AlfalfaGEDB | MsG0880044179.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044179.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044179.01.T01	KHN33981.1	89.011	91	10	1	91	82	172	7.06E-52	177
MsG0880044179.01.T02	RHN40712.1	95	80	4	1	80	20	99	1.43E-48	161
MsG0880044179.01.T03	RHN40712.1	94.444	72	4	1	72	28	99	1.00E-41	144

Showing 1 to 3 of 3 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044179.01.T01	Q9SXB8	72.527	91	25	1	91	600	690	8.52E-41	147
MsG0880044179.01.T02	Q9SXB8	72.5	80	22	2	81	611	690	1.10E-34	130
MsG0880044179.01.T03	Q9SXB8	76.712	73	17	1	73	618	690	3.04E-33	125

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044179.01.T01	A0A0B2RH88	89.011	91	10	1	91	82	172	3.37e-52	177
MsG0880044179.01.T01	G7L990	94.505	91	5	1	91	550	640	5.24e-51	183
MsG0880044179.01.T03	A0A396GHU4	94.444	72	4	1	72	28	99	4.79e-42	144

Showing 1 to 3 of 3 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380014501.01	MsG0880044179.01	0.814648	1.384493e-51	9.342700e-49

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044179.01.T01	MTR_8g051600	94.505	91	5	0	1	91	550	640	1.33e-54	183
MsG0880044179.01.T01	MTR_8g052570	90.110	91	9	0	1	91	139	229	2.88e-54	175
MsG0880044179.01.T01	MTR_8g052517	90.110	91	9	0	1	91	139	229	2.88e-54	175
MsG0880044179.01.T01	MTR_8g052120	66.906	139	34	3	1	127	532	670	3.35e-52	176
MsG0880044179.01.T01	MTR_8g052190	89.011	91	10	0	1	91	554	644	1.46e-51	175
MsG0880044179.01.T01	MTR_8g052190	89.011	91	10	0	1	91	553	643	1.49e-51	175
MsG0880044179.01.T01	MTR_8g052420	90.110	91	9	0	1	91	542	632	1.82e-51	174
MsG0880044179.01.T01	MTR_8g051540	85.714	91	13	0	1	91	557	647	4.07e-51	174
MsG0880044179.01.T01	MTR_8g052080	90.110	91	9	0	1	91	562	652	5.56e-51	173
MsG0880044179.01.T01	MTR_8g052050	89.011	91	10	0	1	91	561	651	7.92e-51	173

Showing 1 to 10 of 1,513 entries

Previous1 2 3 4 5…152Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044179.01.T01	AT3G16030	72.527	91	25	1	91	480	570	1.57e-42	149
MsG0880044179.01.T01	AT1G11330	72.527	91	25	1	91	598	688	8.66e-42	147
MsG0880044179.01.T01	AT1G11330	72.527	91	25	1	91	600	690	8.69e-42	147
MsG0880044179.01.T01	AT1G11330	72.527	91	25	1	91	600	690	8.81e-42	147
MsG0880044179.01.T01	AT3G16030	72.527	91	25	1	91	624	714	2.26e-41	146
MsG0880044179.01.T01	AT3G16030	72.527	91	25	1	91	603	693	2.26e-41	146
MsG0880044179.01.T01	AT3G16030	70.968	93	27	1	93	624	716	2.63e-41	146
MsG0880044179.01.T01	AT1G11300	72.527	91	25	1	91	570	660	3.36e-41	146
MsG0880044179.01.T01	AT1G11300	72.527	91	25	1	91	585	675	3.44e-41	146
MsG0880044179.01.T01	AT3G16030	73.333	90	24	1	90	624	713	3.58e-41	145

Showing 1 to 10 of 1,500 entries

Previous1 2 3 4 5…150Next

Find 17 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATTGTTAAAGCTAAATT+TGG	0.134098	8:+37096192	None:intergenic
AATCGGTAGGAAATACCAAC+AGG	0.502551	8:-37096391	MsG0880044179.01.T01:CDS
AATGTTCACACAACAGGAAT+CGG	0.489467	8:-37096408	MsG0880044179.01.T01:CDS
AGATTGTTAAAGCTAAATTT+GGG	0.413587	8:+37096193	None:intergenic
AGCTTGGATTTCTATATATT+TGG	0.156012	8:-37096968	MsG0880044179.01.T01:intron
ATAATAGAAGGAATTGCTCA+AGG	0.593195	8:-37096548	MsG0880044179.01.T01:CDS
ATACATGCCAAACAAAAGCT+TGG	0.544323	8:-37096984	None:intergenic
ATATGTCCCAACAATCCTGT+TGG	0.601459	8:+37096376	None:intergenic
CAAGAAGGAAATGTCTAGAT+TGG	0.419976	8:-37096586	MsG0880044179.01.T01:CDS
CAGCGTTTCAACATAATAGA+AGG	0.403945	8:-37096560	MsG0880044179.01.T01:CDS

Showing 1 to 10 of 17 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAATAGAAGGAATTGCTCA+AGG	-	Chr8:37096637-37096656	MsG0880044179.01.T01:intron	30.0%
AATGTTCACACAACAGGAAT+CGG	-	Chr8:37096777-37096796	MsG0880044179.01.T01:intron	35.0%
CAAGAAGGAAATGTCTAGAT+TGG	-	Chr8:37096599-37096618	MsG0880044179.01.T01:intron	35.0%
CAGCGTTTCAACATAATAGA+AGG	-	Chr8:37096625-37096644	MsG0880044179.01.T01:intron	35.0%
GAAATACCAACAGGATTGTT+GGG	-	Chr8:37096803-37096822	MsG0880044179.01.T01:intron	35.0%
AATCGGTAGGAAATACCAAC+AGG	-	Chr8:37096794-37096813	MsG0880044179.01.T01:intron	40.0%
ATATGTCCCAACAATCCTGT+TGG	+	Chr8:37096812-37096831	None:intergenic	40.0%
CTTGGGAAGATTCTACAAGA+AGG	-	Chr8:37096584-37096603	MsG0880044179.01.T01:CDS	40.0%
GGAAATACCAACAGGATTGT+TGG	-	Chr8:37096802-37096821	MsG0880044179.01.T01:intron	40.0%
TTTACAGCGTGTTCGATCTA+TGG	-	Chr8:37096382-37096401	MsG0880044179.01.T01:CDS	40.0%

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	37096205	37097002	37096205	ID=MsG0880044179.01;Name=MsG0880044179.01
Chr8	mRNA	37096205	37097002	37096205	ID=MsG0880044179.01.T01;Parent=MsG0880044179.01;Name=MsG0880044179.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|0\|0\|2\|0\|147
Chr8	exon	37096969	37097002	37096969	ID=MsG0880044179.01.T01:exon:3088;Parent=MsG0880044179.01.T01
Chr8	exon	37096205	37096614	37096205	ID=MsG0880044179.01.T01:exon:3089;Parent=MsG0880044179.01.T01
Chr8	CDS	37096969	37097002	37096969	ID=MsG0880044179.01.T01:cds;Parent=MsG0880044179.01.T01
Chr8	CDS	37096205	37096614	37096205	ID=MsG0880044179.01.T01:cds;Parent=MsG0880044179.01.T01
Chr8	mRNA	37096205	37096618	37096205	ID=MsG0880044179.01.T02;Parent=MsG0880044179.01;Name=MsG0880044179.01.T02;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|137
Chr8	exon	37096205	37096618	37096205	ID=MsG0880044179.01.T02:exon:3090;Parent=MsG0880044179.01.T02
Chr8	CDS	37096205	37096618	37096205	ID=MsG0880044179.01.T02:cds;Parent=MsG0880044179.01.T02
Chr8	mRNA	37096205	37096594	37096205	ID=MsG0880044179.01.T03;Parent=MsG0880044179.01;Name=MsG0880044179.01.T03;_AED=0.52;_eAED=0.52;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|129
Chr8	exon	37096205	37096594	37096205	ID=MsG0880044179.01.T03:exon:3091;Parent=MsG0880044179.01.T03
Chr8	CDS	37096205	37096594	37096205	ID=MsG0880044179.01.T03:cds;Parent=MsG0880044179.01.T03
Chr8	mRNA	37096530	37096598	37096530	ID=MsG0880044179.01.T04;Parent=MsG0880044179.01;Name=MsG0880044179.01.T04;_AED=0.47;_eAED=1.00;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|22
Chr8	exon	37096530	37096598	37096530	ID=MsG0880044179.01.T04:exon:3092;Parent=MsG0880044179.01.T04
Chr8	CDS	37096530	37096598	37096530	ID=MsG0880044179.01.T04:cds;Parent=MsG0880044179.01.T04

Gene Sequence

>MsG0880044179.01.T01

ATGCCAAACAAAAGCTTGGATTTCTATATATTTGATTCTACAAGAAGGAAATGTCTAGATTGGAAGCAGCGTTTCAACATAATAGAAGGAATTGCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCGAGAATGTTCACACAACAGGAATCGGTAGGAAATACCAACAGGATTGTTGGGACATATATAGTGAGTGTTCTAAACTTTATTGATGATTACTGTTATACCCTAATTTTGGACCTAAAAATACTTGTTCAAAATTTCTTTCATCTTGATACATGTCTATCACTCTTGAAGAATTGCCAATTTGCTATTGTTTATACTGACATTTTACTCTGCTTTCTCTCCCAAATTTAG

>MsG0880044179.01.T04

ATGTCTAGATTGGAAGCAGCGTTTCAACATAATAGAAGGAATTGCTCAAGGATTACTCTATCTTCATAA

>MsG0880044179.01.T02

GAAGATTCTACAAGAAGGAAATGTCTAGATTGGAAGCAGCGTTTCAACATAATAGAAGGAATTGCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCGAGAATGTTCACACAACAGGAATCGGTAGGAAATACCAACAGGATTGTTGGGACATATATAGTGAGTGTTCTAAACTTTATTGATGATTACTGTTATACCCTAATTTTGGACCTAAAAATACTTGTTCAAAATTTCTTTCATCTTGATACATGTCTATCACTCTTGAAGAATTGCCAATTTGCTATTGTTTATACTGACATTTTACTCTGCTTTCTCTCCCAAATTTAG

>MsG0880044179.01.T03

CTAGATTGGAAGCAGCGTTTCAACATAATAGAAGGAATTGCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCTAGCAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGCATGGCGAGAATGTTCACACAACAGGAATCGGTAGGAAATACCAACAGGATTGTTGGGACATATATAGTGAGTGTTCTAAACTTTATTGATGATTACTGTTATACCCTAATTTTGGACCTAAAAATACTTGTTCAAAATTTCTTTCATCTTGATACATGTCTATCACTCTTGAAGAATTGCCAATTTGCTATTGTTTATACTGACATTTTACTCTGCTTTCTCTCCCAAATTTAG

Protein sequence

>MsG0880044179.01.T01

MPNKSLDFYIFDSTRRKCLDWKQRFNIIEGIAQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESVGNTNRIVGTYIVSVLNFIDDYCYTLILDLKILVQNFFHLDTCLSLLKNCQFAIVYTDILLCFLSQI*

>MsG0880044179.01.T04

MSRLEAAFQHNRRNCSRITLSS*

>MsG0880044179.01.T02

EDSTRRKCLDWKQRFNIIEGIAQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESVGNTNRIVGTYIVSVLNFIDDYCYTLILDLKILVQNFFHLDTCLSLLKNCQFAIVYTDILLCFLSQI*

>MsG0880044179.01.T03

LDWKQRFNIIEGIAQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARMFTQQESVGNTNRIVGTYIVSVLNFIDDYCYTLILDLKILVQNFFHLDTCLSLLKNCQFAIVYTDILLCFLSQI*