDS |
| TAAACCATCAGTTCTTGTGT+TGG | 0.525884 | contig281end:+5166 | MsG0080048357.01.T01:intergenic |
| TTACACAACTGACCAAGTTA+GGG | 0.525939 | contig281end:-5081 | MsG0080048357.01.T01:CDS |
| AGCTACTGGAGGACTCATCC+AGG | 0.526289 | contig281end:-5293 | MsG0080048357.01.T01:CDS |
| GAAGGAAGGAAAGGTGGTGT+AGG | 0.527882 | contig281end:+6084 | MsG0080048357.01.T01:intergenic |
| TATGGGGAATTCTAGGTTGG+TGG | 0.528656 | contig281end:-5265 | MsG0080048357.01.T01:CDS |
| CCAGGGAAGGGAGATGGGGA+AGG | 0.539492 | contig281end:+6066 | MsG0080048357.01.T01:intergenic |
| GAATATCCACATCCAGTTGA+AGG | 0.540702 | contig281end:+6288 | MsG0080048357.01.T01:intergenic |
| CAACTGACCAAGTTAGGGAC+AGG | 0.541089 | contig281end:-5076 | MsG0080048357.01.T01:CDS |
| ACACCACCTTCAACTGGATG+TGG | 0.541466 | contig281end:-6294 | MsG0080048357.01.T01:CDS |
| AGGAGTACTTCTCCATCTCA+TGG | 0.541512 | contig281end:-6381 | MsG0080048357.01.T01:CDS |
| CCATCTACACCAATAGATCC+TGG | 0.545229 | contig281end:-6120 | MsG0080048357.01.T01:CDS |
| GAATCAGAGAAAACTGATGA+AGG | 0.547203 | contig281end:+6569 | MsG0080048357.01.T01:intergenic |
| TACTTGCAAGTTCCAGGGAA+GGG | 0.548718 | contig281end:+6054 | MsG0080048357.01.T01:intergenic |
| AAGCACTGTGAACATGGAAA+AGG | 0.549652 | contig281end:+6664 | MsG0080048357.01.T01:intergenic |
| GAACATGGAAAAGGAAACAT+AGG | 0.554743 | contig281end:+6673 | MsG0080048357.01.T01:intergenic |
| GTTGGAAAGTGCTTGTGGTA+AGG | 0.554876 | contig281end:+5184 | MsG0080048357.01.T01:intergenic |
| AAAGTGACTGGTGGATCAGT+TGG | 0.565302 | contig281end:+6156 | MsG0080048357.01.T01:intergenic |
| CAACTTACTTGCAAGTTCCA+GGG | 0.565925 | contig281end:+6049 | MsG0080048357.01.T01:intergenic |
| GGTGGTGAGCTTCCATGAGA+TGG | 0.567793 | contig281end:+6369 | MsG0080048357.01.T01:intergenic |
| TTGGGGTGACTAATATTCCA+GGG | 0.568346 | contig281end:-5223 | MsG0080048357.01.T01:CDS |
| GGATCAGTTGGAGTTGATGG+TGG | 0.570978 | contig281end:+6168 | MsG0080048357.01.T01:intergenic |
| AATAAGAGAAGTGAGTGAGG+AGG | 0.578944 | contig281end:+6741 | MsG0080048357.01.T01:intergenic |
| AACATAATGCAGGCCCACAT+AGG | 0.579774 | contig281end:-6401 | MsG0080048357.01.T01:intron |
| GATGGTGGTGTCAAAGTGAC+TGG | 0.584003 | contig281end:+6144 | MsG0080048357.01.T01:intergenic |
| GAAGGTGTTGGATTATGTGA+TGG | 0.585952 | contig281end:+6234 | MsG0080048357.01.T01:intergenic |
| TTGCTGCGAAGAAAATGTGA+TGG | 0.589645 | contig281end:+6718 | MsG0080048357.01.T01:intergenic |
| GGTGATGAGCTTCCATGTGA+AGG | 0.591177 | contig281end:+6348 | MsG0080048357.01.T01:intergenic |
| ATGGGGAATTCTAGGTTGGT+GGG | 0.591873 | contig281end:-5264 | MsG0080048357.01.T01:CDS |
| CAGTTGTGTAAGGGAACTTG+TGG | 0.593107 | contig281end:+5093 | MsG0080048357.01.T01:intergenic |
| AGTATCCACCACTTGATGGA+GGG | 0.594468 | contig281end:+6199 | MsG0080048357.01.T01:intergenic |
| GCTTGTGGTAAGGTTAGACC+AGG | 0.598119 | contig281end:+5194 | MsG0080048357.01.T01:intergenic |
| TTACTTGCAAGTTCCAGGGA+AGG | 0.600468 | contig281end:+6053 | MsG0080048357.01.T01:intergenic |
| AAATATGGGAAATGCCTTTG+GGG | 0.602185 | contig281end:-5240 | MsG0080048357.01.T01:CDS |
| AGTTCCAGGGAAGGGAGATG+GGG | 0.604246 | contig281end:+6062 | MsG0080048357.01.T01:intergenic |
| TCACCACCATCACATGGTGG+AGG | 0.604865 | contig281end:-6330 | MsG0080048357.01.T01:CDS |
| GATGGAGAAGTACTCCTATG+TGG | 0.608784 | contig281end:+6387 | MsG0080048357.01.T01:intergenic |
| GATGAAGGATTTCCTGAATG+TGG | 0.608994 | contig281end:+6584 | MsG0080048357.01.T01:intergenic |
| GGAAGCTCACCACCTTCACA+TGG | 0.609355 | contig281end:-6360 | MsG0080048357.01.T01:CDS |
| CACCACCATCACATGGTGGA+GGG | 0.611558 | contig281end:-6329 | MsG0080048357.01.T01:CDS |
| ATGGAGAAGTACTCCTATGT+GGG | 0.616241 | contig281end:+6388 | MsG0080048357.01.T01:intergenic |
| TAACTTGGTCAGTTGTGTAA+GGG | 0.620778 | contig281end:+5084 | MsG0080048357.01.T01:intergenic |
| TAGTATCCACCACTTGATGG+AGG | 0.621034 | contig281end:+6198 | MsG0080048357.01.T01:intergenic |
| AGCTCATCACCACCATCACA+TGG | 0.624071 | contig281end:-6336 | MsG0080048357.01.T01:CDS |
| TAAGACCCTCCACCATGTGA+TGG | 0.626381 | contig281end:+6324 | MsG0080048357.01.T01:intergenic |
| GTTAGACCAGGAGTAAACCC+TGG | 0.627036 | contig281end:+5206 | MsG0080048357.01.T01:intergenic |
| TTAGGAGCACTCTACAGAGA+AGG | 0.629627 | contig281end:-5146 | MsG0080048357.01.T01:CDS |
| CCATCAAACCCTCCATCAAG+TGG | 0.632528 | contig281end:-6207 | MsG0080048357.01.T01:CDS |
| ATTGGTGTAGATGGAGATGG+TGG | 0.635553 | contig281end:+6129 | MsG0080048357.01.T01:intergenic |
| TGGGGAATTCTAGGTTGGTG+GGG | 0.637604 | contig281end:-5263 | MsG0080048357.01.T01:CDS |
| ATCATCACTTCACTCCAACA+AGG | 0.638513 | contig281end:-5048 | MsG0080048357.01.T01:CDS |
| TGAAGATTGCAAGAATCACA+AGG | 0.639496 | contig281end:+6621 | MsG0080048357.01.T01:intergenic |
| GATGAGCTTCCATGTGAAGG+TGG | 0.651216 | contig281end:+6351 | MsG0080048357.01.T01:intergenic |
| TATCCACATCCAGTTGAAGG+TGG | 0.658842 | contig281end:+6291 | MsG0080048357.01.T01:intergenic |
| TCAAACCCTCCATCAAGTGG+TGG | 0.659955 | contig281end:-6204 | MsG0080048357.01.T01:CDS |
| CTTGTGTTGGAAAGTGCTTG+TGG | 0.664673 | contig281end:+5179 | MsG0080048357.01.T01:intergenic |
| TCTATTGGTGTAGATGGAGA+TGG | 0.668449 | contig281end:+6126 | MsG0080048357.01.T01:intergenic |
| GGTGGTGTCAAAGTGACTGG+TGG | 0.668630 | contig281end:+6147 | MsG0080048357.01.T01:intergenic |
| GACCCTCCACCATGTGATGG+TGG | 0.670898 | contig281end:+6327 | MsG0080048357.01.T01:intergenic |
| AGGGAACTTGTGGTTCACCA+AGG | 0.670949 | contig281end:+5103 | MsG0080048357.01.T01:intergenic |
| ACTCATCCAGGAATAATATG+GGG | 0.672725 | contig281end:-5281 | MsG0080048357.01.T01:CDS |
| TGGAATATTAGTCACCCCAA+AGG | 0.674127 | contig281end:+5226 | MsG0080048357.01.T01:intergenic |
| GGAGTAGAAGGGTCATGTGG+TGG | 0.678752 | contig281end:+6264 | MsG0080048357.01.T01:intergenic |
| GAAGATTGCAAGAATCACAA+GGG | 0.687379 | contig281end:+6622 | MsG0080048357.01.T01:intergenic |
| GAAGGAGTAGAAGGGTCATG+TGG | 0.698916 | contig281end:+6261 | MsG0080048357.01.T01:intergenic |
| ATGGTGTTGAAGGAGTAGAA+GGG | 0.703404 | contig281end:+6253 | MsG0080048357.01.T01:intergenic |
| AAGATTGCAAGAATCACAAG+GGG | 0.706994 | contig281end:+6623 | MsG0080048357.01.T01:intergenic |
| TGAATGTGGATCTTCAACAG+TGG | 0.717622 | contig281end:+6598 | MsG0080048357.01.T01:intergenic |
| TCATCACCACCATCACATGG+TGG | 0.774824 | contig281end:-6333 | MsG0080048357.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATATTAACAATG+TGG | + | contig281end:5552-5571 | MsG0080048357.01.T01:intergenic | 10.0% |
| !! | TTAAATATTAAACAATGTTA+GGG | + | contig281end:5096-5115 | MsG0080048357.01.T01:intergenic | 10.0% |
| !! | TTATTAAGAACATTATATTA+AGG | - | contig281end:6657-6676 | MsG0080048357.01.T01:CDS | 10.0% |
| !!! | TTATACTACTTTTTTTTTAA+TGG | + | contig281end:6127-6146 | MsG0080048357.01.T01:intergenic | 10.0% |
| !! | ATATATATTAAAACAAGAGA+TGG | + | contig281end:6099-6118 | MsG0080048357.01.T01:intergenic | 15.0% |
| !! | CTTAAATATTAAACAATGTT+AGG | + | contig281end:5097-5116 | MsG0080048357.01.T01:intergenic | 15.0% |
| !! | TAATATTTGTTTCAAATAAC+AGG | - | contig281end:5621-5640 | MsG0080048357.01.T01:intron | 15.0% |
| !! | TGAAACAAATATTATGAAAT+AGG | + | contig281end:5615-5634 | MsG0080048357.01.T01:intergenic | 15.0% |
| !! | TTAAATCCATATACATAAAA+GGG | + | contig281end:5884-5903 | MsG0080048357.01.T01:intergenic | 15.0% |
| !! | TTTAATTAATGAAAGCTTTA+TGG | - | contig281end:6760-6779 | MsG0080048357.01.T01:five_prime_UTR | 15.0% |
| !!! | AAATTTTGAATAATGAAGTT+AGG | + | contig281end:5034-5053 | MsG0080048357.01.T01:intergenic | 15.0% |
| !!! | AATTTTGAATAATGAAGTTA+GGG | + | contig281end:5033-5052 | MsG0080048357.01.T01:intergenic | 15.0% |
| !! | AGCTAAACTAAAATTTAATG+TGG | + | contig281end:5676-5695 | MsG0080048357.01.T01:intergenic | 20.0% |
| !! | GTTAAATCCATATACATAAA+AGG | + | contig281end:5885-5904 | MsG0080048357.01.T01:intergenic | 20.0% |
| !! | TAATACTACTTATCTTTCTA+AGG | + | contig281end:5923-5942 | MsG0080048357.01.T01:intergenic | 20.0% |
| !!! | ATGAATAAAGTCCTTTTTAT+AGG | + | contig281end:5724-5743 | MsG0080048357.01.T01:intergenic | 20.0% |
| !!! | ATGAATTAGTTTGTTTGATT+TGG | - | contig281end:6625-6644 | MsG0080048357.01.T01:CDS | 20.0% |
| !!! | GTTTTGATAAGTAGTATATT+TGG | - | contig281end:5984-6003 | MsG0080048357.01.T01:intron | 20.0% |
| !!! | TGAATAAAGTCCTTTTTATA+GGG | + | contig281end:5723-5742 | MsG0080048357.01.T01:intergenic | 20.0% |
| !!! | TTAAATTTTAGTTTAGCTAG+TGG | - | contig281end:5678-5697 | MsG0080048357.01.T01:intron | 20.0% |
| !!! | ACAGATTAGTAGTTTTAACA+AGG | - | contig281end:6184-6203 | MsG0080048357.01.T01:CDS | 25.0% |
| !!! | ATGTCATTTTCCCTATAAAA+AGG | - | contig281end:5710-5729 | MsG0080048357.01.T01:intron | 25.0% |
| !!! | TAAGGTTTTTTGTTAGTTTG+TGG | - | contig281end:6675-6694 | MsG0080048357.01.T01:CDS | 25.0% |
| CATGACTATGATCAATTTCA+TGG | + | contig281end:6599-6618 | MsG0080048357.01.T01:intergenic | 30.0% | |
| GGTTACTAGATATAACTACA+TGG | + | contig281end:5075-5094 | MsG0080048357.01.T01:intergenic | 30.0% | |
| TATGATCAATTTCATGGTCT+AGG | + | contig281end:6593-6612 | MsG0080048357.01.T01:intergenic | 30.0% | |
| TGTTGTGTTTAACATAATGC+AGG | - | contig281end:5151-5170 | MsG0080048357.01.T01:CDS | 30.0% | |
| TTCAAATAACAGGAGAGATA+TGG | - | contig281end:5631-5650 | MsG0080048357.01.T01:intron | 30.0% | |
| ! | GAAACACCCTTTTATGTATA+TGG | - | contig281end:5875-5894 | MsG0080048357.01.T01:intron | 30.0% |
| ! | TACTTATCTTTCTAAGGAGT+TGG | + | contig281end:5917-5936 | MsG0080048357.01.T01:intergenic | 30.0% |
| !! | TTTTCAAGATGGCAAATGAA+GGG | - | contig281end:6558-6577 | MsG0080048357.01.T01:intron | 30.0% |
| AAATATGGGAAATGCCTTTG+GGG | - | contig281end:6322-6341 | MsG0080048357.01.T01:CDS | 35.0% | |
| AACACAAGAACTGATGGTTT+AGG | - | contig281end:6398-6417 | MsG0080048357.01.T01:intron | 35.0% | |
| AAGATTGCAAGAATCACAAG+GGG | + | contig281end:4942-4961 | MsG0080048357.01.T01:intergenic | 35.0% | |
| ACTCATCCAGGAATAATATG+GGG | - | contig281end:6281-6300 | MsG0080048357.01.T01:CDS | 35.0% | |
| AGAATTCCCCATATTATTCC+TGG | + | contig281end:6290-6309 | MsG0080048357.01.T01:intergenic | 35.0% | |
| CTTCATTTGCCATCTTGAAA+AGG | + | contig281end:6559-6578 | MsG0080048357.01.T01:intergenic | 35.0% | |
| GAAATATGGGAAATGCCTTT+GGG | - | contig281end:6321-6340 | MsG0080048357.01.T01:CDS | 35.0% | |
| GAACATGGAAAAGGAAACAT+AGG | + | contig281end:4892-4911 | MsG0080048357.01.T01:intergenic | 35.0% | |
| GAAGATTGCAAGAATCACAA+GGG | + | contig281end:4943-4962 | MsG0080048357.01.T01:intergenic | 35.0% | |
| GAATCAGAGAAAACTGATGA+AGG | + | contig281end:4996-5015 | MsG0080048357.01.T01:intergenic | 35.0% | |
| GACTCATCCAGGAATAATAT+GGG | - | contig281end:6280-6299 | MsG0080048357.01.T01:CDS | 35.0% | |
| GGAATAATATGGGGAATTCT+AGG | - | contig281end:6290-6309 | MsG0080048357.01.T01:CDS | 35.0% | |
| TAAACCATCAGTTCTTGTGT+TGG | + | contig281end:6399-6418 | MsG0080048357.01.T01:intergenic | 35.0% | |
| TAACTTGGTCAGTTGTGTAA+GGG | + | contig281end:6481-6500 | MsG0080048357.01.T01:intergenic | 35.0% | |
| TAATATGGGGAATTCTAGGT+TGG | - | contig281end:6294-6313 | MsG0080048357.01.T01:CDS | 35.0% | |
| TAGGGAAAATGACATAACAC+TGG | + | contig281end:5705-5724 | MsG0080048357.01.T01:intergenic | 35.0% | |
| TCTTCGCAGCAAAAAATCAT+GGG | - | contig281end:4855-4874 | MsG0080048357.01.T01:three_prime_UTR | 35.0% | |
| TGAAGATTGCAAGAATCACA+AGG | + | contig281end:4944-4963 | MsG0080048357.01.T01:intergenic | 35.0% | |
| TTACACAACTGACCAAGTTA+GGG | - | contig281end:6481-6500 | MsG0080048357.01.T01:intron | 35.0% | |
| TTATAGTATCCACCACTTGA+TGG | + | contig281end:5370-5389 | MsG0080048357.01.T01:intergenic | 35.0% | |
| TTCTTCGCAGCAAAAAATCA+TGG | - | contig281end:4854-4873 | MsG0080048357.01.T01:three_prime_UTR | 35.0% | |
| ! | TTTCTGTGATTTTCAGCTAC+TGG | - | contig281end:6255-6274 | MsG0080048357.01.T01:CDS | 35.0% |
| !! | CTTTTCAAGATGGCAAATGA+AGG | - | contig281end:6557-6576 | MsG0080048357.01.T01:intron | 35.0% |
| AATAAGAGAAGTGAGTGAGG+AGG | + | contig281end:4824-4843 | MsG0080048357.01.T01:intergenic | 40.0% | |
| AATATTCCAGGGTTTACTCC+TGG | - | contig281end:6350-6369 | MsG0080048357.01.T01:CDS | 40.0% | |
| ACTGTTGAAGATCCACATTC+AGG | - | contig281end:4966-4985 | MsG0080048357.01.T01:exon | 40.0% | |
| ATCATCACTTCACTCCAACA+AGG | - | contig281end:6514-6533 | MsG0080048357.01.T01:intron | 40.0% | |
| CAACTTACTTGCAAGTTCCA+GGG | + | contig281end:5516-5535 | MsG0080048357.01.T01:intergenic | 40.0% | |
| CTAACTTGGTCAGTTGTGTA+AGG | + | contig281end:6482-6501 | MsG0080048357.01.T01:intergenic | 40.0% | |
| CTTACACAACTGACCAAGTT+AGG | - | contig281end:6480-6499 | MsG0080048357.01.T01:intron | 40.0% | |
| CTTTCCAACACAAGAACTGA+TGG | - | contig281end:6392-6411 | MsG0080048357.01.T01:CDS | 40.0% | |
| GAATATCCACATCCAGTTGA+AGG | + | contig281end:5277-5296 | MsG0080048357.01.T01:intergenic | 40.0% | |
| GATGAAGGATTTCCTGAATG+TGG | + | contig281end:4981-5000 | MsG0080048357.01.T01:intergenic | 40.0% | |
| GGAAATATGGGAAATGCCTT+TGG | - | contig281end:6320-6339 | MsG0080048357.01.T01:CDS | 40.0% | |
| GGACTCATCCAGGAATAATA+TGG | - | contig281end:6279-6298 | MsG0080048357.01.T01:CDS | 40.0% | |
| TCTATTGGTGTAGATGGAGA+TGG | + | contig281end:5439-5458 | MsG0080048357.01.T01:intergenic | 40.0% | |
| TGAATGTGGATCTTCAACAG+TGG | + | contig281end:4967-4986 | MsG0080048357.01.T01:intergenic | 40.0% | |
| TGCTTCATTTCTCAACTCCT+TGG | - | contig281end:6442-6461 | MsG0080048357.01.T01:intron | 40.0% | |
| TGGAATAAGAGAAGTGAGTG+AGG | + | contig281end:4827-4846 | MsG0080048357.01.T01:intergenic | 40.0% | |
| TGGAATATTAGTCACCCCAA+AGG | + | contig281end:6339-6358 | MsG0080048357.01.T01:intergenic | 40.0% | |
| TTGCTGCGAAGAAAATGTGA+TGG | + | contig281end:4847-4866 | MsG0080048357.01.T01:intergenic | 40.0% | |
| TTGGGGTGACTAATATTCCA+GGG | - | contig281end:6339-6358 | MsG0080048357.01.T01:CDS | 40.0% | |
| ! | AAGCACTGTGAACATGGAAA+AGG | + | contig281end:4901-4920 | MsG0080048357.01.T01:intergenic | 40.0% |
| ! | ATGGTGTTGAAGGAGTAGAA+GGG | + | contig281end:5312-5331 | MsG0080048357.01.T01:intergenic | 40.0% |
| ! | GGATTATGTGATGGTGTTGA+AGG | + | contig281end:5322-5341 | MsG0080048357.01.T01:intergenic | 40.0% |
| ! | TTTGGGGTGACTAATATTCC+AGG | - | contig281end:6338-6357 | MsG0080048357.01.T01:CDS | 40.0% |
| !! | ACAAGCTCACCTTTTCAAGA+TGG | - | contig281end:6547-6566 | MsG0080048357.01.T01:intron | 40.0% |
| !! | ATGGAGAAGTACTCCTATGT+GGG | + | contig281end:5177-5196 | MsG0080048357.01.T01:intergenic | 40.0% |
| !! | GAAGGTGTTGGATTATGTGA+TGG | + | contig281end:5331-5350 | MsG0080048357.01.T01:intergenic | 40.0% |
| !! | TTTGATGGTGTTGAAGGTGT+TGG | + | contig281end:5343-5362 | MsG0080048357.01.T01:intergenic | 40.0% |
| AAAGGTGGTGTAGGAACAGT+AGG | + | contig281end:5472-5491 | None:intergenic | 45.0% | |
| AACATAATGCAGGCCCACAT+AGG | - | contig281end:5161-5180 | MsG0080048357.01.T01:CDS | 45.0% | |
| AGTATCCACCACTTGATGGA+GGG | + | contig281end:5366-5385 | MsG0080048357.01.T01:intergenic | 45.0% | |
| ATGCAAACCTGTCCCTAACT+TGG | + | contig281end:6496-6515 | MsG0080048357.01.T01:intergenic | 45.0% | |
| ATTGGTGTAGATGGAGATGG+TGG | + | contig281end:5436-5455 | MsG0080048357.01.T01:intergenic | 45.0% | |
| CAGTTGTGTAAGGGAACTTG+TGG | + | contig281end:6472-6491 | MsG0080048357.01.T01:intergenic | 45.0% | |
| CCAGGATCTATTGGTGTAGA+TGG | + | contig281end:5445-5464 | MsG0080048357.01.T01:intergenic | 45.0% | |
| CCATCTACACCAATAGATCC+TGG | - | contig281end:5442-5461 | MsG0080048357.01.T01:intron | 45.0% | |
| GCAACTTACTTGCAAGTTCC+AGG | + | contig281end:5517-5536 | MsG0080048357.01.T01:intergenic | 45.0% | |
| TACTTGCAAGTTCCAGGGAA+GGG | + | contig281end:5511-5530 | MsG0080048357.01.T01:intergenic | 45.0% | |
| TAGTATCCACCACTTGATGG+AGG | + | contig281end:5367-5386 | MsG0080048357.01.T01:intergenic | 45.0% | |
| TATCCACATCCAGTTGAAGG+TGG | + | contig281end:5274-5293 | MsG0080048357.01.T01:intergenic | 45.0% | |
| TTACTTGCAAGTTCCAGGGA+AGG | + | contig281end:5512-5531 | MsG0080048357.01.T01:intergenic | 45.0% | |
| ! | AAAGTGACTGGTGGATCAGT+TGG | + | contig281end:5409-5428 | MsG0080048357.01.T01:intergenic | 45.0% |
| ! | CTGTGATTTTCAGCTACTGG+AGG | - | contig281end:6258-6277 | MsG0080048357.01.T01:CDS | 45.0% |
| ! | GATGGTGTTGAAGGAGTAGA+AGG | + | contig281end:5313-5332 | MsG0080048357.01.T01:intergenic | 45.0% |
| ! | TATGGGGAATTCTAGGTTGG+TGG | - | contig281end:6297-6316 | MsG0080048357.01.T01:CDS | 45.0% |
| ! | TGCAACAAGCACTGTGAACA+TGG | + | contig281end:4907-4926 | MsG0080048357.01.T01:intergenic | 45.0% |
| ! | TTTTGTAGTGGTGTGGAGTG+AGG | + | contig281end:4801-4820 | MsG0080048357.01.T01:intergenic | 45.0% |
| !! | AGGAGTACTTCTCCATCTCA+TGG | - | contig281end:5181-5200 | MsG0080048357.01.T01:CDS | 45.0% |
| !! | ATGGGGAATTCTAGGTTGGT+GGG | - | contig281end:6298-6317 | MsG0080048357.01.T01:CDS | 45.0% |
| !! | CTAGGTTGGTGGGGAAATAT+GGG | - | contig281end:6308-6327 | MsG0080048357.01.T01:CDS | 45.0% |
| !! | CTTGTGTTGGAAAGTGCTTG+TGG | + | contig281end:6386-6405 | MsG0080048357.01.T01:intergenic | 45.0% |
| !! | GATGGAGAAGTACTCCTATG+TGG | + | contig281end:5178-5197 | MsG0080048357.01.T01:intergenic | 45.0% |
| !! | GTTGGAAAGTGCTTGTGGTA+AGG | + | contig281end:6381-6400 | MsG0080048357.01.T01:intergenic | 45.0% |
| !! | TCTAGGTTGGTGGGGAAATA+TGG | - | contig281end:6307-6326 | MsG0080048357.01.T01:CDS | 45.0% |
| !! | TGAGTGAGGAGGTTTTGTAG+TGG | + | contig281end:4813-4832 | MsG0080048357.01.T01:intergenic | 45.0% |
| !! | TTAGGAGCACTCTACAGAGA+AGG | - | contig281end:6416-6435 | MsG0080048357.01.T01:intron | 45.0% |
| AAGTTCCAGGGAAGGGAGAT+GGG | + | contig281end:5504-5523 | MsG0080048357.01.T01:intergenic | 50.0% | |
| ACACCACCTTCAACTGGATG+TGG | - | contig281end:5268-5287 | MsG0080048357.01.T01:CDS | 50.0% | |
| ACTCCAACACCACCTTCAAC+TGG | - | contig281end:5262-5281 | MsG0080048357.01.T01:CDS | 50.0% | |
| AGCTCATCACCACCATCACA+TGG | - | contig281end:5226-5245 | MsG0080048357.01.T01:CDS | 50.0% | |
| AGGGAACTTGTGGTTCACCA+AGG | + | contig281end:6462-6481 | MsG0080048357.01.T01:intergenic | 50.0% | |
| CAACTGACCAAGTTAGGGAC+AGG | - | contig281end:6486-6505 | MsG0080048357.01.T01:intron | 50.0% | |
| CATCCAGTTGAAGGTGGTGT+TGG | + | contig281end:5268-5287 | MsG0080048357.01.T01:intergenic | 50.0% | |
| CCACTTGATGGAGGGTTTGA+TGG | + | contig281end:5358-5377 | MsG0080048357.01.T01:intergenic | 50.0% | |
| CCATCAAACCCTCCATCAAG+TGG | - | contig281end:5355-5374 | MsG0080048357.01.T01:intron | 50.0% | |
| GAAGGAAGGAAAGGTGGTGT+AGG | + | contig281end:5481-5500 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GAAGGAGTAGAAGGGTCATG+TGG | + | contig281end:5304-5323 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GATGAGCTTCCATGTGAAGG+TGG | + | contig281end:5214-5233 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GCTTGTGGTAAGGTTAGACC+AGG | + | contig281end:6371-6390 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GGTGATGAGCTTCCATGTGA+AGG | + | contig281end:5217-5236 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GGTGGATCAGTTGGAGTTGA+TGG | + | contig281end:5400-5419 | MsG0080048357.01.T01:intergenic | 50.0% | |
| GTTAGACCAGGAGTAAACCC+TGG | + | contig281end:6359-6378 | MsG0080048357.01.T01:intergenic | 50.0% | |
| TAAGACCCTCCACCATGTGA+TGG | + | contig281end:5241-5260 | MsG0080048357.01.T01:intergenic | 50.0% | |
| TCAAACCCTCCATCAAGTGG+TGG | - | contig281end:5358-5377 | MsG0080048357.01.T01:intron | 50.0% | |
| TCATCACCACCATCACATGG+TGG | - | contig281end:5229-5248 | MsG0080048357.01.T01:CDS | 50.0% | |
| ! | GATGGTGGTGTCAAAGTGAC+TGG | + | contig281end:5421-5440 | MsG0080048357.01.T01:intergenic | 50.0% |
| ! | TTGTGTTGCAGCAGCCTTGT+TGG | + | contig281end:6531-6550 | MsG0080048357.01.T01:intergenic | 50.0% |
| !! | GAGGAGGTTTTGTAGTGGTG+TGG | + | contig281end:4808-4827 | MsG0080048357.01.T01:intergenic | 50.0% |
| !! | GGAGGGTTTGATGGTGTTGA+AGG | + | contig281end:5349-5368 | MsG0080048357.01.T01:intergenic | 50.0% |
| !! | GGATCAGTTGGAGTTGATGG+TGG | + | contig281end:5397-5416 | MsG0080048357.01.T01:intergenic | 50.0% |
| !! | GTAGGAGTGCCAGGATCTAT+TGG | + | contig281end:5454-5473 | MsG0080048357.01.T01:intergenic | 50.0% |
| !! | TGGGGAATTCTAGGTTGGTG+GGG | - | contig281end:6299-6318 | MsG0080048357.01.T01:CDS | 50.0% |
| AGCTACTGGAGGACTCATCC+AGG | - | contig281end:6269-6288 | MsG0080048357.01.T01:CDS | 55.0% | |
| AGTTCCAGGGAAGGGAGATG+GGG | + | contig281end:5503-5522 | MsG0080048357.01.T01:intergenic | 55.0% | |
| CAAGTTCCAGGGAAGGGAGA+TGG | + | contig281end:5505-5524 | MsG0080048357.01.T01:intergenic | 55.0% | |
| GATGGGGAAGGAAGGAAAGG+TGG | + | contig281end:5487-5506 | MsG0080048357.01.T01:intergenic | 55.0% | |
| GGAAGCTCACCACCTTCACA+TGG | - | contig281end:5202-5221 | MsG0080048357.01.T01:CDS | 55.0% | |
| GGAGATGGGGAAGGAAGGAA+AGG | + | contig281end:5490-5509 | MsG0080048357.01.T01:intergenic | 55.0% | |
| GGAGTAGAAGGGTCATGTGG+TGG | + | contig281end:5301-5320 | MsG0080048357.01.T01:intergenic | 55.0% | |
| GGTGGTGAGCTTCCATGAGA+TGG | + | contig281end:5196-5215 | MsG0080048357.01.T01:intergenic | 55.0% | |
| TCACCACCATCACATGGTGG+AGG | - | contig281end:5232-5251 | MsG0080048357.01.T01:CDS | 55.0% | |
| ! | CACCACCATCACATGGTGGA+GGG | - | contig281end:5233-5252 | MsG0080048357.01.T01:CDS | 55.0% |
| ! | GGTGGTGTCAAAGTGACTGG+TGG | + | contig281end:5418-5437 | MsG0080048357.01.T01:intergenic | 55.0% |
| !! | GTAGGAACAGTAGGAGTGCC+AGG | + | contig281end:5463-5482 | MsG0080048357.01.T01:intergenic | 55.0% |
| GACCCTCCACCATGTGATGG+TGG | + | contig281end:5238-5257 | MsG0080048357.01.T01:intergenic | 60.0% | |
| GGAAGGGAGATGGGGAAGGA+AGG | + | contig281end:5495-5514 | MsG0080048357.01.T01:intergenic | 60.0% | |
| CCAGGGAAGGGAGATGGGGA+AGG | + | contig281end:5499-5518 | MsG0080048357.01.T01:intergenic | 65.0% | |
| CCTTCCCCATCTCCCTTCCC+TGG | - | contig281end:5496-5515 | MsG0080048357.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig281end | gene | 4797 | 6787 | 4797 | ID=MsG0080048357.01;Name=MsG0080048357.01 |
| contig281end | mRNA | 4797 | 6787 | 4797 | ID=MsG0080048357.01.T01;Parent=MsG0080048357.01;Name=MsG0080048357.01.T01;_AED=0.23;_eAED=0.23;_QI=76|1|1|1|1|1|3|186|277 |
| contig281end | exon | 6564 | 6787 | 6564 | ID=MsG0080048357.01.T01:exon:16400;Parent=MsG0080048357.01.T01 |
| contig281end | exon | 6057 | 6411 | 6057 | ID=MsG0080048357.01.T01:exon:16401;Parent=MsG0080048357.01.T01 |
| contig281end | exon | 4797 | 5313 | 4797 | ID=MsG0080048357.01.T01:exon:16402;Parent=MsG0080048357.01.T01 |
| contig281end | five_prime_UTR | 6712 | 6787 | 6712 | ID=MsG0080048357.01.T01:five_prime_utr;Parent=MsG0080048357.01.T01 |
| contig281end | CDS | 6564 | 6711 | 6564 | ID=MsG0080048357.01.T01:cds;Parent=MsG0080048357.01.T01 |
| contig281end | CDS | 6057 | 6411 | 6057 | ID=MsG0080048357.01.T01:cds;Parent=MsG0080048357.01.T01 |
| contig281end | CDS | 4983 | 5313 | 4983 | ID=MsG0080048357.01.T01:cds;Parent=MsG0080048357.01.T01 |
| contig281end | three_prime_UTR | 4797 | 4982 | 4797 | ID=MsG0080048357.01.T01:three_prime_utr;Parent=MsG0080048357.01.T01 |
| Gene Sequence |
| Protein sequence |
