AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045023.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045023.01.T01 MTR_8g063700 92.448 384 29 0 1 384 1 384 0.0 698
MsG0880045023.01.T01 MTR_5g034750 39.303 201 115 4 31 228 70 266 1.07e-35 137
MsG0880045023.01.T01 MTR_8g063760 39.706 204 111 6 31 223 73 275 5.17e-34 132
MsG0880045023.01.T01 MTR_6g007720 41.414 198 97 5 14 195 43 237 6.70e-33 129
MsG0880045023.01.T01 MTR_2g075860 34.928 209 130 2 22 224 57 265 8.89e-33 128
MsG0880045023.01.T01 MTR_8g058630 48.649 111 57 0 91 201 24 134 2.02e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045023.01.T01 AT1G23890 52.982 285 128 4 13 296 10 289 1.19e-98 299
MsG0880045023.01.T01 AT1G23890 57.456 228 92 4 13 239 10 233 3.98e-88 267
MsG0880045023.01.T01 AT5G14890 35.043 234 144 4 27 258 71 298 1.54e-37 141
MsG0880045023.01.T01 AT1G70280 40.686 204 112 5 31 226 5 207 6.63e-37 139
MsG0880045023.01.T01 AT1G23880 40.000 205 116 4 27 228 1 201 7.65e-37 138
MsG0880045023.01.T01 AT1G70280 40.686 204 112 5 31 226 67 269 1.29e-36 139
MsG0880045023.01.T01 AT1G23880 40.000 205 116 4 27 228 125 325 2.18e-36 139
MsG0880045023.01.T01 AT3G14860 39.801 201 103 5 31 227 74 260 1.59e-35 136
MsG0880045023.01.T01 AT3G14860 39.801 201 103 5 31 227 74 260 1.63e-35 136

Find 106 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATCATCTGTTTCTAATT+TGG 0.069123 8:+52886831 MsG0880045023.01.T01:CDS
TCCTACCCTGTGTGCTTTAC+TGG 0.124774 8:+52885561 MsG0880045023.01.T01:CDS
GGCACCCTTTCCTTGGTTTA+AGG 0.124852 8:-52886767 None:intergenic
AAATCAACAGCAAAGCTTCT+AGG 0.227616 8:-52884431 None:intergenic
GAATCATCTGTTTCTAATTT+GGG 0.243076 8:+52886832 MsG0880045023.01.T01:CDS
AACCTTGGGAAATTGGTAAT+TGG 0.254756 8:-52884232 None:intergenic
TGAAGAATGTTACTATCTTT+AGG 0.300782 8:-52886805 None:intergenic
CTTACATGAGGGATGATATA+AGG 0.320763 8:-52886321 None:intergenic
GCAGTTATGGCTTGGACTCT+AGG 0.333602 8:+52886249 MsG0880045023.01.T01:CDS
TCCTTGGTTTAAGGCTTCCT+TGG 0.337737 8:-52886758 None:intergenic
GAGGATGAGATCGGAGGAAA+TGG 0.342852 8:-52884177 None:intergenic
AACAGGGCTTGGTGCAGTTA+TGG 0.370447 8:+52886236 MsG0880045023.01.T01:intron
GAAGCATTGCCAAACCAATC+TGG 0.371983 8:+52886456 MsG0880045023.01.T01:CDS
TTCTCCAAGGCGACCGCACT+TGG 0.373704 8:+52886618 MsG0880045023.01.T01:CDS
CTAGGTGTTACCACAATTGC+TGG 0.377628 8:+52885457 MsG0880045023.01.T01:intron
CGGTACTAGCTTCCCCAGAT+TGG 0.384147 8:-52886470 None:intergenic
CTTCCTTGGTTGAATCCATT+AGG 0.384806 8:-52886744 None:intergenic
GGTGATGGTGTAACCTTCTT+CGG 0.393114 8:-52884099 None:intergenic
AAGGAAAGGGTGCCAGTGTT+AGG 0.396787 8:+52886776 MsG0880045023.01.T01:CDS
GGAATGTTTATGTTGCTGAT+AGG 0.397659 8:+52884459 MsG0880045023.01.T01:CDS
AACTCATCAAATCCTTCAAT+TGG 0.402759 8:-52886711 None:intergenic
GAGGAGATGGAGTGGAAGGA+AGG 0.403361 8:-52883946 None:intergenic
AAGGAGGAGGATTGTACCCT+TGG 0.405780 8:+52885625 MsG0880045023.01.T01:CDS
AGGTGAAAAGGAGGAGGAGA+TGG 0.409365 8:-52883959 None:intergenic
TGTACCCTTGGATCTAAATC+TGG 0.418838 8:+52885637 MsG0880045023.01.T01:CDS
GATTTAGATGCTTACAATAG+TGG 0.423057 8:+52886658 MsG0880045023.01.T01:CDS
CTAGCTTCCCCAGATTGGTT+TGG 0.426878 8:-52886465 None:intergenic
GGCTTGGTGCAGTTATGGCT+TGG 0.430697 8:+52886241 MsG0880045023.01.T01:CDS
GCTTCCATGTCGCGGTGAAA+TGG 0.431149 8:-52886438 None:intergenic
GACTCCAAGTGCGGTCGCCT+TGG 0.431394 8:-52886622 None:intergenic
TAACACTGGCACCCTTTCCT+TGG 0.431837 8:-52886774 None:intergenic
GGTCCATCAGATTAATTTGA+AGG 0.441933 8:+52885606 MsG0880045023.01.T01:CDS
GTGATGGTGTAACCTTCTTC+GGG 0.443407 8:-52884098 None:intergenic
GAGATGGAGTGGAAGGAAGG+TGG 0.449513 8:-52883943 None:intergenic
GGTTGTTGGTGAATGGAGTA+AGG 0.450990 8:-52884155 None:intergenic
AATTAATCTGATGGACCAAC+TGG 0.451149 8:-52885600 None:intergenic
ATAAGGAAAATCAGTACTAA+TGG 0.452159 8:+52884494 MsG0880045023.01.T01:CDS
AAGCTTGTGACCGTCGAGTA+TGG 0.452191 8:-52884123 None:intergenic
TGTATACTCGGCTTAGTGAT+TGG 0.452307 8:+52886285 MsG0880045023.01.T01:CDS
TTACATGAGGGATGATATAA+GGG 0.453303 8:-52886320 None:intergenic
TGCTAGCTGCAGTTGCTCCT+CGG 0.455591 8:+52886522 MsG0880045023.01.T01:CDS
ATGGTGATGTGGGTTTAGCT+AGG 0.460434 8:+52884399 MsG0880045023.01.T01:CDS
GGAAATGGGTTGTTGGTGAA+TGG 0.464336 8:-52884162 None:intergenic
TCACGATCGCAATGAGACTT+TGG 0.466988 8:+52886548 MsG0880045023.01.T01:CDS
CAGTTATGGCTTGGACTCTA+GGG 0.467711 8:+52886250 MsG0880045023.01.T01:CDS
AAGCTCGTCGTTCCCGAAGA+AGG 0.473310 8:+52884086 MsG0880045023.01.T01:CDS
AAGCATTGCCAAACCAATCT+GGG 0.477992 8:+52886457 MsG0880045023.01.T01:CDS
GGAGGAGGAGATGGAGTGGA+AGG 0.478918 8:-52883950 None:intergenic
GGAGAGAGAAGAAGGTGAAA+AGG 0.479052 8:-52883971 None:intergenic
ATAGGTTTAACCAGGTGATA+AGG 0.487420 8:+52884477 MsG0880045023.01.T01:CDS
AAAAGGAGGAGGAGATGGAG+TGG 0.487474 8:-52883954 None:intergenic
TCAGATTAATTTGAAGGAGG+AGG 0.492054 8:+52885612 MsG0880045023.01.T01:CDS
TTCACCTTCTTCTCTCTCCA+CGG 0.497873 8:+52883975 MsG0880045023.01.T01:CDS
TGGAGTGGAAGGAAGGTGGA+AGG 0.503751 8:-52883939 None:intergenic
AGAAGAAGGTGAAAAGGAGG+AGG 0.504047 8:-52883965 None:intergenic
GAGAGAAGAAGGTGAAAAGG+AGG 0.504683 8:-52883968 None:intergenic
GTTACCGTGGAGAGAGAAGA+AGG 0.504806 8:-52883979 None:intergenic
AGGATGAGATCGGAGGAAAT+GGG 0.513437 8:-52884176 None:intergenic
CCTCCTTCAAATTAATCTGA+TGG 0.522306 8:-52885609 None:intergenic
ACCAAGGAAGCCTTAAACCA+AGG 0.524271 8:+52886757 MsG0880045023.01.T01:CDS
TGAAGATCCTCCAGCAATTG+TGG 0.527993 8:-52885467 None:intergenic
AAGTGCTGTTTGTAGAATCA+AGG 0.531120 8:-52884199 None:intergenic
GATCGGAGGAAATGGGTTGT+TGG 0.531775 8:-52884169 None:intergenic
GAAGGTGGAAGGAGAAGACA+TGG 0.548627 8:-52883928 None:intergenic
TTCAGAAAAGTCAAGCATCA+AGG 0.550620 8:+52885486 MsG0880045023.01.T01:CDS
ACATCACCATCTTCATATCC+AGG 0.558997 8:-52884386 None:intergenic
CTAATTTGGGAATTGTGAAG+AGG 0.560931 8:+52886845 MsG0880045023.01.T01:CDS
CGCGGTGAAATGGTAACGGC+TGG 0.563592 8:-52886428 None:intergenic
GAAGCCTTAAACCAAGGAAA+GGG 0.571093 8:+52886763 MsG0880045023.01.T01:CDS
TGTTGCTGATAGGTTTAACC+AGG 0.574625 8:+52884469 MsG0880045023.01.T01:CDS
TTGATGCCGGAGTAGAGTGT+CGG 0.576767 8:-52886490 None:intergenic
TTATTACTATCATGTATACT+CGG 0.581002 8:+52886273 MsG0880045023.01.T01:CDS
GGAAGCCTTAAACCAAGGAA+AGG 0.583343 8:+52886762 MsG0880045023.01.T01:CDS
GTTGTTGGTGAATGGAGTAA+GGG 0.583971 8:-52884154 None:intergenic
ATATTGACTTCGTTTCTCCA+AGG 0.589514 8:+52886605 MsG0880045023.01.T01:CDS
GAAAAGTCAAGCATCAAGGA+TGG 0.589681 8:+52885490 MsG0880045023.01.T01:CDS
AGAATCAAGGAGGATGAGAT+CGG 0.591699 8:-52884186 None:intergenic
GTTACCATTTCACCGCGACA+TGG 0.594639 8:+52886434 MsG0880045023.01.T01:CDS
CTCACCAGATTTAGATCCAA+GGG 0.603017 8:-52885641 None:intergenic
TTAGTGGATTAAACGCACTC+TGG 0.605663 8:+52883854 None:intergenic
ACCGTCGAGTATGGTGGTGA+TGG 0.607226 8:-52884114 None:intergenic
GTCCAATTACCAATTTCCCA+AGG 0.608507 8:+52884230 MsG0880045023.01.T01:CDS
TTGGGAAATTGGTAATTGGA+CGG 0.610799 8:-52884228 None:intergenic
TCTCACCAGATTTAGATCCA+AGG 0.612143 8:-52885642 None:intergenic
GTCAGATCATCAGCACCAGT+TGG 0.621134 8:+52885585 MsG0880045023.01.T01:CDS
CCATCAGATTAATTTGAAGG+AGG 0.625341 8:+52885609 MsG0880045023.01.T01:CDS
ATGTCGCGGTGAAATGGTAA+CGG 0.625383 8:-52886432 None:intergenic
TTGGCAATGCTTCCATGTCG+CGG 0.636895 8:-52886446 None:intergenic
GGGTCACCTGGATATGAAGA+TGG 0.638369 8:+52884380 MsG0880045023.01.T01:CDS
TTTAGGTCTGATCCTAACAC+TGG 0.638808 8:-52886788 None:intergenic
ACCATCACCACCATACTCGA+CGG 0.641784 8:+52884113 MsG0880045023.01.T01:CDS
CTAGTACCGACACTCTACTC+CGG 0.652615 8:+52886484 MsG0880045023.01.T01:CDS
TGGATATGAAGATGGTGATG+TGG 0.655488 8:+52884388 MsG0880045023.01.T01:CDS
ATCAAGGAGGATGAGATCGG+AGG 0.662340 8:-52884183 None:intergenic
GGATATGAAGATGGTGATGT+GGG 0.664075 8:+52884389 MsG0880045023.01.T01:CDS
AGCATTGCCAAACCAATCTG+GGG 0.675300 8:+52886458 MsG0880045023.01.T01:CDS
CTTGTGACCGTCGAGTATGG+TGG 0.680076 8:-52884120 None:intergenic
ACCAGTAAAGCACACAGGGT+AGG 0.681467 8:-52885562 None:intergenic
CTGACACCAGTAAAGCACAC+AGG 0.684231 8:-52885567 None:intergenic
TGACACCAGTAAAGCACACA+GGG 0.684722 8:-52885566 None:intergenic
ACACCTAATGGATTCAACCA+AGG 0.685789 8:+52886741 MsG0880045023.01.T01:CDS
CATGAGGGATGATATAAGGG+CGG 0.692772 8:-52886317 None:intergenic
TGCTGTTTGTAGAATCAAGG+AGG 0.696355 8:-52884196 None:intergenic
GGTGTTACCACAATTGCTGG+AGG 0.701163 8:+52885460 MsG0880045023.01.T01:intron
AAAGACACAGACTCCAAGTG+CGG 0.716987 8:-52886631 None:intergenic
CATTGCGATCGTGAAAACCG+AGG 0.724193 8:-52886539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAAATATCATTAGT+AGG + Chr8:52885906-52885925 MsG0880045023.01.T01:intron 10.0%
!!! ATCTAGATAAATTTTAATAA+GGG + Chr8:52886018-52886037 MsG0880045023.01.T01:intron 10.0%
!! ATTTATCTAAGAAAAATTTG+AGG - Chr8:52884679-52884698 None:intergenic 15.0%
!!! GATCTAGATAAATTTTAATA+AGG + Chr8:52886017-52886036 MsG0880045023.01.T01:intron 15.0%
!!! TAATATGATATTGATTTCAA+AGG - Chr8:52885889-52885908 None:intergenic 15.0%
!! AAAAAAAGAAAAAAGAACCT+TGG - Chr8:52884250-52884269 None:intergenic 20.0%
!! AAAAAAGAAAAAAGAACCTT+GGG - Chr8:52884249-52884268 None:intergenic 20.0%
!! AAAAAATCTTCATAAGAAGA+TGG - Chr8:52886353-52886372 None:intergenic 20.0%
!! AAAAATCTTCATAAGAAGAT+GGG - Chr8:52886352-52886371 None:intergenic 20.0%
!! AAAATGAAAAATGAGAGAAA+GGG - Chr8:52884020-52884039 None:intergenic 20.0%
!! TTATTACTATCATGTATACT+CGG + Chr8:52886273-52886292 MsG0880045023.01.T01:CDS 20.0%
!!! GAATCTTTGTAATTTTAAGA+TGG + Chr8:52885371-52885390 MsG0880045023.01.T01:intron 20.0%
!!! TATGTTAGTTAGTTCTATTT+TGG + Chr8:52884606-52884625 MsG0880045023.01.T01:intron 20.0%
!!! TGTAAAATTTTGATTTTGCT+GGG + Chr8:52885837-52885856 MsG0880045023.01.T01:intron 20.0%
!!! TTCTTATGAAGATTTTTTGT+GGG + Chr8:52886355-52886374 MsG0880045023.01.T01:intron 20.0%
!!! TTGTAAAATTTTGATTTTGC+TGG + Chr8:52885836-52885855 MsG0880045023.01.T01:intron 20.0%
! AAATGAAAAATGAGAGAAAG+GGG - Chr8:52884019-52884038 None:intergenic 25.0%
! AATGACCAAAATAGACAAAA+GGG - Chr8:52885435-52885454 None:intergenic 25.0%
! ATAAGGAAAATCAGTACTAA+TGG + Chr8:52884494-52884513 MsG0880045023.01.T01:CDS 25.0%
! ATGAAATTTAGGTCATCTTA+AGG - Chr8:52884967-52884986 None:intergenic 25.0%
! CATATAAAGTTTCAGTCTTT+AGG + Chr8:52884556-52884575 MsG0880045023.01.T01:intron 25.0%
! CGAATTAGAAAAATACATCA+TGG + Chr8:52884734-52884753 MsG0880045023.01.T01:intron 25.0%
! GAAAATGAAAAATGAGAGAA+AGG - Chr8:52884021-52884040 None:intergenic 25.0%
! GCAATTATATAATTCCAGTT+TGG - Chr8:52886082-52886101 None:intergenic 25.0%
! TGAAGAATGTTACTATCTTT+AGG - Chr8:52886808-52886827 None:intergenic 25.0%
! TTAGGTTTATGAAATTGGTT+TGG + Chr8:52884574-52884593 MsG0880045023.01.T01:intron 25.0%
!! AAAAGCTATCTCTTTTAAAC+AGG + Chr8:52886219-52886238 MsG0880045023.01.T01:intron 25.0%
!! AAAGCTATCTCTTTTAAACA+GGG + Chr8:52886220-52886239 MsG0880045023.01.T01:intron 25.0%
!! AGTCTTTAGGTTTATGAAAT+TGG + Chr8:52884569-52884588 MsG0880045023.01.T01:intron 25.0%
!! ATATAATTCCAGTTTGGTTT+AGG - Chr8:52886076-52886095 None:intergenic 25.0%
!! ATGTGAAATTAAGGTTTTCT+AGG + Chr8:52884886-52884905 MsG0880045023.01.T01:intron 25.0%
!! ATTTTGGATGTATAGTTGTA+TGG + Chr8:52884622-52884641 MsG0880045023.01.T01:intron 25.0%
!! CTAATTTGCATGTGAAATTA+AGG + Chr8:52884877-52884896 MsG0880045023.01.T01:intron 25.0%
!! CTAGTCTTTCTATGAAATTT+AGG - Chr8:52884978-52884997 None:intergenic 25.0%
!! TGATGTATTTTTCTAATTCG+AGG - Chr8:52884734-52884753 None:intergenic 25.0%
!! TGTGAAATTAAGGTTTTCTA+GGG + Chr8:52884887-52884906 MsG0880045023.01.T01:intron 25.0%
!! TTTTGGATGTATAGTTGTAT+GGG + Chr8:52884623-52884642 MsG0880045023.01.T01:intron 25.0%
!!! AGAATCATCTGTTTCTAATT+TGG + Chr8:52886831-52886850 MsG0880045023.01.T01:CDS 25.0%
!!! CTTCTTATGAAGATTTTTTG+TGG + Chr8:52886354-52886373 MsG0880045023.01.T01:intron 25.0%
!!! GAATCATCTGTTTCTAATTT+GGG + Chr8:52886832-52886851 MsG0880045023.01.T01:CDS 25.0%
!!! TAAGTATTTTGACCAATTGA+AGG + Chr8:52886699-52886718 MsG0880045023.01.T01:CDS 25.0%
!!! TATGATATTGATTTCAAAGG+TGG - Chr8:52885886-52885905 None:intergenic 25.0%
AAAAAAGAACCTTGGGAAAT+TGG - Chr8:52884242-52884261 None:intergenic 30.0%
AACAATCAACACAAACAAGA+TGG - Chr8:52884532-52884551 None:intergenic 30.0%
AACTCATCAAATCCTTCAAT+TGG - Chr8:52886714-52886733 None:intergenic 30.0%
AATGAAAAATGAGAGAAAGG+GGG - Chr8:52884018-52884037 None:intergenic 30.0%
AGAGATTGATATTGAACATG+TGG - Chr8:52885312-52885331 None:intergenic 30.0%
ATGCAAATTAGTTCATAGTG+TGG - Chr8:52884868-52884887 None:intergenic 30.0%
CAATGACCAAAATAGACAAA+AGG - Chr8:52885436-52885455 None:intergenic 30.0%
CATTTCAAAGATTAAGATCG+AGG - Chr8:52886158-52886177 None:intergenic 30.0%
CCTCTAACAACTAAAGTTAA+CGG + Chr8:52885056-52885075 MsG0880045023.01.T01:intron 30.0%
CTACATAGTTCAGTTAGAAT+TGG - Chr8:52886397-52886416 None:intergenic 30.0%
GAGATTGATATTGAACATGT+GGG - Chr8:52885311-52885330 None:intergenic 30.0%
GATTTAGATGCTTACAATAG+TGG + Chr8:52886658-52886677 MsG0880045023.01.T01:CDS 30.0%
TATAATAAGTGTCATAGTCG+TGG - Chr8:52886195-52886214 None:intergenic 30.0%
TATTAAATGCATTGTTGCTG+TGG + Chr8:52885205-52885224 MsG0880045023.01.T01:intron 30.0%
TTACATGAGGGATGATATAA+GGG - Chr8:52886323-52886342 None:intergenic 30.0%
TTATCTAGATCAAGTAACCA+CGG - Chr8:52886008-52886027 None:intergenic 30.0%
! GAGAATTAGTTTGAGTGAAT+AGG + Chr8:52884699-52884718 MsG0880045023.01.T01:intron 30.0%
! TCAGTACTAATGGTATGTTT+TGG + Chr8:52884504-52884523 MsG0880045023.01.T01:intron 30.0%
!! TTTATGAAATTGGTTTGGAC+TGG + Chr8:52884579-52884598 MsG0880045023.01.T01:intron 30.0%
!!! CTTTGTAATTTTAAGATGGC+TGG + Chr8:52885375-52885394 MsG0880045023.01.T01:intron 30.0%
!!! TAGGGATTATTTTTGCCAAT+AGG + Chr8:52884905-52884924 MsG0880045023.01.T01:intron 30.0%
AAATCAACAGCAAAGCTTCT+AGG - Chr8:52884434-52884453 None:intergenic 35.0%
ATAGGTTTAACCAGGTGATA+AGG + Chr8:52884477-52884496 MsG0880045023.01.T01:CDS 35.0%
CAATCATGTATATGATTCCG+TGG + Chr8:52885988-52886007 MsG0880045023.01.T01:intron 35.0%
CCGTTAACTTTAGTTGTTAG+AGG - Chr8:52885059-52885078 None:intergenic 35.0%
CCTCCTTCAAATTAATCTGA+TGG - Chr8:52885612-52885631 None:intergenic 35.0%
CTAATTTGGGAATTGTGAAG+AGG + Chr8:52886845-52886864 MsG0880045023.01.T01:CDS 35.0%
CTTACATGAGGGATGATATA+AGG - Chr8:52886324-52886343 None:intergenic 35.0%
GCATTTACTAATTCGCGAAA+GGG + Chr8:52885096-52885115 MsG0880045023.01.T01:intron 35.0%
GGAATGTTTATGTTGCTGAT+AGG + Chr8:52884459-52884478 MsG0880045023.01.T01:CDS 35.0%
GTTTGAGTGAATAGGCAAAT+TGG + Chr8:52884707-52884726 MsG0880045023.01.T01:intron 35.0%
TCAATAATTGCAATTGCGCA+TGG - Chr8:52884935-52884954 None:intergenic 35.0%
TCTAACTGAACTATGTAGAC+AGG + Chr8:52886399-52886418 MsG0880045023.01.T01:intron 35.0%
TGATGTCAGATCAACATATC+CGG + Chr8:52885014-52885033 MsG0880045023.01.T01:intron 35.0%
TGCATTTACTAATTCGCGAA+AGG + Chr8:52885095-52885114 MsG0880045023.01.T01:intron 35.0%
TTCAGAAAAGTCAAGCATCA+AGG + Chr8:52885486-52885505 MsG0880045023.01.T01:CDS 35.0%
TTTAGACACTCGGTTAACTT+GGG + Chr8:52885343-52885362 MsG0880045023.01.T01:intron 35.0%
! AACCTTGGGAAATTGGTAAT+TGG - Chr8:52884235-52884254 None:intergenic 35.0%
! AATTAATCTGATGGACCAAC+TGG - Chr8:52885603-52885622 None:intergenic 35.0%
! CCATCAGATTAATTTGAAGG+AGG + Chr8:52885609-52885628 MsG0880045023.01.T01:CDS 35.0%
! GGTCCATCAGATTAATTTGA+AGG + Chr8:52885606-52885625 MsG0880045023.01.T01:CDS 35.0%
! TACAACATGCTTTAGACACT+CGG + Chr8:52885333-52885352 MsG0880045023.01.T01:intron 35.0%
! TATCTCTTTTAAACAGGGCT+TGG + Chr8:52886225-52886244 MsG0880045023.01.T01:intron 35.0%
! TCAGATTAATTTGAAGGAGG+AGG + Chr8:52885612-52885631 MsG0880045023.01.T01:CDS 35.0%
! TGGTGAGAGTTTAGAATTTG+AGG + Chr8:52885657-52885676 MsG0880045023.01.T01:intron 35.0%
! TTGGGAAATTGGTAATTGGA+CGG - Chr8:52884231-52884250 None:intergenic 35.0%
!! AAGTGCTGTTTGTAGAATCA+AGG - Chr8:52884202-52884221 None:intergenic 35.0%
!! AGTGTTTTCAAGAGGTTTTC+TGG + Chr8:52884353-52884372 MsG0880045023.01.T01:CDS 35.0%
!! ATATTGACTTCGTTTCTCCA+AGG + Chr8:52886605-52886624 MsG0880045023.01.T01:CDS 35.0%
!! GAGTTTTGATGAACACCTAA+TGG + Chr8:52886729-52886748 MsG0880045023.01.T01:CDS 35.0%
!! TCAAGAGGTTTTCTGGAAAT+GGG + Chr8:52884360-52884379 MsG0880045023.01.T01:CDS 35.0%
!! TGATTCTGTTAACTTGTACC+AGG + Chr8:52884783-52884802 MsG0880045023.01.T01:intron 35.0%
!! TTCAAGAGGTTTTCTGGAAA+TGG + Chr8:52884359-52884378 MsG0880045023.01.T01:CDS 35.0%
!!! AGCTTTGCTGTTGATTTTAG+AGG + Chr8:52884437-52884456 MsG0880045023.01.T01:CDS 35.0%
!!! GAAGATTTTTTGTGGGAACA+TGG + Chr8:52886362-52886381 MsG0880045023.01.T01:intron 35.0%
!!! GCTTTGCTGTTGATTTTAGA+GGG + Chr8:52884438-52884457 MsG0880045023.01.T01:CDS 35.0%
!!! GTCTATTTTGGTCATTGACT+AGG + Chr8:52885439-52885458 MsG0880045023.01.T01:intron 35.0%
!!! TACTGATTTTCCTTATCACC+TGG - Chr8:52884490-52884509 None:intergenic 35.0%
!!! TTGCAGAAAGTGTTTTCAAG+AGG + Chr8:52884345-52884364 MsG0880045023.01.T01:intron 35.0%
ACATCACCATCTTCATATCC+AGG - Chr8:52884389-52884408 None:intergenic 40.0%
AGAATCAAGGAGGATGAGAT+CGG - Chr8:52884189-52884208 None:intergenic 40.0%
AGATGGGAGTAACTTACATG+AGG - Chr8:52886336-52886355 None:intergenic 40.0%
AGCTAGAAACTTATCCCTTG+TGG + Chr8:52885257-52885276 MsG0880045023.01.T01:intron 40.0%
CTCACCAGATTTAGATCCAA+GGG - Chr8:52885644-52885663 None:intergenic 40.0%
CTTCCTTGGTTGAATCCATT+AGG - Chr8:52886747-52886766 None:intergenic 40.0%
CTTTAGACACTCGGTTAACT+TGG + Chr8:52885342-52885361 MsG0880045023.01.T01:intron 40.0%
GAAAAGTCAAGCATCAAGGA+TGG + Chr8:52885490-52885509 MsG0880045023.01.T01:CDS 40.0%
GAAATCAGTCAGTGCAATGA+TGG - Chr8:52885815-52885834 None:intergenic 40.0%
GAAGCCTTAAACCAAGGAAA+GGG + Chr8:52886763-52886782 MsG0880045023.01.T01:CDS 40.0%
GATGGGAGTAACTTACATGA+GGG - Chr8:52886335-52886354 None:intergenic 40.0%
GGTATAGAACATCATCTGGT+GGG - Chr8:52885290-52885309 None:intergenic 40.0%
GTCCAATTACCAATTTCCCA+AGG + Chr8:52884230-52884249 MsG0880045023.01.T01:CDS 40.0%
GTGTTCATCCTAAACCAAAC+TGG + Chr8:52886065-52886084 MsG0880045023.01.T01:intron 40.0%
TCTCACCAGATTTAGATCCA+AGG - Chr8:52885645-52885664 None:intergenic 40.0%
TGTACCCTTGGATCTAAATC+TGG + Chr8:52885637-52885656 MsG0880045023.01.T01:CDS 40.0%
TGTATACTCGGCTTAGTGAT+TGG + Chr8:52886285-52886304 MsG0880045023.01.T01:CDS 40.0%
TGTGAATAGGAAAGTTACCG+TGG - Chr8:52883995-52884014 None:intergenic 40.0%
TGTGGGTATAGAACATCATC+TGG - Chr8:52885294-52885313 None:intergenic 40.0%
TGTTGCTGATAGGTTTAACC+AGG + Chr8:52884469-52884488 MsG0880045023.01.T01:CDS 40.0%
TTGATGTGGGATCAGCATAA+AGG - Chr8:52884840-52884859 None:intergenic 40.0%
TTTACTAATTCGCGAAAGGG+AGG + Chr8:52885099-52885118 MsG0880045023.01.T01:intron 40.0%
TTTAGGTCTGATCCTAACAC+TGG - Chr8:52886791-52886810 None:intergenic 40.0%
! AAGCATTGCCAAACCAATCT+GGG + Chr8:52886457-52886476 MsG0880045023.01.T01:CDS 40.0%
! AGCGTCCCTTTTGTCTATTT+TGG + Chr8:52885427-52885446 MsG0880045023.01.T01:intron 40.0%
! ATAGTGTGGTCGTATTGATG+TGG - Chr8:52884854-52884873 None:intergenic 40.0%
! GACAAAGATGCATTTTGTGC+TGG - Chr8:52885517-52885536 None:intergenic 40.0%
! GGATATGAAGATGGTGATGT+GGG + Chr8:52884389-52884408 MsG0880045023.01.T01:CDS 40.0%
! GTTGTTGGTGAATGGAGTAA+GGG - Chr8:52884157-52884176 None:intergenic 40.0%
! TAGTGTGGTCGTATTGATGT+GGG - Chr8:52884853-52884872 None:intergenic 40.0%
! TGCTGTTTGTAGAATCAAGG+AGG - Chr8:52884199-52884218 None:intergenic 40.0%
! TGGATATGAAGATGGTGATG+TGG + Chr8:52884388-52884407 MsG0880045023.01.T01:CDS 40.0%
! TTAGACACTCGGTTAACTTG+GGG + Chr8:52885344-52885363 MsG0880045023.01.T01:intron 40.0%
!! ACACCTAATGGATTCAACCA+AGG + Chr8:52886741-52886760 MsG0880045023.01.T01:CDS 40.0%
!! AGGGATAAGTTTCTAGCTCT+CGG - Chr8:52885255-52885274 None:intergenic 40.0%
!! TCTGTTAACTTGTACCAGGA+GGG + Chr8:52884787-52884806 MsG0880045023.01.T01:intron 40.0%
!! TTCTGTTAACTTGTACCAGG+AGG + Chr8:52884786-52884805 MsG0880045023.01.T01:intron 40.0%
AAAGACACAGACTCCAAGTG+CGG - Chr8:52886634-52886653 None:intergenic 45.0%
ACCAAGGAAGCCTTAAACCA+AGG + Chr8:52886757-52886776 MsG0880045023.01.T01:CDS 45.0%
AGAAGAAGGTGAAAAGGAGG+AGG - Chr8:52883968-52883987 None:intergenic 45.0%
AGCATTGCCAAACCAATCTG+GGG + Chr8:52886458-52886477 MsG0880045023.01.T01:CDS 45.0%
AGGATGAGATCGGAGGAAAT+GGG - Chr8:52884179-52884198 None:intergenic 45.0%
ATGTCGCGGTGAAATGGTAA+CGG - Chr8:52886435-52886454 None:intergenic 45.0%
CATGAGGGATGATATAAGGG+CGG - Chr8:52886320-52886339 None:intergenic 45.0%
GAGAGAAGAAGGTGAAAAGG+AGG - Chr8:52883971-52883990 None:intergenic 45.0%
GGAAGCCTTAAACCAAGGAA+AGG + Chr8:52886762-52886781 MsG0880045023.01.T01:CDS 45.0%
GGAGAGAGAAGAAGGTGAAA+AGG - Chr8:52883974-52883993 None:intergenic 45.0%
GGGTATAGAACATCATCTGG+TGG - Chr8:52885291-52885310 None:intergenic 45.0%
TCACGATCGCAATGAGACTT+TGG + Chr8:52886548-52886567 MsG0880045023.01.T01:CDS 45.0%
TGAAGATCCTCCAGCAATTG+TGG - Chr8:52885470-52885489 None:intergenic 45.0%
TGACACCAGTAAAGCACACA+GGG - Chr8:52885569-52885588 None:intergenic 45.0%
TTCACCTTCTTCTCTCTCCA+CGG + Chr8:52883975-52883994 MsG0880045023.01.T01:CDS 45.0%
! AGCAACTGCGTTTTTGATGC+CGG - Chr8:52886506-52886525 None:intergenic 45.0%
! ATGGTGATGTGGGTTTAGCT+AGG + Chr8:52884399-52884418 MsG0880045023.01.T01:CDS 45.0%
! ATTGCGCATGGACTACCTAT+TGG - Chr8:52884923-52884942 None:intergenic 45.0%
! CAGTTATGGCTTGGACTCTA+GGG + Chr8:52886250-52886269 MsG0880045023.01.T01:CDS 45.0%
! CTAGGTGTTACCACAATTGC+TGG + Chr8:52885457-52885476 MsG0880045023.01.T01:intron 45.0%
! GCGAAAGGGAGGCAATATTT+TGG + Chr8:52885110-52885129 MsG0880045023.01.T01:intron 45.0%
! GGTGATGGTGTAACCTTCTT+CGG - Chr8:52884102-52884121 None:intergenic 45.0%
! GGTTGTTGGTGAATGGAGTA+AGG - Chr8:52884158-52884177 None:intergenic 45.0%
! GTGATGGTGTAACCTTCTTC+GGG - Chr8:52884101-52884120 None:intergenic 45.0%
! TCCTTGGTTTAAGGCTTCCT+TGG - Chr8:52886761-52886780 None:intergenic 45.0%
!! GAAGCATTGCCAAACCAATC+TGG + Chr8:52886456-52886475 MsG0880045023.01.T01:CDS 45.0%
!! GGAAATGGGTTGTTGGTGAA+TGG - Chr8:52884165-52884184 None:intergenic 45.0%
!! TTTTCTGGAAATGGGTCACC+TGG + Chr8:52884368-52884387 MsG0880045023.01.T01:CDS 45.0%
!!! TCTATAAATTTTTTTTTTTT+GGG + Chr8:52884287-52884306 MsG0880045023.01.T01:intron 5.0%
!!! TTCTATAAATTTTTTTTTTT+TGG + Chr8:52884286-52884305 MsG0880045023.01.T01:intron 5.0%
AAAAGGAGGAGGAGATGGAG+TGG - Chr8:52883957-52883976 None:intergenic 50.0%
AAGCTTGTGACCGTCGAGTA+TGG - Chr8:52884126-52884145 None:intergenic 50.0%
AAGGAGGAGGATTGTACCCT+TGG + Chr8:52885625-52885644 MsG0880045023.01.T01:CDS 50.0%
ACCAGTAAAGCACACAGGGT+AGG - Chr8:52885565-52885584 None:intergenic 50.0%
ACCATCACCACCATACTCGA+CGG + Chr8:52884113-52884132 MsG0880045023.01.T01:CDS 50.0%
AGGTGAAAAGGAGGAGGAGA+TGG - Chr8:52883962-52883981 None:intergenic 50.0%
ATCAAGGAGGATGAGATCGG+AGG - Chr8:52884186-52884205 None:intergenic 50.0%
CATTGCGATCGTGAAAACCG+AGG - Chr8:52886542-52886561 None:intergenic 50.0%
CTATGACGCGACACGTAAAC+CGG - Chr8:52885036-52885055 None:intergenic 50.0%
CTGACACCAGTAAAGCACAC+AGG - Chr8:52885570-52885589 None:intergenic 50.0%
GAAGGTGGAAGGAGAAGACA+TGG - Chr8:52883931-52883950 None:intergenic 50.0%
GAGGATGAGATCGGAGGAAA+TGG - Chr8:52884180-52884199 None:intergenic 50.0%
GGCACCCTTTCCTTGGTTTA+AGG - Chr8:52886770-52886789 None:intergenic 50.0%
GGGTCACCTGGATATGAAGA+TGG + Chr8:52884380-52884399 MsG0880045023.01.T01:CDS 50.0%
GTCAGATCATCAGCACCAGT+TGG + Chr8:52885585-52885604 MsG0880045023.01.T01:CDS 50.0%
GTTACCATTTCACCGCGACA+TGG + Chr8:52886434-52886453 MsG0880045023.01.T01:CDS 50.0%
GTTACCGTGGAGAGAGAAGA+AGG - Chr8:52883982-52884001 None:intergenic 50.0%
TAACACTGGCACCCTTTCCT+TGG - Chr8:52886777-52886796 None:intergenic 50.0%
TCCTACCCTGTGTGCTTTAC+TGG + Chr8:52885561-52885580 MsG0880045023.01.T01:CDS 50.0%
TGGTGGGAGACATACCACAA+GGG - Chr8:52885274-52885293 None:intergenic 50.0%
TTGATGCCGGAGTAGAGTGT+CGG - Chr8:52886493-52886512 None:intergenic 50.0%
TTGGCAATGCTTCCATGTCG+CGG - Chr8:52886449-52886468 None:intergenic 50.0%
! CTAGCTTCCCCAGATTGGTT+TGG - Chr8:52886468-52886487 None:intergenic 50.0%
! GAGAGAAAGGGGGTGTGAAT+AGG - Chr8:52884008-52884027 None:intergenic 50.0%
! GCAGTTATGGCTTGGACTCT+AGG + Chr8:52886249-52886268 MsG0880045023.01.T01:CDS 50.0%
! GGTGTTACCACAATTGCTGG+AGG + Chr8:52885460-52885479 MsG0880045023.01.T01:intron 50.0%
!! AACAGGGCTTGGTGCAGTTA+TGG + Chr8:52886236-52886255 MsG0880045023.01.T01:intron 50.0%
!! AAGGAAAGGGTGCCAGTGTT+AGG + Chr8:52886776-52886795 MsG0880045023.01.T01:CDS 50.0%
!! CTAGTACCGACACTCTACTC+CGG + Chr8:52886484-52886503 MsG0880045023.01.T01:CDS 50.0%
!! GATCGGAGGAAATGGGTTGT+TGG - Chr8:52884172-52884191 None:intergenic 50.0%
!! TTTCTAGCTCTCGGTGACAC+TGG - Chr8:52885246-52885265 None:intergenic 50.0%
AAGCTCGTCGTTCCCGAAGA+AGG + Chr8:52884086-52884105 MsG0880045023.01.T01:CDS 55.0%
CTGGTGGGAGACATACCACA+AGG - Chr8:52885275-52885294 None:intergenic 55.0%
CTTGTGACCGTCGAGTATGG+TGG - Chr8:52884123-52884142 None:intergenic 55.0%
GAGATGGAGTGGAAGGAAGG+TGG - Chr8:52883946-52883965 None:intergenic 55.0%
GAGGAGATGGAGTGGAAGGA+AGG - Chr8:52883949-52883968 None:intergenic 55.0%
GCTTCCATGTCGCGGTGAAA+TGG - Chr8:52886441-52886460 None:intergenic 55.0%
TGCTAGCTGCAGTTGCTCCT+CGG + Chr8:52886522-52886541 MsG0880045023.01.T01:CDS 55.0%
TGGAGTGGAAGGAAGGTGGA+AGG - Chr8:52883942-52883961 None:intergenic 55.0%
! ACCGTCGAGTATGGTGGTGA+TGG - Chr8:52884117-52884136 None:intergenic 55.0%
! CGGTACTAGCTTCCCCAGAT+TGG - Chr8:52886473-52886492 None:intergenic 55.0%
! GACACTCGGTTAACTTGGGG+TGG + Chr8:52885347-52885366 MsG0880045023.01.T01:intron 55.0%
!! GGCTTGGTGCAGTTATGGCT+TGG + Chr8:52886241-52886260 MsG0880045023.01.T01:CDS 55.0%
CGTCATGCTATCGTCCCTCC+TGG - Chr8:52884804-52884823 None:intergenic 60.0%
GGAGGAGGAGATGGAGTGGA+AGG - Chr8:52883953-52883972 None:intergenic 60.0%
TTCTCCAAGGCGACCGCACT+TGG + Chr8:52886618-52886637 MsG0880045023.01.T01:CDS 60.0%
!! CGCGGTGAAATGGTAACGGC+TGG - Chr8:52886431-52886450 None:intergenic 60.0%
GACTCCAAGTGCGGTCGCCT+TGG - Chr8:52886625-52886644 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 52883864 52886873 52883864 ID=MsG0880045023.01;Name=MsG0880045023.01
Chr8 mRNA 52883864 52886873 52883864 ID=MsG0880045023.01.T01;Parent=MsG0880045023.01;Name=MsG0880045023.01.T01;_AED=0.37;_eAED=0.37;_QI=66|0.8|0.83|1|1|1|6|0|384
Chr8 exon 52886421 52886873 52886421 ID=MsG0880045023.01.T01:exon:32225;Parent=MsG0880045023.01.T01
Chr8 exon 52886241 52886338 52886241 ID=MsG0880045023.01.T01:exon:32224;Parent=MsG0880045023.01.T01
Chr8 exon 52885461 52885658 52885461 ID=MsG0880045023.01.T01:exon:32223;Parent=MsG0880045023.01.T01
Chr8 exon 52884351 52884515 52884351 ID=MsG0880045023.01.T01:exon:32222;Parent=MsG0880045023.01.T01
Chr8 exon 52884078 52884251 52884078 ID=MsG0880045023.01.T01:exon:32221;Parent=MsG0880045023.01.T01
Chr8 exon 52883864 52883996 52883864 ID=MsG0880045023.01.T01:exon:32220;Parent=MsG0880045023.01.T01
Chr8 five_prime_UTR 52883864 52883929 52883864 ID=MsG0880045023.01.T01:five_prime_utr;Parent=MsG0880045023.01.T01
Chr8 CDS 52883930 52883996 52883930 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Chr8 CDS 52884078 52884251 52884078 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Chr8 CDS 52884351 52884515 52884351 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Chr8 CDS 52885461 52885658 52885461 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Chr8 CDS 52886241 52886338 52886241 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Chr8 CDS 52886421 52886873 52886421 ID=MsG0880045023.01.T01:cds;Parent=MsG0880045023.01.T01
Gene Sequence

>MsG0880045023.01.T01

ATGTCTTCTCCTTCCACCTTCCTTCCACTCCATCTCCTCCTCCTTTTCACCTTCTTCTCTCTCCACGTTCAAGCAAAGCTCGTCGTTCCCGAAGAAGGTTACACCATCACCACCATACTCGACGGTCACAAGCTTCACATAAACCCTTACTCCATTCACCAACAACCCATTTCCTCCGATCTCATCCTCCTTGATTCTACAAACAGCACTTTCTACACCGTCCAATTACCAATTTCCCAAGAAAGTGTTTTCAAGAGGTTTTCTGGAAATGGGTCACCTGGATATGAAGATGGTGATGTGGGTTTAGCTAGGTTTAATAAACCTAGAAGCTTTGCTGTTGATTTTAGAGGGAATGTTTATGTTGCTGATAGGTTTAACCAGGTGATAAGGAAAATCAGTACTAATGGTGTTACCACAATTGCTGGAGGATCTTCAGAAAAGTCAAGCATCAAGGATGGACCAGCACAAAATGCATCTTTGTCAAATGATTTCGAGCTAACTTTCATTCCTACCCTGTGTGCTTTACTGGTGTCAGATCATCAGCACCAGTTGGTCCATCAGATTAATTTGAAGGAGGAGGATTGTACCCTTGGATCTAAATCTGGGCTTGGTGCAGTTATGGCTTGGACTCTAGGGTTATTACTATCATGTATACTCGGCTTAGTGATTGGCATTGTGATCCGCCCTTATATCATCCCTCATGAACACACCAGCCGTTACCATTTCACCGCGACATGGAAGCATTGCCAAACCAATCTGGGGAAGCTAGTACCGACACTCTACTCCGGCATCAAAAACGCAGTTGCTAGCTGCAGTTGCTCCTCGGTTTTCACGATCGCAATGAGACTTTGGAAATTGAGTCTTTCTCTTCTTGTTCTTGTGTTTAATATTGACTTCGTTTCTCCAAGGCGACCGCACTTGGAGTCTGTGTCTTTGCTAGATTTAGATGCTTACAATAGTGGTGAGATATCAAAGTCAAGTAAGTATTTTGACCAATTGAAGGATTTGATGAGTTTTGATGAACACCTAATGGATTCAACCAAGGAAGCCTTAAACCAAGGAAAGGGTGCCAGTGTTAGGATCAGACCTAAAGATAGTAACATTCTTCATCAAGAATCATCTGTTTCTAATTTGGGAATTGTGAAGAGGAGATGA
Protein sequence

>MsG0880045023.01.T01

MSSPSTFLPLHLLLLFTFFSLHVQAKLVVPEEGYTITTILDGHKLHINPYSIHQQPISSDLILLDSTNSTFYTVQLPISQESVFKRFSGNGSPGYEDGDVGLARFNKPRSFAVDFRGNVYVADRFNQVIRKISTNGVTTIAGGSSEKSSIKDGPAQNASLSNDFELTFIPTLCALLVSDHQHQLVHQINLKEEDCTLGSKSGLGAVMAWTLGLLLSCILGLVIGIVIRPYIIPHEHTSRYHFTATWKHCQTNLGKLVPTLYSGIKNAVASCSCSSVFTIAMRLWKLSLSLLVLVFNIDFVSPRRPHLESVSLLDLDAYNSGEISKSSKYFDQLKDLMSFDEHLMDSTKEALNQGKGASVRIRPKDSNILHQESSVSNLGIVKRR*