Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044451.01.T01 | XP_013445507.1 | 95.444 | 439 | 11 | 5 | 1 | 436 | 1 | 433 | 0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044451.01.T01 | Q9MAH8 | 46.226 | 424 | 151 | 16 | 34 | 436 | 24 | 391 | 2.33E-94 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044451.01.T01 | A0A072TRR1 | 95.444 | 439 | 11 | 5 | 1 | 436 | 1 | 433 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011578.01 | MsG0880044451.01 | -0.816502 | 5.350070e-52 | 3.797402e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044451.01.T01 | MTR_8g463380 | 95.444 | 439 | 11 | 5 | 1 | 436 | 1 | 433 | 0.0 | 845 |
| MsG0880044451.01.T01 | MTR_2g090960 | 41.985 | 393 | 143 | 12 | 42 | 427 | 7 | 321 | 7.67e-78 | 245 |
| MsG0880044451.01.T01 | MTR_4g079580 | 37.405 | 393 | 153 | 14 | 42 | 419 | 5 | 319 | 7.22e-56 | 188 |
| MsG0880044451.01.T01 | MTR_2g078200 | 87.059 | 85 | 11 | 0 | 42 | 126 | 3 | 87 | 5.96e-48 | 166 |
| MsG0880044451.01.T01 | MTR_2g078200 | 48.148 | 135 | 57 | 5 | 311 | 436 | 164 | 294 | 2.70e-14 | 73.6 |
| MsG0880044451.01.T01 | MTR_7g015010 | 61.842 | 76 | 29 | 0 | 53 | 128 | 51 | 126 | 9.12e-26 | 107 |
| MsG0880044451.01.T01 | MTR_4g109660 | 63.235 | 68 | 25 | 0 | 53 | 120 | 50 | 117 | 2.81e-22 | 97.1 |
| MsG0880044451.01.T01 | MTR_6g015350 | 64.706 | 68 | 24 | 0 | 53 | 120 | 43 | 110 | 2.20e-21 | 95.1 |
| MsG0880044451.01.T01 | MTR_3g026050 | 58.824 | 68 | 28 | 0 | 53 | 120 | 51 | 118 | 7.96e-21 | 94.0 |
| MsG0880044451.01.T01 | MTR_4g111935 | 43.299 | 97 | 52 | 2 | 37 | 132 | 112 | 206 | 9.15e-17 | 82.0 |
| MsG0880044451.01.T01 | MTR_1g103380 | 55.738 | 61 | 27 | 0 | 58 | 118 | 200 | 260 | 1.95e-16 | 81.6 |
| MsG0880044451.01.T01 | MTR_6g017055 | 50.769 | 65 | 32 | 0 | 53 | 117 | 120 | 184 | 8.54e-16 | 79.3 |
| MsG0880044451.01.T01 | MTR_7g018500 | 56.140 | 57 | 25 | 0 | 61 | 117 | 122 | 178 | 8.76e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044451.01.T01 | AT1G53230 | 46.226 | 424 | 151 | 16 | 34 | 436 | 24 | 391 | 2.38e-95 | 292 |
| MsG0880044451.01.T01 | AT1G53230 | 46.226 | 424 | 151 | 16 | 34 | 436 | 24 | 391 | 2.38e-95 | 292 |
| MsG0880044451.01.T01 | AT3G15030 | 46.799 | 453 | 143 | 20 | 32 | 436 | 18 | 420 | 7.54e-95 | 292 |
| MsG0880044451.01.T01 | AT3G15030 | 46.799 | 453 | 143 | 20 | 32 | 436 | 18 | 420 | 7.54e-95 | 292 |
| MsG0880044451.01.T01 | AT3G15030 | 46.799 | 453 | 143 | 20 | 32 | 436 | 18 | 420 | 7.54e-95 | 292 |
| MsG0880044451.01.T01 | AT3G15030 | 46.799 | 453 | 143 | 20 | 32 | 436 | 18 | 420 | 7.54e-95 | 292 |
| MsG0880044451.01.T01 | AT2G31070 | 44.255 | 235 | 71 | 7 | 33 | 256 | 3 | 188 | 9.79e-46 | 162 |
| MsG0880044451.01.T01 | AT4G18390 | 70.588 | 68 | 20 | 0 | 53 | 120 | 36 | 103 | 3.42e-26 | 109 |
| MsG0880044451.01.T01 | AT4G18390 | 70.588 | 68 | 20 | 0 | 53 | 120 | 36 | 103 | 3.42e-26 | 109 |
| MsG0880044451.01.T01 | AT3G02150 | 68.116 | 69 | 22 | 0 | 53 | 121 | 68 | 136 | 1.51e-24 | 102 |
| MsG0880044451.01.T01 | AT3G02150 | 68.116 | 69 | 22 | 0 | 53 | 121 | 68 | 136 | 3.32e-24 | 103 |
| MsG0880044451.01.T01 | AT1G30210 | 63.768 | 69 | 25 | 0 | 52 | 120 | 43 | 111 | 1.39e-22 | 98.2 |
| MsG0880044451.01.T01 | AT1G30210 | 63.768 | 69 | 25 | 0 | 52 | 120 | 43 | 111 | 1.39e-22 | 98.2 |
| MsG0880044451.01.T01 | AT5G60970 | 60.294 | 68 | 27 | 0 | 53 | 120 | 57 | 124 | 7.36e-22 | 96.7 |
| MsG0880044451.01.T01 | AT5G08070 | 58.824 | 68 | 28 | 0 | 53 | 120 | 27 | 94 | 2.86e-21 | 92.8 |
| MsG0880044451.01.T01 | AT5G08070 | 58.824 | 68 | 28 | 0 | 53 | 120 | 27 | 94 | 2.86e-21 | 92.8 |
| MsG0880044451.01.T01 | AT1G68800 | 51.471 | 68 | 33 | 0 | 55 | 122 | 108 | 175 | 2.08e-19 | 89.7 |
| MsG0880044451.01.T01 | AT1G68800 | 51.471 | 68 | 33 | 0 | 55 | 122 | 108 | 175 | 2.25e-19 | 89.7 |
| MsG0880044451.01.T01 | AT1G67260 | 52.113 | 71 | 34 | 0 | 54 | 124 | 82 | 152 | 9.57e-19 | 87.4 |
| MsG0880044451.01.T01 | AT1G67260 | 52.113 | 71 | 34 | 0 | 54 | 124 | 82 | 152 | 9.57e-19 | 87.4 |
| MsG0880044451.01.T01 | AT1G67260 | 52.113 | 71 | 34 | 0 | 54 | 124 | 82 | 152 | 1.30e-18 | 87.4 |
| MsG0880044451.01.T01 | AT3G18550 | 50.000 | 64 | 32 | 0 | 55 | 118 | 144 | 207 | 1.09e-13 | 73.2 |
| MsG0880044451.01.T01 | AT3G18550 | 50.000 | 64 | 32 | 0 | 55 | 118 | 144 | 207 | 1.09e-13 | 73.2 |
| MsG0880044451.01.T01 | AT3G18550 | 50.000 | 64 | 32 | 0 | 55 | 118 | 144 | 207 | 1.16e-13 | 72.8 |
| MsG0880044451.01.T01 | AT3G18550 | 50.000 | 64 | 32 | 0 | 55 | 118 | 144 | 207 | 1.17e-13 | 72.8 |
Find 133 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACCAAGGGAGGAGTTTC+CGG | 0.255572 | 8:-42297061 | None:intergenic |
| TCGTATACCAGCACGAATTC+AGG | 0.286283 | 8:+42297449 | MsG0880044451.01.T01:CDS |
| GTCTCTGGTGGTGGATTCTC+AGG | 0.305280 | 8:+42297423 | MsG0880044451.01.T01:CDS |
| ATCCATCAGGCTTCTGTCTC+TGG | 0.306407 | 8:+42297408 | MsG0880044451.01.T01:CDS |
| GCACCGGCGTTTGGCGGTTA+TGG | 0.331523 | 8:+42297261 | MsG0880044451.01.T01:CDS |
| GACGTCGTGGGCGTTTCAAC+TGG | 0.345584 | 8:-42296877 | None:intergenic |
| TCCGCTGCCGCTGATTCTCT+TGG | 0.351084 | 8:-42296314 | None:intergenic |
| AGCGGCAGCGGAGGAGGAGG+AGG | 0.358889 | 8:+42296325 | MsG0880044451.01.T01:CDS |
| TGGTGGCTCTGAAGCATAAT+AGG | 0.365493 | 8:-42296997 | None:intergenic |
| ATCAGCGGCAGCGGAGGAGG+AGG | 0.374612 | 8:+42296322 | MsG0880044451.01.T01:CDS |
| GGCAGCGGAGGAGGAGGAGG+AGG | 0.377059 | 8:+42296328 | MsG0880044451.01.T01:CDS |
| AGCCAATCGACTGCTTTACT+TGG | 0.379997 | 8:-42296520 | None:intergenic |
| GAGTTCATCGATAGCAGATT+TGG | 0.381283 | 8:-42296554 | None:intergenic |
| GGAAGCAGAGGACGGTTTAT+CGG | 0.389422 | 8:-42297496 | None:intergenic |
| AGTACACCGGCACCGGCGTT+TGG | 0.392086 | 8:+42297252 | MsG0880044451.01.T01:CDS |
| TGACTGGTAGAAGCGGTTAC+TGG | 0.399280 | 8:-42296691 | None:intergenic |
| GGTCACATTGTCCGTTCAAC+AGG | 0.417152 | 8:+42296376 | MsG0880044451.01.T01:CDS |
| TGTTGTCCACCGGAGATTGC+CGG | 0.418132 | 8:-42296666 | None:intergenic |
| CTGTTGCTGTTCCTGTGTGC+TGG | 0.422018 | 8:-42296246 | None:intergenic |
| CAGGCTTCTGTCTCTGGTGG+TGG | 0.423247 | 8:+42297414 | MsG0880044451.01.T01:CDS |
| AGAATCAGCGGCAGCGGAGG+AGG | 0.424143 | 8:+42296319 | MsG0880044451.01.T01:CDS |
| GGTTGTTGTTGTTGTGGTGG+TGG | 0.431926 | 8:-42297026 | None:intergenic |
| AGAGTCGTACGCGGCGGTCA+CGG | 0.437341 | 8:-42296441 | None:intergenic |
| AACTCGCTCACCTCCCTGCT+TGG | 0.437620 | 8:+42296572 | MsG0880044451.01.T01:CDS |
| AGGAGGAGGAGGAGAAATCG+TGG | 0.443308 | 8:+42296342 | MsG0880044451.01.T01:CDS |
| GGTAACAGTGGCCATGGTGC+TGG | 0.446213 | 8:+42297219 | MsG0880044451.01.T01:CDS |
| ACGAACTGAAGGATTGTAAC+TGG | 0.446835 | 8:-42297316 | None:intergenic |
| GAGTCGTACGCGGCGGTCAC+GGG | 0.446966 | 8:-42296440 | None:intergenic |
| TTCGCCGGAAACTCCTCCCT+TGG | 0.457148 | 8:+42297057 | MsG0880044451.01.T01:CDS |
| TGTTGTGGTGGTGGTTGTCA+TGG | 0.458311 | 8:-42297017 | None:intergenic |
| CTGGTGCTGCTCAGACCACA+AGG | 0.469242 | 8:-42297106 | None:intergenic |
| ACAGAAGCCTGATGGATCAT+TGG | 0.470560 | 8:-42297402 | None:intergenic |
| GTTCCTCTTGATGATGCTGC+TGG | 0.472908 | 8:-42297125 | None:intergenic |
| ACACCGGCACCGGCGTTTGG+CGG | 0.478717 | 8:+42297255 | MsG0880044451.01.T01:CDS |
| AGAGGCGGAGATCTTGCTGC+TGG | 0.481925 | 8:-42296954 | None:intergenic |
| GTAGCTGTGGGGTTCCAAGC+AGG | 0.483404 | 8:-42296586 | None:intergenic |
| TAATGCCGCTGAGCGGTGAC+TGG | 0.483807 | 8:-42296707 | None:intergenic |
| ATATTCGCCGTCGCCATTGA+AGG | 0.485547 | 8:-42297351 | None:intergenic |
| ACAATCCTTCAGTTCGTGCT+TGG | 0.487224 | 8:+42297322 | MsG0880044451.01.T01:CDS |
| TCCTTCTCAACAACAACAGT+TGG | 0.490799 | 8:+42296762 | MsG0880044451.01.T01:CDS |
| CGTATACCAGCACGAATTCA+GGG | 0.492711 | 8:+42297450 | MsG0880044451.01.T01:CDS |
| GCCGTTCGAGAGAGTAAATC+CGG | 0.495710 | 8:-42296922 | None:intergenic |
| TCTTTCGCCAATGATCCATC+AGG | 0.495748 | 8:+42297395 | MsG0880044451.01.T01:CDS |
| TCCAAGAGAATCAGCGGCAG+CGG | 0.496376 | 8:+42296313 | MsG0880044451.01.T01:CDS |
| TCCAACTGTTGTTGTTGAGA+AGG | 0.501218 | 8:-42296763 | None:intergenic |
| GGTTACGAAGGTGGTGGAAG+TGG | 0.502122 | 8:+42297078 | MsG0880044451.01.T01:CDS |
| GCGGTCACGGGGACCTTTCG+CGG | 0.503457 | 8:-42296428 | None:intergenic |
| AAGAGAATCAGCGGCAGCGG+AGG | 0.505536 | 8:+42296316 | MsG0880044451.01.T01:CDS |
| GCACTTGGTTGTTGTTGTTG+TGG | 0.512670 | 8:-42297032 | None:intergenic |
| AATGTTTCACCGGCAATCTC+CGG | 0.513568 | 8:+42296657 | MsG0880044451.01.T01:CDS |
| CTTGGTTGTTGTTGTTGTGG+TGG | 0.513896 | 8:-42297029 | None:intergenic |
| GGAGAAATCGTGGAGGTACA+AGG | 0.518138 | 8:+42296352 | MsG0880044451.01.T01:CDS |
| TAACCGCCAAACGCCGGTGC+CGG | 0.524727 | 8:-42297258 | None:intergenic |
| AGTTTCCGGCGAAAAGCACT+TGG | 0.528802 | 8:-42297047 | None:intergenic |
| TCCCTTGGTTACGAAGGTGG+TGG | 0.532396 | 8:+42297072 | MsG0880044451.01.T01:CDS |
| TCTTCACCCTGAATTCGTGC+TGG | 0.532864 | 8:-42297456 | None:intergenic |
| GGTCTTTGCGTCCTGTTGAA+CGG | 0.539979 | 8:-42296387 | None:intergenic |
| TGCTTGGATAGATCCTTCAA+TGG | 0.540229 | 8:+42297338 | MsG0880044451.01.T01:CDS |
| TGTGTTCAGTACACCGGCAC+CGG | 0.543423 | 8:+42297245 | MsG0880044451.01.T01:CDS |
| CGGCAGATTGCATAGAATGA+TGG | 0.543570 | 8:+42297155 | MsG0880044451.01.T01:CDS |
| GAAGGAAATTGTTGTTCTTG+TGG | 0.545015 | 8:-42296745 | None:intergenic |
| AGGATTGTAACTGGACTGAA+GGG | 0.547857 | 8:-42297307 | None:intergenic |
| CACCAGAGACAGAAGCCTGA+TGG | 0.548735 | 8:-42297410 | None:intergenic |
| GTTACTGGATTGTTGTCCAC+CGG | 0.554367 | 8:-42296676 | None:intergenic |
| GGCCAAGTAAAGCAGTCGAT+TGG | 0.560622 | 8:+42296518 | MsG0880044451.01.T01:CDS |
| ACAACACACGACCAGCACAC+AGG | 0.563376 | 8:+42296235 | MsG0880044451.01.T01:CDS |
| GATTGCATAGAATGATGGCT+TGG | 0.567846 | 8:+42297160 | MsG0880044451.01.T01:CDS |
| GCGAGAGTCGGAGGAAGCAG+AGG | 0.568701 | 8:-42297508 | None:intergenic |
| TAGCTGTGGGGTTCCAAGCA+GGG | 0.568717 | 8:-42296585 | None:intergenic |
| AGTAAAGTATGCACCGCGAA+AGG | 0.570958 | 8:+42296415 | MsG0880044451.01.T01:CDS |
| AAACAAATGAAATGTTTCAC+CGG | 0.571359 | 8:+42296647 | MsG0880044451.01.T01:CDS |
| GTTGAAGAGCATGTAGCTGT+GGG | 0.571599 | 8:-42296598 | None:intergenic |
| GCCGCTGATTCTCTTGGACG+AGG | 0.572452 | 8:-42296308 | None:intergenic |
| AACTCCTCCCTTGGTTACGA+AGG | 0.573109 | 8:+42297066 | MsG0880044451.01.T01:CDS |
| CATCAAGAGGAACATGATAA+CGG | 0.573201 | 8:+42297135 | MsG0880044451.01.T01:CDS |
| TTCCACCACCTTCGTAACCA+AGG | 0.573421 | 8:-42297074 | None:intergenic |
| AAGGATTGTAACTGGACTGA+AGG | 0.573483 | 8:-42297308 | None:intergenic |
| AGTCGTACGCGGCGGTCACG+GGG | 0.577670 | 8:-42296439 | None:intergenic |
| GTAGAATTGAATCGCAGTGT+GGG | 0.579117 | 8:-42296467 | None:intergenic |
| GAGGCGGAGATCTTGCTGCT+GGG | 0.582996 | 8:-42296953 | None:intergenic |
| TCCTCCCTTGGTTACGAAGG+TGG | 0.583712 | 8:+42297069 | MsG0880044451.01.T01:CDS |
| AAGATCGTCTCGGCTATGAC+AGG | 0.584840 | 8:+42296497 | MsG0880044451.01.T01:CDS |
| TGTTGAAGAGCATGTAGCTG+TGG | 0.585004 | 8:-42296599 | None:intergenic |
| CAATCAATGGCGAGAGTCGG+AGG | 0.587240 | 8:-42297517 | None:intergenic |
| CGTAGAATTGAATCGCAGTG+TGG | 0.587501 | 8:-42296468 | None:intergenic |
| GCACCAGCAGCATCATCAAG+AGG | 0.590018 | 8:+42297122 | MsG0880044451.01.T01:CDS |
| CATCAGGCTTCTGTCTCTGG+TGG | 0.590853 | 8:+42297411 | MsG0880044451.01.T01:CDS |
| TCTATCCAAGCACGAACTGA+AGG | 0.592530 | 8:-42297327 | None:intergenic |
| AGTAGTAGCAGTGGGAAACA+TGG | 0.592595 | 8:+42296799 | MsG0880044451.01.T01:CDS |
| TGTGGTGGTGGTTGTCATGG+TGG | 0.600873 | 8:-42297014 | None:intergenic |
| TTCCAATCAATGGCGAGAGT+CGG | 0.602863 | 8:-42297520 | None:intergenic |
| AGCACGAATTCAGGGTGAAG+AGG | 0.603117 | 8:+42297458 | MsG0880044451.01.T01:CDS |
| GATGGTGGTAACAGTGGCCA+TGG | 0.608651 | 8:+42297213 | MsG0880044451.01.T01:CDS |
| TGACCATAACCGCCAAACGC+CGG | 0.611880 | 8:-42297264 | None:intergenic |
| GATAGATCCTTCAATGGCGA+CGG | 0.613580 | 8:+42297344 | MsG0880044451.01.T01:CDS |
| GACTACAACAGTAGTAGCAG+TGG | 0.615455 | 8:+42296790 | MsG0880044451.01.T01:CDS |
| TCCACCACCTTCGTAACCAA+GGG | 0.616053 | 8:-42297073 | None:intergenic |
| GTTTCACCGGCAATCTCCGG+TGG | 0.616152 | 8:+42296660 | MsG0880044451.01.T01:CDS |
| TACGACGTGCAAGATCGTCT+CGG | 0.617162 | 8:+42296487 | MsG0880044451.01.T01:CDS |
| CGGTGCATACTTTACTGTGA+CGG | 0.619367 | 8:-42296408 | None:intergenic |
| ATAACTGTGAAACGACGTCG+TGG | 0.622223 | 8:-42296890 | None:intergenic |
| TTGGCGAAAGATAGTGATGA+TGG | 0.622368 | 8:-42297383 | None:intergenic |
| CTTGAAAAGATTGCAATGAG+AGG | 0.622677 | 8:-42296972 | None:intergenic |
| GAGTCGGAGGAAGCAGAGGA+CGG | 0.623160 | 8:-42297504 | None:intergenic |
| ACCTCGTCCAAGAGAATCAG+CGG | 0.626058 | 8:+42296307 | MsG0880044451.01.T01:CDS |
| GGAAATTGTTGTTCTTGTGG+TGG | 0.633432 | 8:-42296742 | None:intergenic |
| ACCACCTTCGTAACCAAGGG+AGG | 0.633440 | 8:-42297070 | None:intergenic |
| TGGATTTGTGTTCAGTACAC+CGG | 0.633611 | 8:+42297239 | MsG0880044451.01.T01:CDS |
| GCCGGATTTACTCTCTCGAA+CGG | 0.636064 | 8:+42296921 | MsG0880044451.01.T01:CDS |
| GAAAAGATTGCAATGAGAGG+CGG | 0.637117 | 8:-42296969 | None:intergenic |
| TCACAGTTATCAACAACCGC+CGG | 0.637674 | 8:+42296903 | MsG0880044451.01.T01:CDS |
| GCGGAGATCTTGCTGCTGGG+TGG | 0.647953 | 8:-42296950 | None:intergenic |
| GTGGAAGTGGAAGCACCTTG+TGG | 0.652297 | 8:+42297091 | MsG0880044451.01.T01:CDS |
| GTTAATGCTAATGCTGCAGA+TGG | 0.654669 | 8:+42297195 | MsG0880044451.01.T01:CDS |
| ACTACAACAGTAGTAGCAGT+GGG | 0.659751 | 8:+42296791 | MsG0880044451.01.T01:CDS |
| AATGCTAATGCTGCAGATGG+TGG | 0.664064 | 8:+42297198 | MsG0880044451.01.T01:CDS |
| CTCGTTAGACACTGACATTG+CGG | 0.667721 | 8:+42296834 | MsG0880044451.01.T01:CDS |
| TAACTGTGAAACGACGTCGT+GGG | 0.673437 | 8:-42296889 | None:intergenic |
| TGAGCGGTGACTGGTAGAAG+CGG | 0.674706 | 8:-42296698 | None:intergenic |
| TTCGCTCTAATGCCGCTGAG+CGG | 0.675852 | 8:-42296714 | None:intergenic |
| GGATTTACTCTCTCGAACGG+CGG | 0.682808 | 8:+42296924 | MsG0880044451.01.T01:CDS |
| GCTGCAGATGGTGGTAACAG+TGG | 0.701228 | 8:+42297207 | MsG0880044451.01.T01:CDS |
| GGATTGTAACTGGACTGAAG+GGG | 0.704803 | 8:-42297306 | None:intergenic |
| TGAACACAAATCCAGCACCA+TGG | 0.705786 | 8:-42297230 | None:intergenic |
| TTCTACCAGTCACCGCTCAG+CGG | 0.712108 | 8:+42296702 | MsG0880044451.01.T01:CDS |
| CTGTGGGGTTCCAAGCAGGG+AGG | 0.716198 | 8:-42296582 | None:intergenic |
| TGTGGGCTGAGAGTCGTACG+CGG | 0.717449 | 8:-42296450 | None:intergenic |
| AGGAGGAGGAGAAATCGTGG+AGG | 0.725082 | 8:+42296345 | MsG0880044451.01.T01:CDS |
| TTGAAGAGCATGTAGCTGTG+GGG | 0.726320 | 8:-42296597 | None:intergenic |
| GTTCGAGAGAGTAAATCCGG+CGG | 0.739877 | 8:-42296919 | None:intergenic |
| GAAATCGTGGAGGTACAAGG+AGG | 0.742186 | 8:+42296355 | MsG0880044451.01.T01:CDS |
| GGGCTGAGAGTCGTACGCGG+CGG | 0.755550 | 8:-42296447 | None:intergenic |
| CAGGGTGAAGAGGAACACGA+CGG | 0.776987 | 8:+42297468 | MsG0880044451.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAACAAATGAAATGTTTCAC+CGG | + | Chr8:42296647-42296666 | MsG0880044451.01.T01:CDS | 25.0% |
| CATCAAGAGGAACATGATAA+CGG | + | Chr8:42297135-42297154 | MsG0880044451.01.T01:CDS | 35.0% | |
| CTTGAAAAGATTGCAATGAG+AGG | - | Chr8:42296975-42296994 | None:intergenic | 35.0% | |
| ! | GAAGGAAATTGTTGTTCTTG+TGG | - | Chr8:42296748-42296767 | None:intergenic | 35.0% |
| !!! | ATGGTCAGTTTTTTACTCAG+AGG | + | Chr8:42297280-42297299 | MsG0880044451.01.T01:CDS | 35.0% |
| !!! | TGGTCAGTTTTTTACTCAGA+GGG | + | Chr8:42297281-42297300 | MsG0880044451.01.T01:CDS | 35.0% |
| AAGGATTGTAACTGGACTGA+AGG | - | Chr8:42297311-42297330 | None:intergenic | 40.0% | |
| ACGAACTGAAGGATTGTAAC+TGG | - | Chr8:42297319-42297338 | None:intergenic | 40.0% | |
| ACTACAACAGTAGTAGCAGT+GGG | + | Chr8:42296791-42296810 | MsG0880044451.01.T01:CDS | 40.0% | |
| AGGATTGTAACTGGACTGAA+GGG | - | Chr8:42297310-42297329 | None:intergenic | 40.0% | |
| GAAAAGATTGCAATGAGAGG+CGG | - | Chr8:42296972-42296991 | None:intergenic | 40.0% | |
| GAGTTCATCGATAGCAGATT+TGG | - | Chr8:42296557-42296576 | None:intergenic | 40.0% | |
| GATTGCATAGAATGATGGCT+TGG | + | Chr8:42297160-42297179 | MsG0880044451.01.T01:CDS | 40.0% | |
| GTAGAATTGAATCGCAGTGT+GGG | - | Chr8:42296470-42296489 | None:intergenic | 40.0% | |
| GTTAATGCTAATGCTGCAGA+TGG | + | Chr8:42297195-42297214 | MsG0880044451.01.T01:CDS | 40.0% | |
| TCCTTCTCAACAACAACAGT+TGG | + | Chr8:42296762-42296781 | MsG0880044451.01.T01:CDS | 40.0% | |
| TGCTTGGATAGATCCTTCAA+TGG | + | Chr8:42297338-42297357 | MsG0880044451.01.T01:CDS | 40.0% | |
| TGGATTTGTGTTCAGTACAC+CGG | + | Chr8:42297239-42297258 | MsG0880044451.01.T01:CDS | 40.0% | |
| TTGGCGAAAGATAGTGATGA+TGG | - | Chr8:42297386-42297405 | None:intergenic | 40.0% | |
| ! | GGAAATTGTTGTTCTTGTGG+TGG | - | Chr8:42296745-42296764 | None:intergenic | 40.0% |
| ! | GGGAAACATGGTTTTCTTCA+AGG | + | Chr8:42296811-42296830 | MsG0880044451.01.T01:CDS | 40.0% |
| ! | TCCAACTGTTGTTGTTGAGA+AGG | - | Chr8:42296766-42296785 | None:intergenic | 40.0% |
| !!! | GGTCAGTTTTTTACTCAGAG+GGG | + | Chr8:42297282-42297301 | MsG0880044451.01.T01:CDS | 40.0% |
| AATGCTAATGCTGCAGATGG+TGG | + | Chr8:42297198-42297217 | MsG0880044451.01.T01:CDS | 45.0% | |
| AATGTTTCACCGGCAATCTC+CGG | + | Chr8:42296657-42296676 | MsG0880044451.01.T01:CDS | 45.0% | |
| ACAATCCTTCAGTTCGTGCT+TGG | + | Chr8:42297322-42297341 | MsG0880044451.01.T01:CDS | 45.0% | |
| AGCCAATCGACTGCTTTACT+TGG | - | Chr8:42296523-42296542 | None:intergenic | 45.0% | |
| AGTAAAGTATGCACCGCGAA+AGG | + | Chr8:42296415-42296434 | MsG0880044451.01.T01:CDS | 45.0% | |
| AGTAGTAGCAGTGGGAAACA+TGG | + | Chr8:42296799-42296818 | MsG0880044451.01.T01:CDS | 45.0% | |
| ATAACTGTGAAACGACGTCG+TGG | - | Chr8:42296893-42296912 | None:intergenic | 45.0% | |
| CGGCAGATTGCATAGAATGA+TGG | + | Chr8:42297155-42297174 | MsG0880044451.01.T01:CDS | 45.0% | |
| CGGTGCATACTTTACTGTGA+CGG | - | Chr8:42296411-42296430 | None:intergenic | 45.0% | |
| CGTAGAATTGAATCGCAGTG+TGG | - | Chr8:42296471-42296490 | None:intergenic | 45.0% | |
| CGTATACCAGCACGAATTCA+GGG | + | Chr8:42297450-42297469 | MsG0880044451.01.T01:CDS | 45.0% | |
| CTCGTTAGACACTGACATTG+CGG | + | Chr8:42296834-42296853 | MsG0880044451.01.T01:CDS | 45.0% | |
| GACTACAACAGTAGTAGCAG+TGG | + | Chr8:42296790-42296809 | MsG0880044451.01.T01:CDS | 45.0% | |
| GATAGATCCTTCAATGGCGA+CGG | + | Chr8:42297344-42297363 | MsG0880044451.01.T01:CDS | 45.0% | |
| GGATTGTAACTGGACTGAAG+GGG | - | Chr8:42297309-42297328 | None:intergenic | 45.0% | |
| GTTACTGGATTGTTGTCCAC+CGG | - | Chr8:42296679-42296698 | None:intergenic | 45.0% | |
| TAACTGTGAAACGACGTCGT+GGG | - | Chr8:42296892-42296911 | None:intergenic | 45.0% | |
| TCACAGTTATCAACAACCGC+CGG | + | Chr8:42296903-42296922 | MsG0880044451.01.T01:CDS | 45.0% | |
| TCGTATACCAGCACGAATTC+AGG | + | Chr8:42297449-42297468 | MsG0880044451.01.T01:CDS | 45.0% | |
| TCTATCCAAGCACGAACTGA+AGG | - | Chr8:42297330-42297349 | None:intergenic | 45.0% | |
| TCTTTCGCCAATGATCCATC+AGG | + | Chr8:42297395-42297414 | MsG0880044451.01.T01:CDS | 45.0% | |
| TGAACACAAATCCAGCACCA+TGG | - | Chr8:42297233-42297252 | None:intergenic | 45.0% | |
| ! | AACAACCAAGTGCTTTTCGC+CGG | + | Chr8:42297042-42297061 | MsG0880044451.01.T01:CDS | 45.0% |
| ! | ACAGAAGCCTGATGGATCAT+TGG | - | Chr8:42297405-42297424 | None:intergenic | 45.0% |
| ! | CTTGGTTGTTGTTGTTGTGG+TGG | - | Chr8:42297032-42297051 | None:intergenic | 45.0% |
| ! | GCACTTGGTTGTTGTTGTTG+TGG | - | Chr8:42297035-42297054 | None:intergenic | 45.0% |
| ! | GTTGAAGAGCATGTAGCTGT+GGG | - | Chr8:42296601-42296620 | None:intergenic | 45.0% |
| ! | TGTTGAAGAGCATGTAGCTG+TGG | - | Chr8:42296602-42296621 | None:intergenic | 45.0% |
| ! | TTGAAGAGCATGTAGCTGTG+GGG | - | Chr8:42296600-42296619 | None:intergenic | 45.0% |
| !! | TGGTGGCTCTGAAGCATAAT+AGG | - | Chr8:42297000-42297019 | None:intergenic | 45.0% |
| AACTCCTCCCTTGGTTACGA+AGG | + | Chr8:42297066-42297085 | MsG0880044451.01.T01:CDS | 50.0% | |
| AAGATCGTCTCGGCTATGAC+AGG | + | Chr8:42296497-42296516 | MsG0880044451.01.T01:CDS | 50.0% | |
| ACCTCGTCCAAGAGAATCAG+CGG | + | Chr8:42296307-42296326 | MsG0880044451.01.T01:CDS | 50.0% | |
| AGCACGAATTCAGGGTGAAG+AGG | + | Chr8:42297458-42297477 | MsG0880044451.01.T01:CDS | 50.0% | |
| ATATTCGCCGTCGCCATTGA+AGG | - | Chr8:42297354-42297373 | None:intergenic | 50.0% | |
| ATCCATCAGGCTTCTGTCTC+TGG | + | Chr8:42297408-42297427 | MsG0880044451.01.T01:CDS | 50.0% | |
| GCCGGATTTACTCTCTCGAA+CGG | + | Chr8:42296921-42296940 | MsG0880044451.01.T01:CDS | 50.0% | |
| GCCGTTCGAGAGAGTAAATC+CGG | - | Chr8:42296925-42296944 | None:intergenic | 50.0% | |
| GGAAGCAGAGGACGGTTTAT+CGG | - | Chr8:42297499-42297518 | None:intergenic | 50.0% | |
| GGATTTACTCTCTCGAACGG+CGG | + | Chr8:42296924-42296943 | MsG0880044451.01.T01:CDS | 50.0% | |
| GGCCAAGTAAAGCAGTCGAT+TGG | + | Chr8:42296518-42296537 | MsG0880044451.01.T01:CDS | 50.0% | |
| GGTCACATTGTCCGTTCAAC+AGG | + | Chr8:42296376-42296395 | MsG0880044451.01.T01:CDS | 50.0% | |
| GGTCTTTGCGTCCTGTTGAA+CGG | - | Chr8:42296390-42296409 | None:intergenic | 50.0% | |
| GTAACCAAGGGAGGAGTTTC+CGG | - | Chr8:42297064-42297083 | None:intergenic | 50.0% | |
| GTTCGAGAGAGTAAATCCGG+CGG | - | Chr8:42296922-42296941 | None:intergenic | 50.0% | |
| TACGACGTGCAAGATCGTCT+CGG | + | Chr8:42296487-42296506 | MsG0880044451.01.T01:CDS | 50.0% | |
| TCCACCACCTTCGTAACCAA+GGG | - | Chr8:42297076-42297095 | None:intergenic | 50.0% | |
| TCTTCACCCTGAATTCGTGC+TGG | - | Chr8:42297459-42297478 | None:intergenic | 50.0% | |
| TGACTGGTAGAAGCGGTTAC+TGG | - | Chr8:42296694-42296713 | None:intergenic | 50.0% | |
| TTCCACCACCTTCGTAACCA+AGG | - | Chr8:42297077-42297096 | None:intergenic | 50.0% | |
| ! | GAAATCGTGGAGGTACAAGG+AGG | + | Chr8:42296355-42296374 | MsG0880044451.01.T01:CDS | 50.0% |
| ! | GGAGAAATCGTGGAGGTACA+AGG | + | Chr8:42296352-42296371 | MsG0880044451.01.T01:CDS | 50.0% |
| ! | GGTTGTTGTTGTTGTGGTGG+TGG | - | Chr8:42297029-42297048 | None:intergenic | 50.0% |
| !! | AGTTTCCGGCGAAAAGCACT+TGG | - | Chr8:42297050-42297069 | None:intergenic | 50.0% |
| !! | GTTCCTCTTGATGATGCTGC+TGG | - | Chr8:42297128-42297147 | None:intergenic | 50.0% |
| !! | TGTTGTGGTGGTGGTTGTCA+TGG | - | Chr8:42297020-42297039 | None:intergenic | 50.0% |
| ACAACACACGACCAGCACAC+AGG | + | Chr8:42296235-42296254 | MsG0880044451.01.T01:CDS | 55.0% | |
| ACCACCTTCGTAACCAAGGG+AGG | - | Chr8:42297073-42297092 | None:intergenic | 55.0% | |
| AGGAGGAGGAGAAATCGTGG+AGG | + | Chr8:42296345-42296364 | MsG0880044451.01.T01:CDS | 55.0% | |
| AGGAGGAGGAGGAGAAATCG+TGG | + | Chr8:42296342-42296361 | MsG0880044451.01.T01:CDS | 55.0% | |
| CACCAGAGACAGAAGCCTGA+TGG | - | Chr8:42297413-42297432 | None:intergenic | 55.0% | |
| CAGGGTGAAGAGGAACACGA+CGG | + | Chr8:42297468-42297487 | MsG0880044451.01.T01:CDS | 55.0% | |
| CATCAGGCTTCTGTCTCTGG+TGG | + | Chr8:42297411-42297430 | MsG0880044451.01.T01:CDS | 55.0% | |
| GCACCAGCAGCATCATCAAG+AGG | + | Chr8:42297122-42297141 | MsG0880044451.01.T01:CDS | 55.0% | |
| TAGCTGTGGGGTTCCAAGCA+GGG | - | Chr8:42296588-42296607 | None:intergenic | 55.0% | |
| TCCAAGAGAATCAGCGGCAG+CGG | + | Chr8:42296313-42296332 | MsG0880044451.01.T01:CDS | 55.0% | |
| TCCCTTGGTTACGAAGGTGG+TGG | + | Chr8:42297072-42297091 | MsG0880044451.01.T01:CDS | 55.0% | |
| TCCTCCCTTGGTTACGAAGG+TGG | + | Chr8:42297069-42297088 | MsG0880044451.01.T01:CDS | 55.0% | |
| TGACCATAACCGCCAAACGC+CGG | - | Chr8:42297267-42297286 | None:intergenic | 55.0% | |
| TGAGCGGTGACTGGTAGAAG+CGG | - | Chr8:42296701-42296720 | None:intergenic | 55.0% | |
| TGTGTTCAGTACACCGGCAC+CGG | + | Chr8:42297245-42297264 | MsG0880044451.01.T01:CDS | 55.0% | |
| TGTTGTCCACCGGAGATTGC+CGG | - | Chr8:42296669-42296688 | None:intergenic | 55.0% | |
| TTCGCTCTAATGCCGCTGAG+CGG | - | Chr8:42296717-42296736 | None:intergenic | 55.0% | |
| TTCTACCAGTCACCGCTCAG+CGG | + | Chr8:42296702-42296721 | MsG0880044451.01.T01:CDS | 55.0% | |
| ! | CTGTTGCTGTTCCTGTGTGC+TGG | - | Chr8:42296249-42296268 | None:intergenic | 55.0% |
| ! | GATGGTGGTAACAGTGGCCA+TGG | + | Chr8:42297213-42297232 | MsG0880044451.01.T01:CDS | 55.0% |
| ! | GCTGCAGATGGTGGTAACAG+TGG | + | Chr8:42297207-42297226 | MsG0880044451.01.T01:CDS | 55.0% |
| !! | GGTTACGAAGGTGGTGGAAG+TGG | + | Chr8:42297078-42297097 | MsG0880044451.01.T01:CDS | 55.0% |
| !! | GTCTCTGGTGGTGGATTCTC+AGG | + | Chr8:42297423-42297442 | MsG0880044451.01.T01:CDS | 55.0% |
| !! | GTGGAAGTGGAAGCACCTTG+TGG | + | Chr8:42297091-42297110 | MsG0880044451.01.T01:CDS | 55.0% |
| !! | TGTGGTGGTGGTTGTCATGG+TGG | - | Chr8:42297017-42297036 | None:intergenic | 55.0% |
| AACTCGCTCACCTCCCTGCT+TGG | + | Chr8:42296572-42296591 | MsG0880044451.01.T01:CDS | 60.0% | |
| AAGAGAATCAGCGGCAGCGG+AGG | + | Chr8:42296316-42296335 | MsG0880044451.01.T01:CDS | 60.0% | |
| AGAGGCGGAGATCTTGCTGC+TGG | - | Chr8:42296957-42296976 | None:intergenic | 60.0% | |
| CAGGCTTCTGTCTCTGGTGG+TGG | + | Chr8:42297414-42297433 | MsG0880044451.01.T01:CDS | 60.0% | |
| GACGTCGTGGGCGTTTCAAC+TGG | - | Chr8:42296880-42296899 | None:intergenic | 60.0% | |
| GAGGCGGAGATCTTGCTGCT+GGG | - | Chr8:42296956-42296975 | None:intergenic | 60.0% | |
| GAGTCGGAGGAAGCAGAGGA+CGG | - | Chr8:42297507-42297526 | None:intergenic | 60.0% | |
| GGTAACAGTGGCCATGGTGC+TGG | + | Chr8:42297219-42297238 | MsG0880044451.01.T01:CDS | 60.0% | |
| GTAGCTGTGGGGTTCCAAGC+AGG | - | Chr8:42296589-42296608 | None:intergenic | 60.0% | |
| GTTTCACCGGCAATCTCCGG+TGG | + | Chr8:42296660-42296679 | MsG0880044451.01.T01:CDS | 60.0% | |
| TAATGCCGCTGAGCGGTGAC+TGG | - | Chr8:42296710-42296729 | None:intergenic | 60.0% | |
| TTCGCCGGAAACTCCTCCCT+TGG | + | Chr8:42297057-42297076 | MsG0880044451.01.T01:CDS | 60.0% | |
| ! | TGTGGGCTGAGAGTCGTACG+CGG | - | Chr8:42296453-42296472 | None:intergenic | 60.0% |
| !! | CTGGTGCTGCTCAGACCACA+AGG | - | Chr8:42297109-42297128 | None:intergenic | 60.0% |
| !! | GCCGCTGATTCTCTTGGACG+AGG | - | Chr8:42296311-42296330 | None:intergenic | 60.0% |
| !! | TCCGCTGCCGCTGATTCTCT+TGG | - | Chr8:42296317-42296336 | None:intergenic | 60.0% |
| AGAATCAGCGGCAGCGGAGG+AGG | + | Chr8:42296319-42296338 | MsG0880044451.01.T01:CDS | 65.0% | |
| AGAGTCGTACGCGGCGGTCA+CGG | - | Chr8:42296444-42296463 | None:intergenic | 65.0% | |
| CTGTGGGGTTCCAAGCAGGG+AGG | - | Chr8:42296585-42296604 | None:intergenic | 65.0% | |
| GCGAGAGTCGGAGGAAGCAG+AGG | - | Chr8:42297511-42297530 | None:intergenic | 65.0% | |
| GCGGAGATCTTGCTGCTGGG+TGG | - | Chr8:42296953-42296972 | None:intergenic | 65.0% | |
| TAACCGCCAAACGCCGGTGC+CGG | - | Chr8:42297261-42297280 | None:intergenic | 65.0% | |
| TGCTGCTGCTGCTGCTGCTG+TGG | - | Chr8:42296625-42296644 | None:intergenic | 65.0% | |
| ! | GCACCGGCGTTTGGCGGTTA+TGG | + | Chr8:42297261-42297280 | MsG0880044451.01.T01:CDS | 65.0% |
| !! | AGTACACCGGCACCGGCGTT+TGG | + | Chr8:42297252-42297271 | MsG0880044451.01.T01:CDS | 65.0% |
| AGCGGAGGAGGAGGAGGAGG+AGG | + | Chr8:42296331-42296350 | MsG0880044451.01.T01:CDS | 70.0% | |
| AGTCGTACGCGGCGGTCACG+GGG | - | Chr8:42296442-42296461 | None:intergenic | 70.0% | |
| ATCAGCGGCAGCGGAGGAGG+AGG | + | Chr8:42296322-42296341 | MsG0880044451.01.T01:CDS | 70.0% | |
| GAGTCGTACGCGGCGGTCAC+GGG | - | Chr8:42296443-42296462 | None:intergenic | 70.0% | |
| GCGGTCACGGGGACCTTTCG+CGG | - | Chr8:42296431-42296450 | None:intergenic | 70.0% | |
| GGGCTGAGAGTCGTACGCGG+CGG | - | Chr8:42296450-42296469 | None:intergenic | 70.0% | |
| !! | ACACCGGCACCGGCGTTTGG+CGG | + | Chr8:42297255-42297274 | MsG0880044451.01.T01:CDS | 70.0% |
| AGCGGCAGCGGAGGAGGAGG+AGG | + | Chr8:42296325-42296344 | MsG0880044451.01.T01:CDS | 75.0% | |
| GGCAGCGGAGGAGGAGGAGG+AGG | + | Chr8:42296328-42296347 | MsG0880044451.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 42296226 | 42297536 | 42296226 | ID=MsG0880044451.01;Name=MsG0880044451.01 |
| Chr8 | mRNA | 42296226 | 42297536 | 42296226 | ID=MsG0880044451.01.T01;Parent=MsG0880044451.01;Name=MsG0880044451.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|436 |
| Chr8 | exon | 42296226 | 42297536 | 42296226 | ID=MsG0880044451.01.T01:exon:17094;Parent=MsG0880044451.01.T01 |
| Chr8 | CDS | 42296226 | 42297536 | 42296226 | ID=MsG0880044451.01.T01:cds;Parent=MsG0880044451.01.T01 |
| Gene Sequence |
| Protein sequence |
