AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005623.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005623.01.T01 MTR_1g104590 95.840 673 28 0 1 673 3 675 0.0 1354
MsG0180005623.01.T01 MTR_4g117660 56.101 672 287 3 3 670 7 674 0.0 813
MsG0180005623.01.T01 MTR_4g045887 57.015 670 280 3 3 669 7 671 0.0 803
MsG0180005623.01.T01 MTR_4g117610 56.000 675 284 5 1 670 1 667 0.0 790
MsG0180005623.01.T01 MTR_4g117670 60.357 560 221 1 110 669 31 589 0.0 745
MsG0180005623.01.T01 MTR_1g104550 53.481 632 287 2 25 656 34 658 0.0 742
MsG0180005623.01.T01 MTR_3g080500 46.575 657 336 8 25 672 78 728 0.0 608
MsG0180005623.01.T01 MTR_3g077080 29.515 681 414 23 25 656 8 671 3.35e-78 264
MsG0180005623.01.T01 MTR_3g077080 29.515 681 414 23 25 656 73 736 9.58e-78 264
MsG0180005623.01.T01 MTR_8g069505 29.000 700 435 20 2 656 13 695 1.43e-76 259
MsG0180005623.01.T01 MTR_8g069505 29.542 677 419 19 25 656 8 671 1.85e-76 259
MsG0180005623.01.T01 MTR_8g069505 29.000 700 435 20 2 656 63 745 3.99e-76 259
MsG0180005623.01.T01 MTR_8g069505 29.542 677 419 19 25 656 69 732 7.18e-76 259
MsG0180005623.01.T01 MTR_5g033170 29.412 680 417 21 25 656 44 708 1.35e-74 254
MsG0180005623.01.T01 MTR_3g077080 31.073 531 330 16 146 656 1 515 3.87e-72 243
MsG0180005623.01.T01 MTR_5g033170 29.341 668 409 21 25 644 44 696 6.64e-72 247
MsG0180005623.01.T01 MTR_8g069505 28.352 522 314 18 2 480 63 567 2.88e-48 179
MsG0180005623.01.T01 MTR_8g069505 29.058 499 298 17 25 480 8 493 3.76e-48 178
MsG0180005623.01.T01 MTR_8g069505 28.352 522 314 18 2 480 63 567 3.84e-48 179
MsG0180005623.01.T01 MTR_8g069505 29.058 499 298 17 25 480 69 554 7.77e-48 179
MsG0180005623.01.T01 MTR_4g098910 41.584 101 55 2 58 157 27 124 1.29e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005623.01.T01 AT1G31690 61.077 650 248 4 24 670 26 673 0.0 845
MsG0180005623.01.T01 AT1G31710 58.742 652 261 5 25 670 28 677 0.0 818
MsG0180005623.01.T01 AT1G31670 56.951 669 265 7 9 673 91 740 0.0 796
MsG0180005623.01.T01 AT4G14940 51.145 655 306 5 6 656 5 649 0.0 705
MsG0180005623.01.T01 AT4G12290 46.165 665 332 10 25 672 82 737 0.0 614
MsG0180005623.01.T01 AT1G62810 46.697 651 331 9 16 658 53 695 0.0 605
MsG0180005623.01.T01 AT3G43670 43.884 654 339 10 17 656 35 674 0.0 569
MsG0180005623.01.T01 AT4G12290 44.908 599 304 10 25 606 82 671 3.65e-179 525
MsG0180005623.01.T01 AT4G12280 52.595 289 129 2 389 669 5 293 6.58e-106 324
MsG0180005623.01.T01 AT4G12270 40.933 386 188 10 25 384 84 455 9.53e-90 287
MsG0180005623.01.T01 AT2G42490 28.761 678 423 17 25 656 80 743 1.55e-77 263

Find 166 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTTGTCAAGACAAATT+TGG 0.163089 1:-94157983 MsG0180005623.01.T01:CDS
GTTGGGCTTACTGGTATATT+AGG 0.165498 1:-94158147 MsG0180005623.01.T01:CDS
TTAAAATAGGTTGGGCTTAC+TGG 0.179307 1:-94158156 MsG0180005623.01.T01:intron
TTTACTGATCAGATCGAATA+TGG 0.181086 1:+94157182 None:intergenic
ACAAAACAAGGAAATCAAAT+TGG 0.202546 1:-94157817 MsG0180005623.01.T01:CDS
CCGTTTGGTCCAAAGCTTAA+AGG 0.225115 1:-94160526 MsG0180005623.01.T01:CDS
CTTTGATCAGTTGGGCCAAT+TGG 0.227450 1:-94158945 MsG0180005623.01.T01:intron
TACTTTGATTGTGGTGAATA+TGG 0.233955 1:-94158760 MsG0180005623.01.T01:CDS
CTTTAGCAGTTTGGAGTCTA+AGG 0.250428 1:-94157630 MsG0180005623.01.T01:intron
AGGATTCCTCTCAAAGAAAT+TGG 0.255874 1:+94157356 None:intergenic
TACTCAGTCCCTTCAGCTTT+TGG 0.259526 1:+94160571 None:intergenic
CTCAATTGTGCATCCACTTT+TGG 0.264948 1:-94157776 MsG0180005623.01.T01:CDS
TACTGGTATATTAGGGATTA+AGG 0.267723 1:-94158139 MsG0180005623.01.T01:CDS
CTTGAATGTCGAATCCTAAA+TGG 0.275025 1:+94158917 None:intergenic
CTTGATGAAATGAGAATTCT+TGG 0.276428 1:-94160622 MsG0180005623.01.T01:CDS
ATTGGGTACCGTTTGCTTCC+AGG 0.281181 1:-94157799 MsG0180005623.01.T01:CDS
AAAGAAATTACCACTTCATT+TGG 0.299034 1:+94158562 None:intergenic
TTCTTTGATTTGATCTGTAT+TGG 0.307370 1:+94158104 None:intergenic
AGAACAAGGATATTGTATTA+TGG 0.321872 1:-94157464 MsG0180005623.01.T01:CDS
TATCTTGACCTTGACATTGA+TGG 0.340459 1:-94158015 MsG0180005623.01.T01:CDS
CGAATGTTTAAACGGTTCAT+AGG 0.351625 1:+94160813 None:intergenic
TTGGGCTTACTGGTATATTA+GGG 0.355547 1:-94158146 MsG0180005623.01.T01:CDS
GTGATGATACTTTAGCAGTT+TGG 0.361600 1:-94157639 MsG0180005623.01.T01:CDS
AGGAATATGACTGCATTCTA+TGG 0.363674 1:+94161176 None:intergenic
CAATACCTAGGAAAAGTTAT+TGG 0.365047 1:-94157936 MsG0180005623.01.T01:CDS
ACAGATATGCCTTTAAGCTT+TGG 0.374151 1:+94160517 None:intergenic
GATGATTATCCACAGATTAG+AGG 0.375745 1:-94157748 MsG0180005623.01.T01:CDS
ACTATGATTATGTTATAGAT+TGG 0.378562 1:-94158402 MsG0180005623.01.T01:CDS
AATGTCAAGGTCAAGATAAT+AGG 0.382154 1:+94158020 None:intergenic
ATTGATGCTAAAGAAACTAT+TGG 0.384586 1:+94158889 None:intergenic
ACCATTCTTCACTTGGGTCT+TGG 0.384600 1:+94158794 None:intergenic
TTTGATCAGTTGGGCCAATT+GGG 0.389327 1:-94158944 MsG0180005623.01.T01:intron
CATACAACAAAACTGAGAAA+TGG 0.397433 1:-94157693 MsG0180005623.01.T01:CDS
TTAATTTCTGAAGGTGTTAG+AGG 0.398419 1:+94161141 None:intergenic
AGGTGGTGGAGGAAGAGTTT+TGG 0.399864 1:+94160993 None:intergenic
AAAAGTGAGGTTGTGGTGTT+TGG 0.400183 1:+94161083 None:intergenic
TGAGGTTGTGGTGTTTGGTT+TGG 0.407503 1:+94161088 None:intergenic
ATTTCATCATGTTCCTTCTC+AGG 0.409173 1:-94157430 MsG0180005623.01.T01:CDS
TTCTTCAACGAATGTTTAAA+CGG 0.416479 1:+94160805 None:intergenic
CCACTCAACGTAGGCATGAC+TGG 0.418913 1:+94157399 None:intergenic
TCTTCACTTGGGTCTTGGTA+TGG 0.419526 1:+94158799 None:intergenic
TAATCATCATTTACCAAAAG+TGG 0.421314 1:+94157763 None:intergenic
GTCAAGCCTTTGTCATAGTA+AGG 0.426454 1:-94160969 MsG0180005623.01.T01:CDS
TTGGGCCAATGCATAGGCTT+TGG 0.427838 1:+94157315 None:intergenic
CCATCCAAGGTCACTCCGTC+AGG 0.427909 1:-94160468 MsG0180005623.01.T01:intron
GTGTAATACCATTCTTCACT+TGG 0.433020 1:+94158787 None:intergenic
GATTGTGGTGAATATGGCTT+TGG 0.433096 1:-94158754 MsG0180005623.01.T01:CDS
GTTTGGTTTGGTATGATTTG+AGG 0.437353 1:+94161100 None:intergenic
ATACAACAAAACTGAGAAAT+GGG 0.441699 1:-94157692 MsG0180005623.01.T01:CDS
GTGAAGTGTTATTACAAGAA+TGG 0.446073 1:-94160697 MsG0180005623.01.T01:CDS
CAAATCAAAGAAGACATTCA+TGG 0.451628 1:-94158093 MsG0180005623.01.T01:CDS
CAAGTGGTAGCATCAAGCTT+GGG 0.452360 1:-94158369 MsG0180005623.01.T01:CDS
ATGATTTGAGGATTATGTTA+CGG 0.452510 1:+94161112 None:intergenic
TGATTGGATGAGAGGTTTGT+CGG 0.455041 1:+94161038 None:intergenic
ATCCTTTGTATAGTACTTCA+CGG 0.458399 1:+94158842 None:intergenic
GGCTACCCTATCCTTACCTT+TGG 0.459203 1:-94160868 MsG0180005623.01.T01:CDS
CTATGATTATGTTATAGATT+GGG 0.467003 1:-94158401 MsG0180005623.01.T01:CDS
GTTAGAGGGTCAAGTGGGTG+AGG 0.473682 1:+94161156 None:intergenic
CAAGATAATAGGTAAAGAAA+TGG 0.475626 1:+94158031 None:intergenic
GATTGGATGAGAGGTTTGTC+GGG 0.476595 1:+94161039 None:intergenic
GGATAGGGAGATTGAGAACA+AGG 0.479632 1:-94157478 MsG0180005623.01.T01:CDS
TGTTCACCAAAGGTAAGGAT+AGG 0.481924 1:+94160862 None:intergenic
CAAAACAAGGAAATCAAATT+GGG 0.482146 1:-94157816 MsG0180005623.01.T01:CDS
AAAACAATCCCTCGAAATCA+TGG 0.482562 1:-94160941 MsG0180005623.01.T01:CDS
TCCTAAATGGAAAACCCAAT+TGG 0.486397 1:+94158930 None:intergenic
TTACTGATCAGATCGAATAT+GGG 0.488498 1:+94157183 None:intergenic
TTGGACTGTTGTAAAGGAAA+CGG 0.489744 1:-94157917 MsG0180005623.01.T01:CDS
ATTTGTCTTGACAAAGGAGT+TGG 0.491647 1:+94157987 None:intergenic
AAGTTATTGGACTGTTGTAA+AGG 0.495057 1:-94157923 MsG0180005623.01.T01:CDS
ATTGTATTATGGCACACAAT+GGG 0.500762 1:-94157453 MsG0180005623.01.T01:CDS
TCTAAGATGAAGCCACCGTT+TGG 0.502594 1:-94160541 MsG0180005623.01.T01:CDS
TTCCTCTCAAAGAAATTGGT+TGG 0.505842 1:+94157360 None:intergenic
CCTTTAAGCTTTGGACCAAA+CGG 0.506349 1:+94160526 None:intergenic
TACACAACCTACTTTGATTG+TGG 0.507919 1:-94158769 MsG0180005623.01.T01:CDS
TTTGTATGCAAGACCATTGG+AGG 0.509999 1:-94160665 MsG0180005623.01.T01:CDS
GAATTGAATGTGTAGGGATA+GGG 0.511193 1:-94157493 MsG0180005623.01.T01:intron
CTTTCACTAATTATAATGTG+TGG 0.512457 1:-94157723 MsG0180005623.01.T01:CDS
TGTAATACCATTCTTCACTT+GGG 0.512744 1:+94158788 None:intergenic
GGTATATTAGGGATTAAGGC+AGG 0.513268 1:-94158135 MsG0180005623.01.T01:CDS
GACCAACCAATTTCTTTGAG+AGG 0.513325 1:-94157362 MsG0180005623.01.T01:CDS
TGTTGGAGGATAGCCATGAT+TGG 0.516217 1:+94161022 None:intergenic
AGTGGATGCACAATTGAGCC+TGG 0.520950 1:+94157781 None:intergenic
ACATAAGAGCATGAGGAGAA+AGG 0.525403 1:+94161203 None:intergenic
ACCAAGACCCAAGTGAAGAA+TGG 0.525685 1:-94158795 MsG0180005623.01.T01:CDS
CCAAGTGGTAGCATCAAGCT+TGG 0.529898 1:-94158370 MsG0180005623.01.T01:CDS
TGGTTTGTTCACCAAAGGTA+AGG 0.530916 1:+94160857 None:intergenic
ACAAACCTCTCATCCAATCA+TGG 0.531898 1:-94161035 MsG0180005623.01.T01:CDS
ACAAAGGCTTGACGAGGTGG+TGG 0.532967 1:+94160979 None:intergenic
ATTACCTGACGGAGTGACCT+TGG 0.533638 1:+94160464 None:intergenic
TTGGAACCTTACTATGACAA+AGG 0.533882 1:+94160963 None:intergenic
CGGACAAGGTTAATTTCTGA+AGG 0.539443 1:+94161132 None:intergenic
TGTAAGCTTAATAGTGAGAT+CGG 0.543713 1:-94158440 MsG0180005623.01.T01:CDS
TACGGTAGGTTGGTTTGGAG+AGG 0.547168 1:-94160743 MsG0180005623.01.T01:CDS
ATTGGAGGGTGTGGCAGCTG+TGG 0.548777 1:-94160650 MsG0180005623.01.T01:CDS
GTGAGATCGGTTTCAACTGT+GGG 0.550438 1:-94158427 MsG0180005623.01.T01:CDS
TCTAGGAAGACAGCATTGGC+AGG 0.552138 1:+94158694 None:intergenic
TTAAACGGTTCATAGGTGAA+TGG 0.552700 1:+94160820 None:intergenic
TGCAAGACCATTGGAGGGTG+TGG 0.554369 1:-94160659 MsG0180005623.01.T01:CDS
AAGGCTTGACGAGGTGGTGG+AGG 0.554722 1:+94160982 None:intergenic
CCAGTCATGCCTACGTTGAG+TGG 0.556192 1:-94157399 MsG0180005623.01.T01:CDS
TAATGTTGAAAAGTGCAGTT+GGG 0.556487 1:+94157297 None:intergenic
AAAAGTCTACCATGATTTCG+AGG 0.556844 1:+94160932 None:intergenic
CTCCAAATTTGTCTTGACAA+AGG 0.558989 1:+94157981 None:intergenic
ATTCCAGTGCCAAAAGCTGA+AGG 0.560303 1:-94160580 MsG0180005623.01.T01:CDS
CTAATGTTGAAAAGTGCAGT+TGG 0.562794 1:+94157296 None:intergenic
GTGCAGTTGGGCCAATGCAT+AGG 0.562944 1:+94157309 None:intergenic
TTTCACTAATTATAATGTGT+GGG 0.565859 1:-94157722 MsG0180005623.01.T01:CDS
GTTCACCAAAGGTAAGGATA+GGG 0.566348 1:+94160863 None:intergenic
GATAGCCATGATTGGATGAG+AGG 0.567567 1:+94161030 None:intergenic
TAATTTGTATGCAAGACCAT+TGG 0.568732 1:-94160668 MsG0180005623.01.T01:CDS
TGCAATGGTTTGTTCACCAA+AGG 0.574068 1:+94160852 None:intergenic
TTGCTAGCTGATAACACCAT+TGG 0.576690 1:-94158066 MsG0180005623.01.T01:CDS
AAAGTCTACCATGATTTCGA+GGG 0.581187 1:+94160933 None:intergenic
AACAAAACTGAGAAATGGGC+AGG 0.581483 1:-94157688 MsG0180005623.01.T01:CDS
TAATTTCTGAAGGTGTTAGA+GGG 0.583888 1:+94161142 None:intergenic
AATTGCAATTCCAAATGAAG+TGG 0.584112 1:-94158572 MsG0180005623.01.T01:intron
ACTGGATAATCTTCCTGAGA+AGG 0.584969 1:+94157417 None:intergenic
TAAGCCTTCTGAGTTACTAG+TGG 0.586124 1:-94157857 MsG0180005623.01.T01:CDS
ACAGCTGCCACACCCTCCAA+TGG 0.586261 1:+94160652 None:intergenic
GTCATGCCTACGTTGAGTGG+TGG 0.588484 1:-94157396 MsG0180005623.01.T01:CDS
TGTGGCAGATAACTGAGGTC+AGG 0.588686 1:-94158468 MsG0180005623.01.T01:intron
CCAAGCTTGATGCTACCACT+TGG 0.590234 1:+94158370 None:intergenic
GGACCTGGTTTCACCATCCA+AGG 0.591002 1:-94160481 MsG0180005623.01.T01:CDS
TATTGTATTATGGCACACAA+TGG 0.591427 1:-94157454 MsG0180005623.01.T01:CDS
ATATTCACCACAATCAAAGT+AGG 0.591448 1:+94158762 None:intergenic
AAGCAGAATAGTATGCGTCT+AGG 0.592646 1:+94158677 None:intergenic
TTAGGATTCGACATTCAAGT+TGG 0.594138 1:-94158913 MsG0180005623.01.T01:CDS
AATCACCAAAGCCTATGCAT+TGG 0.596584 1:-94157320 MsG0180005623.01.T01:CDS
GTGAAAGCACCTCTAATCTG+TGG 0.599693 1:+94157739 None:intergenic
TGCGTCTAGGAAGACAGCAT+TGG 0.603158 1:+94158690 None:intergenic
TGAAAGATCAAACAATACCT+AGG 0.603738 1:-94157948 MsG0180005623.01.T01:CDS
TGAGGATTATGTTACGGACA+AGG 0.606056 1:+94161118 None:intergenic
GATTGGGAGTTTAAGCCAAG+TGG 0.613885 1:-94158385 MsG0180005623.01.T01:CDS
ATCTCAACAAAACTCTACAA+AGG 0.617196 1:-94160895 MsG0180005623.01.T01:CDS
CAATTGAGCCTGGAAGCAAA+CGG 0.617474 1:+94157791 None:intergenic
TGGCTTCACCATCAATGTCA+AGG 0.618777 1:+94158007 None:intergenic
CGTAGTGAAAAGTGAGGTTG+TGG 0.618977 1:+94161076 None:intergenic
TGACCTTGGATGGTGAAACC+AGG 0.621250 1:+94160478 None:intergenic
TTGGCAGGACAATCTGTGAA+AGG 0.622053 1:+94158709 None:intergenic
AAGTGGTAGCATCAAGCTTG+GGG 0.623421 1:-94158368 MsG0180005623.01.T01:intron
GCATACTATTCTGCTTCAGA+TGG 0.624085 1:-94158670 MsG0180005623.01.T01:CDS
ACTGATGCAAGAGTCAACAT+TGG 0.624674 1:-94157883 MsG0180005623.01.T01:CDS
TGGAGTTACATAAGAGCATG+AGG 0.626969 1:+94161196 None:intergenic
CCTGACGGAGTGACCTTGGA+TGG 0.627284 1:+94160468 None:intergenic
TTGTATGCAAGACCATTGGA+GGG 0.628719 1:-94160664 MsG0180005623.01.T01:CDS
GAAGGTGTTAGAGGGTCAAG+TGG 0.633794 1:+94161150 None:intergenic
TTAAGCTTTGGACCAAACGG+TGG 0.635575 1:+94160529 None:intergenic
ATGACAAAGGCTTGACGAGG+TGG 0.637143 1:+94160976 None:intergenic
TTTACCACTAGTAACTCAGA+AGG 0.641809 1:+94157853 None:intergenic
TTCCAGTGCCAAAAGCTGAA+GGG 0.644894 1:-94160579 MsG0180005623.01.T01:CDS
GTATATTAGGGATTAAGGCA+GGG 0.645710 1:-94158134 MsG0180005623.01.T01:CDS
AGTGAGATCGGTTTCAACTG+TGG 0.648718 1:-94158428 MsG0180005623.01.T01:CDS
GTAAGTCAACATGATGGACC+TGG 0.649655 1:-94160496 MsG0180005623.01.T01:CDS
GAATGGTAACTGTGATGCAA+TGG 0.650927 1:+94160837 None:intergenic
TACCGTGAAGTACTATACAA+AGG 0.653255 1:-94158844 MsG0180005623.01.T01:CDS
AAAACTGAGAAATGGGCAGG+AGG 0.656721 1:-94157685 MsG0180005623.01.T01:CDS
ACAAAACTCTACAAAGGACA+AGG 0.665601 1:-94160889 MsG0180005623.01.T01:CDS
TTATATGTTGATCATAGCAG+AGG 0.670339 1:-94157661 MsG0180005623.01.T01:CDS
AAGGTGTTAGAGGGTCAAGT+GGG 0.671650 1:+94161151 None:intergenic
ATGGTCATGATAGACACCAA+TGG 0.677878 1:+94158050 None:intergenic
ATATCTGTAAGTCAACATGA+TGG 0.685391 1:-94160502 MsG0180005623.01.T01:CDS
ACTATGACAAAGGCTTGACG+AGG 0.716443 1:+94160973 None:intergenic
TCAAATCCACCACTCAACGT+AGG 0.724526 1:+94157390 None:intergenic
ATCCTACGTAGTGAAAAGTG+AGG 0.731935 1:+94161070 None:intergenic
AGTATGCTGGTGATATCATG+TGG 0.737902 1:-94158606 MsG0180005623.01.T01:CDS
TTGTGTGTGGCAGATAACTG+AGG 0.795071 1:-94158473 MsG0180005623.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATTCTAAATATTTAT+AGG - Chr1:94158765-94158784 MsG0180005623.01.T01:CDS 10.0%
!! ATATTAATTAAGAATTGAAA+AGG + Chr1:94159034-94159053 None:intergenic 10.0%
!! ATTCAAATTATAAAATGATA+TGG + Chr1:94158944-94158963 None:intergenic 10.0%
!! CAAAATTCTAAATATTTATA+GGG - Chr1:94158766-94158785 MsG0180005623.01.T01:CDS 10.0%
!!! AAGTCTTTATAATTTTTTTT+TGG - Chr1:94158469-94158488 MsG0180005623.01.T01:intron 10.0%
!! TAATGCATAATATTAGTATA+AGG + Chr1:94158311-94158330 None:intergenic 15.0%
!! TAGAAAAACACATTATTAAT+GGG + Chr1:94159256-94159275 None:intergenic 15.0%
!! TGTTCTCATTAAAAATTATA+AGG - Chr1:94161135-94161154 MsG0180005623.01.T01:CDS 15.0%
!! TTAGAAAAACACATTATTAA+TGG + Chr1:94159257-94159276 None:intergenic 15.0%
!!! ATGTTGATGAAAAATTTTAT+AGG - Chr1:94158705-94158724 MsG0180005623.01.T01:CDS 15.0%
!!! ATTCAAACTATGTTTTTTTA+AGG + Chr1:94158396-94158415 None:intergenic 15.0%
!!! GTTTTTAAATTCAATATTAC+TGG + Chr1:94159074-94159093 None:intergenic 15.0%
!!! TATAACAGTTTTAAAATGTA+GGG + Chr1:94158809-94158828 None:intergenic 15.0%
!!! TGTTGATGAAAAATTTTATA+GGG - Chr1:94158706-94158725 MsG0180005623.01.T01:CDS 15.0%
!! AAAAATATTAGTATAAGGTC+TGG - Chr1:94158214-94158233 MsG0180005623.01.T01:intron 20.0%
!! AACAACTAATTACAAACTTA+TGG + Chr1:94160198-94160217 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG + Chr1:94158548-94158567 None:intergenic 20.0%
!! ACTATGATTATGTTATAGAT+TGG - Chr1:94160001-94160020 MsG0180005623.01.T01:intron 20.0%
!! ATATATAAATTAGCGACTAA+TGG - Chr1:94158023-94158042 MsG0180005623.01.T01:CDS 20.0%
!! CAAAACTGTGAATATTTATA+GGG + Chr1:94158547-94158566 None:intergenic 20.0%
!! CCTAATAAAAAAACAAAACA+AGG - Chr1:94160574-94160593 MsG0180005623.01.T01:CDS 20.0%
!! CTATGATTATGTTATAGATT+GGG - Chr1:94160002-94160021 MsG0180005623.01.T01:intron 20.0%
!! GCACAAAAAATATTAGTATA+AGG - Chr1:94158209-94158228 MsG0180005623.01.T01:intron 20.0%
!! TAAAAAACTACAATGATTGA+TGG - Chr1:94159343-94159362 MsG0180005623.01.T01:intron 20.0%
!! TAGAAAAACACATTGTTAAT+GGG + Chr1:94159000-94159019 None:intergenic 20.0%
!! TATATATGGCATAAAACATT+TGG + Chr1:94160075-94160094 None:intergenic 20.0%
!! TTAGAAAAACACATTGTTAA+TGG + Chr1:94159001-94159020 None:intergenic 20.0%
!! TTCATTCATATTAGATATGT+TGG + Chr1:94159392-94159411 None:intergenic 20.0%
!! TTTCACTAATTATAATGTGT+GGG - Chr1:94160681-94160700 MsG0180005623.01.T01:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+AGG - Chr1:94158735-94158754 MsG0180005623.01.T01:CDS 20.0%
!!! ATGTTGATGGAAAATTTTAT+AGG - Chr1:94158674-94158693 MsG0180005623.01.T01:CDS 20.0%
!!! CATTAGTCATTTACATTTTA+GGG - Chr1:94158504-94158523 MsG0180005623.01.T01:intron 20.0%
!!! CCTTGTTTTGTTTTTTTATT+AGG + Chr1:94160577-94160596 None:intergenic 20.0%
!!! GCTATATTTTAAAATAGGTT+GGG - Chr1:94160239-94160258 MsG0180005623.01.T01:intron 20.0%
!!! GTATAACAGTTTTAAAATGT+AGG + Chr1:94158810-94158829 None:intergenic 20.0%
!!! GTTGATGGAAAAATTTTATA+GGG - Chr1:94158644-94158663 MsG0180005623.01.T01:CDS 20.0%
!!! TCATTAGTCATTTACATTTT+AGG - Chr1:94158503-94158522 MsG0180005623.01.T01:intron 20.0%
!!! TGCATGCTATATTTTAAAAT+AGG - Chr1:94160234-94160253 MsG0180005623.01.T01:intron 20.0%
!!! TGCTATATTTTAAAATAGGT+TGG - Chr1:94160238-94160257 MsG0180005623.01.T01:intron 20.0%
!!! TGTTGATGGAAAAATTTTAT+AGG - Chr1:94158643-94158662 MsG0180005623.01.T01:CDS 20.0%
!!! TGTTGATGGAAAATTTTATA+GGG - Chr1:94158675-94158694 MsG0180005623.01.T01:CDS 20.0%
!!! TTTGTTTCTTTAATCAAACT+TGG - Chr1:94160117-94160136 MsG0180005623.01.T01:intron 20.0%
!!! TTTTAAAACTGTTATACTGT+TGG - Chr1:94158813-94158832 MsG0180005623.01.T01:CDS 20.0%
! AAAAACTACAATGATTCTGA+TGG - Chr1:94159088-94159107 MsG0180005623.01.T01:intron 25.0%
! AAAGAAATTACCACTTCATT+TGG + Chr1:94159844-94159863 None:intergenic 25.0%
! ACAAAACAAGGAAATCAAAT+TGG - Chr1:94160586-94160605 MsG0180005623.01.T01:CDS 25.0%
! AGAACAAGGATATTGTATTA+TGG - Chr1:94160939-94160958 MsG0180005623.01.T01:CDS 25.0%
! ATACAACAAAACTGAGAAAT+GGG - Chr1:94160711-94160730 MsG0180005623.01.T01:CDS 25.0%
! ATAGGGATTAAAAATGTTGA+TGG - Chr1:94158661-94158680 MsG0180005623.01.T01:CDS 25.0%
! ATATAGTCATGCTTGAAATT+TGG - Chr1:94160090-94160109 MsG0180005623.01.T01:intron 25.0%
! ATGAATTGAATTGAATGTGT+AGG - Chr1:94160903-94160922 MsG0180005623.01.T01:CDS 25.0%
! ATGATTTGAGGATTATGTTA+CGG + Chr1:94157294-94157313 None:intergenic 25.0%
! ATTGATGCTAAAGAAACTAT+TGG + Chr1:94159517-94159536 None:intergenic 25.0%
! ATTTCAAGCATGACTATATA+TGG + Chr1:94160089-94160108 None:intergenic 25.0%
! CAAAACAAGGAAATCAAATT+GGG - Chr1:94160587-94160606 MsG0180005623.01.T01:CDS 25.0%
! CAAAATTGTTAGGATGAAAT+TGG + Chr1:94157990-94158009 None:intergenic 25.0%
! CAAGATAATAGGTAAAGAAA+TGG + Chr1:94160375-94160394 None:intergenic 25.0%
! CATAATATTAGTATAAGGTC+TGG + Chr1:94158306-94158325 None:intergenic 25.0%
! CTTTCACTAATTATAATGTG+TGG - Chr1:94160680-94160699 MsG0180005623.01.T01:CDS 25.0%
! GTTAGAATGCAAGAAAAAAA+TGG + Chr1:94159182-94159201 None:intergenic 25.0%
! TAATCATCATTTACCAAAAG+TGG + Chr1:94160643-94160662 None:intergenic 25.0%
! TGAATTGAATTGAATGTGTA+GGG - Chr1:94160904-94160923 MsG0180005623.01.T01:CDS 25.0%
! TGTTAATTAAGAGTTTGAAG+AGG + Chr1:94159290-94159309 None:intergenic 25.0%
! TTCTTCAACGAATGTTTAAA+CGG + Chr1:94157601-94157620 None:intergenic 25.0%
!! AAACACATTATTAATGGGTA+TGG + Chr1:94159251-94159270 None:intergenic 25.0%
!! ACAATTTTCTTTGATCAGTT+GGG - Chr1:94159450-94159469 MsG0180005623.01.T01:intron 25.0%
!! CAATCTATGTAATTTTCTCA+GGG - Chr1:94161171-94161190 MsG0180005623.01.T01:CDS 25.0%
!! GTGAGAAATTGTTAATGTTT+TGG - Chr1:94160876-94160895 MsG0180005623.01.T01:CDS 25.0%
!! TCAATCTATGTAATTTTCTC+AGG - Chr1:94161170-94161189 MsG0180005623.01.T01:CDS 25.0%
!!! AAAGTGTGATTTTATTTTGC+AGG + Chr1:94158579-94158598 None:intergenic 25.0%
!!! AAGTGTGATTTTATTTTGCA+GGG + Chr1:94158578-94158597 None:intergenic 25.0%
!!! AATCAGACAACATTTTTTTG+TGG - Chr1:94158263-94158282 MsG0180005623.01.T01:intron 25.0%
!!! AATGTTGTCTGATTTTTTTG+TGG + Chr1:94158257-94158276 None:intergenic 25.0%
!!! TATCTTATTTTTGTGCTAAG+CGG + Chr1:94158879-94158898 None:intergenic 25.0%
!!! TTCTTTGATTTGATCTGTAT+TGG + Chr1:94160302-94160321 None:intergenic 25.0%
!!! TTTTTAAGGAACTTCAAACT+AGG + Chr1:94158382-94158401 None:intergenic 25.0%
AAATACTACATGCGTAATAG+TGG - Chr1:94159155-94159174 MsG0180005623.01.T01:intron 30.0%
AAGTTATTGGACTGTTGTAA+AGG - Chr1:94160480-94160499 MsG0180005623.01.T01:CDS 30.0%
AATACTACATGCGTAATAGT+GGG - Chr1:94159156-94159175 MsG0180005623.01.T01:intron 30.0%
AATGTCAAGGTCAAGATAAT+AGG + Chr1:94160386-94160405 None:intergenic 30.0%
AATTGCAATTCCAAATGAAG+TGG - Chr1:94159831-94159850 MsG0180005623.01.T01:intron 30.0%
ATATCTGTAAGTCAACATGA+TGG - Chr1:94157901-94157920 MsG0180005623.01.T01:CDS 30.0%
ATATTCACCACAATCAAAGT+AGG + Chr1:94159644-94159663 None:intergenic 30.0%
ATCCTTTGTATAGTACTTCA+CGG + Chr1:94159564-94159583 None:intergenic 30.0%
ATCTCAACAAAACTCTACAA+AGG - Chr1:94157508-94157527 MsG0180005623.01.T01:intron 30.0%
ATTGTATTATGGCACACAAT+GGG - Chr1:94160950-94160969 MsG0180005623.01.T01:CDS 30.0%
CAAATCAAAGAAGACATTCA+TGG - Chr1:94160310-94160329 MsG0180005623.01.T01:intron 30.0%
CAATACCTAGGAAAAGTTAT+TGG - Chr1:94160467-94160486 MsG0180005623.01.T01:intron 30.0%
CATACAACAAAACTGAGAAA+TGG - Chr1:94160710-94160729 MsG0180005623.01.T01:CDS 30.0%
CTTGATGAAATGAGAATTCT+TGG - Chr1:94157781-94157800 MsG0180005623.01.T01:CDS 30.0%
TACTGGTATATTAGGGATTA+AGG - Chr1:94160264-94160283 MsG0180005623.01.T01:intron 30.0%
TACTTTGATTGTGGTGAATA+TGG - Chr1:94159643-94159662 MsG0180005623.01.T01:intron 30.0%
TATTGTATTATGGCACACAA+TGG - Chr1:94160949-94160968 MsG0180005623.01.T01:CDS 30.0%
TGAAAGATCAAACAATACCT+AGG - Chr1:94160455-94160474 MsG0180005623.01.T01:intron 30.0%
TGAGCAAAGCCAAAATTTAA+TGG + Chr1:94160804-94160823 None:intergenic 30.0%
TGTAAGCTTAATAGTGAGAT+CGG - Chr1:94159963-94159982 MsG0180005623.01.T01:intron 30.0%
TGTAATACCATTCTTCACTT+GGG + Chr1:94159618-94159637 None:intergenic 30.0%
TGTAGGGTTAAATAAGTAAG+TGG + Chr1:94158793-94158812 None:intergenic 30.0%
TGTGATGCAACAAAATTGTT+AGG + Chr1:94158000-94158019 None:intergenic 30.0%
TTACTGATCAGATCGAATAT+GGG + Chr1:94161223-94161242 None:intergenic 30.0%
TTAGGGACTAAAAATGTTGA+TGG - Chr1:94158629-94158648 MsG0180005623.01.T01:CDS 30.0%
TTATATGTTGATCATAGCAG+AGG - Chr1:94160742-94160761 MsG0180005623.01.T01:CDS 30.0%
TTTACAAGACTATTACCTGA+CGG + Chr1:94157953-94157972 None:intergenic 30.0%
TTTACTGATCAGATCGAATA+TGG + Chr1:94161224-94161243 None:intergenic 30.0%
! AAGGTGAGTCCATTAAATTT+TGG - Chr1:94160792-94160811 MsG0180005623.01.T01:CDS 30.0%
! ACATTTTCCTTAAGCATCTT+AGG - Chr1:94158611-94158630 MsG0180005623.01.T01:CDS 30.0%
! CATTTTCCTTAAGCATCTTA+GGG - Chr1:94158612-94158631 MsG0180005623.01.T01:CDS 30.0%
! GACAATTTTCTTTGATCAGT+TGG - Chr1:94159449-94159468 MsG0180005623.01.T01:intron 30.0%
! GATCCTTCAAAATTTTCTTG+CGG + Chr1:94158145-94158164 None:intergenic 30.0%
! GTATTTTCAAATATCAGCTG+TGG + Chr1:94159141-94159160 None:intergenic 30.0%
! GTGAAGTGTTATTACAAGAA+TGG - Chr1:94157706-94157725 MsG0180005623.01.T01:CDS 30.0%
! TAATGTTGAAAAGTGCAGTT+GGG + Chr1:94161109-94161128 None:intergenic 30.0%
! TAATTTGTATGCAAGACCAT+TGG - Chr1:94157735-94157754 MsG0180005623.01.T01:CDS 30.0%
! TTATGACTATTGATTGTGTG+TGG - Chr1:94159917-94159936 MsG0180005623.01.T01:intron 30.0%
!! TAATTTCTGAAGGTGTTAGA+GGG + Chr1:94157264-94157283 None:intergenic 30.0%
!! TTAATTTCTGAAGGTGTTAG+AGG + Chr1:94157265-94157284 None:intergenic 30.0%
!!! AACATTTTTTTGTGGTGATC+GGG - Chr1:94158271-94158290 MsG0180005623.01.T01:intron 30.0%
!!! CAACATTTTTTTGTGGTGAT+CGG - Chr1:94158270-94158289 MsG0180005623.01.T01:intron 30.0%
!!! CATTTCTCAGTTTTGTTGTA+TGG + Chr1:94160712-94160731 None:intergenic 30.0%
!!! GGTGATTTTGTTTTAAGAAC+AGG + Chr1:94161070-94161089 None:intergenic 30.0%
!!! GTAGAGTTTTGTTGAGATTA+TGG + Chr1:94157506-94157525 None:intergenic 30.0%
!!! TCTGATTTTTTTGTGGTGAA+CGG + Chr1:94158250-94158269 None:intergenic 30.0%
!!! TGTTTTATGTGCTGCTTTTA+CGG - Chr1:94157642-94157661 MsG0180005623.01.T01:CDS 30.0%
AAAACAATCCCTCGAAATCA+TGG - Chr1:94157462-94157481 MsG0180005623.01.T01:CDS 35.0%
AAAAGTCTACCATGATTTCG+AGG + Chr1:94157474-94157493 None:intergenic 35.0%
AAAGTCTACCATGATTTCGA+GGG + Chr1:94157473-94157492 None:intergenic 35.0%
ACAAAACTCTACAAAGGACA+AGG - Chr1:94157514-94157533 MsG0180005623.01.T01:intron 35.0%
ACAGATATGCCTTTAAGCTT+TGG + Chr1:94157889-94157908 None:intergenic 35.0%
AGGAATATGACTGCATTCTA+TGG + Chr1:94157230-94157249 None:intergenic 35.0%
AGGATTCCTCTCAAAGAAAT+TGG + Chr1:94161050-94161069 None:intergenic 35.0%
ATTTCATCATGTTCCTTCTC+AGG - Chr1:94160973-94160992 MsG0180005623.01.T01:CDS 35.0%
ATTTGTCTTGACAAAGGAGT+TGG + Chr1:94160419-94160438 None:intergenic 35.0%
CGAATGTTTAAACGGTTCAT+AGG + Chr1:94157593-94157612 None:intergenic 35.0%
CTCCAAATTTGTCTTGACAA+AGG + Chr1:94160425-94160444 None:intergenic 35.0%
CTCCTTTGTCAAGACAAATT+TGG - Chr1:94160420-94160439 MsG0180005623.01.T01:intron 35.0%
CTTGAATGTCGAATCCTAAA+TGG + Chr1:94159489-94159508 None:intergenic 35.0%
GAATTGAATGTGTAGGGATA+GGG - Chr1:94160910-94160929 MsG0180005623.01.T01:CDS 35.0%
GATGATTATCCACAGATTAG+AGG - Chr1:94160655-94160674 MsG0180005623.01.T01:CDS 35.0%
GTATATTAGGGATTAAGGCA+GGG - Chr1:94160269-94160288 MsG0180005623.01.T01:intron 35.0%
GTGATGATACTTTAGCAGTT+TGG - Chr1:94160764-94160783 MsG0180005623.01.T01:CDS 35.0%
GTGTAATACCATTCTTCACT+TGG + Chr1:94159619-94159638 None:intergenic 35.0%
TACACAACCTACTTTGATTG+TGG - Chr1:94159634-94159653 MsG0180005623.01.T01:intron 35.0%
TATCTTGACCTTGACATTGA+TGG - Chr1:94160388-94160407 MsG0180005623.01.T01:intron 35.0%
TCCTAAATGGAAAACCCAAT+TGG + Chr1:94159476-94159495 None:intergenic 35.0%
TGAATTGAATGTGTAGGGAT+AGG - Chr1:94160909-94160928 MsG0180005623.01.T01:CDS 35.0%
TGCTTAAGGAAAATGTCACA+AGG + Chr1:94158607-94158626 None:intergenic 35.0%
TTAAACGGTTCATAGGTGAA+TGG + Chr1:94157586-94157605 None:intergenic 35.0%
TTAGGATTCGACATTCAAGT+TGG - Chr1:94159490-94159509 MsG0180005623.01.T01:intron 35.0%
TTCCTCTCAAAGAAATTGGT+TGG + Chr1:94161046-94161065 None:intergenic 35.0%
TTGGAACCTTACTATGACAA+AGG + Chr1:94157443-94157462 None:intergenic 35.0%
TTGGACTGTTGTAAAGGAAA+CGG - Chr1:94160486-94160505 MsG0180005623.01.T01:CDS 35.0%
TTGGGCTTACTGGTATATTA+GGG - Chr1:94160257-94160276 MsG0180005623.01.T01:intron 35.0%
TTGTCCTCGTAAGCTTAATT+CGG + Chr1:94158344-94158363 None:intergenic 35.0%
TTTACCACTAGTAACTCAGA+AGG + Chr1:94160553-94160572 None:intergenic 35.0%
TTTAGTCCCTAAGATGCTTA+AGG + Chr1:94158621-94158640 None:intergenic 35.0%
TTTCAAATATCAGCTGTGGT+TGG + Chr1:94159137-94159156 None:intergenic 35.0%
! AAACACATTGTTAATGGGTC+AGG + Chr1:94158995-94159014 None:intergenic 35.0%
! AACACATTGTTAATGGGTCA+GGG + Chr1:94158994-94159013 None:intergenic 35.0%
! ACAGTCCAATAACTTTTCCT+AGG + Chr1:94160475-94160494 None:intergenic 35.0%
! CTAATGTTGAAAAGTGCAGT+TGG + Chr1:94161110-94161129 None:intergenic 35.0%
! TACCGTGAAGTACTATACAA+AGG - Chr1:94159559-94159578 MsG0180005623.01.T01:intron 35.0%
! TGATTTCGAGGGATTGTTTT+TGG + Chr1:94157462-94157481 None:intergenic 35.0%
! TTAAAATAGGTTGGGCTTAC+TGG - Chr1:94160247-94160266 MsG0180005623.01.T01:intron 35.0%
!! GTTTGGTTTGGTATGATTTG+AGG + Chr1:94157306-94157325 None:intergenic 35.0%
!! TGCATTTTTGAGAAGTATGC+TGG - Chr1:94159784-94159803 MsG0180005623.01.T01:intron 35.0%
!!! AAGAGTTTTGGTTTTGGTGT+TGG + Chr1:94157401-94157420 None:intergenic 35.0%
!!! ACATTTTTTTGTGGTGATCG+GGG - Chr1:94158272-94158291 MsG0180005623.01.T01:intron 35.0%
!!! CTGATTTTTTTGTGGTGAAC+GGG + Chr1:94158249-94158268 None:intergenic 35.0%
!!! TGATTTTTTTGTGGTGAACG+GGG + Chr1:94158248-94158267 None:intergenic 35.0%
AAAAGTGAGGTTGTGGTGTT+TGG + Chr1:94157323-94157342 None:intergenic 40.0%
AACAAAACTGAGAAATGGGC+AGG - Chr1:94160715-94160734 MsG0180005623.01.T01:CDS 40.0%
AAGCAGAATAGTATGCGTCT+AGG + Chr1:94159729-94159748 None:intergenic 40.0%
AATCACCAAAGCCTATGCAT+TGG - Chr1:94161083-94161102 MsG0180005623.01.T01:CDS 40.0%
ACAAACCTCTCATCCAATCA+TGG - Chr1:94157368-94157387 MsG0180005623.01.T01:CDS 40.0%
ACTGATGCAAGAGTCAACAT+TGG - Chr1:94160520-94160539 MsG0180005623.01.T01:CDS 40.0%
ACTGGATAATCTTCCTGAGA+AGG + Chr1:94160989-94161008 None:intergenic 40.0%
AGTATGCTGGTGATATCATG+TGG - Chr1:94159797-94159816 MsG0180005623.01.T01:intron 40.0%
ATCCTACGTAGTGAAAAGTG+AGG + Chr1:94157336-94157355 None:intergenic 40.0%
ATGGTCATGATAGACACCAA+TGG + Chr1:94160356-94160375 None:intergenic 40.0%
CGGACAAGGTTAATTTCTGA+AGG + Chr1:94157274-94157293 None:intergenic 40.0%
GAATGGTAACTGTGATGCAA+TGG + Chr1:94157569-94157588 None:intergenic 40.0%
GACCAACCAATTTCTTTGAG+AGG - Chr1:94161041-94161060 MsG0180005623.01.T01:CDS 40.0%
GATTGTGGTGAATATGGCTT+TGG - Chr1:94159649-94159668 MsG0180005623.01.T01:intron 40.0%
GCATACTATTCTGCTTCAGA+TGG - Chr1:94159733-94159752 MsG0180005623.01.T01:intron 40.0%
GGTATATTAGGGATTAAGGC+AGG - Chr1:94160268-94160287 MsG0180005623.01.T01:intron 40.0%
GTCAAGCCTTTGTCATAGTA+AGG - Chr1:94157434-94157453 MsG0180005623.01.T01:CDS 40.0%
GTTCACCAAAGGTAAGGATA+GGG + Chr1:94157543-94157562 None:intergenic 40.0%
GTTGGGCTTACTGGTATATT+AGG - Chr1:94160256-94160275 MsG0180005623.01.T01:intron 40.0%
TAAGCCTTCTGAGTTACTAG+TGG - Chr1:94160546-94160565 MsG0180005623.01.T01:CDS 40.0%
TGAGGATTATGTTACGGACA+AGG + Chr1:94157288-94157307 None:intergenic 40.0%
TGATTGGATGAGAGGTTTGT+CGG + Chr1:94157368-94157387 None:intergenic 40.0%
TGTTCACCAAAGGTAAGGAT+AGG + Chr1:94157544-94157563 None:intergenic 40.0%
TTGCTAGCTGATAACACCAT+TGG - Chr1:94160337-94160356 MsG0180005623.01.T01:intron 40.0%
TTGTATGCAAGACCATTGGA+GGG - Chr1:94157739-94157758 MsG0180005623.01.T01:CDS 40.0%
TTTGATCAGTTGGGCCAATT+GGG - Chr1:94159459-94159478 MsG0180005623.01.T01:intron 40.0%
TTTGTATGCAAGACCATTGG+AGG - Chr1:94157738-94157757 MsG0180005623.01.T01:CDS 40.0%
! ACATAAGAGCATGAGGAGAA+AGG + Chr1:94157203-94157222 None:intergenic 40.0%
! CTCAATTGTGCATCCACTTT+TGG - Chr1:94160627-94160646 MsG0180005623.01.T01:CDS 40.0%
! CTTTAGCAGTTTGGAGTCTA+AGG - Chr1:94160773-94160792 MsG0180005623.01.T01:CDS 40.0%
! GAGCCGCAAGAAAATTTTGA+AGG - Chr1:94158139-94158158 MsG0180005623.01.T01:CDS 40.0%
! GCCAATTGGGTTTTCCATTT+AGG - Chr1:94159472-94159491 MsG0180005623.01.T01:intron 40.0%
! TGGAGTTACATAAGAGCATG+AGG + Chr1:94157210-94157229 None:intergenic 40.0%
!! AACCTCACTTTTCACTACGT+AGG - Chr1:94157331-94157350 MsG0180005623.01.T01:CDS 40.0%
!! CCTTTAAGCTTTGGACCAAA+CGG + Chr1:94157880-94157899 None:intergenic 40.0%
!! TGCAATGGTTTGTTCACCAA+AGG + Chr1:94157554-94157573 None:intergenic 40.0%
!! TGGTTTGTTCACCAAAGGTA+AGG + Chr1:94157549-94157568 None:intergenic 40.0%
!!! AGTTTTGGTTTTGGTGTTGG+AGG + Chr1:94157398-94157417 None:intergenic 40.0%
!!! TGGAGGAAGAGTTTTGGTTT+TGG + Chr1:94157407-94157426 None:intergenic 40.0%
!!! TTATGTGCTGCTTTTACGGT+AGG - Chr1:94157646-94157665 MsG0180005623.01.T01:CDS 40.0%
AAAACTGAGAAATGGGCAGG+AGG - Chr1:94160718-94160737 MsG0180005623.01.T01:CDS 45.0%
AAGTGGTAGCATCAAGCTTG+GGG - Chr1:94160035-94160054 MsG0180005623.01.T01:intron 45.0%
ACCAAGACCCAAGTGAAGAA+TGG - Chr1:94159608-94159627 MsG0180005623.01.T01:intron 45.0%
ACCATTCTTCACTTGGGTCT+TGG + Chr1:94159612-94159631 None:intergenic 45.0%
ACTATGACAAAGGCTTGACG+AGG + Chr1:94157433-94157452 None:intergenic 45.0%
ATTCCAGTGCCAAAAGCTGA+AGG - Chr1:94157823-94157842 MsG0180005623.01.T01:CDS 45.0%
CAAGTGGTAGCATCAAGCTT+GGG - Chr1:94160034-94160053 MsG0180005623.01.T01:intron 45.0%
CAATTGAGCCTGGAAGCAAA+CGG + Chr1:94160615-94160634 None:intergenic 45.0%
CCGTTTGGTCCAAAGCTTAA+AGG - Chr1:94157877-94157896 MsG0180005623.01.T01:CDS 45.0%
CGTAGTGAAAAGTGAGGTTG+TGG + Chr1:94157330-94157349 None:intergenic 45.0%
CTTTGATCAGTTGGGCCAAT+TGG - Chr1:94159458-94159477 MsG0180005623.01.T01:intron 45.0%
GATAGCCATGATTGGATGAG+AGG + Chr1:94157376-94157395 None:intergenic 45.0%
GATTGGATGAGAGGTTTGTC+GGG + Chr1:94157367-94157386 None:intergenic 45.0%
GATTGGGAGTTTAAGCCAAG+TGG - Chr1:94160018-94160037 MsG0180005623.01.T01:intron 45.0%
GGATAGGGAGATTGAGAACA+AGG - Chr1:94160925-94160944 MsG0180005623.01.T01:CDS 45.0%
TCAAATCCACCACTCAACGT+AGG + Chr1:94161016-94161035 None:intergenic 45.0%
TCAGCCGAATTAAGCTTACG+AGG - Chr1:94158337-94158356 MsG0180005623.01.T01:intron 45.0%
TCTTCACTTGGGTCTTGGTA+TGG + Chr1:94159607-94159626 None:intergenic 45.0%
TGAGGTTGTGGTGTTTGGTT+TGG + Chr1:94157318-94157337 None:intergenic 45.0%
TGGCTTCACCATCAATGTCA+AGG + Chr1:94160399-94160418 None:intergenic 45.0%
TGTTGGAGGATAGCCATGAT+TGG + Chr1:94157384-94157403 None:intergenic 45.0%
TTCCAGTGCCAAAAGCTGAA+GGG - Chr1:94157824-94157843 MsG0180005623.01.T01:CDS 45.0%
TTGGCAGGACAATCTGTGAA+AGG + Chr1:94159697-94159716 None:intergenic 45.0%
TTGTGTGTGGCAGATAACTG+AGG - Chr1:94159930-94159949 MsG0180005623.01.T01:intron 45.0%
! AAGGTGTTAGAGGGTCAAGT+GGG + Chr1:94157255-94157274 None:intergenic 45.0%
! AGTGAGATCGGTTTCAACTG+TGG - Chr1:94159975-94159994 MsG0180005623.01.T01:intron 45.0%
! GTGAGATCGGTTTCAACTGT+GGG - Chr1:94159976-94159995 MsG0180005623.01.T01:intron 45.0%
! TACTCAGTCCCTTCAGCTTT+TGG + Chr1:94157835-94157854 None:intergenic 45.0%
! TCTAAGATGAAGCCACCGTT+TGG - Chr1:94157862-94157881 MsG0180005623.01.T01:CDS 45.0%
!! GTAAGTCAACATGATGGACC+TGG - Chr1:94157907-94157926 MsG0180005623.01.T01:CDS 45.0%
!! GTGAAAGCACCTCTAATCTG+TGG + Chr1:94160667-94160686 None:intergenic 45.0%
!! TTAAGCTTTGGACCAAACGG+TGG + Chr1:94157877-94157896 None:intergenic 45.0%
!!! GCTTTTACGGTAGGTTGGTT+TGG - Chr1:94157655-94157674 MsG0180005623.01.T01:CDS 45.0%
AGTGGATGCACAATTGAGCC+TGG + Chr1:94160625-94160644 None:intergenic 50.0%
ATGACAAAGGCTTGACGAGG+TGG + Chr1:94157430-94157449 None:intergenic 50.0%
ATTACCTGACGGAGTGACCT+TGG + Chr1:94157942-94157961 None:intergenic 50.0%
CCAAGCTTGATGCTACCACT+TGG + Chr1:94160036-94160055 None:intergenic 50.0%
CCAAGTGGTAGCATCAAGCT+TGG - Chr1:94160033-94160052 MsG0180005623.01.T01:intron 50.0%
GGCTACCCTATCCTTACCTT+TGG - Chr1:94157535-94157554 MsG0180005623.01.T01:intron 50.0%
GTAGCATCAAGCTTGGGGTA+TGG - Chr1:94160040-94160059 MsG0180005623.01.T01:intron 50.0%
TGACCTTGGATGGTGAAACC+AGG + Chr1:94157928-94157947 None:intergenic 50.0%
TGCGTCTAGGAAGACAGCAT+TGG + Chr1:94159716-94159735 None:intergenic 50.0%
TGTGGCAGATAACTGAGGTC+AGG - Chr1:94159935-94159954 MsG0180005623.01.T01:intron 50.0%
TTGGGCCAATGCATAGGCTT+TGG + Chr1:94161091-94161110 None:intergenic 50.0%
! ATTGGGTACCGTTTGCTTCC+AGG - Chr1:94160604-94160623 MsG0180005623.01.T01:CDS 50.0%
!! GAAGGTGTTAGAGGGTCAAG+TGG + Chr1:94157256-94157275 None:intergenic 50.0%
!! TACGGTAGGTTGGTTTGGAG+AGG - Chr1:94157660-94157679 MsG0180005623.01.T01:CDS 50.0%
!! TCTAGGAAGACAGCATTGGC+AGG + Chr1:94159712-94159731 None:intergenic 50.0%
!!! AGGTGGTGGAGGAAGAGTTT+TGG + Chr1:94157413-94157432 None:intergenic 50.0%
!!! GTGCTGCTTTTACGGTAGGT+TGG - Chr1:94157650-94157669 MsG0180005623.01.T01:CDS 50.0%
ACAAAGGCTTGACGAGGTGG+TGG + Chr1:94157427-94157446 None:intergenic 55.0%
CCACTCAACGTAGGCATGAC+TGG + Chr1:94161007-94161026 None:intergenic 55.0%
CCAGTCATGCCTACGTTGAG+TGG - Chr1:94161004-94161023 MsG0180005623.01.T01:CDS 55.0%
GGACCTGGTTTCACCATCCA+AGG - Chr1:94157922-94157941 MsG0180005623.01.T01:CDS 55.0%
GTCATGCCTACGTTGAGTGG+TGG - Chr1:94161007-94161026 MsG0180005623.01.T01:CDS 55.0%
GTGCAGTTGGGCCAATGCAT+AGG + Chr1:94161097-94161116 None:intergenic 55.0%
GTTAGAGGGTCAAGTGGGTG+AGG + Chr1:94157250-94157269 None:intergenic 55.0%
TGCAAGACCATTGGAGGGTG+TGG - Chr1:94157744-94157763 MsG0180005623.01.T01:CDS 55.0%
! GTCCCTTCAGCTTTTGGCAC+TGG + Chr1:94157829-94157848 None:intergenic 55.0%
ACAGCTGCCACACCCTCCAA+TGG + Chr1:94157754-94157773 None:intergenic 60.0%
CCATCCAAGGTCACTCCGTC+AGG - Chr1:94157935-94157954 MsG0180005623.01.T01:CDS 60.0%
CCTGACGGAGTGACCTTGGA+TGG + Chr1:94157938-94157957 None:intergenic 60.0%
! AAGGCTTGACGAGGTGGTGG+AGG + Chr1:94157424-94157443 None:intergenic 60.0%
! ATTGGAGGGTGTGGCAGCTG+TGG - Chr1:94157753-94157772 MsG0180005623.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 94157178 94161247 94157178 ID=MsG0180005623.01;Name=MsG0180005623.01
Chr1 mRNA 94157178 94161247 94157178 ID=MsG0180005623.01.T01;Parent=MsG0180005623.01;Name=MsG0180005623.01.T01;_AED=0.28;_eAED=0.28;_QI=0|1|0.8|1|1|1|5|118|673
Chr1 exon 94157178 94157500 94157178 ID=MsG0180005623.01.T01:exon:19154;Parent=MsG0180005623.01.T01
Chr1 exon 94157631 94158169 94157631 ID=MsG0180005623.01.T01:exon:19153;Parent=MsG0180005623.01.T01
Chr1 exon 94158369 94158482 94158369 ID=MsG0180005623.01.T01:exon:19152;Parent=MsG0180005623.01.T01
Chr1 exon 94158573 94158957 94158573 ID=MsG0180005623.01.T01:exon:19151;Parent=MsG0180005623.01.T01
Chr1 exon 94160469 94161247 94160469 ID=MsG0180005623.01.T01:exon:19150;Parent=MsG0180005623.01.T01
Chr1 CDS 94160469 94161247 94160469 ID=MsG0180005623.01.T01:cds;Parent=MsG0180005623.01.T01
Chr1 CDS 94158573 94158957 94158573 ID=MsG0180005623.01.T01:cds;Parent=MsG0180005623.01.T01
Chr1 CDS 94158369 94158482 94158369 ID=MsG0180005623.01.T01:cds;Parent=MsG0180005623.01.T01
Chr1 CDS 94157631 94158169 94157631 ID=MsG0180005623.01.T01:cds;Parent=MsG0180005623.01.T01
Chr1 CDS 94157296 94157500 94157296 ID=MsG0180005623.01.T01:cds;Parent=MsG0180005623.01.T01
Chr1 three_prime_UTR 94157178 94157295 94157178 ID=MsG0180005623.01.T01:three_prime_utr;Parent=MsG0180005623.01.T01
Gene Sequence

>MsG0180005623.01.T01

ATGAAGATGAAGTTGATATTCTCCTTTCTCCTCATGCTCTTATGTAACTCCATAGAATGCAGTCATATTCCTCACCCACTTGACCCTCTAACACCTTCAGAAATTAACCTTGTCCGTAACATAATCCTCAAATCATACCAAACCAAACACCACAACCTCACTTTTCACTACGTAGGATTGCAAGAACCCGACAAACCTCTCATCCAATCATGGCTATCCTCCAACACCAAAACCAAAACTCTTCCTCCACCACCTCGTCAAGCCTTTGTCATAGTAAGGTTCCAAAAACAATCCCTCGAAATCATGGTAGACTTTTCAACTCGTTCCATAATCTCAACAAAACTCTACAAAGGACAAGGCTACCCTATCCTTACCTTTGGTGAACAAACCATTGCATCACAGTTACCATTCACCTATGAACCGTTTAAACATTCGTTGAAGAAAAGAAATATTAACATATCTAATGTTTTATGTGCTGCTTTTACGGTAGGTTGGTTTGGAGAGGAAAAGAGTAAAAGAACAGTGAAAGTGAAGTGTTATTACAAGAATGGTTCTGCTAATTTGTATGCAAGACCATTGGAGGGTGTGGCAGCTGTGGTTGATCTTGATGAAATGAGAATTCTTGGTTATTCTGATAGACATGTGATTCCAGTGCCAAAAGCTGAAGGGACTGAGTATCGAGCTTCTAAGATGAAGCCACCGTTTGGTCCAAAGCTTAAAGGCATATCTGTAAGTCAACATGATGGACCTGGTTTCACCATCCAAGGTCACTCCGTCAGTTGGGCCAATTGGGTTTTCCATTTAGGATTCGACATTCAAGTTGGTCCAATAGTTTCTTTAGCATCAATTTATGATCTAGAAAATCAGAAATACCGTGAAGTACTATACAAAGGATTCATATCAGAAGTGTTTGTACCATACCAAGACCCAAGTGAAGAATGGTATTACACAACCTACTTTGATTGTGGTGAATATGGCTTTGGACAGACTATGTCTTCATTACAACCTTTCACAGATTGTCCTGCCAATGCTGTCTTCCTAGACGCATACTATTCTGCTTCAGATGGTACTTCTGTTAAGATATCTAATGCTTTTTGCATTTTTGAGAAGTATGCTGGTGATATCATGTGGCGTCACACAGAAATTGCAATTCCAAATGAAGTGATAACTGAGGTCAGGTCAGATGTAAGCTTAATAGTGAGATCGGTTTCAACTGTGGGAAACTATGATTATGTTATAGATTGGGAGTTTAAGCCAAGTGGTAGCATCAAGCTTGGGGTTGGGCTTACTGGTATATTAGGGATTAAGGCAGGGACATATACCAATACAGATCAAATCAAAGAAGACATTCATGGCACATTGCTAGCTGATAACACCATTGGTGTCTATCATGACCATTTCTTTACCTATTATCTTGACCTTGACATTGATGGTGAAGCCAACTCCTTTGTCAAGACAAATTTGGAGACTGTAAGAGTGAAAGATCAAACAATACCTAGGAAAAGTTATTGGACTGTTGTAAAGGAAACGGCTAAAACAGAAACTGATGCAAGAGTCAACATTGGTTTTAAGCCTTCTGAGTTACTAGTGGTAAATCCTAATAAAAAAACAAAACAAGGAAATCAAATTGGGTACCGTTTGCTTCCAGGCTCAATTGTGCATCCACTTTTGGTAAATGATGATTATCCACAGATTAGAGGTGCTTTCACTAATTATAATGTGTGGGTCACACCATACAACAAAACTGAGAAATGGGCAGGAGGATTATATGTTGATCATAGCAGAGGTGATGATACTTTAGCAGTTTGGAGTCTAAGGGATAGGGAGATTGAGAACAAGGATATTGTATTATGGCACACAATGGGATTTCATCATGTTCCTTCTCAGGAAGATTATCCAGTCATGCCTACGTTGAGTGGTGGATTTGAGCTTAGACCAACCAATTTCTTTGAGAGGAATCCTGTTCTTAAAACAAAATCACCAAAGCCTATGCATTGGCCCAACTGCACTTTTCAACATTAG
Protein sequence

>MsG0180005623.01.T01

MKMKLIFSFLLMLLCNSIECSHIPHPLDPLTPSEINLVRNIILKSYQTKHHNLTFHYVGLQEPDKPLIQSWLSSNTKTKTLPPPPRQAFVIVRFQKQSLEIMVDFSTRSIISTKLYKGQGYPILTFGEQTIASQLPFTYEPFKHSLKKRNINISNVLCAAFTVGWFGEEKSKRTVKVKCYYKNGSANLYARPLEGVAAVVDLDEMRILGYSDRHVIPVPKAEGTEYRASKMKPPFGPKLKGISVSQHDGPGFTIQGHSVSWANWVFHLGFDIQVGPIVSLASIYDLENQKYREVLYKGFISEVFVPYQDPSEEWYYTTYFDCGEYGFGQTMSSLQPFTDCPANAVFLDAYYSASDGTSVKISNAFCIFEKYAGDIMWRHTEIAIPNEVITEVRSDVSLIVRSVSTVGNYDYVIDWEFKPSGSIKLGVGLTGILGIKAGTYTNTDQIKEDIHGTLLADNTIGVYHDHFFTYYLDLDIDGEANSFVKTNLETVRVKDQTIPRKSYWTVVKETAKTETDARVNIGFKPSELLVVNPNKKTKQGNQIGYRLLPGSIVHPLLVNDDYPQIRGAFTNYNVWVTPYNKTEKWAGGLYVDHSRGDDTLAVWSLRDREIENKDIVLWHTMGFHHVPSQEDYPVMPTLSGGFELRPTNFFERNPVLKTKSPKPMHWPNCTFQH*