Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044972.01.T01 | XP_003628627.3 | 95.879 | 364 | 14 | 1 | 1 | 364 | 1 | 363 | 0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044972.01.T01 | O04529 | 55.899 | 356 | 139 | 8 | 14 | 361 | 9 | 354 | 3.28E-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044972.01.T01 | G7LEQ8 | 95.879 | 364 | 14 | 1 | 1 | 364 | 1 | 363 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0480022309.01 | MsG0880044972.01 | 0.841689 | 4.080901e-58 | 6.042785e-55 |
| MsG0480023349.01 | MsG0880044972.01 | 0.803146 | 4.007438e-49 | 1.998703e-46 |
| MsG0580030181.01 | MsG0880044972.01 | 0.818925 | 1.519741e-52 | 1.153118e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044972.01.T01 | MTR_8g062770 | 95.879 | 364 | 14 | 1 | 1 | 364 | 1 | 363 | 0.0 | 701 |
| MsG0880044972.01.T01 | MTR_5g036410 | 64.095 | 337 | 111 | 3 | 15 | 348 | 19 | 348 | 5.61e-160 | 453 |
| MsG0880044972.01.T01 | MTR_5g012680 | 47.059 | 323 | 144 | 5 | 23 | 339 | 25 | 326 | 8.62e-96 | 290 |
| MsG0880044972.01.T01 | MTR_8g005900 | 45.902 | 305 | 143 | 7 | 48 | 345 | 39 | 328 | 8.61e-83 | 256 |
| MsG0880044972.01.T01 | MTR_5g036080 | 38.838 | 327 | 161 | 10 | 11 | 328 | 25 | 321 | 1.41e-60 | 198 |
| MsG0880044972.01.T01 | MTR_6g008480 | 34.853 | 307 | 157 | 7 | 45 | 325 | 40 | 329 | 5.13e-53 | 179 |
| MsG0880044972.01.T01 | MTR_5g036083 | 37.107 | 318 | 145 | 8 | 10 | 325 | 9 | 273 | 3.33e-50 | 171 |
| MsG0880044972.01.T01 | MTR_5g036087 | 35.503 | 338 | 162 | 9 | 10 | 325 | 9 | 312 | 2.25e-48 | 167 |
| MsG0880044972.01.T01 | MTR_5g036093 | 35.862 | 290 | 140 | 9 | 62 | 335 | 35 | 294 | 2.57e-43 | 152 |
| MsG0880044972.01.T01 | MTR_5g036290 | 37.113 | 291 | 140 | 11 | 58 | 339 | 87 | 343 | 2.33e-42 | 151 |
| MsG0880044972.01.T01 | MTR_5g036270 | 35.099 | 302 | 160 | 9 | 59 | 325 | 4 | 304 | 4.21e-39 | 142 |
| MsG0880044972.01.T01 | MTR_5g036360 | 34.694 | 294 | 149 | 11 | 54 | 339 | 75 | 333 | 3.28e-38 | 140 |
| MsG0880044972.01.T01 | MTR_5g036310 | 34.513 | 113 | 65 | 3 | 53 | 158 | 66 | 176 | 4.14e-13 | 69.7 |
| MsG0880044972.01.T01 | MTR_5g036310 | 36.364 | 132 | 81 | 3 | 209 | 337 | 157 | 288 | 5.33e-12 | 66.2 |
| MsG0880044972.01.T01 | MTR_2g079050 | 47.222 | 72 | 29 | 2 | 60 | 127 | 5 | 71 | 3.18e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044972.01.T01 | AT1G70170 | 55.899 | 356 | 139 | 8 | 14 | 361 | 9 | 354 | 3.35e-133 | 385 |
| MsG0880044972.01.T01 | AT1G24140 | 58.333 | 312 | 125 | 3 | 42 | 348 | 42 | 353 | 5.95e-129 | 375 |
| MsG0880044972.01.T01 | AT1G59970 | 55.108 | 323 | 117 | 7 | 16 | 325 | 6 | 313 | 3.20e-114 | 337 |
| MsG0880044972.01.T01 | AT4G16640 | 47.756 | 312 | 138 | 7 | 43 | 350 | 52 | 342 | 2.08e-86 | 266 |
| MsG0880044972.01.T01 | AT2G45040 | 49.296 | 284 | 115 | 6 | 61 | 339 | 50 | 309 | 1.43e-82 | 255 |
Find 132 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCCTTGCCGGCGTTCA+TGG | 0.279300 | 8:+52283961 | None:intergenic |
| AGGGGAATTCAATATTTATA+TGG | 0.304659 | 8:-52283404 | MsG0880044972.01.T01:CDS |
| CATGAGATTGGGCACTTGTT+AGG | 0.311964 | 8:-52283515 | MsG0880044972.01.T01:CDS |
| CGTTGTTTCTGTGTCCTTGC+CGG | 0.339334 | 8:+52283952 | None:intergenic |
| ACCTTGACGCTGCAGAGGAC+TGG | 0.343059 | 8:-52283604 | MsG0880044972.01.T01:CDS |
| CATTGAGATTGAAATTCTTC+TGG | 0.355467 | 8:+52284068 | None:intergenic |
| GCAGAGGACTGGGTAGTTTC+CGG | 0.362710 | 8:-52283593 | MsG0880044972.01.T01:CDS |
| TCAGGCGCTGATATTAAGAT+TGG | 0.370272 | 8:-52283719 | MsG0880044972.01.T01:CDS |
| GGTTTCTGTAAGTTCGTTAC+CGG | 0.371937 | 8:+52283820 | None:intergenic |
| AGGCATCCCACGGGCCAACC+TGG | 0.376282 | 8:+52284245 | None:intergenic |
| ATTGGGCACTTGTTAGGATT+AGG | 0.381177 | 8:-52283509 | MsG0880044972.01.T01:CDS |
| CGGGCCAACCTGGGGAGTGC+CGG | 0.384136 | 8:+52284255 | None:intergenic |
| CTCCGGCCACCGTGGTTGAC+CGG | 0.386887 | 8:+52283874 | None:intergenic |
| TCACATTTCACCGTCTTTCC+CGG | 0.394178 | 8:-52283893 | MsG0880044972.01.T01:CDS |
| ACAGCCTCACTTCTTCTTTG+TGG | 0.398951 | 8:-52283313 | MsG0880044972.01.T01:CDS |
| GGGCCAACCTGGGGAGTGCC+GGG | 0.409939 | 8:+52284256 | None:intergenic |
| TATTTCCCGACGTCCCCTCT+TGG | 0.410326 | 8:-52284285 | MsG0880044972.01.T01:CDS |
| TCAGTGGCGGTGCATGAGAT+TGG | 0.416703 | 8:-52283527 | MsG0880044972.01.T01:CDS |
| GAGGCTGTAACCACCATTGC+CGG | 0.437269 | 8:+52283328 | None:intergenic |
| GGCATCCCACGGGCCAACCT+GGG | 0.440682 | 8:+52284246 | None:intergenic |
| CACTCCCCAGGTTGGCCCGT+GGG | 0.442112 | 8:-52284251 | MsG0880044972.01.T01:CDS |
| GCCTGAATATAACGTTGTTT+CGG | 0.442318 | 8:+52283736 | None:intergenic |
| TCATCGGAGAAATTTGATTC+CGG | 0.445302 | 8:+52284127 | None:intergenic |
| GGTATCCAAGAGGGGACGTC+GGG | 0.448914 | 8:+52284280 | None:intergenic |
| TCCCGGTCAACCACGGTGGC+CGG | 0.450744 | 8:-52283876 | MsG0880044972.01.T01:CDS |
| ATGCTTTCTCTCCAAGGAAC+GGG | 0.452189 | 8:-52283634 | MsG0880044972.01.T01:CDS |
| AATTTCAATCTCAATGTAAC+CGG | 0.458242 | 8:-52284061 | MsG0880044972.01.T01:CDS |
| CAGTGGCGGTGCATGAGATT+GGG | 0.468700 | 8:-52283526 | MsG0880044972.01.T01:CDS |
| GAAATTTGATTCCGGCGAGC+GGG | 0.474085 | 8:+52284135 | None:intergenic |
| ACGGTGGCCGGAGGGAAAGC+AGG | 0.474686 | 8:-52283864 | MsG0880044972.01.T01:CDS |
| AGGTGAAACCTCCCGTTCCT+TGG | 0.476396 | 8:+52283623 | None:intergenic |
| GAGCCGTTTGACGGAAGCTT+AGG | 0.479919 | 8:-52283668 | MsG0880044972.01.T01:CDS |
| ACCGAAACAACGTTATATTC+AGG | 0.482978 | 8:-52283737 | MsG0880044972.01.T01:CDS |
| AGAAATTTGATTCCGGCGAG+CGG | 0.487702 | 8:+52284134 | None:intergenic |
| ATGGTGGAGCCATTGAAACT+AGG | 0.491172 | 8:+52283374 | None:intergenic |
| TCCGGCCACCGTGGTTGACC+GGG | 0.503089 | 8:+52283875 | None:intergenic |
| GGTACTAACCCTAGTTTCAA+TGG | 0.504380 | 8:-52283383 | MsG0880044972.01.T01:CDS |
| AGAGAGAATGAAACTGTGAA+AGG | 0.505290 | 8:+52284334 | None:intergenic |
| TGCTGGCTGAAGATGATGTA+AGG | 0.505840 | 8:-52283424 | MsG0880044972.01.T01:CDS |
| GGAGACGGCGAGCCGTTTGA+CGG | 0.506173 | 8:-52283677 | MsG0880044972.01.T01:CDS |
| CAAACGGCTCGCCGTCTCCA+TGG | 0.511534 | 8:+52283681 | None:intergenic |
| GATACCTCCCGGCACTCCCC+AGG | 0.513483 | 8:-52284263 | MsG0880044972.01.T01:CDS |
| CCTTGACGCTGCAGAGGACT+GGG | 0.516508 | 8:-52283603 | MsG0880044972.01.T01:CDS |
| GGCGTAGCGGATATCATTAA+CGG | 0.519895 | 8:-52283992 | MsG0880044972.01.T01:CDS |
| CGGTGAAATGTGATACTGTA+TGG | 0.520328 | 8:+52283903 | None:intergenic |
| GAGATCATCGTCGAAGTCAT+CGG | 0.523046 | 8:+52284111 | None:intergenic |
| CTCCACCATCACGTCGTCAC+CGG | 0.525098 | 8:-52283360 | MsG0880044972.01.T01:CDS |
| ATTAAGATTGGATTCTTCAA+CGG | 0.529726 | 8:-52283707 | MsG0880044972.01.T01:CDS |
| TGGTGGAGCCATTGAAACTA+GGG | 0.533361 | 8:+52283375 | None:intergenic |
| CCATTGCCGGTATTCCTCTC+CGG | 0.533686 | 8:+52283341 | None:intergenic |
| CGGTTACATTCCCCGCTCGC+CGG | 0.541508 | 8:-52284146 | MsG0880044972.01.T01:CDS |
| ATTAGGTCACTCGTCGGTGG+AGG | 0.542053 | 8:-52283492 | MsG0880044972.01.T01:CDS |
| GGATTCTTCAACGGCGACCA+TGG | 0.542740 | 8:-52283698 | MsG0880044972.01.T01:CDS |
| GTTTCTGTAAGTTCGTTACC+GGG | 0.542882 | 8:+52283821 | None:intergenic |
| GAGATTGAAATTCTTCTGGT+AGG | 0.547482 | 8:+52284072 | None:intergenic |
| TGGCGCATGCTTTCTCTCCA+AGG | 0.548235 | 8:-52283640 | MsG0880044972.01.T01:CDS |
| TCGTCACCGGAGAGGAATAC+CGG | 0.550247 | 8:-52283347 | MsG0880044972.01.T01:CDS |
| GTTCCTAAGCTTCCGTCAAA+CGG | 0.550741 | 8:+52283665 | None:intergenic |
| CGGTCAACCACGGTGGCCGG+AGG | 0.551139 | 8:-52283873 | MsG0880044972.01.T01:CDS |
| GTTAGCTCCTGCTTTCCCTC+CGG | 0.552722 | 8:+52283857 | None:intergenic |
| CTTCTTCTTTGTGGTCCCCG+TGG | 0.553868 | 8:-52283304 | MsG0880044972.01.T01:CDS |
| AGTAGTTCTTTAAATTAGAG+AGG | 0.554718 | 8:+52284179 | None:intergenic |
| GAGAGAATGAAACTGTGAAA+GGG | 0.557012 | 8:+52284335 | None:intergenic |
| GCACTCCCCAGGTTGGCCCG+TGG | 0.558444 | 8:-52284252 | MsG0880044972.01.T01:CDS |
| TGCGGTTGATTTAGAATCAG+TGG | 0.558602 | 8:-52283543 | MsG0880044972.01.T01:CDS |
| TGCTTTCCCTCCGGCCACCG+TGG | 0.558673 | 8:+52283866 | None:intergenic |
| CTAACCTACGCGTTCTTCCC+CGG | 0.559552 | 8:-52283839 | MsG0880044972.01.T01:CDS |
| AACAGCGTTTGCACGGTGGT+CGG | 0.559595 | 8:-52283780 | MsG0880044972.01.T01:CDS |
| AATTTCACCAGCTGCCGTCA+AGG | 0.560250 | 8:-52284217 | MsG0880044972.01.T01:CDS |
| AAGAACTACTTCCAACACTT+CGG | 0.561625 | 8:-52284166 | MsG0880044972.01.T01:CDS |
| ACGGATGAAGAAAGTAGTGC+TGG | 0.562431 | 8:-52283441 | MsG0880044972.01.T01:CDS |
| CTCCGGTGACGACGTGATGG+TGG | 0.568349 | 8:+52283358 | None:intergenic |
| AGAATGAAACTGTGAAAGGG+AGG | 0.568946 | 8:+52284338 | None:intergenic |
| TCTTCGCAACAGCGTTTGCA+CGG | 0.569638 | 8:-52283787 | MsG0880044972.01.T01:CDS |
| CCCAGTCCTCTGCAGCGTCA+AGG | 0.569873 | 8:+52283603 | None:intergenic |
| ACAGAGAGAAAAGTCTCCAC+GGG | 0.573523 | 8:+52283288 | None:intergenic |
| GATTCTAAATCAACCGCAGT+TGG | 0.576335 | 8:+52283548 | None:intergenic |
| CCTCCCGGCACTCCCCAGGT+TGG | 0.577503 | 8:-52284259 | MsG0880044972.01.T01:CDS |
| CCGTGGTTGACCGGGAAAGA+CGG | 0.577520 | 8:+52283883 | None:intergenic |
| AAATTTGATTCCGGCGAGCG+GGG | 0.579169 | 8:+52284136 | None:intergenic |
| CATGCTTTCTCTCCAAGGAA+CGG | 0.580918 | 8:-52283635 | MsG0880044972.01.T01:CDS |
| CACAGAGAGAAAAGTCTCCA+CGG | 0.582223 | 8:+52283287 | None:intergenic |
| AACGTGGTAGCATGACCTGC+CGG | 0.584798 | 8:+52284017 | None:intergenic |
| CCGTCTTTCCCGGTCAACCA+CGG | 0.585402 | 8:-52283883 | MsG0880044972.01.T01:CDS |
| GTTTCACCTTGACGCTGCAG+AGG | 0.589826 | 8:-52283609 | MsG0880044972.01.T01:CDS |
| AGTCATGTCGTCGAGCTCAC+CGG | 0.590938 | 8:+52284042 | None:intergenic |
| CTTTCTCTCCAAGGAACGGG+AGG | 0.593143 | 8:-52283631 | MsG0880044972.01.T01:CDS |
| GTGCCGGGAGGTATCCAAGA+GGG | 0.593782 | 8:+52284271 | None:intergenic |
| GCATCCCACGGGCCAACCTG+GGG | 0.594246 | 8:+52284247 | None:intergenic |
| AAATTGCGAAAGGCATCCCA+CGG | 0.595285 | 8:+52284235 | None:intergenic |
| CGACGACTTCGACACATCGC+CGG | 0.595454 | 8:+52283574 | None:intergenic |
| CCTCTCCGGTGACGACGTGA+TGG | 0.596587 | 8:+52283355 | None:intergenic |
| CCGGAGAGGAATACCGGCAA+TGG | 0.596610 | 8:-52283341 | MsG0880044972.01.T01:CDS |
| TGCCGGGAGGTATCCAAGAG+GGG | 0.597745 | 8:+52284272 | None:intergenic |
| TGACGGAAGCTTAGGAACGC+TGG | 0.602552 | 8:-52283660 | MsG0880044972.01.T01:CDS |
| GGGGAATGTAACCGAAGTGT+TGG | 0.602813 | 8:+52284155 | None:intergenic |
| GAGAGGAATACCGGCAATGG+TGG | 0.603466 | 8:-52283338 | MsG0880044972.01.T01:CDS |
| AGCGTTTGCACGGTGGTCGG+AGG | 0.605846 | 8:-52283777 | MsG0880044972.01.T01:CDS |
| AGGTATCCAAGAGGGGACGT+CGG | 0.606793 | 8:+52284279 | None:intergenic |
| AGCTCGACGACATGACTCTC+CGG | 0.609131 | 8:-52284036 | MsG0880044972.01.T01:CDS |
| CGACGACATGACTCTCCGGC+AGG | 0.614104 | 8:-52284032 | MsG0880044972.01.T01:CDS |
| TTCAACGGCGACCATGGAGA+CGG | 0.618539 | 8:-52283692 | MsG0880044972.01.T01:CDS |
| GGTCAACCACGGTGGCCGGA+GGG | 0.618646 | 8:-52283872 | MsG0880044972.01.T01:CDS |
| AACTACCATGAACGCCGGCA+AGG | 0.625626 | 8:-52283966 | MsG0880044972.01.T01:CDS |
| GTCCCCTCTTGGATACCTCC+CGG | 0.630970 | 8:-52284274 | MsG0880044972.01.T01:CDS |
| AGGATTAGGTCACTCGTCGG+TGG | 0.634188 | 8:-52283495 | MsG0880044972.01.T01:CDS |
| CCAACCTGGGGAGTGCCGGG+AGG | 0.634904 | 8:+52284259 | None:intergenic |
| TTCATCCGTGACGATATCGT+CGG | 0.640422 | 8:+52283455 | None:intergenic |
| AGTGCCGGGAGGTATCCAAG+AGG | 0.644275 | 8:+52284270 | None:intergenic |
| GCAGCTGGTGAAATTGCGAA+AGG | 0.649926 | 8:+52284225 | None:intergenic |
| GCTGGCTGAAGATGATGTAA+GGG | 0.654357 | 8:-52283423 | MsG0880044972.01.T01:CDS |
| GTTAGGATTAGGTCACTCGT+CGG | 0.655695 | 8:-52283498 | MsG0880044972.01.T01:CDS |
| AATTGCGAAAGGCATCCCAC+GGG | 0.659471 | 8:+52284236 | None:intergenic |
| GCTACCACGTTGCGGCGTAG+CGG | 0.663069 | 8:-52284005 | MsG0880044972.01.T01:CDS |
| GGTTGATTTAGAATCAGTGG+CGG | 0.677023 | 8:-52283540 | MsG0880044972.01.T01:CDS |
| CCATCACGTCGTCACCGGAG+AGG | 0.679279 | 8:-52283355 | MsG0880044972.01.T01:CDS |
| GGGACCACAAAGAAGAAGTG+AGG | 0.687301 | 8:+52283309 | None:intergenic |
| CAGGTCATGCTACCACGTTG+CGG | 0.692886 | 8:-52284013 | MsG0880044972.01.T01:CDS |
| TGTTTCCGACGATATCGTCA+CGG | 0.697523 | 8:-52283460 | MsG0880044972.01.T01:CDS |
| CAAACAGTGACAGCAAGCTG+CGG | 0.704212 | 8:-52283928 | MsG0880044972.01.T01:CDS |
| TCGCAACAGCGTTTGCACGG+TGG | 0.704349 | 8:-52283784 | MsG0880044972.01.T01:CDS |
| ATAGACGAGCTGAAACAATG+AGG | 0.706815 | 8:+52284305 | None:intergenic |
| CTGGCTGAAGATGATGTAAG+GGG | 0.707956 | 8:-52283422 | MsG0880044972.01.T01:CDS |
| GAAGTCGTCGTTACCAACTG+CGG | 0.713163 | 8:-52283561 | MsG0880044972.01.T01:CDS |
| GTTACCGGGGAAGAACGCGT+AGG | 0.717411 | 8:+52283835 | None:intergenic |
| ATATCCGCTACGCCGCAACG+TGG | 0.719735 | 8:+52284001 | None:intergenic |
| TTTCTGTAAGTTCGTTACCG+GGG | 0.719761 | 8:+52283822 | None:intergenic |
| GGTACAACTACCATGAACGC+CGG | 0.720442 | 8:-52283971 | MsG0880044972.01.T01:CDS |
| TGTTTCGGTGAATTTCAGCG+TGG | 0.748374 | 8:+52283751 | None:intergenic |
| TCTTTCCCGGTCAACCACGG+TGG | 0.752286 | 8:-52283880 | MsG0880044972.01.T01:CDS |
| CAGAGAGAAAAGTCTCCACG+GGG | 0.762140 | 8:+52283289 | None:intergenic |
| CGTCAAGGCGAAAACTACAA+CGG | 0.775529 | 8:-52284202 | MsG0880044972.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTTCAATCTCAATGTAAC+CGG | - | Chr8:52283583-52283602 | MsG0880044972.01.T01:CDS | 25.0% |
| ! | AGGGGAATTCAATATTTATA+TGG | - | Chr8:52284240-52284259 | MsG0880044972.01.T01:CDS | 25.0% |
| ! | AGTAGTTCTTTAAATTAGAG+AGG | + | Chr8:52283468-52283487 | None:intergenic | 25.0% |
| ! | ATTAAGATTGGATTCTTCAA+CGG | - | Chr8:52283937-52283956 | MsG0880044972.01.T01:CDS | 25.0% |
| CATTGAGATTGAAATTCTTC+TGG | + | Chr8:52283579-52283598 | None:intergenic | 30.0% | |
| AAGAACTACTTCCAACACTT+CGG | - | Chr8:52283478-52283497 | MsG0880044972.01.T01:CDS | 35.0% | |
| ACCGAAACAACGTTATATTC+AGG | - | Chr8:52283907-52283926 | MsG0880044972.01.T01:CDS | 35.0% | |
| AGAGAGAATGAAACTGTGAA+AGG | + | Chr8:52283313-52283332 | None:intergenic | 35.0% | |
| GAGAGAATGAAACTGTGAAA+GGG | + | Chr8:52283312-52283331 | None:intergenic | 35.0% | |
| GAGATTGAAATTCTTCTGGT+AGG | + | Chr8:52283575-52283594 | None:intergenic | 35.0% | |
| GCCTGAATATAACGTTGTTT+CGG | + | Chr8:52283911-52283930 | None:intergenic | 35.0% | |
| TCATCGGAGAAATTTGATTC+CGG | + | Chr8:52283520-52283539 | None:intergenic | 35.0% | |
| !!! | GGTAGGTTTTAATTGCTTCA+TGG | + | Chr8:52283558-52283577 | None:intergenic | 35.0% |
| AGAATGAAACTGTGAAAGGG+AGG | + | Chr8:52283309-52283328 | None:intergenic | 40.0% | |
| ATAGACGAGCTGAAACAATG+AGG | + | Chr8:52283342-52283361 | None:intergenic | 40.0% | |
| CGGTGAAATGTGATACTGTA+TGG | + | Chr8:52283744-52283763 | None:intergenic | 40.0% | |
| GATTCTAAATCAACCGCAGT+TGG | + | Chr8:52284099-52284118 | None:intergenic | 40.0% | |
| GGTACTAACCCTAGTTTCAA+TGG | - | Chr8:52284261-52284280 | MsG0880044972.01.T01:CDS | 40.0% | |
| GGTTTCTGTAAGTTCGTTAC+CGG | + | Chr8:52283827-52283846 | None:intergenic | 40.0% | |
| GTTTCTGTAAGTTCGTTACC+GGG | + | Chr8:52283826-52283845 | None:intergenic | 40.0% | |
| TTTCTGTAAGTTCGTTACCG+GGG | + | Chr8:52283825-52283844 | None:intergenic | 40.0% | |
| ! | ATTGGGCACTTGTTAGGATT+AGG | - | Chr8:52284135-52284154 | MsG0880044972.01.T01:CDS | 40.0% |
| ! | GGTTGATTTAGAATCAGTGG+CGG | - | Chr8:52284104-52284123 | MsG0880044972.01.T01:CDS | 40.0% |
| ! | TGCGGTTGATTTAGAATCAG+TGG | - | Chr8:52284101-52284120 | MsG0880044972.01.T01:CDS | 40.0% |
| !! | TCAGGCGCTGATATTAAGAT+TGG | - | Chr8:52283925-52283944 | MsG0880044972.01.T01:CDS | 40.0% |
| ACAGAGAGAAAAGTCTCCAC+GGG | + | Chr8:52284359-52284378 | None:intergenic | 45.0% | |
| ACAGCCTCACTTCTTCTTTG+TGG | - | Chr8:52284331-52284350 | MsG0880044972.01.T01:CDS | 45.0% | |
| ACGGATGAAGAAAGTAGTGC+TGG | - | Chr8:52284203-52284222 | MsG0880044972.01.T01:CDS | 45.0% | |
| AGAAATTTGATTCCGGCGAG+CGG | + | Chr8:52283513-52283532 | None:intergenic | 45.0% | |
| ATGCTTTCTCTCCAAGGAAC+GGG | - | Chr8:52284010-52284029 | MsG0880044972.01.T01:CDS | 45.0% | |
| CACAGAGAGAAAAGTCTCCA+CGG | + | Chr8:52284360-52284379 | None:intergenic | 45.0% | |
| CATGAGATTGGGCACTTGTT+AGG | - | Chr8:52284129-52284148 | MsG0880044972.01.T01:CDS | 45.0% | |
| CATGCTTTCTCTCCAAGGAA+CGG | - | Chr8:52284009-52284028 | MsG0880044972.01.T01:CDS | 45.0% | |
| CGTCAAGGCGAAAACTACAA+CGG | - | Chr8:52283442-52283461 | MsG0880044972.01.T01:CDS | 45.0% | |
| CTGGCTGAAGATGATGTAAG+GGG | - | Chr8:52284222-52284241 | MsG0880044972.01.T01:CDS | 45.0% | |
| GAGATCATCGTCGAAGTCAT+CGG | + | Chr8:52283536-52283555 | None:intergenic | 45.0% | |
| GCTGGCTGAAGATGATGTAA+GGG | - | Chr8:52284221-52284240 | MsG0880044972.01.T01:CDS | 45.0% | |
| GTTAGGATTAGGTCACTCGT+CGG | - | Chr8:52284146-52284165 | MsG0880044972.01.T01:CDS | 45.0% | |
| GTTCCTAAGCTTCCGTCAAA+CGG | + | Chr8:52283982-52284001 | None:intergenic | 45.0% | |
| TCACATTTCACCGTCTTTCC+CGG | - | Chr8:52283751-52283770 | MsG0880044972.01.T01:CDS | 45.0% | |
| TGGTGGAGCCATTGAAACTA+GGG | + | Chr8:52284272-52284291 | None:intergenic | 45.0% | |
| TGTTTCCGACGATATCGTCA+CGG | - | Chr8:52284184-52284203 | MsG0880044972.01.T01:CDS | 45.0% | |
| TGTTTCGGTGAATTTCAGCG+TGG | + | Chr8:52283896-52283915 | None:intergenic | 45.0% | |
| TTCATCCGTGACGATATCGT+CGG | + | Chr8:52284192-52284211 | None:intergenic | 45.0% | |
| ! | ATGGTGGAGCCATTGAAACT+AGG | + | Chr8:52284273-52284292 | None:intergenic | 45.0% |
| ! | CGTTGTAGTTTTCGCCTTGA+CGG | + | Chr8:52283444-52283463 | None:intergenic | 45.0% |
| ! | TGCTGGCTGAAGATGATGTA+AGG | - | Chr8:52284220-52284239 | MsG0880044972.01.T01:CDS | 45.0% |
| ! | TGTTGCGAAGACGCTTTTCA+CGG | + | Chr8:52283848-52283867 | None:intergenic | 45.0% |
| !! | AAATTGCGAAAGGCATCCCA+CGG | + | Chr8:52283412-52283431 | None:intergenic | 45.0% |
| !! | GGCGTAGCGGATATCATTAA+CGG | - | Chr8:52283652-52283671 | MsG0880044972.01.T01:CDS | 45.0% |
| AAATTTGATTCCGGCGAGCG+GGG | + | Chr8:52283511-52283530 | None:intergenic | 50.0% | |
| AATTTCACCAGCTGCCGTCA+AGG | - | Chr8:52283427-52283446 | MsG0880044972.01.T01:CDS | 50.0% | |
| CAAACAGTGACAGCAAGCTG+CGG | - | Chr8:52283716-52283735 | MsG0880044972.01.T01:CDS | 50.0% | |
| CAGAGAGAAAAGTCTCCACG+GGG | + | Chr8:52284358-52284377 | None:intergenic | 50.0% | |
| GAAATTTGATTCCGGCGAGC+GGG | + | Chr8:52283512-52283531 | None:intergenic | 50.0% | |
| GAAGTCGTCGTTACCAACTG+CGG | - | Chr8:52284083-52284102 | MsG0880044972.01.T01:CDS | 50.0% | |
| GCAGCTGGTGAAATTGCGAA+AGG | + | Chr8:52283422-52283441 | None:intergenic | 50.0% | |
| GGGACCACAAAGAAGAAGTG+AGG | + | Chr8:52284338-52284357 | None:intergenic | 50.0% | |
| GGGGAATGTAACCGAAGTGT+TGG | + | Chr8:52283492-52283511 | None:intergenic | 50.0% | |
| GGTACAACTACCATGAACGC+CGG | - | Chr8:52283673-52283692 | MsG0880044972.01.T01:CDS | 50.0% | |
| TCTTCGCAACAGCGTTTGCA+CGG | - | Chr8:52283857-52283876 | MsG0880044972.01.T01:CDS | 50.0% | |
| !! | AATTGCGAAAGGCATCCCAC+GGG | + | Chr8:52283411-52283430 | None:intergenic | 50.0% |
| !! | CGTTGTTTCTGTGTCCTTGC+CGG | + | Chr8:52283695-52283714 | None:intergenic | 50.0% |
| AACAGCGTTTGCACGGTGGT+CGG | - | Chr8:52283864-52283883 | MsG0880044972.01.T01:CDS | 55.0% | |
| AACGTGGTAGCATGACCTGC+CGG | + | Chr8:52283630-52283649 | None:intergenic | 55.0% | |
| AACTACCATGAACGCCGGCA+AGG | - | Chr8:52283678-52283697 | MsG0880044972.01.T01:CDS | 55.0% | |
| AGCTCGACGACATGACTCTC+CGG | - | Chr8:52283608-52283627 | MsG0880044972.01.T01:CDS | 55.0% | |
| AGGATTAGGTCACTCGTCGG+TGG | - | Chr8:52284149-52284168 | MsG0880044972.01.T01:CDS | 55.0% | |
| AGGTATCCAAGAGGGGACGT+CGG | + | Chr8:52283368-52283387 | None:intergenic | 55.0% | |
| AGGTGAAACCTCCCGTTCCT+TGG | + | Chr8:52284024-52284043 | None:intergenic | 55.0% | |
| AGTCATGTCGTCGAGCTCAC+CGG | + | Chr8:52283605-52283624 | None:intergenic | 55.0% | |
| ATTAGGTCACTCGTCGGTGG+AGG | - | Chr8:52284152-52284171 | MsG0880044972.01.T01:CDS | 55.0% | |
| CAGGTCATGCTACCACGTTG+CGG | - | Chr8:52283631-52283650 | MsG0880044972.01.T01:CDS | 55.0% | |
| CAGTGGCGGTGCATGAGATT+GGG | - | Chr8:52284118-52284137 | MsG0880044972.01.T01:CDS | 55.0% | |
| CCATTGCCGGTATTCCTCTC+CGG | + | Chr8:52284306-52284325 | None:intergenic | 55.0% | |
| CTAACCTACGCGTTCTTCCC+CGG | - | Chr8:52283805-52283824 | MsG0880044972.01.T01:CDS | 55.0% | |
| CTTCTTCTTTGTGGTCCCCG+TGG | - | Chr8:52284340-52284359 | MsG0880044972.01.T01:CDS | 55.0% | |
| CTTTCTCTCCAAGGAACGGG+AGG | - | Chr8:52284013-52284032 | MsG0880044972.01.T01:CDS | 55.0% | |
| GAGAGGAATACCGGCAATGG+TGG | - | Chr8:52284306-52284325 | MsG0880044972.01.T01:CDS | 55.0% | |
| GAGCCGTTTGACGGAAGCTT+AGG | - | Chr8:52283976-52283995 | MsG0880044972.01.T01:CDS | 55.0% | |
| GAGGCTGTAACCACCATTGC+CGG | + | Chr8:52284319-52284338 | None:intergenic | 55.0% | |
| GCAGAGGACTGGGTAGTTTC+CGG | - | Chr8:52284051-52284070 | MsG0880044972.01.T01:CDS | 55.0% | |
| GGATTCTTCAACGGCGACCA+TGG | - | Chr8:52283946-52283965 | MsG0880044972.01.T01:CDS | 55.0% | |
| GTTAGCTCCTGCTTTCCCTC+CGG | + | Chr8:52283790-52283809 | None:intergenic | 55.0% | |
| GTTTCACCTTGACGCTGCAG+AGG | - | Chr8:52284035-52284054 | MsG0880044972.01.T01:CDS | 55.0% | |
| TATTTCCCGACGTCCCCTCT+TGG | - | Chr8:52283359-52283378 | MsG0880044972.01.T01:CDS | 55.0% | |
| TCAGTGGCGGTGCATGAGAT+TGG | - | Chr8:52284117-52284136 | MsG0880044972.01.T01:CDS | 55.0% | |
| TCGTCACCGGAGAGGAATAC+CGG | - | Chr8:52284297-52284316 | MsG0880044972.01.T01:CDS | 55.0% | |
| TGACGGAAGCTTAGGAACGC+TGG | - | Chr8:52283984-52284003 | MsG0880044972.01.T01:CDS | 55.0% | |
| TGGCGCATGCTTTCTCTCCA+AGG | - | Chr8:52284004-52284023 | MsG0880044972.01.T01:CDS | 55.0% | |
| TTCAACGGCGACCATGGAGA+CGG | - | Chr8:52283952-52283971 | MsG0880044972.01.T01:CDS | 55.0% | |
| ACCTTGACGCTGCAGAGGAC+TGG | - | Chr8:52284040-52284059 | MsG0880044972.01.T01:CDS | 60.0% | |
| ATATCCGCTACGCCGCAACG+TGG | + | Chr8:52283646-52283665 | None:intergenic | 60.0% | |
| CCGGAGAGGAATACCGGCAA+TGG | - | Chr8:52284303-52284322 | MsG0880044972.01.T01:CDS | 60.0% | |
| CCGTCTTTCCCGGTCAACCA+CGG | - | Chr8:52283761-52283780 | MsG0880044972.01.T01:CDS | 60.0% | |
| CCGTGGTTGACCGGGAAAGA+CGG | + | Chr8:52283764-52283783 | None:intergenic | 60.0% | |
| CCTTGACGCTGCAGAGGACT+GGG | - | Chr8:52284041-52284060 | MsG0880044972.01.T01:CDS | 60.0% | |
| CGACGACTTCGACACATCGC+CGG | + | Chr8:52284073-52284092 | None:intergenic | 60.0% | |
| CTCCACCATCACGTCGTCAC+CGG | - | Chr8:52284284-52284303 | MsG0880044972.01.T01:CDS | 60.0% | |
| GGTATCCAAGAGGGGACGTC+GGG | + | Chr8:52283367-52283386 | None:intergenic | 60.0% | |
| GTCCCCTCTTGGATACCTCC+CGG | - | Chr8:52283370-52283389 | MsG0880044972.01.T01:CDS | 60.0% | |
| GTTACCGGGGAAGAACGCGT+AGG | + | Chr8:52283812-52283831 | None:intergenic | 60.0% | |
| TCGCAACAGCGTTTGCACGG+TGG | - | Chr8:52283860-52283879 | MsG0880044972.01.T01:CDS | 60.0% | |
| TCTTTCCCGGTCAACCACGG+TGG | - | Chr8:52283764-52283783 | MsG0880044972.01.T01:CDS | 60.0% | |
| TGTGTCCTTGCCGGCGTTCA+TGG | + | Chr8:52283686-52283705 | None:intergenic | 60.0% | |
| ! | GTTTTCGCCTTGACGGCAGC+TGG | + | Chr8:52283437-52283456 | None:intergenic | 60.0% |
| !! | AGTGCCGGGAGGTATCCAAG+AGG | + | Chr8:52283377-52283396 | None:intergenic | 60.0% |
| !! | GTGCCGGGAGGTATCCAAGA+GGG | + | Chr8:52283376-52283395 | None:intergenic | 60.0% |
| !! | TGCCGGGAGGTATCCAAGAG+GGG | + | Chr8:52283375-52283394 | None:intergenic | 60.0% |
| AGCGTTTGCACGGTGGTCGG+AGG | - | Chr8:52283867-52283886 | MsG0880044972.01.T01:CDS | 65.0% | |
| CAAACGGCTCGCCGTCTCCA+TGG | + | Chr8:52283966-52283985 | None:intergenic | 65.0% | |
| CCATCACGTCGTCACCGGAG+AGG | - | Chr8:52284289-52284308 | MsG0880044972.01.T01:CDS | 65.0% | |
| CCCAGTCCTCTGCAGCGTCA+AGG | + | Chr8:52284044-52284063 | None:intergenic | 65.0% | |
| CCTCTCCGGTGACGACGTGA+TGG | + | Chr8:52284292-52284311 | None:intergenic | 65.0% | |
| CGACGACATGACTCTCCGGC+AGG | - | Chr8:52283612-52283631 | MsG0880044972.01.T01:CDS | 65.0% | |
| CGGTTACATTCCCCGCTCGC+CGG | - | Chr8:52283498-52283517 | MsG0880044972.01.T01:CDS | 65.0% | |
| CTCCGGTGACGACGTGATGG+TGG | + | Chr8:52284289-52284308 | None:intergenic | 65.0% | |
| GCTACCACGTTGCGGCGTAG+CGG | - | Chr8:52283639-52283658 | MsG0880044972.01.T01:CDS | 65.0% | |
| GGAGACGGCGAGCCGTTTGA+CGG | - | Chr8:52283967-52283986 | MsG0880044972.01.T01:CDS | 65.0% | |
| ACGGTGGCCGGAGGGAAAGC+AGG | - | Chr8:52283780-52283799 | MsG0880044972.01.T01:CDS | 70.0% | |
| AGGCATCCCACGGGCCAACC+TGG | + | Chr8:52283402-52283421 | None:intergenic | 70.0% | |
| CTCCGGCCACCGTGGTTGAC+CGG | + | Chr8:52283773-52283792 | None:intergenic | 70.0% | |
| GATACCTCCCGGCACTCCCC+AGG | - | Chr8:52283381-52283400 | MsG0880044972.01.T01:CDS | 70.0% | |
| GCATCCCACGGGCCAACCTG+GGG | + | Chr8:52283400-52283419 | None:intergenic | 70.0% | |
| GGCATCCCACGGGCCAACCT+GGG | + | Chr8:52283401-52283420 | None:intergenic | 70.0% | |
| GGTCAACCACGGTGGCCGGA+GGG | - | Chr8:52283772-52283791 | MsG0880044972.01.T01:CDS | 70.0% | |
| TCCCGGTCAACCACGGTGGC+CGG | - | Chr8:52283768-52283787 | MsG0880044972.01.T01:CDS | 70.0% | |
| TCCGGCCACCGTGGTTGACC+GGG | + | Chr8:52283772-52283791 | None:intergenic | 70.0% | |
| TGCTTTCCCTCCGGCCACCG+TGG | + | Chr8:52283781-52283800 | None:intergenic | 70.0% | |
| ! | CACTCCCCAGGTTGGCCCGT+GGG | - | Chr8:52283393-52283412 | MsG0880044972.01.T01:CDS | 70.0% |
| CCTCCCGGCACTCCCCAGGT+TGG | - | Chr8:52283385-52283404 | MsG0880044972.01.T01:CDS | 75.0% | |
| CGGTCAACCACGGTGGCCGG+AGG | - | Chr8:52283771-52283790 | MsG0880044972.01.T01:CDS | 75.0% | |
| ! | CGGGCCAACCTGGGGAGTGC+CGG | + | Chr8:52283392-52283411 | None:intergenic | 75.0% |
| ! | GCACTCCCCAGGTTGGCCCG+TGG | - | Chr8:52283392-52283411 | MsG0880044972.01.T01:CDS | 75.0% |
| !! | CCAACCTGGGGAGTGCCGGG+AGG | + | Chr8:52283388-52283407 | None:intergenic | 75.0% |
| !! | GGGCCAACCTGGGGAGTGCC+GGG | + | Chr8:52283391-52283410 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 52283286 | 52284380 | 52283286 | ID=MsG0880044972.01;Name=MsG0880044972.01 |
| Chr8 | mRNA | 52283286 | 52284380 | 52283286 | ID=MsG0880044972.01.T01;Parent=MsG0880044972.01;Name=MsG0880044972.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|364 |
| Chr8 | exon | 52283286 | 52284380 | 52283286 | ID=MsG0880044972.01.T01:exon:22379;Parent=MsG0880044972.01.T01 |
| Chr8 | CDS | 52283286 | 52284380 | 52283286 | ID=MsG0880044972.01.T01:cds;Parent=MsG0880044972.01.T01 |
| Gene Sequence |
| Protein sequence |
