AlfalfaGEDB | MsG0880045595.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045595.01

KEGG: K00472
GO: GO:0003676 GO:0005506 GO:0016491 GO:0016705 GO:0031418 GO:0055114
PFAM: PF00076 PF13640

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045595.01.T01	XP_003629227.2	98.63	219	3	0	64	282	52	270	3.90E-147	434

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045595.01.T01	F4JZ24	78.142	183	40	0	303	485	95	277	3.95E-102	312

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045595.01.T01	I3T029	98.630	219	3	0	64	282	52	270	1.86e-147	434

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380017568.01	MsG0880045595.01	0.801855	7.395444e-49	3.569325e-46
MsG0480023936.01	MsG0880045595.01	0.826403	2.765742e-54	2.591219e-51
MsG0580024928.01	MsG0880045595.01	0.807078	6.026182e-50	3.325031e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045595.01.T01	MTR_8g074790	98.630	219	3	0	64	282	52	270	5.93e-151	433
MsG0880045595.01.T01	MTR_8g074810	97.268	183	5	0	303	485	84	266	3.68e-128	375
MsG0880045595.01.T01	MTR_8g074890	85.792	183	26	0	303	485	83	265	2.78e-112	335
MsG0880045595.01.T01	MTR_5g022960	83.607	183	30	0	303	485	95	277	4.97e-108	325
MsG0880045595.01.T01	MTR_8g074880	82.418	182	32	0	303	484	132	313	4.86e-106	321
MsG0880045595.01.T01	MTR_8g074830	79.121	182	38	0	304	485	88	269	1.03e-102	310
MsG0880045595.01.T01	MTR_3g114670	75.956	183	44	0	303	485	86	268	4.36e-101	306
MsG0880045595.01.T01	MTR_8g074870	75.956	183	30	2	303	485	45	213	2.62e-94	287
MsG0880045595.01.T01	MTR_5g023060	64.789	213	33	3	73	282	130	303	1.68e-77	246
MsG0880045595.01.T01	MTR_3g114590	56.087	230	87	3	303	532	81	296	4.39e-74	246

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045595.01.T01	AT5G66060	78.142	183	40	0	303	485	95	277	4.03e-103	312
MsG0880045595.01.T01	AT1G20270	77.049	183	42	0	303	485	93	275	2.34e-102	310
MsG0880045595.01.T01	AT2G17720	75.956	183	44	0	303	485	97	279	1.43e-99	303
MsG0880045595.01.T01	AT4G35810	76.503	183	43	0	303	485	97	279	1.02e-97	298
MsG0880045595.01.T01	AT4G35810	76.503	183	43	0	303	485	97	279	1.02e-97	298
MsG0880045595.01.T01	AT5G66060	73.973	146	38	0	300	445	90	235	7.09e-73	232
MsG0880045595.01.T01	AT3G28480	53.804	184	78	2	305	485	75	254	5.92e-65	214
MsG0880045595.01.T01	AT5G18900	55.676	185	80	1	303	485	54	238	1.63e-64	213
MsG0880045595.01.T01	AT3G06300	50.481	208	96	3	303	506	55	259	5.34e-62	206
MsG0880045595.01.T01	AT3G28490	54.054	185	77	3	305	485	51	231	3.58e-61	203

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Find 144 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTCACCCAATGCTGGG+AGG	0.700528	8:+61522766	MsG0880045595.01.T01:CDS
AACGCTGTGGTGAATGATCG+TGG	0.649760	8:-61517072	None:intergenic
AACTAACCGTGCAAACTTGA+TGG	0.329960	8:-61521420	None:intergenic
AAGCAAAACCACGAGAAATT+CGG	0.345373	8:-61515822	None:intergenic
AATGTTCTCCATTATGAAGT+TGG	0.413168	8:+61521034	MsG0880045595.01.T01:CDS
ACAACGTTCAGCATCCTCAT+GGG	0.618967	8:-61515860	None:intergenic
ACAGTGTTCCCAGCTGCCAA+GGG	0.582222	8:+61521273	MsG0880045595.01.T01:CDS
ACAGTTCAGATGTTGAAGAA+GGG	0.554647	8:+61521244	MsG0880045595.01.T01:intron
ACCTCATTTAGACTACTTTG+CGG	0.479167	8:+61521069	MsG0880045595.01.T01:CDS
ACTACCGAGGTGATCGGGGT+AGG	0.618280	8:+61516978	MsG0880045595.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATCTGCATAAGATTG+TGG	+	Chr8:61522241-61522260	MsG0880045595.01.T01:intron	30.0%
AAAGGTTAACCATCAATGAA+GGG	-	Chr8:61520667-61520686	None:intergenic	30.0%
AAAGTTGAAAGTGAATACTG+AGG	-	Chr8:61516182-61516201	None:intergenic	30.0%
AAATTGAACTTCAAGAATGG+TGG	-	Chr8:61517846-61517865	None:intergenic	30.0%
AAGTGAATGCTGAATTTGTA+AGG	-	Chr8:61516356-61516375	None:intergenic	30.0%
AATGTTCTCCATTATGAAGT+TGG	+	Chr8:61521034-61521053	MsG0880045595.01.T01:CDS	30.0%
ACATACAATCTAAGCATCAA+AGG	-	Chr8:61520939-61520958	None:intergenic	30.0%
ACTAAACATAGCAACTATGT+TGG	+	Chr8:61516141-61516160	MsG0880045595.01.T01:intron	30.0%
ACTTTCAATTAAGCCAAAGA+TGG	+	Chr8:61521350-61521369	MsG0880045595.01.T01:CDS	30.0%
AGAATATAGATGAGAAAGAG+AGG	-	Chr8:61519614-61519633	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	61515133	61522890	61515133	ID=MsG0880045595.01;Name=MsG0880045595.01
Chr8	mRNA	61515133	61522890	61515133	ID=MsG0880045595.01.T01;Parent=MsG0880045595.01;Name=MsG0880045595.01.T01;_AED=0.45;_eAED=0.48;_QI=0\|0.33\|0.23\|0.84\|1\|1\|13\|0\|541
Chr8	exon	61515133	61515307	61515133	ID=MsG0880045595.01.T01:exon:12725;Parent=MsG0880045595.01.T01
Chr8	exon	61515450	61515468	61515450	ID=MsG0880045595.01.T01:exon:12726;Parent=MsG0880045595.01.T01
Chr8	exon	61515580	61515682	61515580	ID=MsG0880045595.01.T01:exon:12727;Parent=MsG0880045595.01.T01
Chr8	exon	61515787	61515936	61515787	ID=MsG0880045595.01.T01:exon:12728;Parent=MsG0880045595.01.T01
Chr8	exon	61516687	61516756	61516687	ID=MsG0880045595.01.T01:exon:12729;Parent=MsG0880045595.01.T01
Chr8	exon	61516858	61517185	61516858	ID=MsG0880045595.01.T01:exon:12730;Parent=MsG0880045595.01.T01
Chr8	exon	61518806	61518866	61518806	ID=MsG0880045595.01.T01:exon:12731;Parent=MsG0880045595.01.T01
Chr8	exon	61520465	61520562	61520465	ID=MsG0880045595.01.T01:exon:12732;Parent=MsG0880045595.01.T01
Chr8	exon	61520713	61520810	61520713	ID=MsG0880045595.01.T01:exon:12733;Parent=MsG0880045595.01.T01
Chr8	exon	61521017	61521146	61521017	ID=MsG0880045595.01.T01:exon:12734;Parent=MsG0880045595.01.T01
Chr8	exon	61521248	61521435	61521248	ID=MsG0880045595.01.T01:exon:12735;Parent=MsG0880045595.01.T01
Chr8	exon	61521547	61521577	61521547	ID=MsG0880045595.01.T01:exon:12736;Parent=MsG0880045595.01.T01
Chr8	exon	61522716	61522890	61522716	ID=MsG0880045595.01.T01:exon:12737;Parent=MsG0880045595.01.T01
Chr8	CDS	61515133	61515307	61515133	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61515450	61515468	61515450	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61515580	61515682	61515580	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61515787	61515936	61515787	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61516687	61516756	61516687	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61516858	61517185	61516858	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61518806	61518866	61518806	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61520465	61520562	61520465	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61520713	61520810	61520713	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61521017	61521146	61521017	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61521248	61521435	61521248	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61521547	61521577	61521547	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01
Chr8	CDS	61522716	61522890	61522716	ID=MsG0880045595.01.T01:cds;Parent=MsG0880045595.01.T01

Gene Sequence

>MsG0880045595.01.T01

ATGTTTAATTTGGGTTCAACTCACACTGAAGCTATTTTTCTTTCTGGGCATGGTTGTATTTCAGGAATTCAAGGTCCCCTTCACCTTCACCATGGAAAGCTCAATCGAGATCTAGATCAAGGTCGAGGTCTGTTCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGGAGGTCAATGCTACAAATCCTGGTAATACACTATATGTTACCGGTCTATCTTCAAGGGTCACCGACAGAGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCATGAGGATGCTGAACGTTGTATCAAGCATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGACACTATCTTGGGCTGAAAAATACTAGAGACTATGGCCCTCGTGGTGATCATCGCAGTGACCATCGTGGCGACTTTCGTGGTGACCATCGTGGCGACTTTCGTGGTGATCATCGTGGCGACTATCGCAGTGACCATCGTGGTGACTATCGCGGTGACTACCGAGGTGATCGGGGTAGGAATCGTGGTGGTTCTGGTCGTGCAGATTATTCTGATCGTAGGTCTCCAAGGCGTTCACCATACCGTGGAGGCCACGATCATTCACCACAGCGTTCACCCTACGTTGGGAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCCCGTTCTCCTTATAGCCCAGACAGGAGGTATGCTGCTGGATCTAGACTTAAATCGTTAGAATACTTTGGAGTGTCTAAAGGAGTCAAAGATGTTAATTACGGCAGGACAAAGAAGGAATGCGAACATCTAATCAATACAGCCAAGCCAAGTATGCAAAAATCATCTGTTGTTGATAATGAAACAGGAAAGAGTAAGGATAGCAGCGTACGAACAAGCTCTGGAACTTTTCTTGATAGAGGAGGTGATGAAATTGTGAGGAATATTGAGAAAAGAATCGCTGATTTTACTTTTATACCTGTAGAGCACGGTGAAAGCTTTAATGTTCTCCATTATGAAGTTGGACAAAAGTACGAACCTCATTTAGACTACTTTGCGGATGATTTTAATATTGTGAATGGAGGTCAGCGTATAGCAACAATGCTGATGTACCTTTCAGATGTTGAAGAAGGGGGTGAGACAGTGTTCCCAGCTGCCAAGGGGAATATTAGCTCTGTGCCTTGGTGGAATGAGCTTTCGGATTGTGGAAAAAAAGGACTTTCAATTAAGCCAAAGATGGGTGATGCATTACTTTTTTGGAGCATGAAGCCAGATGGAACTTTAGATCCATCAAGTTTGCACGGTGCTTGTCCTGTGATCAAGGGTGATAAGTGGTCTCCAAGGAGTTCACCGTATTGTTGCAGTGGCTATGATAAATCACTACAACAGTCACCCAATGCTGGGAGGTCTAGAAGGGAGACATATGTTAGAAACTGTGTTATGAAACTGCTAAAAATACTTGAACAAGAAGATGAAGAACACGATGATGGTTGCACAAATAAGTTTTAA

Protein sequence

>MsG0880045595.01.T01

MFNLGSTHTEAIFLSGHGCISGIQGPLHLHHGKLNRDLDQGRGLFQDKGQDPTPEAVADQGLEVLEVNATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGPRGDHRSDHRGDFRGDHRGDFRGDHRGDYRSDHRGDYRGDYRGDRGRNRGGSGRADYSDRRSPRRSPYRGGHDHSPQRSPYVGRSRRERSRSIPRSPYSPDRRYAAGSRLKSLEYFGVSKGVKDVNYGRTKKECEHLINTAKPSMQKSSVVDNETGKSKDSSVRTSSGTFLDRGGDEIVRNIEKRIADFTFIPVEHGESFNVLHYEVGQKYEPHLDYFADDFNIVNGGQRIATMLMYLSDVEEGGETVFPAAKGNISSVPWWNELSDCGKKGLSIKPKMGDALLFWSMKPDGTLDPSSLHGACPVIKGDKWSPRSSPYCCSGYDKSLQQSPNAGRSRRETYVRNCVMKLLKILEQEDEEHDDGCTNKF*