AlfalfaGEDB | MsG0880044622.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044622.01

KEGG: -
GO: -
PFAM: PF01453

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044622.01.T01	XP_039685012.1	63.452	197	68	4	28	220	1	197	9.18E-71	233

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044622.01.T01	Q9SY89	35	200	118	7	28	221	1	194	4.25E-26	109

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0880044618.01	MsG0880044622.01	0.844371	7.878762e-59	1.269221e-55
MsG0880044622.01	MsG0880044623.01	0.835052	2.099540e-56	2.537760e-53
MsG0880044622.01	MsG0880044626.01	0.817080	3.968717e-52	2.862065e-49
MsG0880044622.01	MsG0880044629.01	0.823516	1.328115e-53	1.146066e-50

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044622.01.T01	MTR_8g465150	64.824	199	64	3	28	220	1	199	9.30e-74	239
MsG0880044622.01.T01	MTR_8g465160	63.452	197	68	4	28	220	1	197	1.33e-71	234
MsG0880044622.01.T01	MTR_6g012810	38.095	189	107	4	40	218	105	293	4.92e-27	109
MsG0880044622.01.T01	MTR_6g012810	38.095	189	107	4	40	218	105	293	6.44e-27	108
MsG0880044622.01.T01	MTR_3g020230	35.533	197	121	5	28	221	1	194	1.06e-26	108
MsG0880044622.01.T01	MTR_2g089360	40.000	190	101	6	38	221	13	195	2.85e-26	107
MsG0880044622.01.T01	MTR_8g465410	40.102	197	102	7	28	218	1	187	4.20e-26	106
MsG0880044622.01.T01	MTR_8g465580	44.242	165	82	6	60	218	27	187	5.52e-26	106
MsG0880044622.01.T01	MTR_2g011160	39.791	191	100	7	40	221	9	193	6.57e-26	105
MsG0880044622.01.T01	MTR_2g011160	39.791	191	100	7	40	221	9	193	6.78e-26	105

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044622.01.T01	AT1G61610	35.000	200	118	7	28	221	1	194	4.33e-27	109
MsG0880044622.01.T01	AT1G61610	35.000	200	118	7	28	221	1	194	4.84e-27	109
MsG0880044622.01.T01	AT4G21380	39.873	158	87	4	70	221	44	199	2.19e-25	104
MsG0880044622.01.T01	AT4G21380	39.623	159	88	4	69	221	43	199	2.60e-25	104
MsG0880044622.01.T01	AT4G03230	35.500	200	105	8	38	221	1	192	1.24e-23	99.8
MsG0880044622.01.T01	AT4G03230	35.500	200	105	8	38	221	1	192	1.24e-23	99.8
MsG0880044622.01.T01	AT4G03230	35.678	199	106	8	38	221	1	192	1.28e-23	99.4
MsG0880044622.01.T01	AT1G11280	39.103	156	91	3	68	221	38	191	1.37e-23	99.4
MsG0880044622.01.T01	AT1G11280	39.103	156	91	3	68	221	48	201	1.46e-23	99.4
MsG0880044622.01.T01	AT1G11280	39.103	156	91	3	68	221	38	191	1.47e-23	99.4

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Find 48 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAGACATACCAAGT+CGG	0.657000	8:-45862718	None:intergenic
AAACTTGGTCAATGAGATCA+TGG	0.500440	8:+45863289	MsG0880044622.01.T01:CDS
AAAGTATATGGTCCTGCAGC+AGG	0.441709	8:-45863327	None:intergenic
AAAGTGCGAACCATCTATCA+TGG	0.567113	8:+45862756	MsG0880044622.01.T01:CDS
AAATATTGACAATATTAGCA+AGG	0.625803	8:-45862800	None:intergenic
AACGCTGAGGATGTAACAAA+TGG	0.445733	8:-45863039	None:intergenic
AACTCGACCCTGTACTACCT+AGG	0.665807	8:+45862961	MsG0880044622.01.T01:CDS
AACTCTGCCATAAAATTGCT+TGG	0.447550	8:-45863203	None:intergenic
AAGTATATGGTCCTGCAGCA+GGG	0.625585	8:-45863326	None:intergenic
ACAAAGTGGAAGATATCAAT+TGG	0.426024	8:-45863350	None:intergenic

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATAGACATACCAAGT+CGG	-	Chr8:45862721-45862740	None:intergenic	30.0%
ACAAAGTGGAAGATATCAAT+TGG	-	Chr8:45863353-45863372	None:intergenic	30.0%
ACCCAAACTATCTTATCATT+TGG	-	Chr8:45863006-45863025	None:intergenic	30.0%
CATTTACGCAAAACATATTG+GGG	-	Chr8:45862831-45862850	None:intergenic	30.0%
GCATTTACGCAAAACATATT+GGG	-	Chr8:45862832-45862851	None:intergenic	30.0%
TGCATTTACGCAAAACATAT+TGG	-	Chr8:45862833-45862852	None:intergenic	30.0%
TTATTGACACAGGAAAAACT+TGG	+	Chr8:45863274-45863293	MsG0880044622.01.T01:CDS	30.0%
AAACTTGGTCAATGAGATCA+TGG	+	Chr8:45863289-45863308	MsG0880044622.01.T01:CDS	35.0%
AACTCTGCCATAAAATTGCT+TGG	-	Chr8:45863206-45863225	None:intergenic	35.0%
ATTGGAAACGTTATTGACAC+AGG	+	Chr8:45863264-45863283	MsG0880044622.01.T01:CDS	35.0%

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	45862694	45863410	45862694	ID=MsG0880044622.01;Name=MsG0880044622.01
Chr8	mRNA	45862694	45863410	45862694	ID=MsG0880044622.01.T01;Parent=MsG0880044622.01;Name=MsG0880044622.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|238
Chr8	exon	45862694	45863410	45862694	ID=MsG0880044622.01.T01:exon:18519;Parent=MsG0880044622.01.T01
Chr8	CDS	45862694	45863410	45862694	ID=MsG0880044622.01.T01:cds;Parent=MsG0880044622.01.T01

Gene Sequence

>MsG0880044622.01.T01

ATGGGCGGTCGAAATCCCTTTGTGCCGACTTGGTATGTCTATAGTTTTGAATTAAGCATTGCAAAGTGCGAACCATCTATCATGGCACAGGCTTCTAAAACTGTTTCCTTGCTAATATTGTCAATATTTTATTGCCCCAATATGTTTTGCGTAAATGCAACATCCTACAAAAAATTCCTATTAATGGGGCAATCAGTAAGAATTTCAGACACACTTGTTTCATATGGTGGAAACTACGAACTAGGATTTTTCACTACAAAGATGGAGAACTCGACCCTGTACTACCTAGGTATAAGGTCTAAAAAGGTACCAAATGATAAGATAGTTTGGGTTGAAAGACACCTCCCATTTGTTACATCCTCAGCGTTGCTAACCATTCACAATGGTAACATTCGCCTCATAGATGGAGATAATACGCACAACGTGACAAGTAATCAGAACAGCAATAGTATTAGTATCTACGCAACTCTCTTTGACACAGGAAACTTGGTACTGTTGAATAACTCTAACCAAGCAATTTTATGGCAGAGTTTTGATGACCCCACGGATACGCTTTTGCCTGGAATGAAAATTGGAAACGTTATTGACACAGGAAAAACTTGGTCAATGAGATCATGGAGGAGTGAAGATGACCCTGCTGCAGGACCATATACTTTCCAATTGATATCTTCCACTTTGTTGAGATCAAGTATGAGGTCATTGAGTCTATCAAGTTAA

Protein sequence

>MsG0880044622.01.T01

MGGRNPFVPTWYVYSFELSIAKCEPSIMAQASKTVSLLILSIFYCPNMFCVNATSYKKFLLMGQSVRISDTLVSYGGNYELGFFTTKMENSTLYYLGIRSKKVPNDKIVWVERHLPFVTSSALLTIHNGNIRLIDGDNTHNVTSNQNSNSISIYATLFDTGNLVLLNNSNQAILWQSFDDPTDTLLPGMKIGNVIDTGKTWSMRSWRSEDDPAAGPYTFQLISSTLLRSSMRSLSLSS*