AlfalfaGEDB | MsG0880045289.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045289.01

KEGG: K00276
GO: GO:0005507 GO:0008131 GO:0009308 GO:0048038 GO:0055114
PFAM: PF01179 PF02728

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045289.01.T01	KEH20163.1	97.099	724	20	1	1	723	1	724	0	1464

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045289.01.T01	Q07123	40	675	342	15	31	699	14	631	1.42E-158	476

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045289.01.T01	A0A072TTH8	97.099	724	20	1	1	723	1	724	0.0	1464

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180005623.01	MsG0880045289.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880045289.01.T01	MTR_8g069505	97.099	724	20	1	1	723	1	724	1464
MsG0880045289.01.T01	MTR_8g069505	97.071	717	20	1	8	723	58	774	1453
MsG0880045289.01.T01	MTR_8g069505	97.017	704	20	1	21	723	58	761	1426
MsG0880045289.01.T01	MTR_8g069505	97.000	700	20	1	25	723	1	700	1413
MsG0880045289.01.T01	MTR_5g033170	89.787	705	70	2	21	723	33	737	1312
MsG0880045289.01.T01	MTR_3g077080	82.934	709	114	3	21	723	62	769	1252
MsG0880045289.01.T01	MTR_3g077080	82.979	705	113	3	25	723	1	704	1243
MsG0880045289.01.T01	MTR_5g033170	89.624	665	67	2	21	683	33	697	1237
MsG0880045289.01.T01	MTR_8g069505	96.613	561	18	1	8	567	58	618	1134
MsG0880045289.01.T01	MTR_8g069505	96.607	560	18	1	8	566	58	617	1132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045289.01.T01	AT2G42490	83.616	708	111	2	21	723	69	776	0.0	1256
MsG0880045289.01.T01	AT1G31690	28.363	684	426	19	32	698	27	663	8.95e-74	252
MsG0880045289.01.T01	AT3G43670	29.197	685	420	22	32	698	41	678	4.15e-69	240
MsG0880045289.01.T01	AT1G31710	27.988	686	429	18	32	698	28	667	6.10e-69	239
MsG0880045289.01.T01	AT1G62810	28.258	683	429	20	32	698	60	697	4.71e-66	232
MsG0880045289.01.T01	AT1G31670	27.259	686	415	19	32	698	107	727	1.65e-65	231
MsG0880045289.01.T01	AT4G12290	28.654	691	424	23	32	699	82	726	4.04e-63	224
MsG0880045289.01.T01	AT4G14940	28.036	560	352	16	157	694	119	649	8.77e-61	216
MsG0880045289.01.T01	AT4G12290	27.646	633	389	23	32	641	82	668	8.76e-47	177
MsG0880045289.01.T01	AT4G12280	29.758	289	182	7	426	699	3	285	3.17e-30	121

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Find 258 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAATCTGTGGGCCAC+AGG	0.530449	8:-56973814	None:intergenic
AAAGGTAAACAATTTGAACC+AGG	0.682578	8:-56976055	None:intergenic
AAATATTTCAGGTACGTATT+TGG	0.157384	8:+56976585	MsG0880045289.01.T01:intron
AAATGCTCATTCACTCAAGA+AGG	0.535399	8:+56973924	MsG0880045289.01.T01:CDS
AACCGAACCGGGCATCTAAC+AGG	0.397118	8:+56976019	MsG0880045289.01.T01:CDS
AACCTGTTAGATGCCCGGTT+CGG	0.521498	8:-56976021	None:intergenic
AACTACTGAACACTTACTTA+AGG	0.448743	8:-56971380	None:intergenic
AACTTCATTAAACACGAATT+TGG	0.214007	8:-56972038	None:intergenic
AAGAAGATCATGGTATGTTA+TGG	0.414092	8:+56974154	MsG0880045289.01.T01:CDS
AAGAAGCTGACATAGTTCTC+TGG	0.509436	8:+56976245	MsG0880045289.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTAAACAATTTGAACC+AGG	-	Chr8:56976058-56976077	None:intergenic	30.0%
AACTACTGAACACTTACTTA+AGG	-	Chr8:56971383-56971402	None:intergenic	30.0%
AAGAAGATCATGGTATGTTA+TGG	+	Chr8:56974154-56974173	MsG0880045289.01.T01:CDS	30.0%
AATACCTATGTCAAAGGAAA+TGG	-	Chr8:56972454-56972473	None:intergenic	30.0%
AATTCTGTTCCAATCGAAAA+TGG	-	Chr8:56972201-56972220	None:intergenic	30.0%
ACTTGTCGATATGCAAAATA+TGG	+	Chr8:56973438-56973457	MsG0880045289.01.T01:CDS	30.0%
AGAAAAATCTACACCAAAAG+AGG	-	Chr8:56972598-56972617	None:intergenic	30.0%
AGAGAAAGAAAACAAGAACA+AGG	-	Chr8:56971762-56971781	None:intergenic	30.0%
ATAAAAAAAATTGGGGTCTC+GGG	-	Chr8:56975069-56975088	None:intergenic	30.0%
ATCCAAATGATCCTCATTAT+AGG	+	Chr8:56973863-56973882	MsG0880045289.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	56970766	56977122	56970766	ID=MsG0880045289.01;Name=MsG0880045289.01
Chr8	mRNA	56970766	56977122	56970766	ID=MsG0880045289.01.T01;Parent=MsG0880045289.01;Name=MsG0880045289.01.T01;_AED=0.20;_eAED=0.20;_QI=1642\|0.9\|0.81\|1\|0.9\|0.81\|11\|223\|723
Chr8	exon	56970766	56972578	56970766	ID=MsG0880045289.01.T01:exon:24358;Parent=MsG0880045289.01.T01
Chr8	exon	56972659	56972964	56972659	ID=MsG0880045289.01.T01:exon:24359;Parent=MsG0880045289.01.T01
Chr8	exon	56973104	56973216	56973104	ID=MsG0880045289.01.T01:exon:24360;Parent=MsG0880045289.01.T01
Chr8	exon	56973309	56973639	56973309	ID=MsG0880045289.01.T01:exon:24361;Parent=MsG0880045289.01.T01
Chr8	exon	56973730	56973945	56973730	ID=MsG0880045289.01.T01:exon:24362;Parent=MsG0880045289.01.T01
Chr8	exon	56974057	56974339	56974057	ID=MsG0880045289.01.T01:exon:24363;Parent=MsG0880045289.01.T01
Chr8	exon	56974806	56974942	56974806	ID=MsG0880045289.01.T01:exon:24364;Parent=MsG0880045289.01.T01
Chr8	exon	56975161	56975301	56975161	ID=MsG0880045289.01.T01:exon:24365;Parent=MsG0880045289.01.T01
Chr8	exon	56975998	56976266	56975998	ID=MsG0880045289.01.T01:exon:24366;Parent=MsG0880045289.01.T01
Chr8	exon	56976596	56976677	56976596	ID=MsG0880045289.01.T01:exon:24367;Parent=MsG0880045289.01.T01
Chr8	exon	56976777	56977122	56976777	ID=MsG0880045289.01.T01:exon:24368;Parent=MsG0880045289.01.T01
Chr8	five_prime_UTR	56970766	56972407	56970766	ID=MsG0880045289.01.T01:five_prime_utr;Parent=MsG0880045289.01.T01
Chr8	CDS	56972408	56972578	56972408	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56972659	56972964	56972659	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56973104	56973216	56973104	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56973309	56973639	56973309	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56973730	56973945	56973730	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56974057	56974339	56974057	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56974806	56974942	56974806	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56975161	56975301	56975161	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56975998	56976266	56975998	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56976596	56976677	56976596	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	CDS	56976777	56976899	56976777	ID=MsG0880045289.01.T01:cds;Parent=MsG0880045289.01.T01
Chr8	three_prime_UTR	56976900	56977122	56976900	ID=MsG0880045289.01.T01:three_prime_utr;Parent=MsG0880045289.01.T01

Gene Sequence

>MsG0880045289.01.T01

ATGAAATTTTTTCTTCTATCAGAATTAAAAGATAGAAAAGAAACCATTTCCTTTGACATAGGTATTACAGTAATGGCGAAAGCACAAACTTGCCATCCTTTGGATCCACTTTCTGCTGCTGAAATATCTGTAGCTGTTGCAACTGTTCGAGCAGCCGGAGCAACACCTGAGGTGAGGGACGGTATGCGGTTCATTGAAGTAGGTTTGGTAGAACCAGAAAAGCAAGTTGTTGCGTTAGCAGATGCGTACTTCTTCCCACCTTTCCAACCCTCGTTGCTCCCGAGAATAAAAGGTGGACCTGTGATTCCATCTAAATTGCCTCCAAGGAAAGCGAGATTGGTTGTCTATAATAAAAAGTCAAATGAGACAAGCATATGGATTGTTGAACTTACAGAAGTTCATGCAACAACTCGTGGCGGTCATCATAGAGGCAAAGTGATTACTTCTACAGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTGTGGAATATGCTGAATGTGAAGCTGTTGTAAAGAACTTTCCTCCATTTCGAGAGGCAATGAAGAAGAGAGGAATTGAAGATATGGATCTTGTGATGGTGGATCCATGGTGTGCCGGATATCATAGTGAAGGTGATGCTCCAAGCCGCAGACTTGCTAAACCACTATTCTTTTGTAGGACTGAGAGTGACTGTCCTATGGAGAACGGCTATGCTCGTCCGGTTGAAGGAATACATGTACTTGTCGATATGCAAAATATGGTTGTCCTTGAGTTTGAAGATCGTAAGCTTGTTCCCCTTCCACAGGCTGATCCATTAAGAAATTATACTTCTGGTGAAACACGGGGAGGAGTTGATCGAAGTGATGTGAAACCCTTACAGATTATTCAGCCAGATGGTCCAAGCTTTCGTGTCAATGGGAACTTCATTCAATGGCAGAAGTGGAACTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTTATTTATTCAGTGGCTTATATTGATGGAAGTCGTGGCCGAAGGCCTGTGGCCCACAGATTGAGTTTTGTTGAGATGGTTGTCCCTTATGGAGATCCAAATGATCCTCATTATAGGAAAAATGCTTTTGATGCCGGGGAAGATGGCCTCGGTAAAAATGCTCATTCACTCAAGAAGGGTTGTGATTGTTTAGGCTATATCAAGTACTTCGATGCACACTTTACAAACTTTTATGGAGGCATTGAAACAATCGAGAATTGTGTTTGCATGCATGAAGAAGATCATGGTATGTTATGGAAGCATCAAGATTGGAGAACAGGTTTGGCTGAAGTTCGGCGGTCTAGAAGGTTGACAGTGTCTTTTATATGCACTGTTGCTAACTATGAGTATGGATTTTACTGGCACTTTTATCAGGCAAGTCAATTAGTCTTGCATTTATCTTGTCTGTTATACTACATTGGTGCATTGCAGCAAGGTGAAACTCGAAAATATGGCACAACTATTGCACCTGGATTATATGCACCTGTCCACCAACACTTTTTCGTTGCTCGTATGGACATGGCAGTTGATTGCAAGCCCGGTGAAGCATTTAATCAGGTTGTTGAGGTGAATGTCAAAGTTGAAGAGCCAGGAAAGAATAATGTTCACAACAATGCATTTTATGCCGAGGAAAAACTGCTAAAATCGGAATTAGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCATTGGATTGTTAGGAACACGAGGAGTGTGAACCGAACCGGGCATCTAACAGGTTACAAACTAGTTCCTGGTTCAAATTGTTTACCTTTAGCTGGATCAGAGGCTAAGTTTTTAAGAAGAGCAGCTTTCTTGAAGCACAATCTATGGGTTACACCTTACGCACACGACGAATTGCATCCTGGTGGAGAGTTCCCTAATCAAAATCCCCGCGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAACCGACCATTGGAAGAAGCTGACATAGTTCTCTGGTACGTATTTGGGGTGACACACATTCCTCGATTGGAAGACTGGCCTGTTATGCCCGTGGAACACATTGGTTTTATGCTTATGCCACATGGATTTTTCAATTGCTCACCGGCAGTAGATGTTCCACCAAGCCCAGGTGATTTGGATGATAAGGAGAATGGTATGCCTGCCAAGCCTAGTCAGAATGGGTTAATTGCCAAGCTTTGA

Protein sequence

>MsG0880045289.01.T01

MKFFLLSELKDRKETISFDIGITVMAKAQTCHPLDPLSAAEISVAVATVRAAGATPEVRDGMRFIEVGLVEPEKQVVALADAYFFPPFQPSLLPRIKGGPVIPSKLPPRKARLVVYNKKSNETSIWIVELTEVHATTRGGHHRGKVITSTVVPDVQPPMDAVEYAECEAVVKNFPPFREAMKKRGIEDMDLVMVDPWCAGYHSEGDAPSRRLAKPLFFCRTESDCPMENGYARPVEGIHVLVDMQNMVVLEFEDRKLVPLPQADPLRNYTSGETRGGVDRSDVKPLQIIQPDGPSFRVNGNFIQWQKWNFRIGFTPREGLVIYSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFYGGIETIENCVCMHEEDHGMLWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFYWHFYQASQLVLHLSCLLYYIGALQQGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEVNVKVEEPGKNNVHNNAFYAEEKLLKSELEAMRDCDPLSARHWIVRNTRSVNRTGHLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNLWVTPYAHDELHPGGEFPNQNPRVGEGLATWVKQNRPLEEADIVLWYVFGVTHIPRLEDWPVMPVEHIGFMLMPHGFFNCSPAVDVPPSPGDLDDKENGMPAKPSQNGLIAKL*