AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045160.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045160.01.T01 MTR_4g125810 90.717 237 22 0 1 237 28 264 5.99e-153 439
MsG0880045160.01.T01 MTR_2g040500 44.061 261 92 11 1 227 28 268 7.14e-47 166
MsG0880045160.01.T01 MTR_3g104710 42.105 95 43 3 129 221 183 267 5.82e-14 72.8
MsG0880045160.01.T01 MTR_1g015110 37.864 103 56 3 129 227 193 291 1.28e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045160.01.T01 AT1G17550 40.541 74 42 1 156 227 165 238 2.41e-11 65.1
MsG0880045160.01.T01 AT1G17550 40.541 74 42 1 156 227 165 238 2.41e-11 65.1

Find 121 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGATTCAATTGCTGATTT+TGG 0.121465 8:+55047868 None:intergenic
TGATGGGCATGGAGGCTTTC+AGG 0.175528 8:-55048218 MsG0880045160.01.T01:intron
AATAAAAGGCTTAAGGAAAA+AGG 0.199354 8:-55049087 MsG0880045160.01.T01:five_prime_UTR
ATCAAATTTCCAAGTGTAAA+TGG 0.209870 8:+55048957 None:intergenic
CCAAGATTGAAATAACTATT+TGG 0.219652 8:+55047844 None:intergenic
TGAAATTTGATGCTGAATTT+TGG 0.229348 8:-55047767 MsG0880045160.01.T01:CDS
ACCATATATCATAGAATAAA+AGG 0.234400 8:-55049101 MsG0880045160.01.T01:five_prime_UTR
AGACTTAGGTTATTGCTAAA+AGG 0.251804 8:-55049022 MsG0880045160.01.T01:five_prime_UTR
CCAAATAGTTATTTCAATCT+TGG 0.270542 8:-55047844 MsG0880045160.01.T01:CDS
ATAATTCTAAGACTCCTTTA+TGG 0.282239 8:+55047661 None:intergenic
TGATTGAATGTGGGAGTAAT+TGG 0.283028 8:-55048740 MsG0880045160.01.T01:CDS
TTTCAGTGCCTGCATAATTC+AGG 0.301475 8:-55048657 MsG0880045160.01.T01:CDS
TACTCAATTCCAAACCATTC+TGG 0.307215 8:+55048403 None:intergenic
GAATTATCCATGGTCTTGTT+TGG 0.310591 8:-55047645 MsG0880045160.01.T01:CDS
CACTCTGCCTCTCACATAAC+CGG 0.311747 8:-55049557 MsG0880045160.01.T01:five_prime_UTR
AATTGAGTAGTGGCCCTCTA+TGG 0.315879 8:-55048389 MsG0880045160.01.T01:CDS
CGTCCTTTATAGCCTGGTTA+TGG 0.318628 8:+55048703 None:intergenic
CATAACCGGGTTGAAGCTTA+TGG 0.337760 8:-55049543 MsG0880045160.01.T01:five_prime_UTR
AGAAGAATAGCAGATAGTTT+TGG 0.339478 8:+55048468 None:intergenic
ACAACTCATATGGAGATAAC+AGG 0.368474 8:-55048915 MsG0880045160.01.T01:exon
CAGAGTGAGAGGGAGAAGAA+AGG 0.375249 8:+55049573 None:intergenic
GTTAAAGACTAGAAGCTCAT+AGG 0.376386 8:-55049052 MsG0880045160.01.T01:five_prime_UTR
CACGGTATCCGCGGAGGTAA+AGG 0.384992 8:-55048799 MsG0880045160.01.T01:CDS
GATAACAGGGTTGAAGCTTA+TGG 0.399594 8:-55048901 MsG0880045160.01.T01:CDS
ATTGAGTAGTGGCCCTCTAT+GGG 0.404588 8:-55048388 MsG0880045160.01.T01:CDS
AGAGTGAGAGGGAGAAGAAA+GGG 0.404714 8:+55049574 None:intergenic
ATCATAGAATAAAAGGCTTA+AGG 0.405599 8:-55049094 MsG0880045160.01.T01:five_prime_UTR
TAGCATAAACGAGGTACTTC+CGG 0.411406 8:-55048571 MsG0880045160.01.T01:CDS
ACTTGGAAATTTGATTCAAA+AGG 0.416275 8:-55048949 MsG0880045160.01.T01:five_prime_UTR
AAAATACCCATGCCACATAA+GGG 0.419152 8:+55049658 None:intergenic
AAGCCATAACCAGGCTATAA+AGG 0.423467 8:-55048706 MsG0880045160.01.T01:CDS
TTGATATTAAATCCTGCAGT+TGG 0.427928 8:-55048861 MsG0880045160.01.T01:CDS
AGATTCACCAATCATCGTTA+AGG 0.450055 8:-55048619 MsG0880045160.01.T01:CDS
TAACAGTAGCAATTGTAGAA+TGG 0.452845 8:+55047793 None:intergenic
TATCCATGGTCTTGTTTGGA+TGG 0.452929 8:-55047641 MsG0880045160.01.T01:CDS
TGCTGCTGTTACAACTCATA+TGG 0.453647 8:-55048925 MsG0880045160.01.T01:exon
AACAAGCAACCAGAATGGTT+TGG 0.455011 8:-55048412 MsG0880045160.01.T01:CDS
ACTAAAGGCCGAGCAGAATA+CGG 0.456705 8:-55048547 MsG0880045160.01.T01:CDS
TCACCAACCTTAACGATGAT+TGG 0.459136 8:+55048612 None:intergenic
AGTCCCTTCACAGATGCTAA+TGG 0.459379 8:-55048295 MsG0880045160.01.T01:CDS
TTCTGCTCGGCCTTTAGTAC+CGG 0.464524 8:+55048552 None:intergenic
ATTATTATTATTATCTTGAA+AGG 0.464606 8:+55049416 None:intergenic
AAGGTTGGTGATGAGATTCA+TGG 0.470185 8:-55048600 MsG0880045160.01.T01:CDS
CATGCCACATAAGGGGTGTA+TGG 0.473033 8:+55049666 None:intergenic
TGTGGATGAAGGATACTTCA+AGG 0.488289 8:-55047706 MsG0880045160.01.T01:CDS
CATATCTAGTTTCTTTGTTG+AGG 0.489301 8:-55049488 MsG0880045160.01.T01:five_prime_UTR
GAGATCTAAGAGAGAGAAGA+GGG 0.490981 8:+55049596 None:intergenic
TTTGAATCTAGAGACCATAA+AGG 0.492853 8:-55047675 MsG0880045160.01.T01:CDS
ATTGAAATAACTATTTGGAT+AGG 0.493134 8:+55047849 None:intergenic
TCATAGGGTACTAGAGACTT+AGG 0.493302 8:-55049036 MsG0880045160.01.T01:five_prime_UTR
CTTGAAGATATTTCTTCCAA+TGG 0.498558 8:+55048990 None:intergenic
CGAGGTACTTCCGGTACTAA+AGG 0.498740 8:-55048562 MsG0880045160.01.T01:CDS
TCTCATCGTCCTTTATAGCC+TGG 0.499525 8:+55048697 None:intergenic
CTGTGGAAATAGACCGGAGA+TGG 0.511631 8:-55048352 MsG0880045160.01.T01:CDS
AGTTGGTGCGGCCGTTGTCT+CGG 0.516995 8:-55048769 MsG0880045160.01.T01:CDS
TAAAAGGCAAAGTTAACCAT+TGG 0.528073 8:-55049006 MsG0880045160.01.T01:five_prime_UTR
ATCAATCTGTGGAAATAGAC+CGG 0.533852 8:-55048358 MsG0880045160.01.T01:CDS
CTGAATTTAAATGTGGATGA+AGG 0.533904 8:-55047717 MsG0880045160.01.T01:CDS
AGATTCATCACACCTGGTGG+AGG 0.535686 8:+55047738 None:intergenic
GCAACAACATCTTCCATCTC+CGG 0.542671 8:+55048339 None:intergenic
GGAGATCTAAGAGAGAGAAG+AGG 0.543617 8:+55049595 None:intergenic
TTAAAGACTAGAAGCTCATA+GGG 0.545247 8:-55049051 MsG0880045160.01.T01:five_prime_UTR
ATGTGAGAGGCAGAGTGAGA+GGG 0.545339 8:+55049563 None:intergenic
CATACACCCCTTATGTGGCA+TGG 0.546542 8:-55049665 MsG0880045160.01.T01:five_prime_UTR
TTTGGTGTCTATGATGGGCA+TGG 0.549083 8:-55048229 MsG0880045160.01.T01:CDS
TGGAAGAGTGGTATGGAGAA+GGG 0.549448 8:+55049686 None:intergenic
AAATTCAGATTCATCACACC+TGG 0.552952 8:+55047732 None:intergenic
TTGAGAACAAGCAACCAGAA+TGG 0.553751 8:-55048417 MsG0880045160.01.T01:CDS
TCTTCCATACACCCCTTATG+TGG 0.557932 8:-55049670 MsG0880045160.01.T01:five_prime_UTR
ATTGAGAGCCTGAATTATGC+AGG 0.559602 8:+55048649 None:intergenic
TCTTCTTGATCAGTTGCCAA+AGG 0.560115 8:-55048451 MsG0880045160.01.T01:CDS
AACAGAATCCGTATTCTGCT+CGG 0.560508 8:+55048539 None:intergenic
TCACCAATCATCGTTAAGGT+TGG 0.561708 8:-55048615 MsG0880045160.01.T01:CDS
TTCATCACACCTGGTGGAGG+GGG 0.561712 8:+55047741 None:intergenic
ATTCATCACACCTGGTGGAG+GGG 0.563592 8:+55047740 None:intergenic
TATGTGAGAGGCAGAGTGAG+AGG 0.568763 8:+55049562 None:intergenic
GGGTGTATGGAAGAGTGGTA+TGG 0.569311 8:+55049679 None:intergenic
ATACACCCCTTATGTGGCAT+GGG 0.571567 8:-55049664 MsG0880045160.01.T01:five_prime_UTR
GATTCATCACACCTGGTGGA+GGG 0.572292 8:+55047739 None:intergenic
GTTGCAGTGCCATTTACACT+TGG 0.572388 8:-55048966 MsG0880045160.01.T01:five_prime_UTR
GAGGTAAAGGAGAATCAAGT+TGG 0.572537 8:-55048786 MsG0880045160.01.T01:CDS
ATGGAAGAGTGGTATGGAGA+AGG 0.576479 8:+55049685 None:intergenic
TTGATGAGAAACCCCATAGA+GGG 0.580491 8:+55048376 None:intergenic
CTGTTGCAATGGATATTGAG+AGG 0.582351 8:-55048521 MsG0880045160.01.T01:CDS
CTTCAACCCGGTTATGTGAG+AGG 0.583252 8:+55049550 None:intergenic
CTTGAGTGAAAGCCATAACC+AGG 0.583606 8:-55048715 MsG0880045160.01.T01:CDS
GAATACGGATTCTGTTGCAA+TGG 0.586777 8:-55048532 MsG0880045160.01.T01:CDS
TGTTGCAATGGATATTGAGA+GGG 0.588381 8:-55048520 MsG0880045160.01.T01:CDS
ATTGATGAGAAACCCCATAG+AGG 0.590904 8:+55048375 None:intergenic
GATGAATCTGAATTTAAATG+TGG 0.598269 8:-55047724 MsG0880045160.01.T01:CDS
TCGGAAATGTTGATTGAATG+TGG 0.599725 8:-55048750 MsG0880045160.01.T01:CDS
CGATGAGATCATGTTAGCTG+TGG 0.601298 8:-55048682 MsG0880045160.01.T01:CDS
TTCAGATTCATCACACCTGG+TGG 0.603617 8:+55047735 None:intergenic
TTGAGTAGTGGCCCTCTATG+GGG 0.609354 8:-55048387 MsG0880045160.01.T01:CDS
TCATCCATTAGCATCTGTGA+AGG 0.613517 8:+55048291 None:intergenic
ATAAGGGGTGTATGGAAGAG+TGG 0.614419 8:+55049674 None:intergenic
ATAATAATAATAATCAACTC+AGG 0.614565 8:-55049398 MsG0880045160.01.T01:intron
CAACCATCCAAACAAGACCA+TGG 0.618245 8:+55047638 None:intergenic
AAATCGAAGTGTGTCAGAAG+AGG 0.618757 8:-55048496 MsG0880045160.01.T01:CDS
TGGGGTTTCTCATCAATCTG+TGG 0.622774 8:-55048369 MsG0880045160.01.T01:CDS
CATCCATTAGCATCTGTGAA+GGG 0.623872 8:+55048292 None:intergenic
TAATTCAGGCTCTCAATCTG+TGG 0.624297 8:-55048643 MsG0880045160.01.T01:CDS
AAATACCCATGCCACATAAG+GGG 0.631006 8:+55049659 None:intergenic
CAACTCATATGGAGATAACA+GGG 0.633429 8:-55048914 MsG0880045160.01.T01:exon
AATCAACATTTCCGAGACAA+CGG 0.634725 8:+55048758 None:intergenic
AATGGTTTGGAATTGAGTAG+TGG 0.634780 8:-55048399 MsG0880045160.01.T01:CDS
CGGAAATGTTGATTGAATGT+GGG 0.636981 8:-55048749 MsG0880045160.01.T01:CDS
GCAGGTGAATGAATGAATGA+AGG 0.638193 8:+55049454 None:intergenic
AGGAGTCTTAGAATTATCCA+TGG 0.638352 8:-55047655 MsG0880045160.01.T01:CDS
ACTCTGCCTCTCACATAACC+GGG 0.642036 8:-55049556 MsG0880045160.01.T01:five_prime_UTR
GTTGAAGACTAACATCAGCA+TGG 0.646810 8:+55048829 None:intergenic
TTGGCAGGTTAGGAACCAGA+TGG 0.647825 8:-55047895 MsG0880045160.01.T01:intron
TCAGATCACGGTATCCGCGG+AGG 0.649352 8:-55048805 MsG0880045160.01.T01:CDS
ATTTGCCATAAGCTTCAACC+CGG 0.650598 8:+55049538 None:intergenic
ACATCAGATCACGGTATCCG+CGG 0.656186 8:-55048808 MsG0880045160.01.T01:CDS
AAAGGAGAATCAAGTTGGTG+CGG 0.659401 8:-55048781 MsG0880045160.01.T01:CDS
TAGTCTTCAACATCAGATCA+CGG 0.669945 8:-55048817 MsG0880045160.01.T01:CDS
TTGATTCTCCTTTACCTCCG+CGG 0.675182 8:+55048791 None:intergenic
GGTGTCTATGATGGGCATGG+AGG 0.675725 8:-55048226 MsG0880045160.01.T01:CDS
TGGTAAGTTTAGCATAAACG+AGG 0.709809 8:-55048580 MsG0880045160.01.T01:CDS
GGTGAATGAATGAATGAAGG+AGG 0.717263 8:+55049457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATCTTGAA+AGG + Chr8:55047915-55047934 None:intergenic 10.0%
!! ATAATAATAATAATCAACTC+AGG - Chr8:55047930-55047949 MsG0880045160.01.T01:intron 15.0%
!! CATAATATTATTTGTATTGT+AGG - Chr8:55048058-55048077 MsG0880045160.01.T01:intron 15.0%
!! ACCATATATCATAGAATAAA+AGG - Chr8:55048227-55048246 MsG0880045160.01.T01:CDS 20.0%
!! ATTGAAATAACTATTTGGAT+AGG + Chr8:55049482-55049501 None:intergenic 20.0%
!! CAAATTGTATGATTTGATTA+AGG + Chr8:55049142-55049161 None:intergenic 20.0%
!! TCTATAAATTAAAGAGTGAA+AGG + Chr8:55047977-55047996 None:intergenic 20.0%
!!! ATACAAAAAATTGAGTTGAT+AGG + Chr8:55049398-55049417 None:intergenic 20.0%
!!! ATTTTGTGTTTTCATTCAAA+TGG + Chr8:55049063-55049082 None:intergenic 20.0%
! AATAAAAGGCTTAAGGAAAA+AGG - Chr8:55048241-55048260 MsG0880045160.01.T01:CDS 25.0%
! ACTTGGAAATTTGATTCAAA+AGG - Chr8:55048379-55048398 MsG0880045160.01.T01:CDS 25.0%
! ATAAAAGGCTTAAGGAAAAA+GGG - Chr8:55048242-55048261 MsG0880045160.01.T01:CDS 25.0%
! ATAACAAATCTTGACAAAGA+AGG - Chr8:55048022-55048041 MsG0880045160.01.T01:intron 25.0%
! ATCAAATTTCCAAGTGTAAA+TGG + Chr8:55048374-55048393 None:intergenic 25.0%
! ATCATAGAATAAAAGGCTTA+AGG - Chr8:55048234-55048253 MsG0880045160.01.T01:CDS 25.0%
! CCAAGATTGAAATAACTATT+TGG + Chr8:55049487-55049506 None:intergenic 25.0%
! GATGAATCTGAATTTAAATG+TGG - Chr8:55049604-55049623 MsG0880045160.01.T01:five_prime_UTR 25.0%
!! CCAAATAGTTATTTCAATCT+TGG - Chr8:55049484-55049503 MsG0880045160.01.T01:five_prime_UTR 25.0%
!! GCCTTTTATTCTATGATATA+TGG + Chr8:55048231-55048250 None:intergenic 25.0%
!! TGAAATTTGATGCTGAATTT+TGG - Chr8:55049561-55049580 MsG0880045160.01.T01:five_prime_UTR 25.0%
!!! ACACTTATTTGACTTTTAAG+AGG - Chr8:55048140-55048159 MsG0880045160.01.T01:intron 25.0%
!!! ATAATTCTAAGACTCCTTTA+TGG + Chr8:55049670-55049689 None:intergenic 25.0%
!!! CAATTTTTTGTATCACTTTC+TGG - Chr8:55049405-55049424 MsG0880045160.01.T01:five_prime_UTR 25.0%
!!! TTTGATTTTGATGTACAAAG+AGG - Chr8:55048092-55048111 MsG0880045160.01.T01:intron 25.0%
AAACATCAAGAATTCTCCTA+CGG + Chr8:55048193-55048212 None:intergenic 30.0%
AGACTTAGGTTATTGCTAAA+AGG - Chr8:55048306-55048325 MsG0880045160.01.T01:CDS 30.0%
ATGAACCATTTACACATCTA+TGG + Chr8:55049314-55049333 None:intergenic 30.0%
CATCATAGACACCAAAAAAT+GGG + Chr8:55049095-55049114 None:intergenic 30.0%
CTGAATTTAAATGTGGATGA+AGG - Chr8:55049611-55049630 MsG0880045160.01.T01:five_prime_UTR 30.0%
CTTGAAGATATTTCTTCCAA+TGG + Chr8:55048341-55048360 None:intergenic 30.0%
TAAAAGGCAAAGTTAACCAT+TGG - Chr8:55048322-55048341 MsG0880045160.01.T01:CDS 30.0%
TAAAGCCATAGATGTGTAAA+TGG - Chr8:55049306-55049325 MsG0880045160.01.T01:intron 30.0%
TAACAGTAGCAATTGTAGAA+TGG + Chr8:55049538-55049557 None:intergenic 30.0%
TTAAAGACTAGAAGCTCATA+GGG - Chr8:55048277-55048296 MsG0880045160.01.T01:CDS 30.0%
TTGATATTAAATCCTGCAGT+TGG - Chr8:55048467-55048486 MsG0880045160.01.T01:CDS 30.0%
TTTGAATCTAGAGACCATAA+AGG - Chr8:55049653-55049672 MsG0880045160.01.T01:five_prime_UTR 30.0%
! AGAAGAATAGCAGATAGTTT+TGG + Chr8:55048863-55048882 None:intergenic 30.0%
! CATATCTAGTTTCTTTGTTG+AGG - Chr8:55047840-55047859 MsG0880045160.01.T01:CDS 30.0%
! TGTGTAAATGGTTCATTTTC+AGG - Chr8:55049318-55049337 MsG0880045160.01.T01:intron 30.0%
!!! CATTTTTTGGTGTCTATGAT+GGG - Chr8:55049094-55049113 MsG0880045160.01.T01:five_prime_UTR 30.0%
!!! TAGGATTCAATTGCTGATTT+TGG + Chr8:55049463-55049482 None:intergenic 30.0%
AAAAATACCCATGCCACATA+AGG + Chr8:55047674-55047693 None:intergenic 35.0%
AAAATACCCATGCCACATAA+GGG + Chr8:55047673-55047692 None:intergenic 35.0%
AAATTCAGATTCATCACACC+TGG + Chr8:55049599-55049618 None:intergenic 35.0%
AATCAACATTTCCGAGACAA+CGG + Chr8:55048573-55048592 None:intergenic 35.0%
ACAACTCATATGGAGATAAC+AGG - Chr8:55048413-55048432 MsG0880045160.01.T01:CDS 35.0%
AGATTCACCAATCATCGTTA+AGG - Chr8:55048709-55048728 MsG0880045160.01.T01:CDS 35.0%
AGGAAAAAGGGAGAAAAAAG+TGG - Chr8:55048254-55048273 MsG0880045160.01.T01:CDS 35.0%
AGGAGTCTTAGAATTATCCA+TGG - Chr8:55049673-55049692 MsG0880045160.01.T01:five_prime_UTR 35.0%
AGGATGAAAAAAAACAGTGC+AGG + Chr8:55047895-55047914 None:intergenic 35.0%
ATCAATCTGTGGAAATAGAC+CGG - Chr8:55048970-55048989 MsG0880045160.01.T01:five_prime_UTR 35.0%
CAACTCATATGGAGATAACA+GGG - Chr8:55048414-55048433 MsG0880045160.01.T01:CDS 35.0%
CCATCATAGACACCAAAAAA+TGG + Chr8:55049096-55049115 None:intergenic 35.0%
GGCAAGAAATTAAAGGGTTT+AGG + Chr8:55048172-55048191 None:intergenic 35.0%
GTTAAAGACTAGAAGCTCAT+AGG - Chr8:55048276-55048295 MsG0880045160.01.T01:CDS 35.0%
TACTCAATTCCAAACCATTC+TGG + Chr8:55048928-55048947 None:intergenic 35.0%
TAGTCTTCAACATCAGATCA+CGG - Chr8:55048511-55048530 MsG0880045160.01.T01:CDS 35.0%
TCCTACGGCAAGAAATTAAA+GGG + Chr8:55048178-55048197 None:intergenic 35.0%
TGATTGAATGTGGGAGTAAT+TGG - Chr8:55048588-55048607 MsG0880045160.01.T01:CDS 35.0%
TGGTAAGTTTAGCATAAACG+AGG - Chr8:55048748-55048767 MsG0880045160.01.T01:CDS 35.0%
TGTTGCAATGGATATTGAGA+GGG - Chr8:55048808-55048827 MsG0880045160.01.T01:CDS 35.0%
! AATGGTTTGGAATTGAGTAG+TGG - Chr8:55048929-55048948 MsG0880045160.01.T01:five_prime_UTR 35.0%
! CGGAAATGTTGATTGAATGT+GGG - Chr8:55048579-55048598 MsG0880045160.01.T01:CDS 35.0%
! GTATCACTTTCTGGAAGATT+TGG - Chr8:55049414-55049433 MsG0880045160.01.T01:five_prime_UTR 35.0%
! TCGGAAATGTTGATTGAATG+TGG - Chr8:55048578-55048597 MsG0880045160.01.T01:CDS 35.0%
!! CTCAATGTTTTGTTCTCCTT+TGG + Chr8:55048896-55048915 None:intergenic 35.0%
!! GAATTATCCATGGTCTTGTT+TGG - Chr8:55049683-55049702 MsG0880045160.01.T01:five_prime_UTR 35.0%
!! TGAGAGTGTTTGTTTCTGAT+AGG - Chr8:55049188-55049207 MsG0880045160.01.T01:intron 35.0%
!!! ATATCCACAAGCCCATTTTT+TGG - Chr8:55049081-55049100 MsG0880045160.01.T01:five_prime_UTR 35.0%
!!! CCATTTTTTGGTGTCTATGA+TGG - Chr8:55049093-55049112 MsG0880045160.01.T01:five_prime_UTR 35.0%
AAATACCCATGCCACATAAG+GGG + Chr8:55047672-55047691 None:intergenic 40.0%
AAATCGAAGTGTGTCAGAAG+AGG - Chr8:55048832-55048851 MsG0880045160.01.T01:CDS 40.0%
AACAAGCAACCAGAATGGTT+TGG - Chr8:55048916-55048935 MsG0880045160.01.T01:exon 40.0%
AACAGAATCCGTATTCTGCT+CGG + Chr8:55048792-55048811 None:intergenic 40.0%
AAGCCATAACCAGGCTATAA+AGG - Chr8:55048622-55048641 MsG0880045160.01.T01:CDS 40.0%
ATTGAGAGCCTGAATTATGC+AGG + Chr8:55048682-55048701 None:intergenic 40.0%
ATTGATGAGAAACCCCATAG+AGG + Chr8:55048956-55048975 None:intergenic 40.0%
ATTTGCCATAAGCTTCAACC+CGG + Chr8:55047793-55047812 None:intergenic 40.0%
CATCCATTAGCATCTGTGAA+GGG + Chr8:55049039-55049058 None:intergenic 40.0%
CTCCTACGGCAAGAAATTAA+AGG + Chr8:55048179-55048198 None:intergenic 40.0%
CTGTTGCAATGGATATTGAG+AGG - Chr8:55048807-55048826 MsG0880045160.01.T01:CDS 40.0%
GAATACGGATTCTGTTGCAA+TGG - Chr8:55048796-55048815 MsG0880045160.01.T01:CDS 40.0%
GAGATCTAAGAGAGAGAAGA+GGG + Chr8:55047735-55047754 None:intergenic 40.0%
GAGGTAAAGGAGAATCAAGT+TGG - Chr8:55048542-55048561 MsG0880045160.01.T01:CDS 40.0%
GATAACAGGGTTGAAGCTTA+TGG - Chr8:55048427-55048446 MsG0880045160.01.T01:CDS 40.0%
GCAGGTGAATGAATGAATGA+AGG + Chr8:55047877-55047896 None:intergenic 40.0%
GGTGAATGAATGAATGAAGG+AGG + Chr8:55047874-55047893 None:intergenic 40.0%
GTTGAAGACTAACATCAGCA+TGG + Chr8:55048502-55048521 None:intergenic 40.0%
TAATTCAGGCTCTCAATCTG+TGG - Chr8:55048685-55048704 MsG0880045160.01.T01:CDS 40.0%
TCACCAACCTTAACGATGAT+TGG + Chr8:55048719-55048738 None:intergenic 40.0%
TCACCAATCATCGTTAAGGT+TGG - Chr8:55048713-55048732 MsG0880045160.01.T01:CDS 40.0%
TCATCCATTAGCATCTGTGA+AGG + Chr8:55049040-55049059 None:intergenic 40.0%
TCTTCTTGATCAGTTGCCAA+AGG - Chr8:55048877-55048896 MsG0880045160.01.T01:CDS 40.0%
TGCTGCTGTTACAACTCATA+TGG - Chr8:55048403-55048422 MsG0880045160.01.T01:CDS 40.0%
TGTGGATGAAGGATACTTCA+AGG - Chr8:55049622-55049641 MsG0880045160.01.T01:five_prime_UTR 40.0%
TTGAGAACAAGCAACCAGAA+TGG - Chr8:55048911-55048930 MsG0880045160.01.T01:exon 40.0%
TTGATGAGAAACCCCATAGA+GGG + Chr8:55048955-55048974 None:intergenic 40.0%
TTTCAGTGCCTGCATAATTC+AGG - Chr8:55048671-55048690 MsG0880045160.01.T01:CDS 40.0%
! ACCCTTTAATTTCTTGCCGT+AGG - Chr8:55048174-55048193 MsG0880045160.01.T01:intron 40.0%
! TAGCATAAACGAGGTACTTC+CGG - Chr8:55048757-55048776 MsG0880045160.01.T01:CDS 40.0%
! TCATAGGGTACTAGAGACTT+AGG - Chr8:55048292-55048311 MsG0880045160.01.T01:CDS 40.0%
! TGGTTTTCATTTCCAACTGC+AGG + Chr8:55048482-55048501 None:intergenic 40.0%
!! AAAGGAGAATCAAGTTGGTG+CGG - Chr8:55048547-55048566 MsG0880045160.01.T01:CDS 40.0%
!! AAGGTTGGTGATGAGATTCA+TGG - Chr8:55048728-55048747 MsG0880045160.01.T01:CDS 40.0%
!! ACACATCTATGGCTTTAGTC+TGG + Chr8:55049303-55049322 None:intergenic 40.0%
!! CACATCTATGGCTTTAGTCT+GGG + Chr8:55049302-55049321 None:intergenic 40.0%
!! TATCCATGGTCTTGTTTGGA+TGG - Chr8:55049687-55049706 MsG0880045160.01.T01:five_prime_UTR 40.0%
AATTGAGTAGTGGCCCTCTA+TGG - Chr8:55048939-55048958 MsG0880045160.01.T01:five_prime_UTR 45.0%
ACTAAAGGCCGAGCAGAATA+CGG - Chr8:55048781-55048800 MsG0880045160.01.T01:CDS 45.0%
AGAGTGAGAGGGAGAAGAAA+GGG + Chr8:55047757-55047776 None:intergenic 45.0%
AGTCCCTTCACAGATGCTAA+TGG - Chr8:55049033-55049052 MsG0880045160.01.T01:five_prime_UTR 45.0%
ATACACCCCTTATGTGGCAT+GGG - Chr8:55047664-55047683 MsG0880045160.01.T01:CDS 45.0%
ATGGAAGAGTGGTATGGAGA+AGG + Chr8:55047646-55047665 None:intergenic 45.0%
ATTGAGTAGTGGCCCTCTAT+GGG - Chr8:55048940-55048959 MsG0880045160.01.T01:five_prime_UTR 45.0%
CAACCATCCAAACAAGACCA+TGG + Chr8:55049693-55049712 None:intergenic 45.0%
CGATGAGATCATGTTAGCTG+TGG - Chr8:55048646-55048665 MsG0880045160.01.T01:CDS 45.0%
CGTCCTTTATAGCCTGGTTA+TGG + Chr8:55048628-55048647 None:intergenic 45.0%
CTTGAGTGAAAGCCATAACC+AGG - Chr8:55048613-55048632 MsG0880045160.01.T01:CDS 45.0%
GAAGGGACTTGAAAAAGCTG+AGG + Chr8:55049022-55049041 None:intergenic 45.0%
GCAACAACATCTTCCATCTC+CGG + Chr8:55048992-55049011 None:intergenic 45.0%
GGAGATCTAAGAGAGAGAAG+AGG + Chr8:55047736-55047755 None:intergenic 45.0%
TCTCATCGTCCTTTATAGCC+TGG + Chr8:55048634-55048653 None:intergenic 45.0%
TCTGGAAGATTTGGCAGGTT+AGG - Chr8:55049423-55049442 MsG0880045160.01.T01:five_prime_UTR 45.0%
TCTTCCATACACCCCTTATG+TGG - Chr8:55047658-55047677 MsG0880045160.01.T01:CDS 45.0%
TGGAAGAGTGGTATGGAGAA+GGG + Chr8:55047645-55047664 None:intergenic 45.0%
TGGGGTTTCTCATCAATCTG+TGG - Chr8:55048959-55048978 MsG0880045160.01.T01:five_prime_UTR 45.0%
TTCAGATTCATCACACCTGG+TGG + Chr8:55049596-55049615 None:intergenic 45.0%
TTGATTCTCCTTTACCTCCG+CGG + Chr8:55048540-55048559 None:intergenic 45.0%
! ATAAGGGGTGTATGGAAGAG+TGG + Chr8:55047657-55047676 None:intergenic 45.0%
! CACTTTCTGGAAGATTTGGC+AGG - Chr8:55049418-55049437 MsG0880045160.01.T01:five_prime_UTR 45.0%
! CATAACCGGGTTGAAGCTTA+TGG - Chr8:55047785-55047804 MsG0880045160.01.T01:CDS 45.0%
! GACACCAAAAAATGGGCTTG+TGG + Chr8:55049088-55049107 None:intergenic 45.0%
!! GTTGCAGTGCCATTTACACT+TGG - Chr8:55048362-55048381 MsG0880045160.01.T01:CDS 45.0%
!! TCTACACTCAGCGTTGATTG+AGG - Chr8:55049233-55049252 MsG0880045160.01.T01:intron 45.0%
!! TTTGGTGTCTATGATGGGCA+TGG - Chr8:55049099-55049118 MsG0880045160.01.T01:five_prime_UTR 45.0%
!!! GCTGATTTTGGAACACCATC+TGG + Chr8:55049451-55049470 None:intergenic 45.0%
ACATCAGATCACGGTATCCG+CGG - Chr8:55048520-55048539 MsG0880045160.01.T01:CDS 50.0%
ACTCTGCCTCTCACATAACC+GGG - Chr8:55047772-55047791 MsG0880045160.01.T01:CDS 50.0%
AGATTCATCACACCTGGTGG+AGG + Chr8:55049593-55049612 None:intergenic 50.0%
ATGTGAGAGGCAGAGTGAGA+GGG + Chr8:55047768-55047787 None:intergenic 50.0%
ATTCATCACACCTGGTGGAG+GGG + Chr8:55049591-55049610 None:intergenic 50.0%
CACTCTGCCTCTCACATAAC+CGG - Chr8:55047771-55047790 MsG0880045160.01.T01:CDS 50.0%
CAGAGTGAGAGGGAGAAGAA+AGG + Chr8:55047758-55047777 None:intergenic 50.0%
CATACACCCCTTATGTGGCA+TGG - Chr8:55047663-55047682 MsG0880045160.01.T01:CDS 50.0%
CTGTGGAAATAGACCGGAGA+TGG - Chr8:55048976-55048995 MsG0880045160.01.T01:five_prime_UTR 50.0%
CTTCAACCCGGTTATGTGAG+AGG + Chr8:55047781-55047800 None:intergenic 50.0%
GATTCATCACACCTGGTGGA+GGG + Chr8:55049592-55049611 None:intergenic 50.0%
GGGTGTATGGAAGAGTGGTA+TGG + Chr8:55047652-55047671 None:intergenic 50.0%
TATGTGAGAGGCAGAGTGAG+AGG + Chr8:55047769-55047788 None:intergenic 50.0%
TTCTGCTCGGCCTTTAGTAC+CGG + Chr8:55048779-55048798 None:intergenic 50.0%
TTGAGTAGTGGCCCTCTATG+GGG - Chr8:55048941-55048960 MsG0880045160.01.T01:five_prime_UTR 50.0%
TTGGCAGGTTAGGAACCAGA+TGG - Chr8:55049433-55049452 MsG0880045160.01.T01:five_prime_UTR 50.0%
! CATGCCACATAAGGGGTGTA+TGG + Chr8:55047665-55047684 None:intergenic 50.0%
! CGAGGTACTTCCGGTACTAA+AGG - Chr8:55048766-55048785 MsG0880045160.01.T01:CDS 50.0%
TTCATCACACCTGGTGGAGG+GGG + Chr8:55049590-55049609 None:intergenic 55.0%
! TGATGGGCATGGAGGCTTTC+AGG - Chr8:55049110-55049129 MsG0880045160.01.T01:five_prime_UTR 55.0%
!! GGTGTCTATGATGGGCATGG+AGG - Chr8:55049102-55049121 MsG0880045160.01.T01:five_prime_UTR 55.0%
CACGGTATCCGCGGAGGTAA+AGG - Chr8:55048529-55048548 MsG0880045160.01.T01:CDS 60.0%
TCAGATCACGGTATCCGCGG+AGG - Chr8:55048523-55048542 MsG0880045160.01.T01:CDS 60.0%
! AGTTGGTGCGGCCGTTGTCT+CGG - Chr8:55048559-55048578 MsG0880045160.01.T01:CDS 60.0%
!!! TTTTGGTGTCCCCCTCCACC+AGG - Chr8:55049578-55049597 MsG0880045160.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 55047617 55049733 55047617 ID=MsG0880045160.01;Name=MsG0880045160.01
Chr8 mRNA 55047617 55049733 55047617 ID=MsG0880045160.01.T01;Parent=MsG0880045160.01;Name=MsG0880045160.01.T01;_AED=0.17;_eAED=0.17;_QI=561|0.5|0.66|1|0.5|0.33|3|0|332
Chr8 exon 55047617 55047905 55047617 ID=MsG0880045160.01.T01:exon:23757;Parent=MsG0880045160.01.T01
Chr8 exon 55048219 55049154 55048219 ID=MsG0880045160.01.T01:exon:23756;Parent=MsG0880045160.01.T01
Chr8 exon 55049399 55049733 55049399 ID=MsG0880045160.01.T01:exon:23755;Parent=MsG0880045160.01.T01
Chr8 five_prime_UTR 55049399 55049733 55049399 ID=MsG0880045160.01.T01:five_prime_utr;Parent=MsG0880045160.01.T01
Chr8 five_prime_UTR 55048929 55049154 55048929 ID=MsG0880045160.01.T01:five_prime_utr;Parent=MsG0880045160.01.T01
Chr8 CDS 55048219 55048928 55048219 ID=MsG0880045160.01.T01:cds;Parent=MsG0880045160.01.T01
Chr8 CDS 55047617 55047905 55047617 ID=MsG0880045160.01.T01:cds;Parent=MsG0880045160.01.T01
Gene Sequence

>MsG0880045160.01.T01

ATGGAGATAACAGGGTTGAAGCTTATGGCAAATACTGCTGCTGCTTTGATATTAAATCCTGCAGTTGGAAATGAAAACCATGCTGATGTTAGTCTTCAACATCAGATCACGGTATCCGCGGAGGTAAAGGAGAATCAAGTTGGTGCGGCCGTTGTCTCGGAAATGTTGATTGAATGTGGGAGTAATTGGATCTTGAGTGAAAGCCATAACCAGGCTATAAAGGACGATGAGATCATGTTAGCTGTGGATTTTCAGTGCCTGCATAATTCAGGCTCTCAATCTGTGGCAGATTCACCAATCATCGTTAAGGTTGGTGATGAGATTCATGGTAAGTTTAGCATAAACGAGGTACTTCCGGTACTAAAGGCCGAGCAGAATACGGATTCTGTTGCAATGGATATTGAGAGGGAAAATCGAAGTGTGTCAGAAGAGGCTGATCCAAAACTATCTGCTATTCTTCTTGATCAGTTGCCAAAGGAGAACAAAACATTGAGAACAAGCAACCAGAATGGTTTGGAATTGAGTAGTGGCCCTCTATGGGGTTTCTCATCAATCTGTGGAAATAGACCGGAGATGGAAGATGTTGTTGCTGTTAAACCTCAGCTTTTTCAAGTCCCTTCACAGATGCTAATGGATGACCATTTGAATGAAAACACAAAATATCCACAAGCCCATTTTTTGGTGTCTATGATGGGCATGGAGGCTTTCAGGAACCAGATGGTGTTCCAAAATCAGCAATTGAATCCTATCCAAATAGTTATTTCAATCTTGGAGTTCACTTCAGAGCTCAATTGTTCAAACCATTCTACAATTGCTACTGTTACAATGAAATTTGATGCTGAATTTTGGTGTCCCCCTCCACCAGGTGTGATGAATCTGAATTTAAATGTGGATGAAGGATACTTCAAGGAATCTGAATTTGAATCTAGAGACCATAAAGGAGTCTTAGAATTATCCATGGTCTTGTTTGGATGGTTGAGATATAAAATATTATTCTAG
Protein sequence

>MsG0880045160.01.T01

MEITGLKLMANTAAALILNPAVGNENHADVSLQHQITVSAEVKENQVGAAVVSEMLIECGSNWILSESHNQAIKDDEIMLAVDFQCLHNSGSQSVADSPIIVKVGDEIHGKFSINEVLPVLKAEQNTDSVAMDIERENRSVSEEADPKLSAILLDQLPKENKTLRTSNQNGLELSSGPLWGFSSICGNRPEMEDVVAVKPQLFQVPSQMLMDDHLNENTKYPQAHFLVSMMGMEAFRNQMVFQNQQLNPIQIVISILEFTSELNCSNHSTIATVTMKFDAEFWCPPPPGVMNLNLNVDEGYFKESEFESRDHKGVLELSMVLFGWLRYKILF*