AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011578.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011578.01.T01 MTR_3g006690 95.949 469 19 0 1 469 1 469 0.0 927
MsG0380011578.01.T01 MTR_2g049420 41.046 497 236 17 1 468 1 469 1.66e-99 306
MsG0380011578.01.T01 MTR_2g049420 40.496 484 248 14 1 468 1 460 3.37e-98 303
MsG0380011578.01.T01 MTR_2g049420 49.847 327 150 8 151 468 11 332 7.44e-95 290
MsG0380011578.01.T01 MTR_3g085400 58.537 205 77 4 266 465 290 491 3.37e-61 208
MsG0380011578.01.T01 MTR_5g045920 53.039 181 84 1 285 464 114 294 1.36e-57 192
MsG0380011578.01.T01 MTR_3g085395 61.988 171 63 2 296 465 200 369 1.48e-56 192
MsG0380011578.01.T01 MTR_2g017810 42.286 175 97 3 284 457 98 269 2.64e-28 114
MsG0380011578.01.T01 MTR_3g070810 34.123 211 116 6 277 465 53 262 1.57e-21 94.7
MsG0380011578.01.T01 MTR_5g082660 38.144 194 97 6 294 465 96 288 2.06e-21 94.7
MsG0380011578.01.T01 MTR_5g095530 34.426 183 96 6 282 460 181 343 2.02e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011578.01.T01 AT5G46410 38.272 486 252 18 1 468 1 456 2.56e-78 251
MsG0380011578.01.T01 AT5G46410 38.272 486 249 18 1 468 1 453 2.06e-77 249
MsG0380011578.01.T01 AT5G46410 38.272 486 249 18 1 468 1 453 2.06e-77 249
MsG0380011578.01.T01 AT4G18140 56.951 223 91 5 250 468 220 441 2.73e-75 243
MsG0380011578.01.T01 AT4G18140 56.951 223 91 5 250 468 220 441 2.73e-75 243
MsG0380011578.01.T01 AT4G18140 56.951 223 91 5 250 468 220 441 2.73e-75 243
MsG0380011578.01.T01 AT4G18140 56.561 221 91 5 250 466 220 439 4.10e-74 240
MsG0380011578.01.T01 AT4G18140 56.561 221 91 5 250 466 220 439 4.10e-74 240
MsG0380011578.01.T01 AT4G18140 56.818 220 90 5 250 465 220 438 7.93e-74 239
MsG0380011578.01.T01 AT5G11860 61.749 183 68 2 283 464 99 280 2.69e-72 231
MsG0380011578.01.T01 AT5G11860 61.749 183 68 2 283 464 99 280 2.69e-72 231
MsG0380011578.01.T01 AT5G11860 61.749 183 68 2 283 464 99 280 2.69e-72 231
MsG0380011578.01.T01 AT5G11860 61.749 183 68 2 283 464 99 280 2.69e-72 231
MsG0380011578.01.T01 AT5G11860 61.749 183 68 2 283 464 99 280 2.69e-72 231
MsG0380011578.01.T01 AT1G29780 40.698 172 99 3 297 466 51 221 8.65e-35 129
MsG0380011578.01.T01 AT5G45700 42.262 168 95 2 297 462 99 266 9.22e-32 123
MsG0380011578.01.T01 AT1G29770 39.785 186 105 5 285 467 95 276 2.99e-31 122
MsG0380011578.01.T01 AT3G55960 37.186 199 98 9 291 465 93 288 7.43e-22 96.3
MsG0380011578.01.T01 AT1G55900 31.638 177 101 5 294 467 188 347 7.84e-16 79.3
MsG0380011578.01.T01 AT1G55900 31.638 177 101 5 294 467 188 347 7.99e-16 79.3
MsG0380011578.01.T01 AT1G43610 29.630 189 97 5 290 448 47 229 9.20e-15 74.7
MsG0380011578.01.T01 AT1G43600 32.877 146 80 4 298 431 21 160 1.07e-13 70.9
MsG0380011578.01.T01 AT5G54210 27.619 210 117 7 238 431 41 231 2.63e-13 70.9
MsG0380011578.01.T01 AT1G20320 32.911 158 81 7 294 436 75 222 2.45e-11 65.5
MsG0380011578.01.T01 AT3G17550 30.000 150 86 4 294 431 84 226 7.15e-11 63.5

Find 108 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAAGATTTGACAGTTCT+TGG 0.197757 3:-1722863 MsG0380011578.01.T01:CDS
ACAGAGGCTGTGTTAATTAA+TGG 0.241927 3:-1722006 MsG0380011578.01.T01:three_prime_UTR
TTCAGAAATAGCTATGATTC+TGG 0.252842 3:-1722133 MsG0380011578.01.T01:three_prime_UTR
AGGATCCTGTGAAGAGTTTC+AGG 0.253011 3:-1723528 MsG0380011578.01.T01:CDS
TTTGGTCTCTGCAGTTAATA+AGG 0.260231 3:-1723795 MsG0380011578.01.T01:intron
ATCAACGAGTTTCTCCAAAA+AGG 0.304200 3:+1722341 None:intergenic
AGAGATATTCATAAGCTTCT+TGG 0.304963 3:-1723387 MsG0380011578.01.T01:CDS
TCATGCCAAACATATCTTAA+TGG 0.308449 3:-1726329 MsG0380011578.01.T01:CDS
TCAAATTTCTCTGCGATAAT+CGG 0.313863 3:+1722303 None:intergenic
TGTTACCCTTGTTCTTGATT+TGG 0.319591 3:-1723300 MsG0380011578.01.T01:CDS
ACACTGTCTATGTGCGAAAA+AGG 0.330339 3:-1723057 MsG0380011578.01.T01:CDS
TACTCCTTGTCAAGTAAAAC+TGG 0.332299 3:+1723079 None:intergenic
TTTGCAAGTTGTAGGAGATT+TGG 0.337752 3:+1726454 None:intergenic
GGAAGATCGTATAACAAATT+TGG 0.344441 3:+1723596 None:intergenic
TCCAAGAACTGTCAAATCTT+TGG 0.348444 3:+1722862 None:intergenic
ATATCAGGTATTTCGAAATT+CGG 0.355833 3:+1723728 None:intergenic
ATTGATGCCAGCAGTTAAAA+TGG 0.362284 3:-1726480 MsG0380011578.01.T01:exon
TTTCTTCATCACATGACATT+TGG 0.375096 3:+1726110 None:intergenic
CATCGTAACTTATTTGAAAC+AGG 0.379707 3:-1724517 MsG0380011578.01.T01:intron
TAAGCAAGGAGACAAGTAAA+AGG 0.380226 3:-1723328 MsG0380011578.01.T01:CDS
TTAACTGCTGGCATCAATGC+TGG 0.393130 3:+1726485 None:intergenic
TACCACCATTAAGATATGTT+TGG 0.394938 3:+1726324 None:intergenic
TATGTGGATGAAGCATTCTT+CGG 0.396115 3:-1723695 MsG0380011578.01.T01:CDS
ACATAGTAGTCTAACATATC+AGG 0.399328 3:+1723713 None:intergenic
ATGAGTCAGAGAAGCGAAAA+GGG 0.401028 3:+1728501 None:intergenic
ATGTGGATGAAGCATTCTTC+GGG 0.403727 3:-1723694 MsG0380011578.01.T01:CDS
TCAGAAATAGCTATGATTCT+GGG 0.405810 3:-1722132 MsG0380011578.01.T01:three_prime_UTR
CAGAGGCTGTGTTAATTAAT+GGG 0.406909 3:-1722005 MsG0380011578.01.T01:three_prime_UTR
GCAAAGGACAATCTGTCAAT+AGG 0.410942 3:-1726539 MsG0380011578.01.T01:five_prime_UTR
TCATCAAACCAACTCTCAAT+AGG 0.412269 3:+1722396 None:intergenic
ATGCTTTCGTCAAGGGTACT+AGG 0.416784 3:+1723575 None:intergenic
AGCCAATGCCTGATTCTTCA+TGG 0.422624 3:-1723505 MsG0380011578.01.T01:CDS
GTTCAATGTCATTTGCCATC+AGG 0.445330 3:-1723483 MsG0380011578.01.T01:CDS
CTGAGGAGAGTTGTCTACTA+TGG 0.448136 3:+1722820 None:intergenic
AGCAAATTCAAGATCAGAAA+AGG 0.452816 3:+1723622 None:intergenic
TGCTTCTATGCTTTCGTCAA+GGG 0.461989 3:+1723568 None:intergenic
AAGTTACGATGGGCATCATC+AGG 0.463644 3:+1724529 None:intergenic
AAGAAGCTTATGAATATCTC+TGG 0.466228 3:+1723389 None:intergenic
GCATCATGTTCTTCAGTAAG+TGG 0.473251 3:+1723455 None:intergenic
CTTCACAGGATCCTACATAT+TGG 0.474904 3:+1723537 None:intergenic
AGAGAAACAAACCATAGCTT+AGG 0.477375 3:-1728412 MsG0380011578.01.T01:intron
CTGCTTCTATGCTTTCGTCA+AGG 0.478495 3:+1723567 None:intergenic
TACTAGAGCTGGCAATGAGT+TGG 0.481285 3:+1723349 None:intergenic
CAGTAAGTGGCTTGGCCTGA+TGG 0.481696 3:+1723468 None:intergenic
GATGAGTCAGAGAAGCGAAA+AGG 0.482284 3:+1728500 None:intergenic
AGACAACAATGTATCTGAAT+CGG 0.483233 3:+1724564 None:intergenic
GTCTCCTTGCTTACTAGAGC+TGG 0.484300 3:+1723338 None:intergenic
CTGTCATCCGCTCGATCAGG+TGG 0.487999 3:+1723758 None:intergenic
GAATCTGCACAACCATTGAA+TGG 0.488459 3:+1726064 None:intergenic
ACCCTTGTTCTTGATTTGGA+TGG 0.489792 3:-1723296 MsG0380011578.01.T01:intron
TTACTGTCATCCGCTCGATC+AGG 0.495088 3:+1723755 None:intergenic
GACATTGCAGAAACAGAAAC+CGG 0.496076 3:+1724586 None:intergenic
TAACTGCTGGCATCAATGCT+GGG 0.500702 3:+1726486 None:intergenic
TCAGACTGCAAGTTAACAAT+GGG 0.500724 3:-1722422 MsG0380011578.01.T01:CDS
ACATTGAACCATGAAGAATC+AGG 0.505703 3:+1723497 None:intergenic
ATCTAAATCTTCCATTGCAT+CGG 0.506886 3:+1726355 None:intergenic
GTAATCGACTAATTCTATGA+AGG 0.512194 3:+1722237 None:intergenic
GATATTCATAAGCTTCTTGG+AGG 0.517387 3:-1723384 MsG0380011578.01.T01:CDS
TAGTCGAGACCATCATCAAA+TGG 0.518538 3:+1723650 None:intergenic
AGAATCAAGCTGACATGACC+TGG 0.521297 3:+1723433 None:intergenic
AATGTGCAAGACAACTAGGC+AGG 0.526575 3:+1722177 None:intergenic
ATGGGATTCCTATTGAGAGT+TGG 0.527202 3:-1722404 MsG0380011578.01.T01:CDS
GAGAAGCGAAAAGGGGTCAA+TGG 0.527406 3:+1728509 None:intergenic
TGCAGATTCGATAGTAGAAA+CGG 0.528104 3:-1726050 MsG0380011578.01.T01:intron
AAAAGACTATGTTCGATGGT+TGG 0.528813 3:-1726383 MsG0380011578.01.T01:CDS
CATAGTAGACAACTCTCCTC+AGG 0.530342 3:-1722819 MsG0380011578.01.T01:intron
ATGTTCTTCAGTAAGTGGCT+TGG 0.530771 3:+1723460 None:intergenic
GAAATCAAAGCAGAATCAGA+TGG 0.530841 3:+1722372 None:intergenic
TTCTTACAGGTTAAATGCAA+AGG 0.535920 3:-1726555 MsG0380011578.01.T01:intron
CTTGATAGATGCACGAATCC+CGG 0.538707 3:+1722897 None:intergenic
AATCTGCACAACCATTGAAT+GGG 0.540743 3:+1726065 None:intergenic
AACCATGAAGAATCAGGCAT+TGG 0.542330 3:+1723503 None:intergenic
AAGAACAGTCTCCCATTCAA+TGG 0.552978 3:-1726076 MsG0380011578.01.T01:CDS
CTAAAATGTGCAAGACAACT+AGG 0.557100 3:+1722173 None:intergenic
GCAGCAAGCTACCAATATGT+AGG 0.557348 3:-1723548 MsG0380011578.01.T01:CDS
TGTAAATAAAGAATATTCAA+AGG 0.559231 3:-1726152 MsG0380011578.01.T01:CDS
TGGCTCCTGAAACTCTTCAC+AGG 0.559633 3:+1723523 None:intergenic
ATCTAAAAGACTATGTTCGA+TGG 0.561719 3:-1726387 MsG0380011578.01.T01:CDS
AGAAACACGTACCTAAGCTA+TGG 0.569471 3:+1728401 None:intergenic
TGTTTCAAATAAGTTACGAT+GGG 0.569476 3:+1724519 None:intergenic
TTTGGAGAAACTCGTTGATG+TGG 0.569892 3:-1722337 MsG0380011578.01.T01:CDS
TGTGATGAAGAAACAATTGT+GGG 0.571140 3:-1726100 MsG0380011578.01.T01:CDS
TACCATCCAAATCAAGAACA+AGG 0.575097 3:+1723294 None:intergenic
CATATTTCGCCATTGTAGAG+TGG 0.577483 3:+1723125 None:intergenic
GACTAATTCTATGAAGGGCA+AGG 0.578842 3:+1722243 None:intergenic
TAATCGACTAATTCTATGAA+GGG 0.579853 3:+1722238 None:intergenic
GGTTGGAGTAACCGATGCAA+TGG 0.582451 3:-1726366 MsG0380011578.01.T01:CDS
CTGTTTCAAATAAGTTACGA+TGG 0.585223 3:+1724518 None:intergenic
CAGAAATAGCTATGATTCTG+GGG 0.589495 3:-1722131 MsG0380011578.01.T01:three_prime_UTR
TTCAGACTGCAAGTTAACAA+TGG 0.590311 3:-1722423 MsG0380011578.01.T01:CDS
GGGATCAATCCATTTGATGA+TGG 0.590648 3:-1723659 MsG0380011578.01.T01:CDS
ATTGCCAGCTCTAGTAAGCA+AGG 0.597516 3:-1723342 MsG0380011578.01.T01:CDS
ATGTGCAAGACAACTAGGCA+GGG 0.600660 3:+1722178 None:intergenic
GACTAACCCACCTGATCGAG+CGG 0.602487 3:-1723765 MsG0380011578.01.T01:CDS
GATTCGTGCATCTATCAAGA+TGG 0.612184 3:-1722893 MsG0380011578.01.T01:CDS
TTACTGAAGAACATGATGCC+AGG 0.616908 3:-1723451 MsG0380011578.01.T01:CDS
TGCCAAACATATCTTAATGG+TGG 0.628746 3:-1726326 MsG0380011578.01.T01:intron
ATGTGATGAAGAAACAATTG+TGG 0.631533 3:-1726101 MsG0380011578.01.T01:CDS
TTTGACTTCTGAGACACATG+AGG 0.634096 3:+1726416 None:intergenic
AACACTGATCCACTCTACAA+TGG 0.642575 3:-1723134 MsG0380011578.01.T01:CDS
TGATATGTTAGACTACTATG+TGG 0.652262 3:-1723711 MsG0380011578.01.T01:CDS
TGAGTCAGAGAAGCGAAAAG+GGG 0.654851 3:+1728502 None:intergenic
ACCATCCAAATCAAGAACAA+GGG 0.657637 3:+1723295 None:intergenic
TGTCATCCGCTCGATCAGGT+GGG 0.666821 3:+1723759 None:intergenic
GATGCCAGCAGTTAAAATGG+TGG 0.684628 3:-1726477 MsG0380011578.01.T01:CDS
TAATTCTATGAAGGGCAAGG+AGG 0.697717 3:+1722246 None:intergenic
CTTACTGAACTACAGTACAG+AGG 0.727146 3:-1722022 MsG0380011578.01.T01:three_prime_UTR
GTGATGAAGAAACAATTGTG+GGG 0.742374 3:-1726099 MsG0380011578.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTTTTTTTTTA+TGG - Chr3:1725887-1725906 MsG0380011578.01.T01:intron 0.0%
!! AAAATAAATAAATACATGTT+AGG + Chr3:1723185-1723204 None:intergenic 10.0%
!! AAATAAATAAATACATGTTA+GGG + Chr3:1723184-1723203 None:intergenic 10.0%
!! GTATATATTACTATTTATTA+GGG - Chr3:1723642-1723661 MsG0380011578.01.T01:CDS 10.0%
!! TGTATATATTACTATTTATT+AGG - Chr3:1723641-1723660 MsG0380011578.01.T01:CDS 10.0%
!!! CAAAATTATTTTATACATTT+TGG + Chr3:1727336-1727355 None:intergenic 10.0%
!! ATTTCAATATTATTTACCAT+AGG + Chr3:1728039-1728058 None:intergenic 15.0%
!! CATAAAATGAAATGAAAAAA+TGG + Chr3:1723897-1723916 None:intergenic 15.0%
!! TAATCAATATAAATGTTTGA+TGG - Chr3:1726593-1726612 MsG0380011578.01.T01:intron 15.0%
!! TGTAAATAAAGAATATTCAA+AGG - Chr3:1724356-1724375 MsG0380011578.01.T01:intron 15.0%
!!! AATAATTTTATGTCAAGTTT+TGG - Chr3:1728440-1728459 MsG0380011578.01.T01:five_prime_UTR 15.0%
!!! ATCAAACATTTATATTGATT+AGG + Chr3:1726594-1726613 None:intergenic 15.0%
!!! ATTTTTCATTTTTGATTTTC+TGG - Chr3:1722916-1722935 MsG0380011578.01.T01:CDS 15.0%
!!! GAATACTGTTTTTTTTTTTT+TGG - Chr3:1726039-1726058 MsG0380011578.01.T01:intron 15.0%
!!! TATTTTTTGTATTTGTGTTT+GGG - Chr3:1723339-1723358 MsG0380011578.01.T01:CDS 15.0%
!!! TTAATTTTTAAGCTCAATTT+TGG - Chr3:1722679-1722698 MsG0380011578.01.T01:intron 15.0%
!!! TTATTTTTTGTATTTGTGTT+TGG - Chr3:1723338-1723357 MsG0380011578.01.T01:CDS 15.0%
!!! TTTATTTTTTTTTTTATGGC+AGG - Chr3:1725891-1725910 MsG0380011578.01.T01:intron 15.0%
!! AAAAAAAACAGTATTCTAAC+AGG + Chr3:1726035-1726054 None:intergenic 20.0%
!! AAATTATCAAGACGAATAAA+GGG + Chr3:1726374-1726393 None:intergenic 20.0%
!! AATTCAAAGTTTCACAATTA+AGG + Chr3:1722585-1722604 None:intergenic 20.0%
!! ATAACAAATTCTAACAAAGA+TGG - Chr3:1725117-1725136 MsG0380011578.01.T01:intron 20.0%
!! CAATCATTATATAGATTCTA+AGG + Chr3:1725472-1725491 None:intergenic 20.0%
!! CATTCATGATTCAAAATATT+TGG - Chr3:1727763-1727782 MsG0380011578.01.T01:intron 20.0%
!! GATGTTAGATAATAAAGTAT+TGG - Chr3:1724967-1724986 MsG0380011578.01.T01:intron 20.0%
!! GATGTTAGATAATAAAGTAT+TGG + Chr3:1724986-1724967 None:intergenic 20.0%
!! GCATAATATAAATGTATCAT+TGG - Chr3:1727922-1727941 MsG0380011578.01.T01:intron 20.0%
!! TCAATTACTGAAGAAAAAAA+TGG + Chr3:1722747-1722766 None:intergenic 20.0%
!! TGAAAATTATAATGAAATCC+AGG - Chr3:1723833-1723852 MsG0380011578.01.T01:intron 20.0%
!! TGTACAATAGTGAAAATAAT+AGG + Chr3:1726667-1726686 None:intergenic 20.0%
!! TTATAACGATAAAAACACAT+CGG + Chr3:1727261-1727280 None:intergenic 20.0%
!! TTGTAAAATTGTATGAATTG+TGG - Chr3:1722324-1722343 MsG0380011578.01.T01:CDS 20.0%
!!! AATTAGTTTTGCATATATTC+TGG - Chr3:1728238-1728257 MsG0380011578.01.T01:intron 20.0%
!!! AATTGTGAAACTTTGAATTT+TGG - Chr3:1722586-1722605 MsG0380011578.01.T01:intron 20.0%
!!! ACTGTTCATTATTTTCTTTT+TGG + Chr3:1725833-1725852 None:intergenic 20.0%
!!! ATTTGTTATTCTAACAAAGA+TGG + Chr3:1725106-1725125 None:intergenic 20.0%
!!! ATTTTGTTTATGTTTCTTAC+AGG - Chr3:1723940-1723959 MsG0380011578.01.T01:intron 20.0%
!!! ATTTTTTGTATTTGTGTTTG+GGG - Chr3:1723340-1723359 MsG0380011578.01.T01:CDS 20.0%
!!! CTGTTCATTATTTTCTTTTT+GGG + Chr3:1725832-1725851 None:intergenic 20.0%
!!! GAATTTTGGTTTGATTAATT+GGG - Chr3:1722600-1722619 MsG0380011578.01.T01:intron 20.0%
!!! TGAATTTTGGTTTGATTAAT+TGG - Chr3:1722599-1722618 MsG0380011578.01.T01:intron 20.0%
!!! TTATACATTTTGGAATAAGA+AGG + Chr3:1727326-1727345 None:intergenic 20.0%
!!! TTGAGAAATTGTATGAATTT+TGG - Chr3:1722793-1722812 MsG0380011578.01.T01:intron 20.0%
!!! TTGATTTTCATTTCTTGTTT+TGG - Chr3:1722429-1722448 MsG0380011578.01.T01:CDS 20.0%
!!! TTGATTTTTATGCTCAATTT+TGG - Chr3:1722275-1722294 MsG0380011578.01.T01:exon 20.0%
! AAATCCTTAGTTAAACCAAA+AGG - Chr3:1726126-1726145 MsG0380011578.01.T01:CDS 25.0%
! AACATAATTTATACGAAGAC+AGG + Chr3:1724526-1724545 None:intergenic 25.0%
! AACCTATTATAACATGAAGA+CGG + Chr3:1727723-1727742 None:intergenic 25.0%
! AAGAAACATAAACAAAATGC+AGG + Chr3:1723938-1723957 None:intergenic 25.0%
! AATGGATCATACACAAATTA+TGG + Chr3:1723879-1723898 None:intergenic 25.0%
! AGAATATAAACGAAACCTAA+TGG - Chr3:1725189-1725208 MsG0380011578.01.T01:intron 25.0%
! AGCAAGTAAAAAGATTTATG+CGG - Chr3:1727533-1727552 MsG0380011578.01.T01:intron 25.0%
! ATAGTAAATATGTGGATTTG+TGG + Chr3:1726276-1726295 None:intergenic 25.0%
! ATATATAGAACGATACCTAA+TGG + Chr3:1725031-1725050 None:intergenic 25.0%
! ATATCAGGTATTTCGAAATT+CGG + Chr3:1726783-1726802 None:intergenic 25.0%
! CAAATTATCAAGACGAATAA+AGG + Chr3:1726375-1726394 None:intergenic 25.0%
! GAAAATTAGTCATCTAAATG+AGG + Chr3:1727857-1727876 None:intergenic 25.0%
! GTTAGAAAAATCACTGAAAA+GGG + Chr3:1722723-1722742 None:intergenic 25.0%
! TAATCGACTAATTCTATGAA+GGG + Chr3:1728273-1728292 None:intergenic 25.0%
! TAGGAAACAATTATACTACT+TGG + Chr3:1726648-1726667 None:intergenic 25.0%
! TATAGGAGATTCATGAAAAT+TGG + Chr3:1727883-1727902 None:intergenic 25.0%
! TCAGAATTAAGAACATTTGA+GGG - Chr3:1723485-1723504 MsG0380011578.01.T01:CDS 25.0%
! TCATAATGTAAATGCATCAT+TGG - Chr3:1727967-1727986 MsG0380011578.01.T01:intron 25.0%
! TGAATTGTGGTTTGATTAAT+CGG - Chr3:1722337-1722356 MsG0380011578.01.T01:CDS 25.0%
! TGATTAATGACTTCAATGTT+TGG - Chr3:1723720-1723739 MsG0380011578.01.T01:CDS 25.0%
! TGTTAGAAAAATCACTGAAA+AGG + Chr3:1722724-1722743 None:intergenic 25.0%
! TTACCATAGGCAATAAATAA+AGG + Chr3:1728026-1728045 None:intergenic 25.0%
! TTGTAAAATTGTATGAATCG+TGG - Chr3:1722458-1722477 MsG0380011578.01.T01:intron 25.0%
! TTTGTAAGAGACAATTTCAT+TGG - Chr3:1726173-1726192 MsG0380011578.01.T01:intron 25.0%
!! AGTATTGGACATAAGTTATT+GGG + Chr3:1725238-1725257 None:intergenic 25.0%
!! AGTATTGGACTTAAGTTATT+GGG - Chr3:1724982-1725001 MsG0380011578.01.T01:intron 25.0%
!! ATAGTCCTTTTATATTTGTC+TGG - Chr3:1727999-1728018 MsG0380011578.01.T01:intron 25.0%
!! CATAAATAACTTGCATCAAA+TGG + Chr3:1725376-1725395 None:intergenic 25.0%
!! CTCTATGTTTCTTTTTGATA+AGG - Chr3:1723387-1723406 MsG0380011578.01.T01:CDS 25.0%
!! CTTTATTCGTCTTGATAATT+TGG - Chr3:1726373-1726392 MsG0380011578.01.T01:CDS 25.0%
!! TACATTAGTTTAATTCTAGC+TGG - Chr3:1726617-1726636 MsG0380011578.01.T01:intron 25.0%
!! TTTTCAAAGTTAGCGAAATA+AGG - Chr3:1723693-1723712 MsG0380011578.01.T01:CDS 25.0%
!! TTTTGTATAAGAAAGACTGA+AGG - Chr3:1726403-1726422 MsG0380011578.01.T01:CDS 25.0%
!!! AAGTATTGGACATAAGTTAT+TGG + Chr3:1725239-1725258 None:intergenic 25.0%
!!! AAGTATTGGACTTAAGTTAT+TGG - Chr3:1724981-1725000 MsG0380011578.01.T01:intron 25.0%
!!! AATTTTAGTCACCTAGTTAT+GGG - Chr3:1726551-1726570 MsG0380011578.01.T01:intron 25.0%
!!! CATTGTTGTCTTATTTTAAC+AGG - Chr3:1725956-1725975 MsG0380011578.01.T01:intron 25.0%
!!! CTGTTTTTTTTTTTTTGGTG+TGG - Chr3:1726044-1726063 MsG0380011578.01.T01:intron 25.0%
!!! GAACTTTGATTTGATGAATT+GGG - Chr3:1722218-1722237 MsG0380011578.01.T01:three_prime_UTR 25.0%
!!! GAATTTTGGTTTGATGAATT+GGG - Chr3:1722807-1722826 MsG0380011578.01.T01:intron 25.0%
!!! TACATTCTTGTCGTTTTATA+TGG - Chr3:1725603-1725622 MsG0380011578.01.T01:intron 25.0%
!!! TGAACTTTGATTTGATGAAT+TGG - Chr3:1722217-1722236 MsG0380011578.01.T01:three_prime_UTR 25.0%
!!! TGAATTTTGGTTTGATGAAT+TGG - Chr3:1722806-1722825 MsG0380011578.01.T01:intron 25.0%
!!! TTAAGTTCTAAATGCTTGTA+AGG + Chr3:1726523-1726542 None:intergenic 25.0%
!!! TTTGTTTTGGATTGTTTTGT+TGG - Chr3:1723055-1723074 MsG0380011578.01.T01:CDS 25.0%
!!! TTTTGGTTTAACTAAGGATT+TGG + Chr3:1726127-1726146 None:intergenic 25.0%
!!! TTTTTTCTCGAAGATTATAC+CGG - Chr3:1727592-1727611 MsG0380011578.01.T01:intron 25.0%
AAACAGTATTCTAACAGGTA+AGG + Chr3:1726030-1726049 None:intergenic 30.0%
AACGTCAAATTCAAAACCAA+TGG + Chr3:1724845-1724864 None:intergenic 30.0%
AAGAAGCTTATGAATATCTC+TGG + Chr3:1727122-1727141 None:intergenic 30.0%
AAGGACCAGACAAATATAAA+AGG + Chr3:1728007-1728026 None:intergenic 30.0%
AATTACTGTAAATACGCCAT+TGG + Chr3:1723619-1723638 None:intergenic 30.0%
ACATAGTAGTCTAACATATC+AGG + Chr3:1726798-1726817 None:intergenic 30.0%
AGACAACAATGTATCTGAAT+CGG + Chr3:1725947-1725966 None:intergenic 30.0%
AGACATGTGTAACTAATAAG+TGG + Chr3:1724322-1724341 None:intergenic 30.0%
AGAGATATTCATAAGCTTCT+TGG - Chr3:1727121-1727140 MsG0380011578.01.T01:intron 30.0%
AGCAAATTCAAGATCAGAAA+AGG + Chr3:1726889-1726908 None:intergenic 30.0%
ATCTAAAAGACTATGTTCGA+TGG - Chr3:1724121-1724140 MsG0380011578.01.T01:intron 30.0%
ATCTAAATCTTCCATTGCAT+CGG + Chr3:1724156-1724175 None:intergenic 30.0%
ATGTGATGAAGAAACAATTG+TGG - Chr3:1724407-1724426 MsG0380011578.01.T01:intron 30.0%
ATTAAGAACATTTGAGGGAA+AGG - Chr3:1723490-1723509 MsG0380011578.01.T01:CDS 30.0%
ATTGTCTCTTACAAAATGAC+TGG + Chr3:1726168-1726187 None:intergenic 30.0%
CAATAGCTTAACATTACAAG+AGG - Chr3:1725159-1725178 MsG0380011578.01.T01:intron 30.0%
CAATAGCTTAACATTACAAG+AGG + Chr3:1725178-1725159 None:intergenic 30.0%
CCACATATTTACTATGTAAG+TGG - Chr3:1726281-1726300 MsG0380011578.01.T01:intron 30.0%
CCACTTACATAGTAAATATG+TGG + Chr3:1726284-1726303 None:intergenic 30.0%
CTACAACTTGCAAAAAAGAT+GGG - Chr3:1724063-1724082 MsG0380011578.01.T01:intron 30.0%
CTCTTGTAATGTTAAGCTAT+TGG - Chr3:1725062-1725081 MsG0380011578.01.T01:intron 30.0%
CTCTTGTAATGTTAAGCTAT+TGG + Chr3:1725081-1725062 None:intergenic 30.0%
GAAAAGAAATATGCAGTAGT+TGG - Chr3:1724635-1724654 MsG0380011578.01.T01:intron 30.0%
GAATAAGATCCATGAAATGA+AGG + Chr3:1724493-1724512 None:intergenic 30.0%
GCATTTACATTATGATGTGA+AGG + Chr3:1727962-1727981 None:intergenic 30.0%
GGAAGATCGTATAACAAATT+TGG + Chr3:1726915-1726934 None:intergenic 30.0%
GTAATCGACTAATTCTATGA+AGG + Chr3:1728274-1728293 None:intergenic 30.0%
GTCAGAATTAAGAACATTTG+AGG - Chr3:1723484-1723503 MsG0380011578.01.T01:CDS 30.0%
TAAAATCGCGAATGATGTAT+AGG + Chr3:1727900-1727919 None:intergenic 30.0%
TAATGACTTCAATGTTTGGA+GGG - Chr3:1723724-1723743 MsG0380011578.01.T01:CDS 30.0%
TACCACCATTAAGATATGTT+TGG + Chr3:1724187-1724206 None:intergenic 30.0%
TCAAATTTCTCTGCGATAAT+CGG + Chr3:1728208-1728227 None:intergenic 30.0%
TCAGAAATAGCTATGATTCT+GGG - Chr3:1728376-1728395 MsG0380011578.01.T01:intron 30.0%
TCATGCCAAACATATCTTAA+TGG - Chr3:1724179-1724198 MsG0380011578.01.T01:intron 30.0%
TGATATGTTAGACTACTATG+TGG - Chr3:1726797-1726816 MsG0380011578.01.T01:intron 30.0%
TGTAACAAGTGTGTAAACTT+TGG - Chr3:1726695-1726714 MsG0380011578.01.T01:intron 30.0%
TGTGATGAAGAAACAATTGT+GGG - Chr3:1724408-1724427 MsG0380011578.01.T01:intron 30.0%
TTAATGACTTCAATGTTTGG+AGG - Chr3:1723723-1723742 MsG0380011578.01.T01:CDS 30.0%
TTAGTAAGTTAGAGTCCATT+AGG - Chr3:1725013-1725032 MsG0380011578.01.T01:intron 30.0%
TTAGTAAGTTAGAGTCCATT+AGG + Chr3:1725032-1725013 None:intergenic 30.0%
TTCAGAAATAGCTATGATTC+TGG - Chr3:1728375-1728394 MsG0380011578.01.T01:intron 30.0%
TTCTTACAGGTTAAATGCAA+AGG - Chr3:1723953-1723972 MsG0380011578.01.T01:intron 30.0%
TTTCTTCATCACATGACATT+TGG + Chr3:1724401-1724420 None:intergenic 30.0%
! AATTCCAGTTTTACTTGACA+AGG - Chr3:1727425-1727444 MsG0380011578.01.T01:intron 30.0%
! AATTGGGTTTTGCTTAATTG+CGG - Chr3:1722234-1722253 MsG0380011578.01.T01:three_prime_UTR 30.0%
! AGTAAGAAGCATATAAGTTG+AGG - Chr3:1726096-1726115 MsG0380011578.01.T01:CDS 30.0%
! ATTAGTTTAATTCTAGCTGG+TGG - Chr3:1726620-1726639 MsG0380011578.01.T01:intron 30.0%
! ATTGGGTTTTTGCTTAATTG+CGG - Chr3:1722489-1722508 MsG0380011578.01.T01:intron 30.0%
! ATTGGGTTTTTGCTTAATTG+TGG - Chr3:1722489-1722508 MsG0380011578.01.T01:intron 30.0%
! CATCGTAACTTATTTGAAAC+AGG - Chr3:1725991-1726010 MsG0380011578.01.T01:intron 30.0%
! CTGCTTGATATATAGTTTTC+TGG - Chr3:1725423-1725442 MsG0380011578.01.T01:intron 30.0%
! GATATACTTATGTCCAGTTT+TGG + Chr3:1726456-1726475 None:intergenic 30.0%
! GATTTCTTTACTTCCCTTTT+TGG - Chr3:1728153-1728172 MsG0380011578.01.T01:intron 30.0%
! TCAAACTTTTGTTCATGTTC+AGG - Chr3:1728060-1728079 MsG0380011578.01.T01:intron 30.0%
! TTGGTCTTCATTATAAGACA+GGG - Chr3:1726192-1726211 MsG0380011578.01.T01:intron 30.0%
! TTTTCTGATCTTGAATTTGC+TGG - Chr3:1726888-1726907 MsG0380011578.01.T01:intron 30.0%
! TTTTTCTCGAAGATTATACC+GGG - Chr3:1727593-1727612 MsG0380011578.01.T01:intron 30.0%
!! ACTTCTTTGATTTGTGAGTT+AGG - Chr3:1725744-1725763 MsG0380011578.01.T01:intron 30.0%
!! ATTGGTCTTCATTATAAGAC+AGG - Chr3:1726191-1726210 MsG0380011578.01.T01:intron 30.0%
!! CAATTTTAGTCACCTAGTTA+TGG - Chr3:1726550-1726569 MsG0380011578.01.T01:intron 30.0%
!!! ATTGGTTTTGAATTTGACGT+TGG - Chr3:1724844-1724863 MsG0380011578.01.T01:intron 30.0%
!!! CGAAGGCATTTATTCTTTTT+GGG + Chr3:1724238-1724257 None:intergenic 30.0%
!!! CTTACCTTTTGGTTTAACTA+AGG + Chr3:1726133-1726152 None:intergenic 30.0%
!!! CTTGTCGTTTTATATGGTTT+AGG - Chr3:1725609-1725628 MsG0380011578.01.T01:intron 30.0%
!!! TCGAAGGCATTTATTCTTTT+TGG + Chr3:1724239-1724258 None:intergenic 30.0%
!!! TTGGTTTTGAATTTGACGTT+GGG - Chr3:1724845-1724864 MsG0380011578.01.T01:intron 30.0%
AAAAGACTATGTTCGATGGT+TGG - Chr3:1724125-1724144 MsG0380011578.01.T01:intron 35.0%
AATCTGCACAACCATTGAAT+GGG + Chr3:1724446-1724465 None:intergenic 35.0%
AATGACTTCAATGTTTGGAG+GGG - Chr3:1723725-1723744 MsG0380011578.01.T01:CDS 35.0%
ACAGAGGCTGTGTTAATTAA+TGG - Chr3:1728502-1728521 MsG0380011578.01.T01:five_prime_UTR 35.0%
ACATTGAACCATGAAGAATC+AGG + Chr3:1727014-1727033 None:intergenic 35.0%
ACCAAAGATTTGACAGTTCT+TGG - Chr3:1727645-1727664 MsG0380011578.01.T01:intron 35.0%
ACCATCCAAATCAAGAACAA+GGG + Chr3:1727216-1727235 None:intergenic 35.0%
AGAATAAATGCCTTCGATCT+TGG - Chr3:1724242-1724261 MsG0380011578.01.T01:intron 35.0%
AGAGAAACAAACCATAGCTT+AGG - Chr3:1722096-1722115 MsG0380011578.01.T01:three_prime_UTR 35.0%
AGAGAGCTAAAAGAAGATGA+GGG - Chr3:1722943-1722962 MsG0380011578.01.T01:CDS 35.0%
ATCAACGAGTTTCTCCAAAA+AGG + Chr3:1728170-1728189 None:intergenic 35.0%
ATTCGATAGTAGAAACGGTA+AGG - Chr3:1724463-1724482 MsG0380011578.01.T01:intron 35.0%
ATTGATGCCAGCAGTTAAAA+TGG - Chr3:1724028-1724047 MsG0380011578.01.T01:intron 35.0%
ATTGTGGTTTCTCATGAACT+TGG - Chr3:1722505-1722524 MsG0380011578.01.T01:intron 35.0%
CAGAAATAGCTATGATTCTG+GGG - Chr3:1728377-1728396 MsG0380011578.01.T01:intron 35.0%
CAGAGGCTGTGTTAATTAAT+GGG - Chr3:1728503-1728522 MsG0380011578.01.T01:five_prime_UTR 35.0%
CCTACAACTTGCAAAAAAGA+TGG - Chr3:1724062-1724081 MsG0380011578.01.T01:intron 35.0%
CTAAAATGTGCAAGACAACT+AGG + Chr3:1728338-1728357 None:intergenic 35.0%
CTAAGTGACATTGCAATAGA+GGG - Chr3:1723231-1723250 MsG0380011578.01.T01:intron 35.0%
CTATTATAACATGAAGACGG+AGG + Chr3:1727720-1727739 None:intergenic 35.0%
CTCCGTCTTCATGTTATAAT+AGG - Chr3:1727718-1727737 MsG0380011578.01.T01:intron 35.0%
CTTTGAGCAAACATAGTAAC+TGG + Chr3:1725523-1725542 None:intergenic 35.0%
GAAATCAAAGCAGAATCAGA+TGG + Chr3:1728139-1728158 None:intergenic 35.0%
GAATCGTGGTTTGATCAATT+GGG - Chr3:1722472-1722491 MsG0380011578.01.T01:intron 35.0%
GATATTCATAAGCTTCTTGG+AGG - Chr3:1727124-1727143 MsG0380011578.01.T01:intron 35.0%
GTGATGAAGAAACAATTGTG+GGG - Chr3:1724409-1724428 MsG0380011578.01.T01:intron 35.0%
TAAGCAAGGAGACAAGTAAA+AGG - Chr3:1727180-1727199 MsG0380011578.01.T01:intron 35.0%
TACCATCCAAATCAAGAACA+AGG + Chr3:1727217-1727236 None:intergenic 35.0%
TACTCCTTGTCAAGTAAAAC+TGG + Chr3:1727432-1727451 None:intergenic 35.0%
TAGAGAGCTAAAAGAAGATG+AGG - Chr3:1722942-1722961 MsG0380011578.01.T01:CDS 35.0%
TATCCATTAGACCCATAACT+AGG + Chr3:1726565-1726584 None:intergenic 35.0%
TCAACGAGTTTCTCCAAAAA+GGG + Chr3:1728169-1728188 None:intergenic 35.0%
TCACTGAAAAGGGTCAAAAA+AGG + Chr3:1722713-1722732 None:intergenic 35.0%
TCAGACTGCAAGTTAACAAT+GGG - Chr3:1728086-1728105 MsG0380011578.01.T01:intron 35.0%
TCATCAAACCAACTCTCAAT+AGG + Chr3:1728115-1728134 None:intergenic 35.0%
TCCAAGAACTGTCAAATCTT+TGG + Chr3:1727649-1727668 None:intergenic 35.0%
TGAATCGTGGTTTGATCAAT+TGG - Chr3:1722471-1722490 MsG0380011578.01.T01:intron 35.0%
TGCAGATTCGATAGTAGAAA+CGG - Chr3:1724458-1724477 MsG0380011578.01.T01:intron 35.0%
TGCCAAACATATCTTAATGG+TGG - Chr3:1724182-1724201 MsG0380011578.01.T01:intron 35.0%
TGTTACCCTTGTTCTTGATT+TGG - Chr3:1727208-1727227 MsG0380011578.01.T01:intron 35.0%
TTCAGACTGCAAGTTAACAA+TGG - Chr3:1728085-1728104 MsG0380011578.01.T01:intron 35.0%
TTGACTCATTGTGAGTTTGA+GGG - Chr3:1724942-1724961 MsG0380011578.01.T01:intron 35.0%
TTGACTCATTGTGAGTTTGA+GGG + Chr3:1724961-1724942 None:intergenic 35.0%
TTTGCAAGTTGTAGGAGATT+TGG + Chr3:1724057-1724076 None:intergenic 35.0%
TTTGGTCTCTGCAGTTAATA+AGG - Chr3:1726713-1726732 MsG0380011578.01.T01:intron 35.0%
! AAGCTTTTTAGACCTTTTCG+TGG - Chr3:1723575-1723594 MsG0380011578.01.T01:CDS 35.0%
! AGCTTTTTAGACCTTTTCGT+GGG - Chr3:1723576-1723595 MsG0380011578.01.T01:CDS 35.0%
! ATGTCACTTAGCTATGTTCA+CGG + Chr3:1723222-1723241 None:intergenic 35.0%
! ATTGATCAAAGCACCAAAAC+TGG - Chr3:1726440-1726459 MsG0380011578.01.T01:CDS 35.0%
! CGAGAAAAAAGTTTTCTGTC+AGG + Chr3:1727582-1727601 None:intergenic 35.0%
! GGTAGTATCTTCTTACCTTT+TGG + Chr3:1726144-1726163 None:intergenic 35.0%
! GGTCCTTTATTTATTGCCTA+TGG - Chr3:1728020-1728039 MsG0380011578.01.T01:intron 35.0%
! GTTATGGGTCTAATGGATAT+TGG - Chr3:1726566-1726585 MsG0380011578.01.T01:intron 35.0%
! GTTCTAAATGCTTGTAAGGA+TGG + Chr3:1726519-1726538 None:intergenic 35.0%
! TATGTGGATGAAGCATTCTT+CGG - Chr3:1726813-1726832 MsG0380011578.01.T01:intron 35.0%
! TGTATTTGTGTTTGGGGTTT+GGG - Chr3:1723346-1723365 MsG0380011578.01.T01:CDS 35.0%
! TTGTATTTGTGTTTGGGGTT+TGG - Chr3:1723345-1723364 MsG0380011578.01.T01:CDS 35.0%
! TTTAAAGTGGACACTCCATT+GGG + Chr3:1723543-1723562 None:intergenic 35.0%
! TTTATGGCAGGATTCTTTTC+CGG - Chr3:1725903-1725922 MsG0380011578.01.T01:intron 35.0%
! TTTCTTTTTGATAAGGCCTG+AGG - Chr3:1723394-1723413 MsG0380011578.01.T01:CDS 35.0%
!! AAGAAAGTGCACAGATTTTG+TGG - Chr3:1723124-1723143 MsG0380011578.01.T01:CDS 35.0%
!! GTCATCTAAATGAGGCATTT+TGG + Chr3:1727849-1727868 None:intergenic 35.0%
!! GTTTTGGATTGTTTTGTTGG+CGG - Chr3:1723058-1723077 MsG0380011578.01.T01:CDS 35.0%
!! TTTTGGATTGTTTTGTTGGC+GGG - Chr3:1723059-1723078 MsG0380011578.01.T01:CDS 35.0%
!!! AGTTTTGGTGCTTTGATCAA+TGG + Chr3:1726441-1726460 None:intergenic 35.0%
!!! CCATCTTTTTTGCAAGTTGT+AGG + Chr3:1724065-1724084 None:intergenic 35.0%
!!! TTTTAAAGTGGACACTCCAT+TGG + Chr3:1723544-1723563 None:intergenic 35.0%
AACACTGATCCACTCTACAA+TGG - Chr3:1727374-1727393 MsG0380011578.01.T01:intron 40.0%
AACCATGAAGAATCAGGCAT+TGG + Chr3:1727008-1727027 None:intergenic 40.0%
AACCATGTGTCGTGTCATAT+TGG + Chr3:1724736-1724755 None:intergenic 40.0%
AAGAACAGTCTCCCATTCAA+TGG - Chr3:1724432-1724451 MsG0380011578.01.T01:intron 40.0%
AAGATCAGTCCTCATTTGTG+GGG - Chr3:1724596-1724615 MsG0380011578.01.T01:CDS 40.0%
ACAAGATCAGTCCTCATTTG+TGG - Chr3:1724594-1724613 MsG0380011578.01.T01:CDS 40.0%
ACACTGTCTATGTGCGAAAA+AGG - Chr3:1727451-1727470 MsG0380011578.01.T01:intron 40.0%
AGAAACACGTACCTAAGCTA+TGG + Chr3:1722110-1722129 None:intergenic 40.0%
ATACTCTCTCCAAAAACTCG+TGG + Chr3:1727485-1727504 None:intergenic 40.0%
ATCTACATCAGAAAACTGCC+TGG + Chr3:1723854-1723873 None:intergenic 40.0%
ATGAGTCAGAGAAGCGAAAA+GGG + Chr3:1722010-1722029 None:intergenic 40.0%
ATGGGATTCCTATTGAGAGT+TGG - Chr3:1728104-1728123 MsG0380011578.01.T01:intron 40.0%
ATGTTCTTCAGTAAGTGGCT+TGG + Chr3:1727051-1727070 None:intergenic 40.0%
CAACTTGCAAAAAAGATGGG+AGG - Chr3:1724066-1724085 MsG0380011578.01.T01:intron 40.0%
CAAGATCAGTCCTCATTTGT+GGG - Chr3:1724595-1724614 MsG0380011578.01.T01:CDS 40.0%
CACATATATGACCCACGAAA+AGG + Chr3:1723590-1723609 None:intergenic 40.0%
CATATATGTGGATAGGCCAA+TGG - Chr3:1723600-1723619 MsG0380011578.01.T01:CDS 40.0%
CATATTTCGCCATTGTAGAG+TGG + Chr3:1727386-1727405 None:intergenic 40.0%
CTTACTGAACTACAGTACAG+AGG - Chr3:1728486-1728505 MsG0380011578.01.T01:five_prime_UTR 40.0%
CTTCACAGGATCCTACATAT+TGG + Chr3:1726974-1726993 None:intergenic 40.0%
GAATCTGCACAACCATTGAA+TGG + Chr3:1724447-1724466 None:intergenic 40.0%
GACATTGCAGAAACAGAAAC+CGG + Chr3:1725925-1725944 None:intergenic 40.0%
GACTAATTCTATGAAGGGCA+AGG + Chr3:1728268-1728287 None:intergenic 40.0%
GATTCGTGCATCTATCAAGA+TGG - Chr3:1727615-1727634 MsG0380011578.01.T01:intron 40.0%
GCAAAGGACAATCTGTCAAT+AGG - Chr3:1723969-1723988 MsG0380011578.01.T01:intron 40.0%
GCATCATGTTCTTCAGTAAG+TGG + Chr3:1727056-1727075 None:intergenic 40.0%
GCTAAGTGACATTGCAATAG+AGG - Chr3:1723230-1723249 MsG0380011578.01.T01:intron 40.0%
GGGATCAATCCATTTGATGA+TGG - Chr3:1726849-1726868 MsG0380011578.01.T01:intron 40.0%
GTATCTGCATAGTGTTTCAC+TGG - Chr3:1724813-1724832 MsG0380011578.01.T01:intron 40.0%
GTATTTGCTTTGCGTAGTTG+TGG - Chr3:1722622-1722641 MsG0380011578.01.T01:intron 40.0%
GTCTCTTACAAAATGACTGG+AGG + Chr3:1726165-1726184 None:intergenic 40.0%
TAACAGGTAAGGCTTCAAGT+GGG + Chr3:1726019-1726038 None:intergenic 40.0%
TAAGGCTCACCTTCATTTCA+TGG - Chr3:1724481-1724500 MsG0380011578.01.T01:intron 40.0%
TAATTCTATGAAGGGCAAGG+AGG + Chr3:1728265-1728284 None:intergenic 40.0%
TACCAATATGACACGACACA+TGG - Chr3:1724731-1724750 MsG0380011578.01.T01:intron 40.0%
TAGTCGAGACCATCATCAAA+TGG + Chr3:1726861-1726880 None:intergenic 40.0%
TAGTTACACATGTCTGATGC+AGG - Chr3:1724327-1724346 MsG0380011578.01.T01:intron 40.0%
TCAAATGGCACGCATGAATT+CGG + Chr3:1725361-1725380 None:intergenic 40.0%
TCACCTAGTTATGGGTCTAA+TGG - Chr3:1726559-1726578 MsG0380011578.01.T01:intron 40.0%
TGCTTCTATGCTTTCGTCAA+GGG + Chr3:1726943-1726962 None:intergenic 40.0%
TTACTGAAGAACATGATGCC+AGG - Chr3:1727057-1727076 MsG0380011578.01.T01:intron 40.0%
TTACTTGATGTCTGCAATGC+AGG - Chr3:1725545-1725564 MsG0380011578.01.T01:intron 40.0%
TTTGGAGAAACTCGTTGATG+TGG - Chr3:1728171-1728190 MsG0380011578.01.T01:intron 40.0%
! ATCGGCTCTTTGCTTAATTG+TGG - Chr3:1722355-1722374 MsG0380011578.01.T01:CDS 40.0%
! ATGTGGATGAAGCATTCTTC+GGG - Chr3:1726814-1726833 MsG0380011578.01.T01:intron 40.0%
! CTTTTCGTGGGTCATATATG+TGG - Chr3:1723588-1723607 MsG0380011578.01.T01:CDS 40.0%
! GTATTTGTGTTTGGGGTTTG+GGG - Chr3:1723347-1723366 MsG0380011578.01.T01:CDS 40.0%
! GTTCAATGTCATTTGCCATC+AGG - Chr3:1727025-1727044 MsG0380011578.01.T01:intron 40.0%
! GTTGACTCATTGTGAGTTTG+AGG - Chr3:1724941-1724960 MsG0380011578.01.T01:intron 40.0%
! GTTGACTCATTGTGAGTTTG+AGG + Chr3:1724960-1724941 None:intergenic 40.0%
! TGTCACTTAGCTATGTTCAC+GGG + Chr3:1723221-1723240 None:intergenic 40.0%
!! ACCCTTGTTCTTGATTTGGA+TGG - Chr3:1727212-1727231 MsG0380011578.01.T01:intron 40.0%
!! GATGAGGGTGTGTAGATTTT+TGG - Chr3:1722958-1722977 MsG0380011578.01.T01:CDS 40.0%
!! TCTTCGGGTTTTCTAGTGAT+GGG - Chr3:1726829-1726848 MsG0380011578.01.T01:intron 40.0%
!! TTCTTCGGGTTTTCTAGTGA+TGG - Chr3:1726828-1726847 MsG0380011578.01.T01:intron 40.0%
!! TTTGACTTCTGAGACACATG+AGG + Chr3:1724095-1724114 None:intergenic 40.0%
!!! CTACTATGGCTACTTTTGCT+AGG + Chr3:1727677-1727696 None:intergenic 40.0%
!!! TGGCTTGTTTTACTGTGTGT+TGG - Chr3:1723087-1723106 MsG0380011578.01.T01:CDS 40.0%
AATGCCTTCGATCTTGGCAT+TGG - Chr3:1724248-1724267 MsG0380011578.01.T01:intron 45.0%
AATGTGCAAGACAACTAGGC+AGG + Chr3:1728334-1728353 None:intergenic 45.0%
AATTGCTGACCACAAGCACT+TGG - Chr3:1723422-1723441 MsG0380011578.01.T01:CDS 45.0%
ACACTATGCAGATACGACAC+TGG + Chr3:1724808-1724827 None:intergenic 45.0%
ACCCCTTGAGGTGAATAAGT+GGG + Chr3:1723279-1723298 None:intergenic 45.0%
AGAATCAAGCTGACATGACC+TGG + Chr3:1727078-1727097 None:intergenic 45.0%
AGCCAATGCCTGATTCTTCA+TGG - Chr3:1727003-1727022 MsG0380011578.01.T01:intron 45.0%
AGGATCCTGTGAAGAGTTTC+AGG - Chr3:1726980-1726999 MsG0380011578.01.T01:intron 45.0%
AGGTGAATAAGTGGGGAATC+CGG + Chr3:1723271-1723290 None:intergenic 45.0%
ATACTCATGCCCCACAAATG+AGG + Chr3:1724608-1724627 None:intergenic 45.0%
ATGTGCAAGACAACTAGGCA+GGG + Chr3:1728333-1728352 None:intergenic 45.0%
CATAGTAGACAACTCTCCTC+AGG - Chr3:1727689-1727708 MsG0380011578.01.T01:intron 45.0%
CGTGGGTCATATATGTGGAT+AGG - Chr3:1723593-1723612 MsG0380011578.01.T01:CDS 45.0%
CTAACAGGTAAGGCTTCAAG+TGG + Chr3:1726020-1726039 None:intergenic 45.0%
CTGAGGAGAGTTGTCTACTA+TGG + Chr3:1727691-1727710 None:intergenic 45.0%
CTGCTTCTATGCTTTCGTCA+AGG + Chr3:1726944-1726963 None:intergenic 45.0%
CTTGATAGATGCACGAATCC+CGG + Chr3:1727614-1727633 None:intergenic 45.0%
GATGAGTCAGAGAAGCGAAA+AGG + Chr3:1722011-1722030 None:intergenic 45.0%
GATGCCAGCAGTTAAAATGG+TGG - Chr3:1724031-1724050 MsG0380011578.01.T01:intron 45.0%
GCAGCAAGCTACCAATATGT+AGG - Chr3:1726960-1726979 MsG0380011578.01.T01:intron 45.0%
GGTCAGCAATTTAGATCCTC+AGG + Chr3:1723413-1723432 None:intergenic 45.0%
GTCACTTAGCTATGTTCACG+GGG + Chr3:1723220-1723239 None:intergenic 45.0%
TAACTGCTGGCATCAATGCT+GGG + Chr3:1724025-1724044 None:intergenic 45.0%
TACTAGAGCTGGCAATGAGT+TGG + Chr3:1727162-1727181 None:intergenic 45.0%
TCCAAAAACTCGTGGAGGAA+GGG + Chr3:1727477-1727496 None:intergenic 45.0%
TCCCCACTTATTCACCTCAA+GGG - Chr3:1723274-1723293 MsG0380011578.01.T01:intron 45.0%
TGAGTCAGAGAAGCGAAAAG+GGG + Chr3:1722009-1722028 None:intergenic 45.0%
TGTCAAGTAGCCAAATAGCC+AGG + Chr3:1723307-1723326 None:intergenic 45.0%
TTAACTGCTGGCATCAATGC+TGG + Chr3:1724026-1724045 None:intergenic 45.0%
TTCCCCACTTATTCACCTCA+AGG - Chr3:1723273-1723292 MsG0380011578.01.T01:intron 45.0%
TTCTCCAATGCCAAGATCGA+AGG + Chr3:1724255-1724274 None:intergenic 45.0%
! ATTGCCAGCTCTAGTAAGCA+AGG - Chr3:1727166-1727185 MsG0380011578.01.T01:intron 45.0%
! GTATCGACACTGACACATGT+TGG + Chr3:1724714-1724733 None:intergenic 45.0%
! GTGGATCAGTGTTTCTGTGA+AGG + Chr3:1727367-1727386 None:intergenic 45.0%
! GTTTCACTGGTTGATGCCAT+TGG - Chr3:1724826-1724845 MsG0380011578.01.T01:intron 45.0%
!! ATGCTTTCGTCAAGGGTACT+AGG + Chr3:1726936-1726955 None:intergenic 45.0%
!!! CAGGGTCATTTTGACTGATG+CGG + Chr3:1728315-1728334 None:intergenic 45.0%
!!! TTGGCCACCATTTTAACTGC+TGG + Chr3:1724038-1724057 None:intergenic 45.0%
!! AATAATAATTTAAAAGAAAA+TGG + Chr3:1724773-1724792 None:intergenic 5.0%
!! TGAAATAAATTAATAAATTA+AGG + Chr3:1727297-1727316 None:intergenic 5.0%
!!! ATTTTCTTTTAAATTATTAT+TGG - Chr3:1724772-1724791 MsG0380011578.01.T01:intron 5.0%
!!! TAAAAAATAAAATTTTAAAG+TGG + Chr3:1723556-1723575 None:intergenic 5.0%
!!! TTAATTTTTATTCTTAATTT+TGG - Chr3:1722885-1722904 MsG0380011578.01.T01:CDS 5.0%
!!! TTATTTTTTAATTTTTGTTT+TGG - Chr3:1723042-1723061 MsG0380011578.01.T01:CDS 5.0%
CACCCCTTGAGGTGAATAAG+TGG + Chr3:1723280-1723299 None:intergenic 50.0%
CATTGGGAGCTAAGGACATG+AGG + Chr3:1723527-1723546 None:intergenic 50.0%
CCCCACTTATTCACCTCAAG+GGG - Chr3:1723275-1723294 MsG0380011578.01.T01:intron 50.0%
CCCCTTGAGGTGAATAAGTG+GGG + Chr3:1723278-1723297 None:intergenic 50.0%
CTCATGTCCTTAGCTCCCAA+TGG - Chr3:1723525-1723544 MsG0380011578.01.T01:CDS 50.0%
CTCCAAAAACTCGTGGAGGA+AGG + Chr3:1727478-1727497 None:intergenic 50.0%
CTCTCTCCAAAAACTCGTGG+AGG + Chr3:1727482-1727501 None:intergenic 50.0%
GAAGACGGAGGAAATACCTG+AGG + Chr3:1727708-1727727 None:intergenic 50.0%
GACCACAAGCACTTGGTTGA+GGG - Chr3:1723429-1723448 MsG0380011578.01.T01:CDS 50.0%
GAGAAGCGAAAAGGGGTCAA+TGG + Chr3:1722002-1722021 None:intergenic 50.0%
GGGGTGATATCCTGGCTATT+TGG - Chr3:1723294-1723313 MsG0380011578.01.T01:intron 50.0%
GGTGAATAAGTGGGGAATCC+GGG + Chr3:1723270-1723289 None:intergenic 50.0%
GGTTGGAGTAACCGATGCAA+TGG - Chr3:1724142-1724161 MsG0380011578.01.T01:intron 50.0%
GTCTCCTTGCTTACTAGAGC+TGG + Chr3:1727173-1727192 None:intergenic 50.0%
GTGAATAAGTGGGGAATCCG+GGG + Chr3:1723269-1723288 None:intergenic 50.0%
TGACCACAAGCACTTGGTTG+AGG - Chr3:1723428-1723447 MsG0380011578.01.T01:CDS 50.0%
TGGCTCCTGAAACTCTTCAC+AGG + Chr3:1726988-1727007 None:intergenic 50.0%
TTACTGTCATCCGCTCGATC+AGG + Chr3:1726756-1726775 None:intergenic 50.0%
!!! TGTTTTGTTGGCGGGTTCTG+TGG - Chr3:1723067-1723086 MsG0380011578.01.T01:CDS 50.0%
AGCCAGGATATCACCCCTTG+AGG + Chr3:1723291-1723310 None:intergenic 55.0%
ATCTACCCCCATCATGCCCT+AGG + Chr3:1723463-1723482 None:intergenic 55.0%
CACCTCAAGGGGTGATATCC+TGG - Chr3:1723286-1723305 MsG0380011578.01.T01:intron 55.0%
CCATCATGCCCTAGGCATAG+GGG + Chr3:1723455-1723474 None:intergenic 55.0%
CCCATCATGCCCTAGGCATA+GGG + Chr3:1723456-1723475 None:intergenic 55.0%
CCCTATGCCTAGGGCATGAT+GGG - Chr3:1723453-1723472 MsG0380011578.01.T01:CDS 55.0%
CCTATGCCTAGGGCATGATG+GGG - Chr3:1723454-1723473 MsG0380011578.01.T01:CDS 55.0%
CTATGCCTAGGGCATGATGG+GGG - Chr3:1723455-1723474 MsG0380011578.01.T01:CDS 55.0%
GACATTGCAATAGAGGGCCG+TGG - Chr3:1723237-1723256 MsG0380011578.01.T01:intron 55.0%
GACTAACCCACCTGATCGAG+CGG - Chr3:1726743-1726762 MsG0380011578.01.T01:intron 55.0%
GGACACTCCATTGGGAGCTA+AGG + Chr3:1723535-1723554 None:intergenic 55.0%
TGCAATAGAGGGCCGTGGTT+CGG - Chr3:1723242-1723261 MsG0380011578.01.T01:intron 55.0%
TGTCATCCGCTCGATCAGGT+GGG + Chr3:1726752-1726771 None:intergenic 55.0%
! CAGTAAGTGGCTTGGCCTGA+TGG + Chr3:1727043-1727062 None:intergenic 55.0%
! GCCCTTCCTCCACGAGTTTT+TGG - Chr3:1727473-1727492 MsG0380011578.01.T01:intron 55.0%
! TAGGGCATGATGGGGGTAGA+TGG - Chr3:1723462-1723481 MsG0380011578.01.T01:CDS 55.0%
CCCCATCATGCCCTAGGCAT+AGG + Chr3:1723457-1723476 None:intergenic 60.0%
CCCCTATGCCTAGGGCATGA+TGG - Chr3:1723452-1723471 MsG0380011578.01.T01:CDS 60.0%
CTGTCATCCGCTCGATCAGG+TGG + Chr3:1726753-1726772 None:intergenic 60.0%
GGCCCTCAACCAAGTGCTTG+TGG + Chr3:1723434-1723453 None:intergenic 60.0%
GTTGAGGGCCCCTATGCCTA+GGG - Chr3:1723444-1723463 MsG0380011578.01.T01:CDS 60.0%
GGAATCCGGGGTCCGAACCA+CGG + Chr3:1723257-1723276 None:intergenic 65.0%
GGTTGAGGGCCCCTATGCCT+AGG - Chr3:1723443-1723462 MsG0380011578.01.T01:CDS 65.0%
! GAGGGCCGTGGTTCGGACCC+CGG - Chr3:1723249-1723268 MsG0380011578.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 1721991 1728539 1721991 ID=MsG0380011578.01;Name=MsG0380011578.01
Chr3 mRNA 1721991 1728539 1721991 ID=MsG0380011578.01.T01;Parent=MsG0380011578.01;Name=MsG0380011578.01.T01;_AED=0.37;_eAED=0.37;_QI=197|1|1|1|0.83|0.71|7|296|469
Chr3 exon 1721991 1722448 1721991 ID=MsG0380011578.01.T01:exon:1277;Parent=MsG0380011578.01.T01
Chr3 exon 1722820 1723157 1722820 ID=MsG0380011578.01.T01:exon:1276;Parent=MsG0380011578.01.T01
Chr3 exon 1723297 1723803 1723297 ID=MsG0380011578.01.T01:exon:1275;Parent=MsG0380011578.01.T01
Chr3 exon 1724518 1724617 1724518 ID=MsG0380011578.01.T01:exon:1274;Parent=MsG0380011578.01.T01
Chr3 exon 1726051 1726181 1726051 ID=MsG0380011578.01.T01:exon:1273;Parent=MsG0380011578.01.T01
Chr3 exon 1726327 1726568 1726327 ID=MsG0380011578.01.T01:exon:1272;Parent=MsG0380011578.01.T01
Chr3 exon 1728413 1728539 1728413 ID=MsG0380011578.01.T01:exon:1271;Parent=MsG0380011578.01.T01
Chr3 five_prime_UTR 1728413 1728539 1728413 ID=MsG0380011578.01.T01:five_prime_utr;Parent=MsG0380011578.01.T01
Chr3 five_prime_UTR 1726499 1726568 1726499 ID=MsG0380011578.01.T01:five_prime_utr;Parent=MsG0380011578.01.T01
Chr3 CDS 1726327 1726498 1726327 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 CDS 1726051 1726181 1726051 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 CDS 1724518 1724617 1724518 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 CDS 1723297 1723803 1723297 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 CDS 1722820 1723157 1722820 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 CDS 1722287 1722448 1722287 ID=MsG0380011578.01.T01:cds;Parent=MsG0380011578.01.T01
Chr3 three_prime_UTR 1721991 1722286 1721991 ID=MsG0380011578.01.T01:three_prime_utr;Parent=MsG0380011578.01.T01
Gene Sequence

>MsG0380011578.01.T01

ATGCCAGCAGTTAAAATGGTGGCCAAATCTCCTACAACTTGCAAAAAAGATGGGAGGTATCCTCATGTGTCTCAGAAGTCAAATAAAATATCTAAAAGACTATGTTCGATGGTTGGAGTAACCGATGCAATGGAAGATTTAGATATATCATGCCAAACATATCTTAATGGTGGTTTTTCTGTAAATAAAGAATATTCAAAGGAGTGTGACAATGATGAACACCAAATGTCATGTGATGAAGAAACAATTGTGGGGAAGAACAGTCTCCCATTCAATGGTTGTGCAGATTCGATAGTAGAAACGGATTCTTTTCCGGTTTCTGTTTCTGCAATGTCCGATTCAGATACATTGTTGTCTTATTTTAACAGGCCTGATGATGCCCATCGTAACTTATTTGAAACAGTTAATAAGGAACAAATGACTAACCCACCTGATCGAGCGGATGACAGTAACTTTCCGAATTTCGAAATACCTGATATGTTAGACTACTATGTGGATGAAGCATTCTTCGGGTTTTCTAGTGATGGGATCAATCCATTTGATGATGGTCTCGACTATAGTACCTTTTCTGATCTTGAATTTGCTGGACCAAATTTGTTATACGATCTTCCTAGTACCCTTGACGAAAGCATAGAAGCAGCAAGCTACCAATATGTAGGATCCTGTGAAGAGTTTCAGGAGCCAATGCCTGATTCTTCATGGTTCAATGTCATTTGCCATCAGGCCAAGCCACTTACTGAAGAACATGATGCCAGGTCATGTCAGCTTGATTCTGAAAGAGTAGATTATACTGATCCAGAGATATTCATAAGCTTCTTGGAGGTATCAGATGAATCCAACTCATTGCCAGCTCTAGTAAGCAAGGAGACAAGTAAAAGGAAGCATGTTACCCTTGTTCTTGATTTGGATGAAACACTGATCCACTCTACAATGGCGAAATATGATAGTCGTGCTGACTTCACAATTCCAGTTTTACTTGACAAGGAGTACACTGTCTATGTGCGAAAAAGGCCCTTCCTCCACGAGTTTTTGGAGAGAGTATCGAAGATGTTTGAGATCGTCATTTTTACAGCAAGTAAAAAGATTTATGCGGAAAAGTTGCTAGATGTTCTTGATCCTGACAGAAAACTTTTTTCTCGAAGATTATACCGGGATTCGTGCATCTATCAAGATGGCACTTTCACCAAAGATTTGACAGTTCTTGGACTTGACCTAGCAAAAGTAGCCATAGTAGACAACTCTCCTCAGGTGTTCAGACTGCAAGTTAACAATGGGATTCCTATTGAGAGTTGGTTTGATGATCCATCTGATTCTGCTTTGATTTCTTTACTTCCCTTTTTGGAGAAACTCGTTGATGTGGACGATGTTCGACCGATTATCGCAGAGAAATTTGAGAACAAGAAGAATTAG
Protein sequence

>MsG0380011578.01.T01

MPAVKMVAKSPTTCKKDGRYPHVSQKSNKISKRLCSMVGVTDAMEDLDISCQTYLNGGFSVNKEYSKECDNDEHQMSCDEETIVGKNSLPFNGCADSIVETDSFPVSVSAMSDSDTLLSYFNRPDDAHRNLFETVNKEQMTNPPDRADDSNFPNFEIPDMLDYYVDEAFFGFSSDGINPFDDGLDYSTFSDLEFAGPNLLYDLPSTLDESIEAASYQYVGSCEEFQEPMPDSSWFNVICHQAKPLTEEHDARSCQLDSERVDYTDPEIFISFLEVSDESNSLPALVSKETSKRKHVTLVLDLDETLIHSTMAKYDSRADFTIPVLLDKEYTVYVRKRPFLHEFLERVSKMFEIVIFTASKKIYAEKLLDVLDPDRKLFSRRLYRDSCIYQDGTFTKDLTVLGLDLAKVAIVDNSPQVFRLQVNNGIPIESWFDDPSDSALISLLPFLEKLVDVDDVRPIIAEKFENKKN*