AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016018.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016018.01.T01 MTR_3g081490 89.286 476 15 3 1 440 1 476 0.0 806
MsG0380016018.01.T01 MTR_3g081490 85.714 385 19 3 1 349 1 385 0.0 637
MsG0380016018.01.T01 MTR_3g081490 87.302 378 12 3 1 342 1 378 0.0 637
MsG0380016018.01.T01 MTR_4g059540 39.767 430 197 10 45 432 95 504 3.78e-82 262
MsG0380016018.01.T01 MTR_4g059540 39.200 375 170 9 45 381 95 449 2.14e-65 217
MsG0380016018.01.T01 MTR_1g064710 35.194 412 199 13 67 432 97 486 6.55e-65 217
MsG0380016018.01.T01 MTR_2g094130 37.076 383 197 10 71 419 89 461 1.26e-61 208
MsG0380016018.01.T01 MTR_2g094130 36.598 388 197 11 71 419 89 466 2.87e-59 202
MsG0380016018.01.T01 MTR_1g064710 36.311 347 157 11 67 370 97 422 1.86e-52 182
MsG0380016018.01.T01 MTR_2g020520 32.547 424 195 18 26 402 34 413 1.43e-42 155
MsG0380016018.01.T01 MTR_2g020520 32.235 425 197 17 25 402 32 412 5.79e-42 154
MsG0380016018.01.T01 MTR_1g064710 36.364 319 139 11 67 342 97 394 7.10e-41 150
MsG0380016018.01.T01 MTR_2g020520 39.352 216 88 7 225 402 94 304 1.92e-40 147
MsG0380016018.01.T01 MTR_4g459440 57.576 99 42 0 316 414 1 99 8.73e-35 126
MsG0380016018.01.T01 MTR_4g059540 38.073 218 120 5 45 262 95 297 7.70e-27 111
MsG0380016018.01.T01 MTR_1g064710 33.333 291 130 11 67 314 97 366 2.61e-26 109
MsG0380016018.01.T01 MTR_2g094130 34.657 277 138 9 71 313 89 356 6.81e-25 106
MsG0380016018.01.T01 MTR_2g094130 34.657 277 138 9 71 313 89 356 7.15e-25 106
MsG0380016018.01.T01 MTR_7g075740 31.472 197 105 5 238 409 41 232 5.41e-22 94.7
MsG0380016018.01.T01 MTR_7g075700 29.958 237 110 7 230 415 25 256 1.19e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016018.01.T01 AT5G60580 41.763 431 186 14 18 400 34 447 5.38e-78 251
MsG0380016018.01.T01 AT5G60580 41.763 431 186 14 18 400 34 447 5.38e-78 251
MsG0380016018.01.T01 AT5G60580 41.096 438 186 15 18 400 34 454 3.91e-75 243
MsG0380016018.01.T01 AT5G60580 41.096 438 186 15 18 400 34 454 3.91e-75 243
MsG0380016018.01.T01 AT3G09760 35.422 367 175 10 76 402 115 459 2.01e-58 199
MsG0380016018.01.T01 AT5G03180 33.246 382 187 12 76 415 97 452 5.02e-56 192
MsG0380016018.01.T01 AT5G03180 33.854 384 186 13 76 415 62 421 8.41e-56 191
MsG0380016018.01.T01 AT5G03180 33.854 384 186 13 76 415 97 456 1.92e-55 191
MsG0380016018.01.T01 AT3G06330 31.941 407 201 14 33 402 48 415 8.22e-39 145
MsG0380016018.01.T01 AT3G06330 36.667 270 122 8 171 404 50 306 3.05e-38 141
MsG0380016018.01.T01 AT3G06330 39.111 225 100 6 216 404 25 248 2.09e-37 137
MsG0380016018.01.T01 AT5G03180 33.333 321 150 12 76 352 97 397 1.70e-34 133
MsG0380016018.01.T01 AT5G03180 33.127 323 152 12 76 352 97 401 4.98e-34 132
MsG0380016018.01.T01 AT5G18760 29.919 371 195 11 65 399 56 397 2.87e-26 110
MsG0380016018.01.T01 AT3G06330 29.942 344 165 14 33 339 48 352 3.24e-15 77.4

Find 102 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCAACATTCACTGGATT+TGG 0.151106 3:-77936344 MsG0380016018.01.T01:CDS
CTACAAACTGCTTCTTCTTC+TGG 0.229948 3:+77938843 None:intergenic
AGAAATTTCAAGAGTGTTAC+TGG 0.238520 3:+77938660 None:intergenic
TAAGACCTGCAACAGATTCT+AGG 0.241872 3:-77939376 MsG0380016018.01.T01:CDS
GTGTACCAGGTTTCAGATTT+GGG 0.251435 3:-77937247 MsG0380016018.01.T01:intron
AGTGTACCAGGTTTCAGATT+TGG 0.280953 3:-77937248 MsG0380016018.01.T01:intron
TACTTTCTGATAGGAGCTTT+AGG 0.312686 3:-77939805 MsG0380016018.01.T01:CDS
AGATGAAAGACTAGGCCTTC+TGG 0.314784 3:+77939970 None:intergenic
TTTCAACATTCACTGGATTT+GGG 0.323066 3:-77936343 MsG0380016018.01.T01:CDS
GTTACTCCAATTGCTAATTC+AGG 0.332975 3:-77939620 MsG0380016018.01.T01:CDS
TTCTTCTCTTCTTCATCATC+AGG 0.347218 3:-77940606 MsG0380016018.01.T01:intron
CCCATCTGATATATTCCATT+AGG 0.353626 3:+77936297 None:intergenic
GCACTTTCTAGTGTCCTTGT+TGG 0.354525 3:+77939938 None:intergenic
CAGCATGAATTCTCTCCTAA+TGG 0.357709 3:-77936312 MsG0380016018.01.T01:CDS
TTAGCGGCTTTGACATTAAC+CGG 0.367120 3:+77939401 None:intergenic
CAGAAGAAGAAGCAGTTTGT+AGG 0.369236 3:-77938842 MsG0380016018.01.T01:CDS
ATCATCAGATAATGGTCCTT+TGG 0.385393 3:-77939726 MsG0380016018.01.T01:CDS
ATATCAGATGGGAAACAAAT+AGG 0.392592 3:-77936286 MsG0380016018.01.T01:CDS
CTAGTCCGCCGACTGTTGTT+CGG 0.403377 3:-77938639 MsG0380016018.01.T01:CDS
GATACTTTATCATCAGATAA+TGG 0.405699 3:-77939734 MsG0380016018.01.T01:CDS
TTTGGTGGAGCTTGCGGAAG+GGG 0.407562 3:-77938814 MsG0380016018.01.T01:CDS
GTTCTTCTTTCAACATTCAC+TGG 0.409765 3:-77936350 MsG0380016018.01.T01:CDS
AGAGAAGAATCTGACATCAT+TGG 0.413265 3:+77940620 None:intergenic
TTGCTTTCTGGAGGAACTAC+TGG 0.417824 3:-77937444 MsG0380016018.01.T01:intron
AGCAGTTTGTAGGATTTGTT+TGG 0.425476 3:-77938832 MsG0380016018.01.T01:CDS
CAGTGAGCAGGAGTTACATA+TGG 0.426184 3:-77936533 MsG0380016018.01.T01:CDS
ATAATAAGCCTTCAACTTCA+AGG 0.427266 3:-77939703 MsG0380016018.01.T01:CDS
ATCTATCATTGCTTCAACCA+TGG 0.437805 3:-77937170 MsG0380016018.01.T01:CDS
TCTGCACCTGAATTAGCAAT+TGG 0.438182 3:+77939614 None:intergenic
AGACGCCTAGAATCTGTTGC+AGG 0.448575 3:+77939371 None:intergenic
ACTTTGGTAGAATGTGGCCT+TGG 0.449976 3:+77939848 None:intergenic
TGCAACAGATTCTAGGCGTC+TGG 0.456493 3:-77939369 MsG0380016018.01.T01:CDS
AATAGAATATATGCGCAAAC+AGG 0.461916 3:+77936478 None:intergenic
GAATGAGACCTTGAAGTTGA+AGG 0.470115 3:+77939695 None:intergenic
AGAGTGTTACTGGAAGATTC+CGG 0.479931 3:+77938670 None:intergenic
GAATTAGCAATTGGAGTAAC+CGG 0.483095 3:+77939623 None:intergenic
TTGGTAGAATGTGGCCTTGG+TGG 0.484999 3:+77939851 None:intergenic
ACAGGATGACAAATGCGAAC+TGG 0.485665 3:+77936496 None:intergenic
GCAGGAGAAAGGCAATGAAA+TGG 0.491496 3:+77937210 None:intergenic
TCTATCATTGCTTCAACCAT+GGG 0.492217 3:-77937169 MsG0380016018.01.T01:intron
TTTCATAGAGGACTTGACTT+TGG 0.494952 3:+77939832 None:intergenic
TAAAGCGGCGCATTCGTTAC+CGG 0.496773 3:-77939642 MsG0380016018.01.T01:CDS
CCTTGGTGGCAGTCCTCTAG+TGG 0.497730 3:+77939865 None:intergenic
TGTTTGGTGGAGCTTGCGGA+AGG 0.499210 3:-77938816 MsG0380016018.01.T01:CDS
GGCAGTCCTCTAGTGGAACC+TGG 0.502946 3:+77939872 None:intergenic
TGTTGCAGGTCTTAAATTAG+CGG 0.503069 3:+77939385 None:intergenic
CTCTTGCATTGAATCACTGC+GGG 0.504151 3:+77939295 None:intergenic
TTCTTCTTCTGGAATATCCT+CGG 0.504900 3:+77938854 None:intergenic
GAAACACCATCAGTAGTTGC+TGG 0.505889 3:+77939320 None:intergenic
TCCTAATGGAATATATCAGA+TGG 0.511034 3:-77936298 MsG0380016018.01.T01:CDS
AGTGATTCAATGCAAGAGAT+TGG 0.513825 3:-77939290 MsG0380016018.01.T01:intron
GTGGTATCAACTACAGTCAT+TGG 0.514336 3:+77936165 None:intergenic
TTGCTAACCAAGACAAGTAC+TGG 0.516767 3:+77937479 None:intergenic
AGACCTAAAATGCAGGAGAA+AGG 0.534858 3:+77937199 None:intergenic
AGTTTGTAGGATTTGTTTGG+TGG 0.537738 3:-77938829 MsG0380016018.01.T01:CDS
CCATCAGTAGTTGCTGGCTG+TGG 0.539566 3:+77939326 None:intergenic
ATGTCTGCAAGCAGGATGTC+CGG 0.544697 3:-77938689 MsG0380016018.01.T01:intron
TTGGTGGAGCTTGCGGAAGG+GGG 0.544999 3:-77938813 MsG0380016018.01.T01:CDS
TGAAAGGAGACCTAAAATGC+AGG 0.547003 3:+77937192 None:intergenic
GTTTGGTGGAGCTTGCGGAA+GGG 0.550368 3:-77938815 MsG0380016018.01.T01:CDS
GGATGTACCAGTACTTGTCT+TGG 0.550915 3:-77937486 MsG0380016018.01.T01:CDS
TGCGCCGCTTTACTCGATGA+AGG 0.559142 3:+77939653 None:intergenic
AATGAAATGGCGAGAGCACG+TGG 0.562922 3:+77937223 None:intergenic
AACGTATGCCGAACAACAGT+CGG 0.564365 3:+77938631 None:intergenic
GGTCCTACATTATCAAGTCC+AGG 0.565636 3:-77939890 MsG0380016018.01.T01:CDS
TGTTAATTTCACAGTCCAGA+AGG 0.566940 3:-77939985 MsG0380016018.01.T01:intron
CTTGTAGCTTAATGTGAGTG+CGG 0.568172 3:-77936381 MsG0380016018.01.T01:intron
TGCATCCTTTGCAGTTGATG+TGG 0.568430 3:+77936200 None:intergenic
GTTGAAGGCTTATTATCCAA+AGG 0.569830 3:+77939710 None:intergenic
GATTTGTTTGGTGGAGCTTG+CGG 0.571135 3:-77938820 MsG0380016018.01.T01:CDS
TAATGTAGGACCATCTGTCT+TGG 0.572242 3:+77939901 None:intergenic
ATGACTGTAGTTGATACCAC+TGG 0.573119 3:-77936162 MsG0380016018.01.T01:exon
TAAATATATCTGAAGAGTGA+AGG 0.578970 3:-77935957 MsG0380016018.01.T01:three_prime_UTR
TTGAAGCAATGATAGATGAA+AGG 0.581811 3:+77937176 None:intergenic
GAATCTAACTTTGATGGAGA+AGG 0.587506 3:-77940672 None:intergenic
AGTGAGCAGGAGTTACATAT+GGG 0.587689 3:-77936532 MsG0380016018.01.T01:CDS
CCTAATGGAATATATCAGAT+GGG 0.587851 3:-77936297 MsG0380016018.01.T01:CDS
AGGATGGACTGCAGTTGCAA+AGG 0.592249 3:-77938780 MsG0380016018.01.T01:intron
GACTTGACTTTGGTAGAATG+TGG 0.592551 3:+77939842 None:intergenic
TCAAGTCCAGGTTCCACTAG+AGG 0.596293 3:-77939878 MsG0380016018.01.T01:CDS
AGTCATTGAAGATGCTTCCG+AGG 0.600332 3:-77938871 MsG0380016018.01.T01:CDS
TCAGGTGCAGAGAATGTACA+TGG 0.600495 3:-77939602 MsG0380016018.01.T01:CDS
CCACTAGAGGACTGCCACCA+AGG 0.602093 3:-77939865 MsG0380016018.01.T01:CDS
CCACAGCCAGCAACTACTGA+TGG 0.604437 3:-77939326 MsG0380016018.01.T01:CDS
TGTACATGGAAGACATGTAG+AGG 0.604726 3:-77939588 MsG0380016018.01.T01:CDS
GTTCCCTTCATCGAGTAAAG+CGG 0.605134 3:-77939657 MsG0380016018.01.T01:CDS
AGAATGCAGACATATACTCT+AGG 0.607758 3:-77935996 MsG0380016018.01.T01:three_prime_UTR
AAGATTGGCATTCTAGAGTG+TGG 0.608275 3:-77936064 MsG0380016018.01.T01:three_prime_UTR
TCATCTTCTACCAAGACAGA+TGG 0.609887 3:-77939911 MsG0380016018.01.T01:CDS
GACAACCACATCAACTGCAA+AGG 0.622140 3:-77936205 MsG0380016018.01.T01:CDS
GCGCCGCTTTACTCGATGAA+GGG 0.624936 3:+77939654 None:intergenic
CTAACTTTGATGGAGAAGGA+AGG 0.627321 3:-77940668 None:intergenic
GAACCTGGACTTGATAATGT+AGG 0.628266 3:+77939887 None:intergenic
CATCTCTACAAATACCAACA+AGG 0.638179 3:-77939952 MsG0380016018.01.T01:CDS
ATTTGTAGAGATGAAAGACT+AGG 0.650609 3:+77939962 None:intergenic
GTTTAAAATACTACTGCACA+TGG 0.670993 3:+77936022 None:intergenic
CATGGAAGACATGTAGAGGG+TGG 0.692052 3:-77939584 MsG0380016018.01.T01:CDS
TAAAATACTACTGCACATGG+TGG 0.700579 3:+77936025 None:intergenic
GTACATGGAAGACATGTAGA+GGG 0.703736 3:-77939587 MsG0380016018.01.T01:CDS
TCTCTTGCATTGAATCACTG+CGG 0.705550 3:+77939294 None:intergenic
ATGAAATGGCGAGAGCACGT+GGG 0.733732 3:+77937224 None:intergenic
GTATGCCGAACAACAGTCGG+CGG 0.741737 3:+77938634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCTTTATAGATATTAAAT+AGG - Chr3:77937509-77937528 MsG0380016018.01.T01:intron 10.0%
!!! AAATTATAATTTTAGCTTTT+GGG - Chr3:77936156-77936175 MsG0380016018.01.T01:three_prime_UTR 10.0%
!!! ATATTTTTTCATTTTCTTTT+TGG - Chr3:77939517-77939536 MsG0380016018.01.T01:intron 10.0%
!!! TAAATTATAATTTTAGCTTT+TGG - Chr3:77936155-77936174 MsG0380016018.01.T01:three_prime_UTR 10.0%
!!! TATTTTTTCATTTTCTTTTT+GGG - Chr3:77939518-77939537 MsG0380016018.01.T01:intron 10.0%
!!! TTTTAAATATGTTTTTTTGT+TGG - Chr3:77940049-77940068 MsG0380016018.01.T01:intron 10.0%
!! AATATTGGAGAAAATAAAAA+AGG + Chr3:77936196-77936215 None:intergenic 15.0%
!! TTATTTGAACAATATTCATA+CGG + Chr3:77939568-77939587 None:intergenic 15.0%
!!! AATTTTTCTTTAGATCAAAT+GGG - Chr3:77936096-77936115 MsG0380016018.01.T01:three_prime_UTR 15.0%
!!! TAATTTTTCTTTAGATCAAA+TGG - Chr3:77936095-77936114 MsG0380016018.01.T01:three_prime_UTR 15.0%
!!! TTTCTCCAATATTTTTTTTT+TGG - Chr3:77936203-77936222 MsG0380016018.01.T01:CDS 15.0%
!!! TTTTATCATAAACCATATTT+CGG - Chr3:77938557-77938576 MsG0380016018.01.T01:intron 15.0%
!! AAAAACTAGATTGCTAAAAA+AGG + Chr3:77936494-77936513 None:intergenic 20.0%
!! AAATACATCAAACTCAAATT+TGG + Chr3:77936562-77936581 None:intergenic 20.0%
!! AAATTTGGTACATTAAAATG+TGG + Chr3:77936547-77936566 None:intergenic 20.0%
!! AATCTCTTCATAATATTCAT+AGG + Chr3:77937544-77937563 None:intergenic 20.0%
!! AATGACACAAAAATATCTAA+TGG + Chr3:77936405-77936424 None:intergenic 20.0%
!! AGTGACATAAAAATATCTAA+TGG + Chr3:77936522-77936541 None:intergenic 20.0%
!! ATACAAAACAATCTACTATT+TGG + Chr3:77938926-77938945 None:intergenic 20.0%
!! ATATTTGGAAATTAATGAGT+TGG + Chr3:77938584-77938603 None:intergenic 20.0%
!! ATCTCTTCATAATATTCATA+GGG + Chr3:77937543-77937562 None:intergenic 20.0%
!! ATGTTAAAAACAATGAAACA+CGG + Chr3:77939876-77939895 None:intergenic 20.0%
!! CACAACCAAAAAAAAAATAT+TGG + Chr3:77936211-77936230 None:intergenic 20.0%
!! CTAATTATAATATACTCTAC+AGG - Chr3:77939088-77939107 MsG0380016018.01.T01:intron 20.0%
!! CTATAAAGATAAAAAGATAG+AGG + Chr3:77937500-77937519 None:intergenic 20.0%
!! GAGTATATTATAATTAGAGA+AGG + Chr3:77939085-77939104 None:intergenic 20.0%
!! TAAAATGATCAAACAAAGAT+CGG + Chr3:77939194-77939213 None:intergenic 20.0%
!! TATTTGAACAATATTCATAC+GGG + Chr3:77939567-77939586 None:intergenic 20.0%
!! TCTATAATTTCATGTTTGTT+AGG + Chr3:77938415-77938434 None:intergenic 20.0%
!! TGAAAAATTTACTTTCTGAT+AGG - Chr3:77936791-77936810 MsG0380016018.01.T01:intron 20.0%
!! TTATAGTGAAGATTTCAAAA+GGG + Chr3:77937387-77937406 None:intergenic 20.0%
!! TTCTAGATAATCTTGTAATT+TGG + Chr3:77938156-77938175 None:intergenic 20.0%
!!! AGAAAGTAAATTTTTCATAG+AGG + Chr3:77936788-77936807 None:intergenic 20.0%
!!! AGAAAGTATTAGGAAATATT+TGG + Chr3:77938599-77938618 None:intergenic 20.0%
!!! ATTATTTGTTGATTAAGATG+TGG + Chr3:77936430-77936449 None:intergenic 20.0%
!!! ATTTTCTATGATACTAAGAT+TGG - Chr3:77940526-77940545 MsG0380016018.01.T01:intron 20.0%
!!! ATTTTTGTATTTGTACAAGA+TGG - Chr3:77939309-77939328 MsG0380016018.01.T01:CDS 20.0%
!!! GCGAAAATAATAAAAAGTAT+TGG + Chr3:77938195-77938214 None:intergenic 20.0%
!!! TTATGATTTTGTTTCAGATT+AGG + Chr3:77939648-77939667 None:intergenic 20.0%
!!! TTTTACTAGGCAAATATATT+AGG - Chr3:77938754-77938773 MsG0380016018.01.T01:intron 20.0%
! AAAGATTAGTAGAAGAGTTT+AGG + Chr3:77939947-77939966 None:intergenic 25.0%
! AAGGTTAATCTGTATGTAAA+TGG - Chr3:77938378-77938397 MsG0380016018.01.T01:intron 25.0%
! AATTATGCTACATAAGCAAA+AGG + Chr3:77936080-77936099 None:intergenic 25.0%
! AGAATGGAACAATTATTTGT+CGG + Chr3:77936346-77936365 None:intergenic 25.0%
! ATGTAACAAATAACTTGAGA+TGG + Chr3:77938829-77938848 None:intergenic 25.0%
! ATTATGCTACATAAGCAAAA+GGG + Chr3:77936079-77936098 None:intergenic 25.0%
! ATTTGAACAATATTCATACG+GGG + Chr3:77939566-77939585 None:intergenic 25.0%
! GACTTATTCATAAAACATGA+TGG + Chr3:77940178-77940197 None:intergenic 25.0%
! GATACTTTATCATCAGATAA+TGG - Chr3:77936871-77936890 MsG0380016018.01.T01:intron 25.0%
! GATTATTGTAACAAGTTACT+AGG + Chr3:77939993-77940012 None:intergenic 25.0%
! GGTTTATGATAAAAACATCA+TGG + Chr3:77938551-77938570 None:intergenic 25.0%
! GTTATAGTGAAGATTTCAAA+AGG + Chr3:77937388-77937407 None:intergenic 25.0%
! TAAATATATCTGAAGAGTGA+AGG - Chr3:77940648-77940667 MsG0380016018.01.T01:CDS 25.0%
! TATAAATGTGACAACTTACT+AGG - Chr3:77938706-77938725 MsG0380016018.01.T01:intron 25.0%
! TCTCTTTCAATAATAGTTTC+AGG + Chr3:77938976-77938995 None:intergenic 25.0%
! TGGTAAATCTTCATGATATA+TGG - Chr3:77937335-77937354 MsG0380016018.01.T01:intron 25.0%
! TTGAATGTAATCACATTCAT+TGG + Chr3:77939801-77939820 None:intergenic 25.0%
! TTTAGCAAGAATTGGAATAA+AGG - Chr3:77939717-77939736 MsG0380016018.01.T01:CDS 25.0%
! TTTCAAAGAAAGAAGCAAAA+GGG + Chr3:77936040-77936059 None:intergenic 25.0%
!! AATTCTGTAATAACCTTTTC+TGG + Chr3:77938470-77938489 None:intergenic 25.0%
!! TCTCAGTTTCTTTAGTTTAT+AGG + Chr3:77938895-77938914 None:intergenic 25.0%
!! TTTAGAGCGTTATTTAAGAA+AGG + Chr3:77938853-77938872 None:intergenic 25.0%
!! TTTTCAAAGAAAGAAGCAAA+AGG + Chr3:77936041-77936060 None:intergenic 25.0%
!!! AAACTATCACAGAAAGTATT+AGG + Chr3:77938609-77938628 None:intergenic 25.0%
!!! ACCAGTTTTTCAAAACTATA+AGG - Chr3:77940471-77940490 MsG0380016018.01.T01:intron 25.0%
!!! AGAATTTGCTCTTTGAAATT+TGG - Chr3:77939680-77939699 MsG0380016018.01.T01:CDS 25.0%
!!! ATAATAAAAAGTATTGGTCC+TGG + Chr3:77938189-77938208 None:intergenic 25.0%
!!! CATTTTAGTGTTTTCAAAAC+CGG - Chr3:77939207-77939226 MsG0380016018.01.T01:intron 25.0%
!!! CCAGTTTTTCAAAACTATAA+GGG - Chr3:77940472-77940491 MsG0380016018.01.T01:intron 25.0%
!!! GAATTTGCTCTTTGAAATTT+GGG - Chr3:77939681-77939700 MsG0380016018.01.T01:CDS 25.0%
!!! GATTGTTTTGTATTTCTCTT+CGG - Chr3:77938933-77938952 MsG0380016018.01.T01:intron 25.0%
!!! TTCATTGTTTTTAACATGAG+TGG - Chr3:77939879-77939898 MsG0380016018.01.T01:CDS 25.0%
AAGAAAATCGCTCAAAGATA+TGG - Chr3:77938323-77938342 MsG0380016018.01.T01:intron 30.0%
AATAGAATATATGCGCAAAC+AGG + Chr3:77940130-77940149 None:intergenic 30.0%
AATCTTCAATAAGCTTGTCA+TGG + Chr3:77937583-77937602 None:intergenic 30.0%
AGTGGATAATGATCTTACTA+TGG + Chr3:77940153-77940172 None:intergenic 30.0%
ATAATAAGCCTTCAACTTCA+AGG - Chr3:77936902-77936921 MsG0380016018.01.T01:intron 30.0%
ATAATATACTCTACAGGATC+TGG - Chr3:77939094-77939113 MsG0380016018.01.T01:intron 30.0%
ATATCAGATGGGAAACAAAT+AGG - Chr3:77940319-77940338 MsG0380016018.01.T01:intron 30.0%
ATTTGTAGAGATGAAAGACT+AGG + Chr3:77936646-77936665 None:intergenic 30.0%
CAACGATTGTCAAATTGTAT+CGG - Chr3:77939761-77939780 MsG0380016018.01.T01:CDS 30.0%
CCTAATGGAATATATCAGAT+GGG - Chr3:77940308-77940327 MsG0380016018.01.T01:intron 30.0%
CTAGGTAATTATCATGTCTA+TGG + Chr3:77939975-77939994 None:intergenic 30.0%
GTAAAGTGGTTTAGTATCAA+AGG - Chr3:77937879-77937898 MsG0380016018.01.T01:intron 30.0%
TAAGGGAACTAAAGTTACTT+TGG + Chr3:77939494-77939513 None:intergenic 30.0%
TATAATTAGAGAAGGCAGTT+GGG + Chr3:77939077-77939096 None:intergenic 30.0%
TCCTAATGGAATATATCAGA+TGG - Chr3:77940307-77940326 MsG0380016018.01.T01:intron 30.0%
TCTAATATGTAAGTTTGACG+AGG + Chr3:77938086-77938105 None:intergenic 30.0%
TTATAATTAGAGAAGGCAGT+TGG + Chr3:77939078-77939097 None:intergenic 30.0%
TTATATCATCTTCTACCCTA+TGG + Chr3:77936138-77936157 None:intergenic 30.0%
TTATGCTGTTCTCATAGTAA+TGG - Chr3:77937063-77937082 MsG0380016018.01.T01:intron 30.0%
TTCAAAGAAAGAAGCAAAAG+GGG + Chr3:77936039-77936058 None:intergenic 30.0%
TTCGCTTTGCTTTGATTATA+AGG - Chr3:77938210-77938229 MsG0380016018.01.T01:intron 30.0%
TTGAAGCAATGATAGATGAA+AGG + Chr3:77939432-77939451 None:intergenic 30.0%
TTTCAACATTCACTGGATTT+GGG - Chr3:77940262-77940281 MsG0380016018.01.T01:intron 30.0%
! ACTACCATTCAACGATTTTA+GGG + Chr3:77939618-77939637 None:intergenic 30.0%
! ATCTAGAACATTTAAGTTCC+AGG - Chr3:77938168-77938187 MsG0380016018.01.T01:intron 30.0%
! CTTTCTGTGATAGTTTTTCT+AGG - Chr3:77938613-77938632 MsG0380016018.01.T01:CDS 30.0%
! GTTTAAAATACTACTGCACA+TGG + Chr3:77940586-77940605 None:intergenic 30.0%
! TACAATAATCACTTGTTAGC+TGG - Chr3:77940003-77940022 MsG0380016018.01.T01:intron 30.0%
! TACTACCATTCAACGATTTT+AGG + Chr3:77939619-77939638 None:intergenic 30.0%
! TCATAAAACATGATGGAAAG+TGG + Chr3:77940171-77940190 None:intergenic 30.0%
! TGAAATTTGGGATTTACCAA+TGG - Chr3:77939693-77939712 MsG0380016018.01.T01:CDS 30.0%
! TTGAGCGATTTTCTTTCATT+AGG + Chr3:77938318-77938337 None:intergenic 30.0%
! TTTTAGACATGTGCTAGAAA+TGG - Chr3:77936580-77936599 MsG0380016018.01.T01:intron 30.0%
!! AGAAATTTCAAGAGTGTTAC+TGG + Chr3:77937948-77937967 None:intergenic 30.0%
!! TTCCATTCTAAAATCGAACT+CGG - Chr3:77936357-77936376 MsG0380016018.01.T01:CDS 30.0%
!!! CATGGTGGAATCAAATTTTT+TGG + Chr3:77940568-77940587 None:intergenic 30.0%
!!! CCCTTATAGTTTTGAAAAAC+TGG + Chr3:77940475-77940494 None:intergenic 30.0%
AAGCATGACAAGAACATTGT+AGG + Chr3:77938115-77938134 None:intergenic 35.0%
AAGTGCAAATGTAATTGCGA+TGG + Chr3:77937627-77937646 None:intergenic 35.0%
ACATAATTATGCGATGTTGG+AGG + Chr3:77938669-77938688 None:intergenic 35.0%
ACTTAACTCATAGCCAAACT+TGG + Chr3:77936318-77936337 None:intergenic 35.0%
AGAATGCAGACATATACTCT+AGG - Chr3:77940609-77940628 MsG0380016018.01.T01:CDS 35.0%
AGAGAAGAATCTGACATCAT+TGG + Chr3:77935988-77936007 None:intergenic 35.0%
AGAGAGCAGTAACTAATTAC+AGG - Chr3:77938011-77938030 MsG0380016018.01.T01:intron 35.0%
AGTGATTCAATGCAAGAGAT+TGG - Chr3:77937315-77937334 MsG0380016018.01.T01:intron 35.0%
AGTGCAAATGTAATTGCGAT+GGG + Chr3:77937626-77937645 None:intergenic 35.0%
ATAATTAGAGAAGGCAGTTG+GGG + Chr3:77939076-77939095 None:intergenic 35.0%
ATCGTTGTAAAGTGAAATGC+AGG + Chr3:77939748-77939767 None:intergenic 35.0%
ATCTATCATTGCTTCAACCA+TGG - Chr3:77939435-77939454 MsG0380016018.01.T01:CDS 35.0%
ATCTGTATGTAAATGGCTGT+TGG - Chr3:77938385-77938404 MsG0380016018.01.T01:intron 35.0%
ATCTTGTAATTTGGACCACA+AGG + Chr3:77938147-77938166 None:intergenic 35.0%
ATTCACTGAACGAGTCAAAA+AGG - Chr3:77938359-77938378 MsG0380016018.01.T01:intron 35.0%
CATCTCTACAAATACCAACA+AGG - Chr3:77936653-77936672 MsG0380016018.01.T01:intron 35.0%
CCAATTCTTGCTAAATCCAT+TGG + Chr3:77939712-77939731 None:intergenic 35.0%
CCCATCTGATATATTCCATT+AGG + Chr3:77940311-77940330 None:intergenic 35.0%
CTTAACTCATAGCCAAACTT+GGG + Chr3:77936317-77936336 None:intergenic 35.0%
CTTAACTCCAAACCAAACTT+AGG + Chr3:77936267-77936286 None:intergenic 35.0%
CTTCAATGACTGAAACCAAA+CGG + Chr3:77937725-77937744 None:intergenic 35.0%
CTTTCAACATTCACTGGATT+TGG - Chr3:77940261-77940280 MsG0380016018.01.T01:intron 35.0%
CTTTGCTTTGATTATAAGGC+TGG - Chr3:77938214-77938233 MsG0380016018.01.T01:intron 35.0%
GAATTAGCAATTGGAGTAAC+CGG + Chr3:77936985-77937004 None:intergenic 35.0%
GTTACTCCAATTGCTAATTC+AGG - Chr3:77936985-77937004 MsG0380016018.01.T01:intron 35.0%
GTTCATGGCCAAAAACTAAT+CGG + Chr3:77939544-77939563 None:intergenic 35.0%
GTTCTTCTTTCAACATTCAC+TGG - Chr3:77940255-77940274 MsG0380016018.01.T01:intron 35.0%
GTTGAAGGCTTATTATCCAA+AGG + Chr3:77936898-77936917 None:intergenic 35.0%
TAAAATACTACTGCACATGG+TGG + Chr3:77940583-77940602 None:intergenic 35.0%
TACTTTCTGATAGGAGCTTT+AGG - Chr3:77936800-77936819 MsG0380016018.01.T01:intron 35.0%
TCCAACATCGCATAATTATG+TGG - Chr3:77938668-77938687 MsG0380016018.01.T01:CDS 35.0%
TCCACATAATTATGCGATGT+TGG + Chr3:77938672-77938691 None:intergenic 35.0%
TCGTAATCCTAAGTTTGGTT+TGG - Chr3:77936257-77936276 MsG0380016018.01.T01:CDS 35.0%
TCTATCATTGCTTCAACCAT+GGG - Chr3:77939436-77939455 MsG0380016018.01.T01:CDS 35.0%
TCTGTATGTAAATGGCTGTT+GGG - Chr3:77938386-77938405 MsG0380016018.01.T01:intron 35.0%
TGTTAATTTCACAGTCCAGA+AGG - Chr3:77936620-77936639 MsG0380016018.01.T01:intron 35.0%
TGTTGCAGGTCTTAAATTAG+CGG + Chr3:77937223-77937242 None:intergenic 35.0%
TTATACAACTAGTGACCCAT+TGG + Chr3:77939275-77939294 None:intergenic 35.0%
TTCTTCTCTTCTTCATCATC+AGG - Chr3:77935999-77936018 MsG0380016018.01.T01:three_prime_UTR 35.0%
TTCTTGTCATGCTTACTTGT+TGG - Chr3:77938121-77938140 MsG0380016018.01.T01:intron 35.0%
TTTCATAGAGGACTTGACTT+TGG + Chr3:77936776-77936795 None:intergenic 35.0%
! AAAGTTACTTTGGCATGCTA+AGG + Chr3:77939484-77939503 None:intergenic 35.0%
! AAGTTACTTTGGCATGCTAA+GGG + Chr3:77939483-77939502 None:intergenic 35.0%
! AGCAGTTTGTAGGATTTGTT+TGG - Chr3:77937773-77937792 MsG0380016018.01.T01:intron 35.0%
! AGTTTGTAGGATTTGTTTGG+TGG - Chr3:77937776-77937795 MsG0380016018.01.T01:intron 35.0%
! ATCATCAGATAATGGTCCTT+TGG - Chr3:77936879-77936898 MsG0380016018.01.T01:intron 35.0%
! CCAATGGATTTAGCAAGAAT+TGG - Chr3:77939709-77939728 MsG0380016018.01.T01:CDS 35.0%
! CTACCATTCAACGATTTTAG+GGG + Chr3:77939617-77939636 None:intergenic 35.0%
! TAATGAGTTGGACCGAAATA+TGG + Chr3:77938572-77938591 None:intergenic 35.0%
! TAGATCAAATGGGTTTCCAT+TGG - Chr3:77936106-77936125 MsG0380016018.01.T01:three_prime_UTR 35.0%
!! AACCGAGTTCGATTTTAGAA+TGG + Chr3:77936362-77936381 None:intergenic 35.0%
!! TCAAAGATTTCTAGTGTACC+AGG - Chr3:77939345-77939364 MsG0380016018.01.T01:CDS 35.0%
!! TTCCATTGGTTTGAACCATA+GGG - Chr3:77936120-77936139 MsG0380016018.01.T01:three_prime_UTR 35.0%
!! TTCTTCTTCTGGAATATCCT+CGG + Chr3:77937754-77937773 None:intergenic 35.0%
!! TTTCCATTGGTTTGAACCAT+AGG - Chr3:77936119-77936138 MsG0380016018.01.T01:three_prime_UTR 35.0%
!!! GACTACATTTTTTTCCCACA+TGG + Chr3:77939004-77939023 None:intergenic 35.0%
!!! TTTTTGGGCCGATTAGTTTT+TGG - Chr3:77939533-77939552 MsG0380016018.01.T01:intron 35.0%
AAATGTGTGTCTATGCATGC+GGG - Chr3:77938443-77938462 MsG0380016018.01.T01:intron 40.0%
ACAACTTACTAGGCAATCAC+TGG - Chr3:77938716-77938735 MsG0380016018.01.T01:intron 40.0%
AGACCTAAAATGCAGGAGAA+AGG + Chr3:77939409-77939428 None:intergenic 40.0%
AGTGACTCAGTACTTTGACT+GGG + Chr3:77939245-77939264 None:intergenic 40.0%
AGTGAGCAGGAGTTACATAT+GGG - Chr3:77940073-77940092 MsG0380016018.01.T01:intron 40.0%
AGTGTACCAGGTTTCAGATT+TGG - Chr3:77939357-77939376 MsG0380016018.01.T01:CDS 40.0%
CAAAGATATGGACGAAAACC+TGG - Chr3:77938335-77938354 MsG0380016018.01.T01:intron 40.0%
CAATATTCATACGGGGTTCA+TGG + Chr3:77939559-77939578 None:intergenic 40.0%
CAGAAGAAGAAGCAGTTTGT+AGG - Chr3:77937763-77937782 MsG0380016018.01.T01:intron 40.0%
CAGCATGAATTCTCTCCTAA+TGG - Chr3:77940293-77940312 MsG0380016018.01.T01:intron 40.0%
CTACAAACTGCTTCTTCTTC+TGG + Chr3:77937765-77937784 None:intergenic 40.0%
CTTGTAGCTTAATGTGAGTG+CGG - Chr3:77940224-77940243 MsG0380016018.01.T01:intron 40.0%
GAAATGTGTGTCTATGCATG+CGG - Chr3:77938442-77938461 MsG0380016018.01.T01:intron 40.0%
GAATGAGACCTTGAAGTTGA+AGG + Chr3:77936913-77936932 None:intergenic 40.0%
GACACTCGTAATCCTAAGTT+TGG - Chr3:77936252-77936271 MsG0380016018.01.T01:CDS 40.0%
GACTTGACTTTGGTAGAATG+TGG + Chr3:77936766-77936785 None:intergenic 40.0%
GGAGTTAAGTAAAGTCTGAC+TGG - Chr3:77936278-77936297 MsG0380016018.01.T01:CDS 40.0%
GTACATGGAAGACATGTAGA+GGG - Chr3:77937018-77937037 MsG0380016018.01.T01:intron 40.0%
GTGGTATCAACTACAGTCAT+TGG + Chr3:77940443-77940462 None:intergenic 40.0%
GTGTACCAGGTTTCAGATTT+GGG - Chr3:77939358-77939377 MsG0380016018.01.T01:CDS 40.0%
GTTAATCCTCTCAGAAGAAG+AGG - Chr3:77936230-77936249 MsG0380016018.01.T01:CDS 40.0%
TAAGACCTGCAACAGATTCT+AGG - Chr3:77937229-77937248 MsG0380016018.01.T01:CDS 40.0%
TAATGTAGGACCATCTGTCT+TGG + Chr3:77936707-77936726 None:intergenic 40.0%
TAATTAGAGAAGGCAGTTGG+GGG + Chr3:77939075-77939094 None:intergenic 40.0%
TACCCTATGGTTCAAACCAA+TGG + Chr3:77936125-77936144 None:intergenic 40.0%
TCATCTTCTACCAAGACAGA+TGG - Chr3:77936694-77936713 MsG0380016018.01.T01:intron 40.0%
TCTCTTGCATTGAATCACTG+CGG + Chr3:77937314-77937333 None:intergenic 40.0%
TCTGCACCTGAATTAGCAAT+TGG + Chr3:77936994-77937013 None:intergenic 40.0%
TGAAAGAGAACATGCCATGT+GGG - Chr3:77938987-77939006 MsG0380016018.01.T01:intron 40.0%
TGAAAGGAGACCTAAAATGC+AGG + Chr3:77939416-77939435 None:intergenic 40.0%
TGTACATGGAAGACATGTAG+AGG - Chr3:77937017-77937036 MsG0380016018.01.T01:intron 40.0%
TTGAAAGAGAACATGCCATG+TGG - Chr3:77938986-77939005 MsG0380016018.01.T01:intron 40.0%
TTGCTAACCAAGACAAGTAC+TGG + Chr3:77939129-77939148 None:intergenic 40.0%
! AGAGTGTTACTGGAAGATTC+CGG + Chr3:77937938-77937957 None:intergenic 40.0%
! ATAAGGCTGGTTGTAGTCTA+GGG - Chr3:77938227-77938246 MsG0380016018.01.T01:intron 40.0%
! ATGACTGTAGTTGATACCAC+TGG - Chr3:77940443-77940462 MsG0380016018.01.T01:intron 40.0%
! GAAAAACTGGTCTAAACCAG+TGG + Chr3:77940462-77940481 None:intergenic 40.0%
! GACTCGATCATTTTCAGTTC+CGG - Chr3:77937185-77937204 MsG0380016018.01.T01:CDS 40.0%
! GCTTGCATACTTTTGCTTTC+TGG - Chr3:77939149-77939168 MsG0380016018.01.T01:intron 40.0%
! TAATGTGAGTGCGGTTTTCT+CGG - Chr3:77940233-77940252 MsG0380016018.01.T01:intron 40.0%
! TAGTGTTTTCAAAACCGGAC+CGG - Chr3:77939212-77939231 MsG0380016018.01.T01:intron 40.0%
! TATAAGGCTGGTTGTAGTCT+AGG - Chr3:77938226-77938245 MsG0380016018.01.T01:intron 40.0%
! TGCATACTTTTGCTTTCTGG+AGG - Chr3:77939152-77939171 MsG0380016018.01.T01:intron 40.0%
! TTAGCGGCTTTGACATTAAC+CGG + Chr3:77937207-77937226 None:intergenic 40.0%
! TTGCCTTTCTCCTGCATTTT+AGG - Chr3:77939403-77939422 MsG0380016018.01.T01:CDS 40.0%
!! AAGATTGGCATTCTAGAGTG+TGG - Chr3:77940541-77940560 MsG0380016018.01.T01:intron 40.0%
!! CACATTCATTGGTGTCATGT+CGG + Chr3:77939790-77939809 None:intergenic 40.0%
!! GAACCTGGACTTGATAATGT+AGG + Chr3:77936721-77936740 None:intergenic 40.0%
!!! TTTTTTTGTTGGCAGTGAGC+AGG - Chr3:77940060-77940079 MsG0380016018.01.T01:intron 40.0%
AACGTATGCCGAACAACAGT+CGG + Chr3:77937977-77937996 None:intergenic 45.0%
AATTAGAGAAGGCAGTTGGG+GGG + Chr3:77939074-77939093 None:intergenic 45.0%
ACAGGATGACAAATGCGAAC+TGG + Chr3:77940112-77940131 None:intergenic 45.0%
ACCAAGACTGTGCAGTAAAG+TGG - Chr3:77937865-77937884 MsG0380016018.01.T01:intron 45.0%
ACCACTTTACTGCACAGTCT+TGG + Chr3:77937869-77937888 None:intergenic 45.0%
ACTTTGGTAGAATGTGGCCT+TGG + Chr3:77936760-77936779 None:intergenic 45.0%
AGATGAAAGACTAGGCCTTC+TGG + Chr3:77936638-77936657 None:intergenic 45.0%
AGTCATTGAAGATGCTTCCG+AGG - Chr3:77937734-77937753 MsG0380016018.01.T01:intron 45.0%
CACTCTCGTAATCCCAAGTT+TGG - Chr3:77936302-77936321 MsG0380016018.01.T01:CDS 45.0%
CAGTGACTCAGTACTTTGAC+TGG + Chr3:77939246-77939265 None:intergenic 45.0%
CAGTGAGCAGGAGTTACATA+TGG - Chr3:77940072-77940091 MsG0380016018.01.T01:intron 45.0%
CTCTTGCATTGAATCACTGC+GGG + Chr3:77937313-77937332 None:intergenic 45.0%
GAAACACCATCAGTAGTTGC+TGG + Chr3:77937288-77937307 None:intergenic 45.0%
GAAGAAAGCGAGTTTACCCA+TGG + Chr3:77939455-77939474 None:intergenic 45.0%
GACAACCACATCAACTGCAA+AGG - Chr3:77940400-77940419 MsG0380016018.01.T01:intron 45.0%
GAGCCCCTAAAATCGTTGAA+TGG - Chr3:77939611-77939630 MsG0380016018.01.T01:CDS 45.0%
GAGTCACTGGTCAAACCAAT+GGG - Chr3:77939257-77939276 MsG0380016018.01.T01:intron 45.0%
GCAGGAGAAAGGCAATGAAA+TGG + Chr3:77939398-77939417 None:intergenic 45.0%
GGATGTACCAGTACTTGTCT+TGG - Chr3:77939119-77939138 MsG0380016018.01.T01:intron 45.0%
GGTCCTACATTATCAAGTCC+AGG - Chr3:77936715-77936734 MsG0380016018.01.T01:intron 45.0%
GTTCCCTTCATCGAGTAAAG+CGG - Chr3:77936948-77936967 MsG0380016018.01.T01:intron 45.0%
TATACTCTACAGGATCTGGC+AGG - Chr3:77939098-77939117 MsG0380016018.01.T01:intron 45.0%
TCAGGTGCAGAGAATGTACA+TGG - Chr3:77937003-77937022 MsG0380016018.01.T01:intron 45.0%
TGACTCGTTCAGTGAATACC+AGG + Chr3:77938356-77938375 None:intergenic 45.0%
TGAGTCACTGGTCAAACCAA+TGG - Chr3:77939256-77939275 MsG0380016018.01.T01:intron 45.0%
! GATTTGTTTGGTGGAGCTTG+CGG - Chr3:77937785-77937804 MsG0380016018.01.T01:intron 45.0%
! GCACTTTCTAGTGTCCTTGT+TGG + Chr3:77936670-77936689 None:intergenic 45.0%
! GGTTGTAGTCTAGGGTCATT+AGG - Chr3:77938235-77938254 MsG0380016018.01.T01:intron 45.0%
! TGCATCCTTTGCAGTTGATG+TGG + Chr3:77940408-77940427 None:intergenic 45.0%
! TTGCATTTTGTCACGCCGTT+TGG - Chr3:77937707-77937726 MsG0380016018.01.T01:intron 45.0%
! TTGCTTTCTGGAGGAACTAC+TGG - Chr3:77939161-77939180 MsG0380016018.01.T01:intron 45.0%
!! ATGCTTACTTGTTGGCCTTG+TGG - Chr3:77938129-77938148 MsG0380016018.01.T01:intron 45.0%
!! CAGTCAAAGTACTGAGTCAC+TGG - Chr3:77939244-77939263 MsG0380016018.01.T01:intron 45.0%
!! TCAACGATTTTAGGGGCTCA+AGG + Chr3:77939610-77939629 None:intergenic 45.0%
!! AAAATGAAAAAATATAATTA+AGG + Chr3:77939512-77939531 None:intergenic 5.0%
!! AAATGAAAAAATATAATTAA+GGG + Chr3:77939511-77939530 None:intergenic 5.0%
!!! ATTAATTTTTTATCATAAAA+AGG + Chr3:77937410-77937429 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTACT+AGG - Chr3:77938741-77938760 MsG0380016018.01.T01:intron 5.0%
ACTTTGACTGGGTCGATGAC+CGG + Chr3:77939234-77939253 None:intergenic 50.0%
AGACGCCTAGAATCTGTTGC+AGG + Chr3:77937237-77937256 None:intergenic 50.0%
AGGGGGAGATACTCTTAGGA+TGG - Chr3:77937809-77937828 MsG0380016018.01.T01:intron 50.0%
ATGTCTGCAAGCAGGATGTC+CGG - Chr3:77937916-77937935 MsG0380016018.01.T01:intron 50.0%
ATTAGAGAAGGCAGTTGGGG+GGG + Chr3:77939073-77939092 None:intergenic 50.0%
CATGGAAGACATGTAGAGGG+TGG - Chr3:77937021-77937040 MsG0380016018.01.T01:intron 50.0%
GACATGTGATGTCTGCAAGC+AGG - Chr3:77937908-77937927 MsG0380016018.01.T01:intron 50.0%
GAGTGTCCTCTTCTTCTGAG+AGG + Chr3:77936239-77936258 None:intergenic 50.0%
TAAAGCGGCGCATTCGTTAC+CGG - Chr3:77936963-77936982 MsG0380016018.01.T01:intron 50.0%
TATGCATGCGGGACCAGAAA+AGG - Chr3:77938454-77938473 MsG0380016018.01.T01:intron 50.0%
TCAAGTCCAGGTTCCACTAG+AGG - Chr3:77936727-77936746 MsG0380016018.01.T01:intron 50.0%
TGCAACAGATTCTAGGCGTC+TGG - Chr3:77937236-77937255 MsG0380016018.01.T01:CDS 50.0%
! AAGCCTTTTCCCACTGAGTG+GGG - Chr3:77938502-77938521 MsG0380016018.01.T01:intron 50.0%
! AATGAAATGGCGAGAGCACG+TGG + Chr3:77939385-77939404 None:intergenic 50.0%
! ATGAAATGGCGAGAGCACGT+GGG + Chr3:77939384-77939403 None:intergenic 50.0%
! CAAGCCTTTTCCCACTGAGT+GGG - Chr3:77938501-77938520 MsG0380016018.01.T01:intron 50.0%
! TTGGTAGAATGTGGCCTTGG+TGG + Chr3:77936757-77936776 None:intergenic 50.0%
!! AGGATGGACTGCAGTTGCAA+AGG - Chr3:77937825-77937844 MsG0380016018.01.T01:intron 50.0%
CCACAGCCAGCAACTACTGA+TGG - Chr3:77937279-77937298 MsG0380016018.01.T01:intron 55.0%
CCACTCAGTGGGAAAAGGCT+TGG + Chr3:77938503-77938522 None:intergenic 55.0%
CGGAAGGGGGAGATACTCTT+AGG - Chr3:77937805-77937824 MsG0380016018.01.T01:intron 55.0%
GTATGCCGAACAACAGTCGG+CGG + Chr3:77937974-77937993 None:intergenic 55.0%
TTAGAGAAGGCAGTTGGGGG+GGG + Chr3:77939072-77939091 None:intergenic 55.0%
TTCCTCTGCCTCTAGTGCTC+TGG - Chr3:77938639-77938658 MsG0380016018.01.T01:CDS 55.0%
TTTGGTGGAGCTTGCGGAAG+GGG - Chr3:77937791-77937810 MsG0380016018.01.T01:intron 55.0%
! CCAAGCCTTTTCCCACTGAG+TGG - Chr3:77938500-77938519 MsG0380016018.01.T01:intron 55.0%
! CCATCAGTAGTTGCTGGCTG+TGG + Chr3:77937282-77937301 None:intergenic 55.0%
! CTAGTCCGCCGACTGTTGTT+CGG - Chr3:77937966-77937985 MsG0380016018.01.T01:intron 55.0%
! CTTTTCCCACTGAGTGGGGT+CGG - Chr3:77938506-77938525 MsG0380016018.01.T01:intron 55.0%
! GAGGATAGCCAGAGCACTAG+AGG + Chr3:77938650-77938669 None:intergenic 55.0%
! GCGCCGCTTTACTCGATGAA+GGG + Chr3:77936954-77936973 None:intergenic 55.0%
! GTGGGCCCAAATCTGAAACC+TGG + Chr3:77939366-77939385 None:intergenic 55.0%
! GTTTGGTGGAGCTTGCGGAA+GGG - Chr3:77937790-77937809 MsG0380016018.01.T01:intron 55.0%
! TGCGCCGCTTTACTCGATGA+AGG + Chr3:77936955-77936974 None:intergenic 55.0%
! TGTTTGGTGGAGCTTGCGGA+AGG - Chr3:77937789-77937808 MsG0380016018.01.T01:intron 55.0%
ACTGAGTGGGGTCGGCTACA+TGG - Chr3:77938514-77938533 MsG0380016018.01.T01:intron 60.0%
ATGTAGCCGACCCCACTCAG+TGG + Chr3:77938515-77938534 None:intergenic 60.0%
CCACTAGAGGACTGCCACCA+AGG - Chr3:77936740-77936759 MsG0380016018.01.T01:intron 60.0%
CGACCCCACTCAGTGGGAAA+AGG + Chr3:77938508-77938527 None:intergenic 60.0%
GGCAGTCCTCTAGTGGAACC+TGG + Chr3:77936736-77936755 None:intergenic 60.0%
TAGAGAAGGCAGTTGGGGGG+GGG + Chr3:77939071-77939090 None:intergenic 60.0%
TGTAGCCGACCCCACTCAGT+GGG + Chr3:77938514-77938533 None:intergenic 60.0%
TTGGTGGAGCTTGCGGAAGG+GGG - Chr3:77937792-77937811 MsG0380016018.01.T01:intron 60.0%
! AGCCAGAGCACTAGAGGCAG+AGG + Chr3:77938644-77938663 None:intergenic 60.0%
! CCTTGGTGGCAGTCCTCTAG+TGG + Chr3:77936743-77936762 None:intergenic 60.0%
AGAGAAGGCAGTTGGGGGGG+GGG + Chr3:77939070-77939089 None:intergenic 65.0%
GACTGGGTCGATGACCGGTC+CGG + Chr3:77939229-77939248 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77935946 77940681 77935946 ID=MsG0380016018.01;Name=MsG0380016018.01
Chr3 mRNA 77935946 77940681 77935946 ID=MsG0380016018.01.T01;Parent=MsG0380016018.01;Name=MsG0380016018.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.62|0.44|1|1|1|9|235|440
Chr3 exon 77935946 77936396 77935946 ID=MsG0380016018.01.T01:exon:18275;Parent=MsG0380016018.01.T01
Chr3 exon 77936473 77936552 77936473 ID=MsG0380016018.01.T01:exon:18274;Parent=MsG0380016018.01.T01
Chr3 exon 77937170 77937260 77937170 ID=MsG0380016018.01.T01:exon:18273;Parent=MsG0380016018.01.T01
Chr3 exon 77937445 77937507 77937445 ID=MsG0380016018.01.T01:exon:18272;Parent=MsG0380016018.01.T01
Chr3 exon 77938609 77938697 77938609 ID=MsG0380016018.01.T01:exon:18271;Parent=MsG0380016018.01.T01
Chr3 exon 77938781 77938891 77938781 ID=MsG0380016018.01.T01:exon:18270;Parent=MsG0380016018.01.T01
Chr3 exon 77939291 77939465 77939291 ID=MsG0380016018.01.T01:exon:18269;Parent=MsG0380016018.01.T01
Chr3 exon 77939571 77939993 77939571 ID=MsG0380016018.01.T01:exon:18268;Parent=MsG0380016018.01.T01
Chr3 exon 77940607 77940681 77940607 ID=MsG0380016018.01.T01:exon:18267;Parent=MsG0380016018.01.T01
Chr3 CDS 77940607 77940681 77940607 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77939571 77939993 77939571 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77939291 77939465 77939291 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77938781 77938891 77938781 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77938609 77938697 77938609 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77937445 77937507 77937445 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77937170 77937260 77937170 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77936473 77936552 77936473 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 CDS 77936181 77936396 77936181 ID=MsG0380016018.01.T01:cds;Parent=MsG0380016018.01.T01
Chr3 three_prime_UTR 77935946 77936180 77935946 ID=MsG0380016018.01.T01:three_prime_utr;Parent=MsG0380016018.01.T01
Gene Sequence

>MsG0380016018.01.T01

ATGGAGAAGGAAGGTGTTGAACTTCAAACTGATGCAGTTCCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGGCCTAGTCTTTCATCTCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCATCTTCTACCAAGACAGATGGTCCTACATTATCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAGTCCTCTATGAAAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCAGAAGATTCTGAAAAGAGAGTTTTGATTGTTTCTGATACTTTATCATCAGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCTCATTCACTTAATAAGATTCTGTTCCCTTCATCGAGTAAAGCGGCGCATTCGTTACCGGTTACTCCAATTGCTAATTCAGGTGCAGAGAATGTACATGGAAGACATGTAGAGGGTGGTTCTGATTCAAATAAATCGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTCAAAGCCGCTAATTTAAGACCTGCAACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGCAAGACCACAGCCAGCAACTACTGATGGTGTTTCAACCCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCCGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGCAAAGGATGTCCGGAATCTTCCAGTAACACTCTTGAAATTTCTAGTCCGCCGACTGTTGTTCGGCATACGTTGAATGCATCACAACAGAGAGCAGATGTACCAGTACTTGTCTTGGTTAGCAAGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCAGATTTGGGCCCACGTGCTCTCGCCATTTCATTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTATCATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCATTTGTCATCCTGTTTGCGCATATATTCTATTCCATACTTAATGTGAGTGCGGTTTTCTCGGTTCTTCTTTCAACATTCACTGGATTTGGGATTGCAATCAGCATGAATTCTCTCCTAATGGAATATATCAGATGGGAAACAAATAGGCAGATTCGATCTTCTAATCAACATATTATTTCGAGTCAGCAGCAGCAAGAAACTCAGAGACAACCACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA

Protein sequence

>MsG0380016018.01.T01

MEKEGVELQTDAVPMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMKNLLSDRSFRTKTCSEDSEKRVLIVSDTLSSDNGPLDNKPSTSRSHSLNKILFPSSSKAAHSLPVTPIANSGAENVHGRHVEGGSDSNKSKVNKHMTRSFSVPVNVKAANLRPATDSRRLVRVISARPQPATTDGVSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGCPESSSNTLEISSPPTVVRHTLNASQQRADVPVLVLVSKLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSAVFSVLLSTFTGFGIAISMNSLLMEYIRWETNRQIRSSNQHIISSQQQQETQRQPHQLQRMQQEQHQ*