AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044171.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044171.01.T01 MTR_8g442410 94.776 536 28 0 6 541 1 536 0.0 1038
MsG0880044171.01.T01 MTR_4g104020 47.135 384 190 7 154 530 143 520 1.38e-103 321
MsG0880044171.01.T01 MTR_7g027190 42.065 397 193 6 154 530 294 673 7.62e-95 303
MsG0880044171.01.T01 MTR_3g065980 35.427 398 215 11 154 531 166 541 1.07e-75 249
MsG0880044171.01.T01 MTR_5g094450 34.884 387 229 7 156 530 157 532 2.39e-67 227
MsG0880044171.01.T01 MTR_3g089055 34.392 378 229 6 161 530 204 570 4.73e-65 222
MsG0880044171.01.T01 MTR_3g089055 34.392 378 229 6 161 530 199 565 4.78e-65 221
MsG0880044171.01.T01 MTR_5g097480 34.026 385 231 8 156 530 173 544 6.20e-65 221
MsG0880044171.01.T01 MTR_2g082090 36.317 391 214 9 156 530 208 579 1.03e-64 221
MsG0880044171.01.T01 MTR_3g056110 33.333 384 235 7 156 530 171 542 1.61e-64 219
MsG0880044171.01.T01 MTR_4g076140 32.506 443 220 11 153 530 41 469 2.55e-64 217
MsG0880044171.01.T01 MTR_1g029420 34.127 378 230 6 161 530 226 592 4.61e-63 217
MsG0880044171.01.T01 MTR_5g009080 30.717 446 227 11 153 531 49 479 2.35e-62 212
MsG0880044171.01.T01 MTR_4g064150 30.496 423 258 9 128 532 331 735 2.91e-59 209
MsG0880044171.01.T01 MTR_4g133660 33.419 389 229 8 155 529 170 542 8.48e-59 204
MsG0880044171.01.T01 MTR_7g074650 36.043 369 216 8 164 530 442 792 9.01e-59 209
MsG0880044171.01.T01 MTR_4g102790 33.247 388 239 11 152 529 284 661 1.78e-58 206
MsG0880044171.01.T01 MTR_4g064160 31.061 396 248 8 148 529 299 683 7.88e-58 204
MsG0880044171.01.T01 MTR_4g064120 32.821 390 235 10 152 527 246 622 7.28e-57 201
MsG0880044171.01.T01 MTR_4g064180 30.913 427 273 9 114 527 205 622 1.29e-56 200
MsG0880044171.01.T01 MTR_4g064200 31.510 384 241 7 155 529 279 649 6.36e-54 193
MsG0880044171.01.T01 MTR_2g097410 29.581 453 291 7 85 529 308 740 7.76e-54 194
MsG0880044171.01.T01 MTR_4g076020 35.526 380 211 11 164 538 88 438 1.81e-53 187
MsG0880044171.01.T01 MTR_2g097467 29.948 384 248 6 154 529 283 653 1.42e-52 189
MsG0880044171.01.T01 MTR_2g097310 28.676 408 266 10 134 532 249 640 5.44e-52 187
MsG0880044171.01.T01 MTR_2g097463 30.287 383 246 6 155 529 285 654 1.45e-51 187
MsG0880044171.01.T01 MTR_2g097473 27.918 437 288 7 107 529 230 653 8.21e-51 185
MsG0880044171.01.T01 MTR_2g097390 29.949 394 234 10 155 529 270 640 1.38e-50 184
MsG0880044171.01.T01 MTR_2g097350 30.127 395 232 12 155 529 269 639 5.28e-50 182
MsG0880044171.01.T01 MTR_7g062120 29.648 398 260 6 144 532 356 742 1.08e-49 183
MsG0880044171.01.T01 MTR_1g069725 33.590 390 219 11 152 529 101 462 1.27e-49 178
MsG0880044171.01.T01 MTR_2g026250 30.130 385 249 7 155 530 223 596 5.49e-49 179
MsG0880044171.01.T01 MTR_2g097380 28.184 369 224 8 165 529 229 560 3.56e-45 167
MsG0880044171.01.T01 MTR_2g034250 31.105 389 251 10 153 530 203 585 8.63e-45 167
MsG0880044171.01.T01 MTR_3g022830 28.738 428 230 11 161 530 26 436 9.45e-45 164
MsG0880044171.01.T01 MTR_2g034280 31.472 394 240 11 153 530 196 575 1.38e-44 166
MsG0880044171.01.T01 MTR_3g072710 32.353 408 234 13 152 533 112 503 2.11e-44 164
MsG0880044171.01.T01 MTR_5g015490 28.534 382 255 7 161 530 115 490 1.42e-42 159
MsG0880044171.01.T01 MTR_5g058860 31.188 404 240 13 153 533 112 500 2.94e-42 158
MsG0880044171.01.T01 MTR_4g097080 28.684 380 251 11 161 530 134 503 4.74e-41 155
MsG0880044171.01.T01 MTR_2g034260 29.825 399 242 11 153 530 203 584 2.80e-40 154
MsG0880044171.01.T01 MTR_7g057230 31.065 338 210 7 200 529 334 656 1.08e-38 150
MsG0880044171.01.T01 MTR_1g086970 28.155 412 258 13 139 530 85 478 1.50e-37 145
MsG0880044171.01.T01 MTR_1g096030 28.706 425 242 17 141 530 61 459 2.43e-37 144
MsG0880044171.01.T01 MTR_4g077760 28.571 385 245 10 157 530 190 555 5.36e-33 133
MsG0880044171.01.T01 MTR_4g095500 26.923 416 249 11 161 529 60 467 9.81e-33 131
MsG0880044171.01.T01 MTR_6g047750 29.457 387 240 12 159 530 294 662 9.96e-33 133
MsG0880044171.01.T01 MTR_2g089100 27.685 419 254 9 146 529 38 442 1.59e-32 130
MsG0880044171.01.T01 MTR_2g099110 28.462 390 246 10 161 530 75 451 9.24e-32 128
MsG0880044171.01.T01 MTR_5g015950 26.777 422 244 16 161 529 36 445 1.26e-30 124
MsG0880044171.01.T01 MTR_3g053270 26.777 422 244 16 161 529 36 445 1.26e-30 124
MsG0880044171.01.T01 MTR_7g109580 26.463 393 256 13 152 530 181 554 6.44e-27 115
MsG0880044171.01.T01 MTR_8g093070 26.329 395 256 13 157 540 136 506 1.15e-25 110
MsG0880044171.01.T01 MTR_0092s0100 24.870 386 252 10 157 530 372 731 1.52e-22 102
MsG0880044171.01.T01 MTR_0092s0100 24.870 386 252 10 157 530 369 728 1.83e-22 102
MsG0880044171.01.T01 MTR_4g026485 23.426 397 261 12 147 530 258 624 1.05e-18 90.1
MsG0880044171.01.T01 MTR_8g020840 22.613 398 261 13 161 531 172 549 1.14e-15 80.5
MsG0880044171.01.T01 MTR_3g022580 35.385 130 74 4 409 530 56 183 1.30e-15 75.5
MsG0880044171.01.T01 MTR_8g077940 23.724 392 254 15 156 530 178 541 3.13e-15 79.0
MsG0880044171.01.T01 MTR_3g022005 37.634 93 55 2 440 530 34 125 9.78e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044171.01.T01 AT1G66350 38.120 383 208 11 154 531 149 507 7.01e-77 251
MsG0880044171.01.T01 AT3G03450 37.403 385 221 10 154 532 177 547 2.49e-75 248
MsG0880044171.01.T01 AT1G14920 37.726 387 214 11 154 533 166 532 1.20e-72 241
MsG0880044171.01.T01 AT2G01570 36.154 390 222 11 154 536 218 587 1.53e-71 239
MsG0880044171.01.T01 AT5G17490 33.766 385 231 8 154 533 154 519 1.18e-66 225
MsG0880044171.01.T01 AT2G04890 34.375 384 224 7 156 530 49 413 4.54e-64 215
MsG0880044171.01.T01 AT3G54220 37.736 371 208 8 164 529 297 649 2.69e-62 216
MsG0880044171.01.T01 AT5G48150 33.159 383 238 6 156 530 118 490 5.49e-62 211
MsG0880044171.01.T01 AT5G48150 33.159 383 238 6 156 530 118 490 5.49e-62 211
MsG0880044171.01.T01 AT5G48150 33.159 383 238 6 156 530 118 490 5.49e-62 211
MsG0880044171.01.T01 AT5G48150 33.159 383 238 6 156 530 118 490 5.49e-62 211
MsG0880044171.01.T01 AT1G50420 31.136 440 231 8 153 530 50 479 1.13e-60 208
MsG0880044171.01.T01 AT1G50600 33.594 384 234 7 156 530 155 526 1.55e-60 209
MsG0880044171.01.T01 AT1G21450 32.895 380 237 5 159 530 224 593 4.30e-60 209
MsG0880044171.01.T01 AT1G50600 33.594 384 234 7 156 530 226 597 7.35e-60 208
MsG0880044171.01.T01 AT1G50600 33.594 384 234 7 156 530 230 601 1.05e-59 208
MsG0880044171.01.T01 AT5G41920 35.356 379 226 9 155 530 38 400 3.55e-59 202
MsG0880044171.01.T01 AT1G07530 30.928 388 247 7 156 533 392 768 2.72e-57 204
MsG0880044171.01.T01 AT4G17230 33.756 394 234 8 149 530 147 525 1.33e-54 192
MsG0880044171.01.T01 AT4G17230 33.756 394 234 8 149 530 147 525 1.33e-54 192
MsG0880044171.01.T01 AT2G29060 31.095 402 254 8 140 529 264 654 2.75e-53 192
MsG0880044171.01.T01 AT2G29060 31.095 402 254 7 140 529 301 691 4.03e-53 192
MsG0880044171.01.T01 AT2G29065 29.156 391 257 7 152 529 244 627 3.17e-51 186
MsG0880044171.01.T01 AT1G07520 27.074 458 292 9 85 529 100 528 1.43e-49 179
MsG0880044171.01.T01 AT1G07520 27.074 458 292 9 85 529 100 528 1.43e-49 179
MsG0880044171.01.T01 AT1G07520 28.900 391 257 7 152 529 311 693 6.54e-49 180
MsG0880044171.01.T01 AT1G07520 28.900 391 257 7 152 529 310 692 7.22e-49 180
MsG0880044171.01.T01 AT1G55580 32.447 376 217 10 189 530 73 445 1.31e-48 174
MsG0880044171.01.T01 AT5G59450 28.176 433 284 10 111 532 184 600 1.74e-48 177
MsG0880044171.01.T01 AT1G63100 31.285 358 230 7 151 503 243 589 1.79e-48 178
MsG0880044171.01.T01 AT1G63100 31.285 358 230 7 151 503 268 614 2.27e-48 178
MsG0880044171.01.T01 AT3G46600 29.008 393 252 8 152 532 204 581 7.87e-47 172
MsG0880044171.01.T01 AT3G46600 29.091 385 246 8 161 533 5 374 1.93e-46 167
MsG0880044171.01.T01 AT3G46600 29.008 393 252 8 152 532 172 549 2.65e-46 171
MsG0880044171.01.T01 AT2G37650 29.008 393 257 7 150 533 325 704 5.90e-46 172
MsG0880044171.01.T01 AT2G37650 29.008 393 257 7 150 533 337 716 6.80e-46 172
MsG0880044171.01.T01 AT4G37650 28.117 409 268 11 142 530 127 529 9.28e-43 160
MsG0880044171.01.T01 AT4G08250 29.668 391 249 14 152 529 99 476 2.04e-38 147
MsG0880044171.01.T01 AT5G66770 29.534 386 242 10 157 530 217 584 4.62e-38 148
MsG0880044171.01.T01 AT3G50650 29.888 358 218 9 188 530 203 542 1.14e-37 146
MsG0880044171.01.T01 AT5G52510 31.250 336 206 8 217 530 308 640 7.98e-37 145
MsG0880044171.01.T01 AT3G49950 28.212 397 237 15 161 529 31 407 3.87e-32 128
MsG0880044171.01.T01 AT3G60630 26.710 307 201 10 238 530 326 622 1.14e-21 99.4
MsG0880044171.01.T01 AT4G00150 27.762 353 221 11 186 533 234 557 5.27e-19 90.9
MsG0880044171.01.T01 AT4G36710 23.018 391 267 12 152 530 117 485 7.25e-18 87.0
MsG0880044171.01.T01 AT2G45160 25.532 423 249 17 140 530 251 639 3.25e-17 85.5
MsG0880044171.01.T01 AT3G13840 23.632 402 257 15 150 530 138 510 9.73e-16 80.5

Find 100 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATACACATAATTGATT+TGG 0.221010 8:+36889578 MsG0880044171.01.T01:CDS
ATCCTAATTGGACTATTTCT+TGG 0.252505 8:-36890065 None:intergenic
TTCCTTTCCAACCAAGTAAA+AGG 0.254662 8:-36890304 None:intergenic
TGATCTTGCTCCATTCTTGC+AGG 0.255135 8:-36888844 None:intergenic
CACAATGGACCTTTCTTTCT+TGG 0.260406 8:+36889981 MsG0880044171.01.T01:CDS
TTTGTTACTTGGTAAAATTT+TGG 0.264110 8:+36889296 MsG0880044171.01.T01:CDS
TTCAATGGCCTTCGCTAATA+AGG 0.276663 8:+36889616 MsG0880044171.01.T01:CDS
ACAACACCTTATATTACTTT+TGG 0.300835 8:+36889507 MsG0880044171.01.T01:CDS
GATCAATGGAGAAGACAATT+AGG 0.324260 8:+36890176 MsG0880044171.01.T01:CDS
TCATGTCTCTCCATTCTATC+AGG 0.340101 8:-36890146 None:intergenic
ATGATGTTTCTTTGATTACT+AGG 0.342089 8:+36889448 MsG0880044171.01.T01:CDS
GACACTTTCATTCATATAGA+AGG 0.344185 8:-36888791 None:intergenic
TTGGCTTTGTCAAGTCCTTC+AGG 0.354507 8:+36889315 MsG0880044171.01.T01:CDS
ATCGTTCATTTCAACTTCTT+CGG 0.360446 8:-36889154 None:intergenic
ATGAAACCAAAAGTAATATA+AGG 0.362911 8:-36889513 None:intergenic
CCTCCAAAGCTCAGGATAAC+AGG 0.367635 8:+36889663 MsG0880044171.01.T01:CDS
TCAATACACATAATTGATTT+GGG 0.373143 8:+36889579 MsG0880044171.01.T01:CDS
CCTGTTATCCTGAGCTTTGG+AGG 0.384703 8:-36889663 None:intergenic
GCAGGGCAAAACCTTCTGAT+AGG 0.390949 8:-36888826 None:intergenic
CTGAGCTTTGGAGGCCCCTC+AGG 0.392034 8:-36889654 None:intergenic
TGACTTGGTCCATACGCTAC+TGG 0.405114 8:+36889230 MsG0880044171.01.T01:CDS
TGCCAAGAAATAGTCCAATT+AGG 0.408355 8:+36890063 MsG0880044171.01.T01:CDS
ATATACATTGTCATGTGAAA+AGG 0.427162 8:+36890277 MsG0880044171.01.T01:CDS
TCTACAACTGTGAGTGCAAT+TGG 0.437872 8:-36889945 None:intergenic
AAGTAATATAAGGTGTTGTT+TGG 0.439313 8:-36889503 None:intergenic
AATCCTGTTATCCTGAGCTT+TGG 0.439914 8:-36889666 None:intergenic
AATCAGGCGAATTTGTTACT+TGG 0.447598 8:+36889285 MsG0880044171.01.T01:CDS
TGTAGAAGAAGCACTCTCAT+TGG 0.455081 8:+36889740 MsG0880044171.01.T01:CDS
GTTGAAATGAACGATACATT+TGG 0.458396 8:+36889162 MsG0880044171.01.T01:CDS
GACATGAAAGAGTAGATCAA+TGG 0.459154 8:+36890162 MsG0880044171.01.T01:CDS
ATGGACCTTTCTTTCTTGGT+AGG 0.464231 8:+36889985 MsG0880044171.01.T01:CDS
GCTATATGCCAAGGATCAAA+AGG 0.466005 8:+36889549 MsG0880044171.01.T01:CDS
CTATTTGAAAATACATTATG+TGG 0.466093 8:-36889402 None:intergenic
GTAGAAGAAGCACTCTCATT+GGG 0.466957 8:+36889741 MsG0880044171.01.T01:CDS
GAAAGGAAGGTCTATTATGA+TGG 0.467802 8:+36890319 MsG0880044171.01.T01:CDS
ACCTTCTGATAGGGAAATCA+AGG 0.468486 8:-36888816 None:intergenic
GATCTTGCTCCATTCTTGCA+GGG 0.471751 8:-36888843 None:intergenic
GTAAGAAGAGAAGGAGTTGC+CGG 0.477608 8:-36889795 None:intergenic
CTGGCTTGTGCCGAGGCCGT+TGG 0.479503 8:+36889249 MsG0880044171.01.T01:CDS
TGATGTTTCTTTGATTACTA+GGG 0.480820 8:+36889449 MsG0880044171.01.T01:CDS
TCTTCATCCTCCATTGTGGT+TGG 0.481380 8:-36889093 None:intergenic
GCCTTGGTTCATACCGAGAC+TGG 0.481981 8:-36889205 None:intergenic
GATTACTAGGGAGAATAAGT+TGG 0.489189 8:+36889461 MsG0880044171.01.T01:CDS
CATCATCAAGAACTGTCTCT+TGG 0.496418 8:-36888885 None:intergenic
TTGCCACAGCATTGAAGTGT+AGG 0.499786 8:+36889367 MsG0880044171.01.T01:CDS
GTCTCTGCAACCAACGGCCT+CGG 0.503923 8:-36889259 None:intergenic
AGAAGACAATTAGGAAGAGC+AGG 0.503981 8:+36890185 MsG0880044171.01.T01:CDS
CTGATATTATGTGAAATTCA+AGG 0.504774 8:-36889770 None:intergenic
TAATAAGGAACCTCGCTTCG+AGG 0.507019 8:+36889631 MsG0880044171.01.T01:CDS
CCGAGACTGGCTTGTGATTG+TGG 0.515572 8:-36889192 None:intergenic
GCCCCTCAGGCCTCGAAGCG+AGG 0.518387 8:-36889641 None:intergenic
CTTTCTGTTTATGATTGTGA+TGG 0.518538 8:+36890254 MsG0880044171.01.T01:CDS
CTATTATGATGGCTTCTGCT+TGG 0.519258 8:+36890330 MsG0880044171.01.T01:CDS
CGGCACAAGCCAGTAGCGTA+TGG 0.524974 8:-36889239 None:intergenic
CTGAGGGGCCTCCAAAGCTC+AGG 0.525835 8:+36889655 MsG0880044171.01.T01:CDS
AGCAATATTTGATTCTCTTG+AGG 0.528353 8:+36890034 MsG0880044171.01.T01:CDS
TATGGACCAAGTCAAGGCCT+TGG 0.530054 8:-36889221 None:intergenic
ACACATAATTGATTTGGGAA+TGG 0.530660 8:+36889584 MsG0880044171.01.T01:CDS
AAGTCATCAACTTCTGAAGA+AGG 0.531009 8:-36888952 None:intergenic
AGAAACCTACCAAGAAAGAA+AGG 0.532154 8:-36889990 None:intergenic
AACCTCGCTTCGAGGCCTGA+GGG 0.533889 8:+36889639 MsG0880044171.01.T01:CDS
TTGTAACATTGTAGCTTGTG+AGG 0.535866 8:+36890121 MsG0880044171.01.T01:CDS
ATTTCACATAATATCAGAGC+CGG 0.536819 8:+36889776 MsG0880044171.01.T01:CDS
ATTCACCTTCTCTCAAGTTG+AGG 0.536949 8:-36889827 None:intergenic
TTGTGAGGGTCCTGATAGAA+TGG 0.538774 8:+36890136 MsG0880044171.01.T01:CDS
TATACATTGTCATGTGAAAA+GGG 0.539789 8:+36890278 MsG0880044171.01.T01:CDS
ACCTTGATTTCCCTATCAGA+AGG 0.546601 8:+36888815 MsG0880044171.01.T01:CDS
CAAGAACTGTCTCTTGGTCA+TGG 0.547218 8:-36888879 None:intergenic
AAATTCTTCATCCTCCATTG+TGG 0.547730 8:-36889097 None:intergenic
CAATGCTGTGGCAAAGCAGT+AGG 0.548768 8:-36889358 None:intergenic
GAATGGAGCATACTCTTCAA+TGG 0.549472 8:+36889601 MsG0880044171.01.T01:CDS
CAGGGCAAAACCTTCTGATA+GGG 0.552869 8:-36888825 None:intergenic
TGTTGATAGCTTCATCAACA+TGG 0.554822 8:+36888975 MsG0880044171.01.T01:CDS
TGTAACATTGTAGCTTGTGA+GGG 0.555984 8:+36890122 MsG0880044171.01.T01:CDS
AGAAGGTAATAAACAAGGAC+TGG 0.559389 8:-36888935 None:intergenic
TACGCTACTGGCTTGTGCCG+AGG 0.566964 8:+36889242 MsG0880044171.01.T01:CDS
GAACCTCGCTTCGAGGCCTG+AGG 0.569227 8:+36889638 MsG0880044171.01.T01:CDS
TGGTTGCAGAGACAACAATC+AGG 0.574071 8:+36889269 MsG0880044171.01.T01:CDS
GCTTGACTTGTACACTTGAG+TGG 0.583171 8:-36890221 None:intergenic
GCGAGGTTCCTTATTAGCGA+AGG 0.586588 8:-36889624 None:intergenic
TATGAACCAAGGCCTTGACT+TGG 0.587577 8:+36889215 MsG0880044171.01.T01:CDS
CCACAATCACAAGCCAGTCT+CGG 0.590657 8:+36889192 MsG0880044171.01.T01:CDS
ACCTCGCTTCGAGGCCTGAG+GGG 0.592685 8:+36889640 MsG0880044171.01.T01:CDS
GAAAACCTCAACTTGAGAGA+AGG 0.599776 8:+36889822 MsG0880044171.01.T01:CDS
GATGGCTTCTGCTTGGCAAG+TGG 0.608972 8:+36890337 MsG0880044171.01.T01:CDS
TGAAAATACAACAATCACAA+TGG 0.613615 8:+36889128 MsG0880044171.01.T01:CDS
GCAAATGAAGCTATATGCCA+AGG 0.622841 8:+36889540 MsG0880044171.01.T01:CDS
CAATGGAAGACTTAAACATG+TGG 0.631529 8:+36888764 None:intergenic
ATTGTTGTCTCTGCAACCAA+CGG 0.634384 8:-36889265 None:intergenic
GCCAGTCTCGGTATGAACCA+AGG 0.638041 8:+36889204 MsG0880044171.01.T01:CDS
GTAGCGTATGGACCAAGTCA+AGG 0.641162 8:-36889227 None:intergenic
CTTTGTAACGAATCTCCTGA+AGG 0.642692 8:-36889330 None:intergenic
TAACCTACACTTCAATGCTG+TGG 0.647062 8:-36889370 None:intergenic
TGAATATGATCCAACCACAA+TGG 0.666133 8:+36889083 MsG0880044171.01.T01:CDS
CAAGAAAGAAAGGTCCATTG+TGG 0.670675 8:-36889980 None:intergenic
AGAATGGAGCAAGATCAAGA+AGG 0.671700 8:+36888850 MsG0880044171.01.T01:CDS
ATATGATCCAACCACAATGG+AGG 0.673525 8:+36889086 MsG0880044171.01.T01:CDS
AAATATGTGAAAGAAAGTAG+AGG 0.675405 8:+36889882 MsG0880044171.01.T01:CDS
TCTGAAGAAGGTAATAAACA+AGG 0.680577 8:-36888940 None:intergenic
GAGCAAGATACAAACCACAA+TGG 0.698995 8:+36889966 MsG0880044171.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAACCAAAAGTAATATA+AGG - Chr8:36889516-36889535 None:intergenic 20.0%
!! CTATTTGAAAATACATTATG+TGG - Chr8:36889405-36889424 None:intergenic 20.0%
!!! TCAATACACATAATTGATTT+GGG + Chr8:36889579-36889598 MsG0880044171.01.T01:CDS 20.0%
!!! TTATATTACTTTTGGTTTCA+TGG + Chr8:36889515-36889534 MsG0880044171.01.T01:CDS 20.0%
!!! TTTGTTACTTGGTAAAATTT+TGG + Chr8:36889296-36889315 MsG0880044171.01.T01:CDS 20.0%
! AAATATGTGAAAGAAAGTAG+AGG + Chr8:36889882-36889901 MsG0880044171.01.T01:CDS 25.0%
! ATATACATTGTCATGTGAAA+AGG + Chr8:36890277-36890296 MsG0880044171.01.T01:CDS 25.0%
! ATGATGTTTCTTTGATTACT+AGG + Chr8:36889448-36889467 MsG0880044171.01.T01:CDS 25.0%
! CTCAATACACATAATTGATT+TGG + Chr8:36889578-36889597 MsG0880044171.01.T01:CDS 25.0%
! CTGATATTATGTGAAATTCA+AGG - Chr8:36889773-36889792 None:intergenic 25.0%
! TATACATTGTCATGTGAAAA+GGG + Chr8:36890278-36890297 MsG0880044171.01.T01:CDS 25.0%
! TGAAAATACAACAATCACAA+TGG + Chr8:36889128-36889147 MsG0880044171.01.T01:CDS 25.0%
! TGATGTTTCTTTGATTACTA+GGG + Chr8:36889449-36889468 MsG0880044171.01.T01:CDS 25.0%
!! ACAACACCTTATATTACTTT+TGG + Chr8:36889507-36889526 MsG0880044171.01.T01:CDS 25.0%
!!! AAGTAATATAAGGTGTTGTT+TGG - Chr8:36889506-36889525 None:intergenic 25.0%
!!! AAGTTTTGATCATCACTTTT+TGG + Chr8:36889044-36889063 MsG0880044171.01.T01:CDS 25.0%
AGCAATATTTGATTCTCTTG+AGG + Chr8:36890034-36890053 MsG0880044171.01.T01:CDS 30.0%
ATCGTTCATTTCAACTTCTT+CGG - Chr8:36889157-36889176 None:intergenic 30.0%
ATTTCACATAATATCAGAGC+CGG + Chr8:36889776-36889795 MsG0880044171.01.T01:CDS 30.0%
CTTTCTGTTTATGATTGTGA+TGG + Chr8:36890254-36890273 MsG0880044171.01.T01:CDS 30.0%
GACACTTTCATTCATATAGA+AGG - Chr8:36888794-36888813 None:intergenic 30.0%
GTTGAAATGAACGATACATT+TGG + Chr8:36889162-36889181 MsG0880044171.01.T01:CDS 30.0%
TCTGAAGAAGGTAATAAACA+AGG - Chr8:36888943-36888962 None:intergenic 30.0%
! ATCCTAATTGGACTATTTCT+TGG - Chr8:36890068-36890087 None:intergenic 30.0%
! CTCTCTATTTTCATCCTAAT+TGG - Chr8:36890080-36890099 None:intergenic 30.0%
! TTTTCGATTGTAAGAAGAGA+AGG - Chr8:36889807-36889826 None:intergenic 30.0%
!! ACACATAATTGATTTGGGAA+TGG + Chr8:36889584-36889603 MsG0880044171.01.T01:CDS 30.0%
AAATTCTTCATCCTCCATTG+TGG - Chr8:36889100-36889119 None:intergenic 35.0%
AGAAACCTACCAAGAAAGAA+AGG - Chr8:36889993-36890012 None:intergenic 35.0%
AGAAGGTAATAAACAAGGAC+TGG - Chr8:36888938-36888957 None:intergenic 35.0%
GAAAGGAAGGTCTATTATGA+TGG + Chr8:36890319-36890338 MsG0880044171.01.T01:CDS 35.0%
GACATGAAAGAGTAGATCAA+TGG + Chr8:36890162-36890181 MsG0880044171.01.T01:CDS 35.0%
GATCAATGGAGAAGACAATT+AGG + Chr8:36890176-36890195 MsG0880044171.01.T01:CDS 35.0%
GATTACTAGGGAGAATAAGT+TGG + Chr8:36889461-36889480 MsG0880044171.01.T01:CDS 35.0%
TGAATATGATCCAACCACAA+TGG + Chr8:36889083-36889102 MsG0880044171.01.T01:CDS 35.0%
TGCCAAGAAATAGTCCAATT+AGG + Chr8:36890063-36890082 MsG0880044171.01.T01:CDS 35.0%
TTCCTTTCCAACCAAGTAAA+AGG - Chr8:36890307-36890326 None:intergenic 35.0%
! AAGTCATCAACTTCTGAAGA+AGG - Chr8:36888955-36888974 None:intergenic 35.0%
! TGTAACATTGTAGCTTGTGA+GGG + Chr8:36890122-36890141 MsG0880044171.01.T01:CDS 35.0%
! TTGTAACATTGTAGCTTGTG+AGG + Chr8:36890121-36890140 MsG0880044171.01.T01:CDS 35.0%
! TTTTACTTGGTTGGAAAGGA+AGG + Chr8:36890306-36890325 MsG0880044171.01.T01:CDS 35.0%
!! AATCAGGCGAATTTGTTACT+TGG + Chr8:36889285-36889304 MsG0880044171.01.T01:CDS 35.0%
!! AGCTTTTTCCTTTTGATCCT+TGG - Chr8:36889560-36889579 None:intergenic 35.0%
!! TGTTGATAGCTTCATCAACA+TGG + Chr8:36888975-36888994 MsG0880044171.01.T01:CDS 35.0%
AATCCTGTTATCCTGAGCTT+TGG - Chr8:36889669-36889688 None:intergenic 40.0%
ACCTTCTGATAGGGAAATCA+AGG - Chr8:36888819-36888838 None:intergenic 40.0%
ACCTTGATTTCCCTATCAGA+AGG + Chr8:36888815-36888834 MsG0880044171.01.T01:CDS 40.0%
AGAAGACAATTAGGAAGAGC+AGG + Chr8:36890185-36890204 MsG0880044171.01.T01:CDS 40.0%
AGAATGGAGCAAGATCAAGA+AGG + Chr8:36888850-36888869 MsG0880044171.01.T01:CDS 40.0%
ATATGATCCAACCACAATGG+AGG + Chr8:36889086-36889105 MsG0880044171.01.T01:CDS 40.0%
ATGGACCTTTCTTTCTTGGT+AGG + Chr8:36889985-36890004 MsG0880044171.01.T01:CDS 40.0%
ATTGTTGTCTCTGCAACCAA+CGG - Chr8:36889268-36889287 None:intergenic 40.0%
CAAGAAAGAAAGGTCCATTG+TGG - Chr8:36889983-36890002 None:intergenic 40.0%
CACAATGGACCTTTCTTTCT+TGG + Chr8:36889981-36890000 MsG0880044171.01.T01:CDS 40.0%
CATCATCAAGAACTGTCTCT+TGG - Chr8:36888888-36888907 None:intergenic 40.0%
CTATTATGATGGCTTCTGCT+TGG + Chr8:36890330-36890349 MsG0880044171.01.T01:CDS 40.0%
CTTTGTAACGAATCTCCTGA+AGG - Chr8:36889333-36889352 None:intergenic 40.0%
GAAAACCTCAACTTGAGAGA+AGG + Chr8:36889822-36889841 MsG0880044171.01.T01:CDS 40.0%
GAATGGAGCATACTCTTCAA+TGG + Chr8:36889601-36889620 MsG0880044171.01.T01:CDS 40.0%
GAGCAAGATACAAACCACAA+TGG + Chr8:36889966-36889985 MsG0880044171.01.T01:CDS 40.0%
GCAAATGAAGCTATATGCCA+AGG + Chr8:36889540-36889559 MsG0880044171.01.T01:CDS 40.0%
GCTATATGCCAAGGATCAAA+AGG + Chr8:36889549-36889568 MsG0880044171.01.T01:CDS 40.0%
TAACCTACACTTCAATGCTG+TGG - Chr8:36889373-36889392 None:intergenic 40.0%
TCATGTCTCTCCATTCTATC+AGG - Chr8:36890149-36890168 None:intergenic 40.0%
TCTACAACTGTGAGTGCAAT+TGG - Chr8:36889948-36889967 None:intergenic 40.0%
TTCAATGGCCTTCGCTAATA+AGG + Chr8:36889616-36889635 MsG0880044171.01.T01:CDS 40.0%
! ATTCACCTTCTCTCAAGTTG+AGG - Chr8:36889830-36889849 None:intergenic 40.0%
! GAAAAGGGTTGCCTTTTACT+TGG + Chr8:36890293-36890312 MsG0880044171.01.T01:CDS 40.0%
! TGCCTTTTACTTGGTTGGAA+AGG + Chr8:36890302-36890321 MsG0880044171.01.T01:CDS 40.0%
!! GTAGAAGAAGCACTCTCATT+GGG + Chr8:36889741-36889760 MsG0880044171.01.T01:CDS 40.0%
!! TGTAGAAGAAGCACTCTCAT+TGG + Chr8:36889740-36889759 MsG0880044171.01.T01:CDS 40.0%
CAAGAACTGTCTCTTGGTCA+TGG - Chr8:36888882-36888901 None:intergenic 45.0%
CAGGGCAAAACCTTCTGATA+GGG - Chr8:36888828-36888847 None:intergenic 45.0%
GATCTTGCTCCATTCTTGCA+GGG - Chr8:36888846-36888865 None:intergenic 45.0%
GTAAGAAGAGAAGGAGTTGC+CGG - Chr8:36889798-36889817 None:intergenic 45.0%
TAATAAGGAACCTCGCTTCG+AGG + Chr8:36889631-36889650 MsG0880044171.01.T01:CDS 45.0%
TATGAACCAAGGCCTTGACT+TGG + Chr8:36889215-36889234 MsG0880044171.01.T01:CDS 45.0%
TCTTCATCCTCCATTGTGGT+TGG - Chr8:36889096-36889115 None:intergenic 45.0%
TGATCTTGCTCCATTCTTGC+AGG - Chr8:36888847-36888866 None:intergenic 45.0%
TGGTTGCAGAGACAACAATC+AGG + Chr8:36889269-36889288 MsG0880044171.01.T01:CDS 45.0%
TTGTGAGGGTCCTGATAGAA+TGG + Chr8:36890136-36890155 MsG0880044171.01.T01:CDS 45.0%
! AAGGTTTTGCCCTGCAAGAA+TGG + Chr8:36888834-36888853 MsG0880044171.01.T01:CDS 45.0%
! AGGGTTGCCTTTTACTTGGT+TGG + Chr8:36890297-36890316 MsG0880044171.01.T01:CDS 45.0%
! TTGCCACAGCATTGAAGTGT+AGG + Chr8:36889367-36889386 MsG0880044171.01.T01:CDS 45.0%
!! GCTTGACTTGTACACTTGAG+TGG - Chr8:36890224-36890243 None:intergenic 45.0%
!! TTGGCTTTGTCAAGTCCTTC+AGG + Chr8:36889315-36889334 MsG0880044171.01.T01:CDS 45.0%
CAATGCTGTGGCAAAGCAGT+AGG - Chr8:36889361-36889380 None:intergenic 50.0%
CCACAATCACAAGCCAGTCT+CGG + Chr8:36889192-36889211 MsG0880044171.01.T01:CDS 50.0%
CCTCCAAAGCTCAGGATAAC+AGG + Chr8:36889663-36889682 MsG0880044171.01.T01:CDS 50.0%
GCAGGGCAAAACCTTCTGAT+AGG - Chr8:36888829-36888848 None:intergenic 50.0%
GCGAGGTTCCTTATTAGCGA+AGG - Chr8:36889627-36889646 None:intergenic 50.0%
GTAGCGTATGGACCAAGTCA+AGG - Chr8:36889230-36889249 None:intergenic 50.0%
TATGGACCAAGTCAAGGCCT+TGG - Chr8:36889224-36889243 None:intergenic 50.0%
! CCTGTTATCCTGAGCTTTGG+AGG - Chr8:36889666-36889685 None:intergenic 50.0%
!! TGACTTGGTCCATACGCTAC+TGG + Chr8:36889230-36889249 MsG0880044171.01.T01:CDS 50.0%
GATGGCTTCTGCTTGGCAAG+TGG + Chr8:36890337-36890356 MsG0880044171.01.T01:CDS 55.0%
GCCAGTCTCGGTATGAACCA+AGG + Chr8:36889204-36889223 MsG0880044171.01.T01:CDS 55.0%
GCCTTGGTTCATACCGAGAC+TGG - Chr8:36889208-36889227 None:intergenic 55.0%
!! CCGAGACTGGCTTGTGATTG+TGG - Chr8:36889195-36889214 None:intergenic 55.0%
AACCTCGCTTCGAGGCCTGA+GGG + Chr8:36889639-36889658 MsG0880044171.01.T01:CDS 60.0%
CGGCACAAGCCAGTAGCGTA+TGG - Chr8:36889242-36889261 None:intergenic 60.0%
GTCTCTGCAACCAACGGCCT+CGG - Chr8:36889262-36889281 None:intergenic 60.0%
!! TACGCTACTGGCTTGTGCCG+AGG + Chr8:36889242-36889261 MsG0880044171.01.T01:CDS 60.0%
ACCTCGCTTCGAGGCCTGAG+GGG + Chr8:36889640-36889659 MsG0880044171.01.T01:CDS 65.0%
CTGAGGGGCCTCCAAAGCTC+AGG + Chr8:36889655-36889674 MsG0880044171.01.T01:CDS 65.0%
GAACCTCGCTTCGAGGCCTG+AGG + Chr8:36889638-36889657 MsG0880044171.01.T01:CDS 65.0%
!! CTGAGCTTTGGAGGCCCCTC+AGG - Chr8:36889657-36889676 None:intergenic 65.0%
! CTGGCTTGTGCCGAGGCCGT+TGG + Chr8:36889249-36889268 MsG0880044171.01.T01:CDS 70.0%
GCCCCTCAGGCCTCGAAGCG+AGG - Chr8:36889644-36889663 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 36888766 36890391 36888766 ID=MsG0880044171.01;Name=MsG0880044171.01
Chr8 mRNA 36888766 36890391 36888766 ID=MsG0880044171.01.T01;Parent=MsG0880044171.01;Name=MsG0880044171.01.T01;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|541
Chr8 exon 36888766 36890391 36888766 ID=MsG0880044171.01.T01:exon:5085;Parent=MsG0880044171.01.T01
Chr8 CDS 36888766 36890391 36888766 ID=MsG0880044171.01.T01:cds;Parent=MsG0880044171.01.T01
Gene Sequence

>MsG0880044171.01.T01

ATGGAAGACTTAAACATGTGGCTTTCCTTCTATATGAATGAAAGTGTCAACCTTGATTTCCCTATCAGAAGGTTTTGCCCTGCAAGAATGGAGCAAGATCAAGAAGGAGATTGCCATGACCAAGAGACAGTTCTTGATGATGTTGAATTGTGTACTTTTGATACTTCAACCAGTCCTTGTTTATTACCTTCTTCAGAAGTTGATGACTTTGTTGATAGCTTCATCAACATGGATCAATATGAAGATCAAGAGTCTCAAGAGAAGAATCATCAAAGTCAAAGTTTTGATCATCACTTTTTGGTGAATGATGATGTCTTTGAATATGATCCAACCACAATGGAGGATGAAGAATTTGAGATCTGTGAAAATACAACAATCACAATGGAAGCCGAAGAAGTTGAAATGAACGATACATTTGGTGTTATTCCACAATCACAAGCCAGTCTCGGTATGAACCAAGGCCTTGACTTGGTCCATACGCTACTGGCTTGTGCCGAGGCCGTTGGTTGCAGAGACAACAATCAGGCGAATTTGTTACTTGGTAAAATTTTGGCTTTGTCAAGTCCTTCAGGAGATTCGTTACAAAGAGTCTCCTACTGCTTTGCCACAGCATTGAAGTGTAGGTTATCACTTTATCCACATAATGTATTTTCAAATAGTACACTCACAACAAGTACTTCTAATGATGTTTCTTTGATTACTAGGGAGAATAAGTTGGAAGCTTTTCAACTTCTTTACCAAACAACACCTTATATTACTTTTGGTTTCATGGCTGCAAATGAAGCTATATGCCAAGGATCAAAAGGAAAAAGCTCAATACACATAATTGATTTGGGAATGGAGCATACTCTTCAATGGCCTTCGCTAATAAGGAACCTCGCTTCGAGGCCTGAGGGGCCTCCAAAGCTCAGGATAACAGGATTCAGTACGAGTGAAGAAAACAACGCAAAACTTCGTGCTAGCATGTATTTGCTTGTAGAAGAAGCACTCTCATTGGGAATAGTCCTTGAATTTCACATAATATCAGAGCCGGCAACTCCTTCTCTTCTTACAATCGAAAACCTCAACTTGAGAGAAGGTGAATCTTTATTTGTTAATAGCATCTTGAAATTGCACAAATATGTGAAAGAAAGTAGAGGTTATCTAAAATCAATTCTTCAATCAATCAAGAAGCTAAGTCCAATTGCACTCACAGTTGTAGAGCAAGATACAAACCACAATGGACCTTTCTTTCTTGGTAGGTTTCTAGAATCACTTCACTATTACTCAGCAATATTTGATTCTCTTGAGGCAAGTATGCCAAGAAATAGTCCAATTAGGATGAAAATAGAGAGAGTACATTTTGCAGAAGAAATTTGTAACATTGTAGCTTGTGAGGGTCCTGATAGAATGGAGAGACATGAAAGAGTAGATCAATGGAGAAGACAATTAGGAAGAGCAGGATTTCAAGTAATGCCACTCAAGTGTACAAGTCAAGCTAGAATGATGCTTTCTGTTTATGATTGTGATGGATATACATTGTCATGTGAAAAGGGTTGCCTTTTACTTGGTTGGAAAGGAAGGTCTATTATGATGGCTTCTGCTTGGCAAGTGGCAAGTTTGTCATATACTGATAGAGCCTCTTAA
Protein sequence

>MsG0880044171.01.T01

MEDLNMWLSFYMNESVNLDFPIRRFCPARMEQDQEGDCHDQETVLDDVELCTFDTSTSPCLLPSSEVDDFVDSFINMDQYEDQESQEKNHQSQSFDHHFLVNDDVFEYDPTTMEDEEFEICENTTITMEAEEVEMNDTFGVIPQSQASLGMNQGLDLVHTLLACAEAVGCRDNNQANLLLGKILALSSPSGDSLQRVSYCFATALKCRLSLYPHNVFSNSTLTTSTSNDVSLITRENKLEAFQLLYQTTPYITFGFMAANEAICQGSKGKSSIHIIDLGMEHTLQWPSLIRNLASRPEGPPKLRITGFSTSEENNAKLRASMYLLVEEALSLGIVLEFHIISEPATPSLLTIENLNLREGESLFVNSILKLHKYVKESRGYLKSILQSIKKLSPIALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMPRNSPIRMKIERVHFAEEICNIVACEGPDRMERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTLSCEKGCLLLGWKGRSIMMASAWQVASLSYTDRAS*