Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045610.01.T01 | AFK48298.1 | 95.322 | 171 | 1 | 1 | 15 | 185 | 34 | 197 | 1.20E-112 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045610.01.T01 | Q35638 | 95.322 | 171 | 1 | 1 | 15 | 185 | 34 | 197 | 1.54E-115 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045610.01.T01 | I3T706 | 95.322 | 171 | 1 | 1 | 15 | 185 | 34 | 197 | 5.74e-113 | 329 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049059.01 | MsG0880045610.01 | 0.832243 | 1.056382e-55 | 1.173823e-52 |
| MsG0880041883.01 | MsG0880045610.01 | 0.836194 | 1.079610e-56 | 1.350831e-53 |
| MsG0480022481.01 | MsG0880045610.01 | 0.809682 | 1.676910e-50 | 9.910034e-48 |
| MsG0380018060.01 | MsG0880045610.01 | 0.830957 | 2.191515e-55 | 2.344422e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045610.01.T01 | MTR_8g075240 | 95.322 | 171 | 1 | 1 | 15 | 185 | 34 | 197 | 1.50e-116 | 329 |
| MsG0880045610.01.T01 | MTR_5g022600 | 92.398 | 171 | 6 | 1 | 15 | 185 | 34 | 197 | 3.90e-113 | 320 |
| MsG0880045610.01.T01 | MTR_4g073250 | 84.795 | 171 | 19 | 1 | 15 | 185 | 34 | 197 | 4.54e-106 | 302 |
| MsG0880045610.01.T01 | MTR_3g078260 | 69.399 | 183 | 46 | 3 | 1 | 182 | 24 | 197 | 5.25e-92 | 267 |
| MsG0880045610.01.T01 | MTR_4g088055 | 75.301 | 166 | 32 | 2 | 1 | 166 | 22 | 178 | 3.65e-89 | 259 |
| MsG0880045610.01.T01 | MTR_2g090875 | 74.096 | 166 | 34 | 2 | 1 | 166 | 22 | 178 | 1.18e-88 | 258 |
| MsG0880045610.01.T01 | MTR_6g087980 | 66.129 | 186 | 51 | 3 | 1 | 183 | 22 | 198 | 3.69e-86 | 252 |
| MsG0880045610.01.T01 | MTR_3g078260 | 77.885 | 104 | 21 | 1 | 1 | 104 | 24 | 125 | 1.11e-56 | 176 |
| MsG0880045610.01.T01 | MTR_7g103070 | 27.869 | 183 | 109 | 5 | 1 | 180 | 32 | 194 | 1.25e-16 | 74.7 |
| MsG0880045610.01.T01 | MTR_8g093740 | 27.869 | 183 | 108 | 5 | 1 | 180 | 29 | 190 | 2.60e-16 | 73.9 |
| MsG0880045610.01.T01 | MTR_3g096350 | 26.776 | 183 | 110 | 5 | 1 | 180 | 28 | 189 | 1.28e-15 | 72.0 |
| MsG0880045610.01.T01 | MTR_1g062760 | 27.059 | 170 | 103 | 4 | 14 | 180 | 40 | 191 | 3.33e-15 | 70.9 |
| MsG0880045610.01.T01 | MTR_8g093740 | 28.387 | 155 | 91 | 3 | 28 | 180 | 21 | 157 | 3.80e-15 | 70.1 |
| MsG0880045610.01.T01 | MTR_7g103070 | 27.742 | 155 | 92 | 3 | 28 | 180 | 2 | 138 | 7.44e-15 | 68.9 |
| MsG0880045610.01.T01 | MTR_1g029450 | 26.163 | 172 | 103 | 4 | 1 | 169 | 33 | 183 | 1.25e-14 | 69.3 |
| MsG0880045610.01.T01 | MTR_3g064390 | 33.333 | 150 | 79 | 5 | 24 | 171 | 48 | 178 | 3.72e-14 | 67.8 |
| MsG0880045610.01.T01 | MTR_8g103550 | 30.464 | 151 | 84 | 6 | 24 | 172 | 47 | 178 | 1.45e-13 | 66.2 |
| MsG0880045610.01.T01 | MTR_3g064390 | 42.308 | 78 | 43 | 2 | 24 | 100 | 48 | 124 | 3.52e-13 | 64.3 |
| MsG0880045610.01.T01 | MTR_5g076590 | 31.618 | 136 | 73 | 4 | 24 | 158 | 48 | 164 | 7.20e-13 | 64.3 |
| MsG0880045610.01.T01 | MTR_1g094220 | 28.777 | 139 | 79 | 3 | 31 | 168 | 77 | 196 | 2.38e-12 | 63.2 |
| MsG0880045610.01.T01 | MTR_1g094220 | 30.000 | 130 | 71 | 3 | 31 | 159 | 77 | 187 | 5.14e-12 | 62.4 |
| MsG0880045610.01.T01 | MTR_1g094220 | 30.000 | 130 | 71 | 3 | 31 | 159 | 77 | 187 | 5.28e-12 | 62.4 |
| MsG0880045610.01.T01 | MTR_7g081700 | 27.222 | 180 | 103 | 7 | 1 | 173 | 24 | 182 | 6.69e-12 | 62.0 |
| MsG0880045610.01.T01 | MTR_8g006970 | 28.177 | 181 | 102 | 8 | 1 | 174 | 38 | 197 | 7.38e-12 | 62.0 |
| MsG0880045610.01.T01 | MTR_1g094220 | 29.545 | 132 | 73 | 3 | 31 | 161 | 77 | 189 | 8.67e-12 | 62.0 |
| MsG0880045610.01.T01 | MTR_8g006970 | 29.932 | 147 | 82 | 5 | 16 | 160 | 37 | 164 | 8.89e-12 | 61.2 |
| MsG0880045610.01.T01 | MTR_4g098950 | 31.159 | 138 | 75 | 5 | 22 | 158 | 45 | 163 | 1.21e-11 | 61.2 |
| MsG0880045610.01.T01 | MTR_4g099470 | 29.932 | 147 | 82 | 5 | 16 | 160 | 13 | 140 | 3.75e-11 | 59.3 |
| MsG0880045610.01.T01 | MTR_3g096350 | 30.556 | 108 | 69 | 3 | 1 | 105 | 28 | 132 | 3.90e-11 | 58.9 |
| MsG0880045610.01.T01 | MTR_2g102060 | 28.571 | 147 | 84 | 5 | 14 | 158 | 37 | 164 | 5.23e-11 | 59.3 |
| MsG0880045610.01.T01 | MTR_1g068740 | 27.711 | 166 | 100 | 6 | 16 | 179 | 44 | 191 | 5.84e-11 | 59.7 |
| MsG0880045610.01.T01 | MTR_1g068730 | 27.711 | 166 | 100 | 6 | 16 | 179 | 44 | 191 | 9.18e-11 | 58.9 |
| MsG0880045610.01.T01 | MTR_7g100020 | 27.711 | 166 | 100 | 6 | 16 | 179 | 44 | 191 | 9.66e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045610.01.T01 | AT3G51300 | 91.228 | 171 | 8 | 1 | 15 | 185 | 34 | 197 | 1.63e-99 | 286 |
| MsG0880045610.01.T01 | AT2G17800 | 90.643 | 171 | 9 | 1 | 15 | 185 | 34 | 197 | 2.26e-99 | 285 |
| MsG0880045610.01.T01 | AT2G17800 | 90.643 | 171 | 9 | 1 | 15 | 185 | 34 | 197 | 2.26e-99 | 285 |
| MsG0880045610.01.T01 | AT4G35950 | 90.058 | 171 | 10 | 1 | 15 | 185 | 34 | 197 | 5.32e-99 | 285 |
| MsG0880045610.01.T01 | AT4G35020 | 82.558 | 172 | 22 | 2 | 15 | 185 | 34 | 198 | 2.44e-97 | 280 |
| MsG0880045610.01.T01 | AT4G35020 | 82.558 | 172 | 22 | 2 | 15 | 185 | 34 | 198 | 2.44e-97 | 280 |
| MsG0880045610.01.T01 | AT4G35020 | 82.558 | 172 | 22 | 2 | 15 | 185 | 34 | 198 | 2.44e-97 | 280 |
| MsG0880045610.01.T01 | AT1G75840 | 81.325 | 166 | 22 | 2 | 1 | 166 | 22 | 178 | 5.51e-95 | 274 |
| MsG0880045610.01.T01 | AT3G51290 | 90.173 | 173 | 10 | 1 | 13 | 185 | 633 | 798 | 1.00e-94 | 292 |
| MsG0880045610.01.T01 | AT1G20090 | 80.120 | 166 | 24 | 2 | 1 | 166 | 21 | 177 | 7.88e-94 | 271 |
| MsG0880045610.01.T01 | AT5G45970 | 76.647 | 167 | 30 | 2 | 1 | 167 | 22 | 179 | 1.68e-90 | 263 |
| MsG0880045610.01.T01 | AT5G62880 | 71.429 | 168 | 39 | 2 | 1 | 168 | 24 | 182 | 4.64e-87 | 255 |
| MsG0880045610.01.T01 | AT3G48040 | 71.429 | 168 | 39 | 2 | 1 | 168 | 24 | 182 | 1.45e-85 | 251 |
| MsG0880045610.01.T01 | AT4G28950 | 65.426 | 188 | 50 | 4 | 1 | 184 | 22 | 198 | 3.32e-84 | 248 |
| MsG0880045610.01.T01 | AT2G44690 | 67.836 | 171 | 48 | 1 | 15 | 185 | 46 | 209 | 2.72e-81 | 240 |
| MsG0880045610.01.T01 | AT5G62880 | 69.565 | 161 | 36 | 3 | 1 | 161 | 24 | 171 | 5.94e-79 | 233 |
| MsG0880045610.01.T01 | AT3G48040 | 70.395 | 152 | 36 | 2 | 1 | 152 | 24 | 166 | 1.13e-75 | 225 |
| MsG0880045610.01.T01 | AT4G35020 | 89.888 | 89 | 9 | 0 | 14 | 102 | 33 | 121 | 2.26e-57 | 177 |
| MsG0880045610.01.T01 | AT4G35020 | 89.888 | 89 | 9 | 0 | 14 | 102 | 33 | 121 | 2.26e-57 | 177 |
| MsG0880045610.01.T01 | AT4G19640 | 30.000 | 160 | 89 | 5 | 1 | 158 | 26 | 164 | 1.55e-16 | 74.3 |
| MsG0880045610.01.T01 | AT5G45130 | 31.250 | 160 | 87 | 6 | 1 | 158 | 26 | 164 | 2.84e-16 | 73.6 |
| MsG0880045610.01.T01 | AT5G45130 | 33.824 | 136 | 70 | 4 | 24 | 158 | 56 | 172 | 3.91e-16 | 73.6 |
| MsG0880045610.01.T01 | AT5G03530 | 26.667 | 180 | 111 | 4 | 4 | 180 | 29 | 190 | 6.60e-16 | 72.8 |
| MsG0880045610.01.T01 | AT5G03530 | 26.667 | 180 | 111 | 4 | 4 | 180 | 29 | 190 | 6.60e-16 | 72.8 |
| MsG0880045610.01.T01 | AT4G19640 | 37.255 | 102 | 59 | 4 | 1 | 100 | 26 | 124 | 5.85e-15 | 68.9 |
| MsG0880045610.01.T01 | AT4G19640 | 43.590 | 78 | 42 | 2 | 24 | 100 | 48 | 124 | 1.59e-14 | 68.9 |
| MsG0880045610.01.T01 | AT3G09910 | 25.786 | 159 | 97 | 4 | 14 | 169 | 39 | 179 | 1.66e-13 | 66.2 |
| MsG0880045610.01.T01 | AT3G09910 | 25.786 | 159 | 97 | 4 | 14 | 169 | 39 | 179 | 1.66e-13 | 66.2 |
| MsG0880045610.01.T01 | AT3G09910 | 25.786 | 159 | 97 | 4 | 14 | 169 | 39 | 179 | 1.66e-13 | 66.2 |
| MsG0880045610.01.T01 | AT3G54840 | 32.308 | 130 | 68 | 5 | 31 | 159 | 45 | 155 | 1.77e-13 | 65.5 |
| MsG0880045610.01.T01 | AT3G54840 | 33.588 | 131 | 67 | 6 | 31 | 160 | 79 | 190 | 3.80e-13 | 65.1 |
| MsG0880045610.01.T01 | AT3G54840 | 32.308 | 130 | 68 | 5 | 31 | 159 | 79 | 189 | 6.08e-13 | 64.7 |
| MsG0880045610.01.T01 | AT1G43890 | 25.137 | 183 | 113 | 5 | 1 | 180 | 29 | 190 | 6.49e-13 | 64.7 |
| MsG0880045610.01.T01 | AT1G43890 | 25.137 | 183 | 113 | 5 | 1 | 180 | 29 | 190 | 6.49e-13 | 64.7 |
| MsG0880045610.01.T01 | AT1G43890 | 25.137 | 183 | 113 | 5 | 1 | 180 | 29 | 190 | 6.49e-13 | 64.7 |
| MsG0880045610.01.T01 | AT3G09910 | 26.543 | 162 | 95 | 5 | 14 | 169 | 39 | 182 | 1.07e-12 | 63.9 |
| MsG0880045610.01.T01 | AT3G09910 | 26.543 | 162 | 95 | 5 | 14 | 169 | 39 | 182 | 1.07e-12 | 63.9 |
| MsG0880045610.01.T01 | AT1G16920 | 41.667 | 72 | 40 | 2 | 30 | 100 | 57 | 127 | 1.68e-11 | 61.2 |
| MsG0880045610.01.T01 | AT1G09630 | 29.560 | 159 | 105 | 3 | 30 | 182 | 56 | 213 | 3.25e-11 | 60.5 |
| MsG0880045610.01.T01 | AT2G44610 | 31.034 | 145 | 79 | 6 | 16 | 158 | 38 | 163 | 3.45e-11 | 60.1 |
| MsG0880045610.01.T01 | AT1G02130 | 29.630 | 162 | 91 | 8 | 1 | 160 | 24 | 164 | 3.57e-11 | 60.1 |
Find 59 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTGGTGCTTTGCTTTCT+TGG | 0.177779 | 8:+61729552 | MsG0880045610.01.T01:three_prime_UTR |
| GCACTGTGAATCTGGGTTTA+TGG | 0.186099 | 8:+61727118 | MsG0880045610.01.T01:CDS |
| AAGCTTGGTAGGTCTATTTC+TGG | 0.214051 | 8:+61727578 | MsG0880045610.01.T01:CDS |
| TTATGAAAATGTTTCTAAAA+AGG | 0.255465 | 8:+61727321 | MsG0880045610.01.T01:CDS |
| ATTGTCAAATTTGTATTTCA+TGG | 0.261508 | 8:+61729592 | MsG0880045610.01.T01:three_prime_UTR |
| CTTTGTGCCAACCAGAATAA+TGG | 0.304891 | 8:-61727558 | None:intergenic |
| AACAAGGTAGTCATCCTAAC+TGG | 0.314771 | 8:-61729665 | None:intergenic |
| CACTGTGAATCTGGGTTTAT+GGG | 0.333768 | 8:+61727119 | MsG0880045610.01.T01:CDS |
| ACCTGGTGTTCCCATTATTC+TGG | 0.347919 | 8:+61727547 | MsG0880045610.01.T01:CDS |
| ATAAACTTAAGTTAAGAAAA+AGG | 0.348662 | 8:-61729621 | None:intergenic |
| GAATGGAAGCACTGTGAATC+TGG | 0.355358 | 8:+61727110 | MsG0880045610.01.T01:CDS |
| TTCACCTGAGCGGTGGTAAT+AGG | 0.380693 | 8:-61729004 | None:intergenic |
| TGGTTGAAGGACAACTCTTA+TGG | 0.386728 | 8:-61729320 | None:intergenic |
| TCCATCTTCTTCAACATAAT+AGG | 0.387372 | 8:-61729474 | None:intergenic |
| TCCTATTATGTTGAAGAAGA+TGG | 0.395659 | 8:+61729473 | MsG0880045610.01.T01:three_prime_UTR |
| AAAGAAGAGTAAAGCTCAAA+AGG | 0.404647 | 8:+61729357 | MsG0880045610.01.T01:CDS |
| TTTGTGCCAACCAGAATAAT+GGG | 0.430326 | 8:-61727557 | None:intergenic |
| TTGAAATGAGACAGACCTTC+GGG | 0.436373 | 8:+61728943 | MsG0880045610.01.T01:intron |
| ACATAATAGGAATGAAGAAT+AGG | 0.461062 | 8:-61729461 | None:intergenic |
| CTAAATCTCGTTGAAGCATA+AGG | 0.461587 | 8:+61729529 | MsG0880045610.01.T01:three_prime_UTR |
| AGTGCAAATGTGGTTGTGAA+TGG | 0.466304 | 8:+61727093 | MsG0880045610.01.T01:CDS |
| AAGAGGAGAGAAATACATGT+TGG | 0.474506 | 8:-61729435 | None:intergenic |
| TAGACTGGAATATCCCAGTT+AGG | 0.477541 | 8:+61729651 | MsG0880045610.01.T01:three_prime_UTR |
| GGTGCATAATGCTTCAACTC+TGG | 0.481713 | 8:-61727527 | None:intergenic |
| AAGTTTATGTATTAATAGAC+TGG | 0.481872 | 8:+61729636 | MsG0880045610.01.T01:three_prime_UTR |
| GTTCGATATTGTGATTTGCT+AGG | 0.482241 | 8:+61729383 | MsG0880045610.01.T01:exon |
| CAGTTCTTTGTCGACCATCC+TGG | 0.485725 | 8:+61728974 | MsG0880045610.01.T01:CDS |
| GAGAAATACATGTTGGAGAA+TGG | 0.486683 | 8:-61729428 | None:intergenic |
| AGCAAATCACAATATCGAAC+AGG | 0.488579 | 8:-61729380 | None:intergenic |
| GAACTGCATTCAATATAAGC+AGG | 0.495522 | 8:-61729165 | None:intergenic |
| GGTGTTCCCATTATTCTGGT+TGG | 0.501900 | 8:+61727551 | MsG0880045610.01.T01:CDS |
| ATTCTGGTTGGCACAAAGCT+TGG | 0.504446 | 8:+61727563 | MsG0880045610.01.T01:CDS |
| TCTTGAAGGGAGAAGAGCTC+AGG | 0.509266 | 8:+61729127 | MsG0880045610.01.T01:intron |
| GAATGAAGAATAGGAAGAAG+AGG | 0.519023 | 8:-61729452 | None:intergenic |
| CGCTTTCTCACTCATAAGCA+AGG | 0.527969 | 8:+61727294 | MsG0880045610.01.T01:CDS |
| CTTGAAATGAGACAGACCTT+CGG | 0.529221 | 8:+61728942 | MsG0880045610.01.T01:intron |
| TGGTTGGCACAAAGCTTGGT+AGG | 0.533420 | 8:+61727567 | MsG0880045610.01.T01:CDS |
| CTGAAATTGTCGAAGACAGT+TGG | 0.537778 | 8:-61727072 | None:intergenic |
| TGTTCCTATTACCACCGCTC+AGG | 0.553664 | 8:+61729000 | MsG0880045610.01.T01:CDS |
| CGACAATTTCAGTGCAAATG+TGG | 0.560089 | 8:+61727083 | MsG0880045610.01.T01:CDS |
| CTGGGTTTATGGGACACTGC+AGG | 0.572114 | 8:+61727129 | MsG0880045610.01.T01:CDS |
| TGAAGAAGATGGAGTCTATG+TGG | 0.582108 | 8:+61729484 | MsG0880045610.01.T01:three_prime_UTR |
| CACAATATTCACCTGAGCGG+TGG | 0.588643 | 8:-61729011 | None:intergenic |
| GATATTGTGATTTGCTAGGT+CGG | 0.597878 | 8:+61729387 | MsG0880045610.01.T01:exon |
| TTAAGACCTTTGAGTTATCG+TGG | 0.598742 | 8:+61727253 | MsG0880045610.01.T01:CDS |
| ATGCAGTTCAAAATCACAGC+AGG | 0.601412 | 8:+61729179 | MsG0880045610.01.T01:CDS |
| AATGGAAGCACTGTGAATCT+GGG | 0.602680 | 8:+61727111 | MsG0880045610.01.T01:CDS |
| ACAAGGTAGTCATCCTAACT+GGG | 0.609256 | 8:-61729664 | None:intergenic |
| TATATATCTTCAAGCAAACA+AGG | 0.612690 | 8:-61729681 | None:intergenic |
| GAGTTGAAGCATTATGCACC+TGG | 0.616427 | 8:+61727530 | MsG0880045610.01.T01:CDS |
| ACCAGAATAATGGGAACACC+AGG | 0.622688 | 8:-61727548 | None:intergenic |
| GAAGAAGATGGAGTCTATGT+GGG | 0.625354 | 8:+61729485 | MsG0880045610.01.T01:three_prime_UTR |
| TCGTTGAAGCATAAGGTGGT+TGG | 0.631100 | 8:+61729536 | MsG0880045610.01.T01:three_prime_UTR |
| GTGGTAATAGGAACAGCACC+AGG | 0.638537 | 8:-61728992 | None:intergenic |
| TAATAGGAACAGCACCAGGA+TGG | 0.658624 | 8:-61728988 | None:intergenic |
| AGAACTGCTTGTCATCCCGA+AGG | 0.663377 | 8:-61728958 | None:intergenic |
| TCAGCACCACGATAACTCAA+AGG | 0.665908 | 8:-61727259 | None:intergenic |
| AATCTCGTTGAAGCATAAGG+TGG | 0.676333 | 8:+61729532 | MsG0880045610.01.T01:three_prime_UTR |
| AAACACAATATTCACCTGAG+CGG | 0.759772 | 8:-61729014 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAGAATTATCAATAA+TGG | - | Chr8:61727876-61727895 | None:intergenic | 10.0% |
| !! | TAAAAAGAATTATCAATAAT+GGG | - | Chr8:61727875-61727894 | None:intergenic | 10.0% |
| !!! | ATATTCCAAAATATTTTATA+TGG | + | Chr8:61728387-61728406 | MsG0880045610.01.T01:intron | 10.0% |
| !! | AGTATTTGACATTAATTAAA+AGG | + | Chr8:61728738-61728757 | MsG0880045610.01.T01:intron | 15.0% |
| !! | ATAAACTTAAGTTAAGAAAA+AGG | - | Chr8:61729624-61729643 | None:intergenic | 15.0% |
| !! | GTATTTGACATTAATTAAAA+GGG | + | Chr8:61728739-61728758 | MsG0880045610.01.T01:intron | 15.0% |
| !!! | TTATGAAAATGTTTCTAAAA+AGG | + | Chr8:61727321-61727340 | MsG0880045610.01.T01:CDS | 15.0% |
| !! | AAAACTGCTTATAACTTATA+GGG | + | Chr8:61728171-61728190 | MsG0880045610.01.T01:intron | 20.0% |
| !! | AAATACTTGTGAGATTATTT+GGG | + | Chr8:61728070-61728089 | MsG0880045610.01.T01:intron | 20.0% |
| !! | AAGTTTATGTATTAATAGAC+TGG | + | Chr8:61729636-61729655 | MsG0880045610.01.T01:three_prime_UTR | 20.0% |
| !! | AGTATGAAAACAAATTAACA+AGG | - | Chr8:61729046-61729065 | None:intergenic | 20.0% |
| !! | ATTGTCAAATTTGTATTTCA+TGG | + | Chr8:61729592-61729611 | MsG0880045610.01.T01:three_prime_UTR | 20.0% |
| !! | TAAATACTTGTGAGATTATT+TGG | + | Chr8:61728069-61728088 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | AAAAGTGCATTTTAAAAACA+TGG | - | Chr8:61727388-61727407 | None:intergenic | 20.0% |
| !!! | AAAGTGCATTTTAAAAACAT+GGG | - | Chr8:61727387-61727406 | None:intergenic | 20.0% |
| !!! | AAGTTGTTACTTTAGAATTT+TGG | + | Chr8:61728679-61728698 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | AATGTTTTTCAAAACAGTTA+TGG | + | Chr8:61728273-61728292 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | ATAACTGTTTTGAAAAACAT+TGG | - | Chr8:61728274-61728293 | None:intergenic | 20.0% |
| !!! | ATTAGTTAACAAGTGTTTTA+AGG | + | Chr8:61727764-61727783 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | CCAAAATATTTTATATGGTA+GGG | + | Chr8:61728392-61728411 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | TATTGTTTTTCTTTTGAAAC+AGG | + | Chr8:61727211-61727230 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | TCCAAAATATTTTATATGGT+AGG | + | Chr8:61728391-61728410 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | TTAGTTAACAAGTGTTTTAA+GGG | + | Chr8:61727765-61727784 | MsG0880045610.01.T01:intron | 20.0% |
| !!! | TTTAGAAACATTTTCATAAC+TGG | - | Chr8:61727320-61727339 | None:intergenic | 20.0% |
| ! | AAACCACACATTCATATAAA+AGG | - | Chr8:61727419-61727438 | None:intergenic | 25.0% |
| ! | AAATGAAAGCTTATAAGAGA+AGG | - | Chr8:61728001-61728020 | None:intergenic | 25.0% |
| ! | AACCACACATTCATATAAAA+GGG | - | Chr8:61727418-61727437 | None:intergenic | 25.0% |
| ! | AACTTAAGTTAAGAAAAAGG+TGG | - | Chr8:61729621-61729640 | None:intergenic | 25.0% |
| ! | AATGAAAGCTTATAAGAGAA+GGG | - | Chr8:61728000-61728019 | None:intergenic | 25.0% |
| ! | ACATAATAGGAATGAAGAAT+AGG | - | Chr8:61729464-61729483 | None:intergenic | 25.0% |
| ! | ACTTAAGTTAAGAAAAAGGT+GGG | - | Chr8:61729620-61729639 | None:intergenic | 25.0% |
| ! | CAACACCTAAAACTTAAATA+AGG | - | Chr8:61728483-61728502 | None:intergenic | 25.0% |
| ! | CCAAATATAGAAATACTATC+TGG | + | Chr8:61727667-61727686 | MsG0880045610.01.T01:intron | 25.0% |
| ! | GAAAACTGCTTATAACTTAT+AGG | + | Chr8:61728170-61728189 | MsG0880045610.01.T01:intron | 25.0% |
| ! | GACATTAATTAAAAGGGAAA+TGG | + | Chr8:61728745-61728764 | MsG0880045610.01.T01:intron | 25.0% |
| ! | TAAGCTTTCATTTCAATTCA+AGG | + | Chr8:61728008-61728027 | MsG0880045610.01.T01:intron | 25.0% |
| ! | TACAATATCAGATGTTACAT+TGG | - | Chr8:61727604-61727623 | None:intergenic | 25.0% |
| ! | TATATATCTTCAAGCAAACA+AGG | - | Chr8:61729684-61729703 | None:intergenic | 25.0% |
| ! | TGGAAGAATAAAAAACTGTT+TGG | - | Chr8:61728254-61728273 | None:intergenic | 25.0% |
| ! | TTATAAGAGAAGGGAAAAAA+AGG | - | Chr8:61727991-61728010 | None:intergenic | 25.0% |
| !! | AGATTTTCATATCTTCTTGA+AGG | + | Chr8:61729113-61729132 | MsG0880045610.01.T01:intron | 25.0% |
| !! | CCAGATAGTATTTCTATATT+TGG | - | Chr8:61727670-61727689 | None:intergenic | 25.0% |
| !! | CCCTACCATATAAAATATTT+TGG | - | Chr8:61728395-61728414 | None:intergenic | 25.0% |
| !! | GATTTTCATATCTTCTTGAA+GGG | + | Chr8:61729114-61729133 | MsG0880045610.01.T01:intron | 25.0% |
| !! | TGATGAATTCAACTTTCTTT+TGG | + | Chr8:61728521-61728540 | MsG0880045610.01.T01:intron | 25.0% |
| !!! | CTCATCCTTATTTAAGTTTT+AGG | + | Chr8:61728475-61728494 | MsG0880045610.01.T01:intron | 25.0% |
| !!! | GTTACTTTAGAATTTTGGTT+TGG | + | Chr8:61728684-61728703 | MsG0880045610.01.T01:intron | 25.0% |
| AAAGAAGAGTAAAGCTCAAA+AGG | + | Chr8:61729357-61729376 | MsG0880045610.01.T01:CDS | 30.0% | |
| ACATATTTGAGCTTATCTAC+TGG | + | Chr8:61728044-61728063 | MsG0880045610.01.T01:intron | 30.0% | |
| ATAGAAATACTATCTGGAAG+TGG | + | Chr8:61727673-61727692 | MsG0880045610.01.T01:intron | 30.0% | |
| ATTTCAATTCAAGGTCTCTT+TGG | + | Chr8:61728017-61728036 | MsG0880045610.01.T01:intron | 30.0% | |
| GGAATATATAGAGACAAGAA+AGG | - | Chr8:61728374-61728393 | None:intergenic | 30.0% | |
| TCCATCTTCTTCAACATAAT+AGG | - | Chr8:61729477-61729496 | None:intergenic | 30.0% | |
| TCCTATTATGTTGAAGAAGA+TGG | + | Chr8:61729473-61729492 | MsG0880045610.01.T01:three_prime_UTR | 30.0% | |
| TCTCCAAATAGAGCAAAAAA+TGG | - | Chr8:61728837-61728856 | None:intergenic | 30.0% | |
| TGAACTTATGAACACAACTT+TGG | + | Chr8:61728093-61728112 | MsG0880045610.01.T01:intron | 30.0% | |
| TGTGTGGTTTCTTTATAAAC+TGG | + | Chr8:61727429-61727448 | MsG0880045610.01.T01:intron | 30.0% | |
| TTCAAGTCACAAGATAGTTA+AGG | - | Chr8:61728928-61728947 | None:intergenic | 30.0% | |
| ! | CTCTTCTTTTTCTTTTGCTT+TGG | - | Chr8:61729346-61729365 | None:intergenic | 30.0% |
| ! | TTCCCTTTTATATGAATGTG+TGG | + | Chr8:61727413-61727432 | MsG0880045610.01.T01:intron | 30.0% |
| ! | TTCTTTTTCTTTTGCTTTGG+TGG | - | Chr8:61729343-61729362 | None:intergenic | 30.0% |
| ! | TTGCATCTTTTCACTTTGTT+TGG | + | Chr8:61727034-61727053 | MsG0880045610.01.T01:CDS | 30.0% |
| !! | GAATTATCAATAATGGGTCA+TGG | - | Chr8:61727869-61727888 | None:intergenic | 30.0% |
| !! | TTTTAAAAACATGGGACACA+AGG | - | Chr8:61727379-61727398 | None:intergenic | 30.0% |
| !! | TTTTCACTTTGTTTGGAAAC+AGG | + | Chr8:61727041-61727060 | MsG0880045610.01.T01:CDS | 30.0% |
| !!! | ATATGGTCTTGTTGTTTTGT+TGG | + | Chr8:61728340-61728359 | MsG0880045610.01.T01:intron | 30.0% |
| !!! | ATGCCATTTTTTGCTCTATT+TGG | + | Chr8:61728831-61728850 | MsG0880045610.01.T01:intron | 30.0% |
| AAACACAATATTCACCTGAG+CGG | - | Chr8:61729017-61729036 | None:intergenic | 35.0% | |
| AAAGAGTAACTTCTTGCTTC+CGG | + | Chr8:61727927-61727946 | MsG0880045610.01.T01:intron | 35.0% | |
| AACAGTAAAAGAACGTGCAA+AGG | - | Chr8:61728886-61728905 | None:intergenic | 35.0% | |
| AAGAGGAGAGAAATACATGT+TGG | - | Chr8:61729438-61729457 | None:intergenic | 35.0% | |
| AAGTTACTCTTTAGCAAGAC+TGG | - | Chr8:61727919-61727938 | None:intergenic | 35.0% | |
| AGCAAATCACAATATCGAAC+AGG | - | Chr8:61729383-61729402 | None:intergenic | 35.0% | |
| AGGGAAATGGTCATTAATGA+TGG | + | Chr8:61728758-61728777 | MsG0880045610.01.T01:intron | 35.0% | |
| CTAAATCTCGTTGAAGCATA+AGG | + | Chr8:61729529-61729548 | MsG0880045610.01.T01:three_prime_UTR | 35.0% | |
| CTTTCTTGTCTCTCTCTATA+TGG | + | Chr8:61728323-61728342 | MsG0880045610.01.T01:intron | 35.0% | |
| GAACTGCATTCAATATAAGC+AGG | - | Chr8:61729168-61729187 | None:intergenic | 35.0% | |
| GAATGAAGAATAGGAAGAAG+AGG | - | Chr8:61729455-61729474 | None:intergenic | 35.0% | |
| GAGAAATACATGTTGGAGAA+TGG | - | Chr8:61729431-61729450 | None:intergenic | 35.0% | |
| GCACTGTGTACATTGTAAAA+AGG | - | Chr8:61727177-61727196 | None:intergenic | 35.0% | |
| TCAGGTGAATATTGTGTTTC+TGG | + | Chr8:61729018-61729037 | MsG0880045610.01.T01:intron | 35.0% | |
| TTGGTTTCTAATTCGCTAGA+AGG | - | Chr8:61727651-61727670 | None:intergenic | 35.0% | |
| TTTGTGCCAACCAGAATAAT+GGG | - | Chr8:61727560-61727579 | None:intergenic | 35.0% | |
| ! | CTGTTTTGTCAAATAAGAGC+TGG | + | Chr8:61728901-61728920 | MsG0880045610.01.T01:intron | 35.0% |
| ! | TTAAGACCTTTGAGTTATCG+TGG | + | Chr8:61727253-61727272 | MsG0880045610.01.T01:CDS | 35.0% |
| !! | CATAAACTCTGAAACACAGT+GGG | - | Chr8:61727354-61727373 | None:intergenic | 35.0% |
| !! | GATATTGTGATTTGCTAGGT+CGG | + | Chr8:61729387-61729406 | MsG0880045610.01.T01:exon | 35.0% |
| !! | GTTCGATATTGTGATTTGCT+AGG | + | Chr8:61729383-61729402 | MsG0880045610.01.T01:exon | 35.0% |
| !!! | CATTTTTAGTGAGAATGACG+TGG | - | Chr8:61728714-61728733 | None:intergenic | 35.0% |
| !!! | TTCTTTTGAAACAGGACAAG+AGG | + | Chr8:61727219-61727238 | MsG0880045610.01.T01:intron | 35.0% |
| !!! | TTTTGGTTTCTTCTTGACAC+CGG | + | Chr8:61728538-61728557 | MsG0880045610.01.T01:intron | 35.0% |
| AACAAGGTAGTCATCCTAAC+TGG | - | Chr8:61729668-61729687 | None:intergenic | 40.0% | |
| AACTTCTTGCTTCCGGTAAA+GGG | + | Chr8:61727934-61727953 | MsG0880045610.01.T01:intron | 40.0% | |
| AAGCTTGGTAGGTCTATTTC+TGG | + | Chr8:61727578-61727597 | MsG0880045610.01.T01:CDS | 40.0% | |
| AATCTCGTTGAAGCATAAGG+TGG | + | Chr8:61729532-61729551 | MsG0880045610.01.T01:three_prime_UTR | 40.0% | |
| AATGATGGCATGATGCAGTA+TGG | + | Chr8:61728773-61728792 | MsG0880045610.01.T01:intron | 40.0% | |
| ACAAGGTAGTCATCCTAACT+GGG | - | Chr8:61729667-61729686 | None:intergenic | 40.0% | |
| ACTTTCTAGACGCAAGTACA+TGG | - | Chr8:61728620-61728639 | None:intergenic | 40.0% | |
| AGTGCAAATGTGGTTGTGAA+TGG | + | Chr8:61727093-61727112 | MsG0880045610.01.T01:CDS | 40.0% | |
| ATGCAGTTCAAAATCACAGC+AGG | + | Chr8:61729179-61729198 | MsG0880045610.01.T01:CDS | 40.0% | |
| CACTGTGAATCTGGGTTTAT+GGG | + | Chr8:61727119-61727138 | MsG0880045610.01.T01:CDS | 40.0% | |
| CGACAATTTCAGTGCAAATG+TGG | + | Chr8:61727083-61727102 | MsG0880045610.01.T01:CDS | 40.0% | |
| CTGAAATTGTCGAAGACAGT+TGG | - | Chr8:61727075-61727094 | None:intergenic | 40.0% | |
| CTTGAAATGAGACAGACCTT+CGG | + | Chr8:61728942-61728961 | MsG0880045610.01.T01:intron | 40.0% | |
| CTTTGTGCCAACCAGAATAA+TGG | - | Chr8:61727561-61727580 | None:intergenic | 40.0% | |
| GAAGAAGATGGAGTCTATGT+GGG | + | Chr8:61729485-61729504 | MsG0880045610.01.T01:three_prime_UTR | 40.0% | |
| TAACTTCTTGCTTCCGGTAA+AGG | + | Chr8:61727933-61727952 | MsG0880045610.01.T01:intron | 40.0% | |
| TAGACTGGAATATCCCAGTT+AGG | + | Chr8:61729651-61729670 | MsG0880045610.01.T01:three_prime_UTR | 40.0% | |
| TCTTCTTGACACCGGATAAA+AGG | + | Chr8:61728546-61728565 | MsG0880045610.01.T01:intron | 40.0% | |
| TGAAGAAGATGGAGTCTATG+TGG | + | Chr8:61729484-61729503 | MsG0880045610.01.T01:three_prime_UTR | 40.0% | |
| TGGCATGCAAGTTATTCACA+TGG | - | Chr8:61728817-61728836 | None:intergenic | 40.0% | |
| TGGTTGAAGGACAACTCTTA+TGG | - | Chr8:61729323-61729342 | None:intergenic | 40.0% | |
| TGTACTTGCGTCTAGAAAGT+AGG | + | Chr8:61728620-61728639 | MsG0880045610.01.T01:intron | 40.0% | |
| TGTTACCTTCTTGTACACGA+CGG | + | Chr8:61729219-61729238 | MsG0880045610.01.T01:intron | 40.0% | |
| TTGAAATGAGACAGACCTTC+GGG | + | Chr8:61728943-61728962 | MsG0880045610.01.T01:intron | 40.0% | |
| TTGCGTCTAGAAAGTAGGAA+GGG | + | Chr8:61728625-61728644 | MsG0880045610.01.T01:intron | 40.0% | |
| ! | ACTGCCTAATGCCTTTTATC+CGG | - | Chr8:61728560-61728579 | None:intergenic | 40.0% |
| !! | AATGGAAGCACTGTGAATCT+GGG | + | Chr8:61727111-61727130 | MsG0880045610.01.T01:CDS | 40.0% |
| !! | GCATAAACTCTGAAACACAG+TGG | - | Chr8:61727355-61727374 | None:intergenic | 40.0% |
| !! | TCTTTTGCTTTGGTGGTTGA+AGG | - | Chr8:61729336-61729355 | None:intergenic | 40.0% |
| ACAATGTACACAGTGCTGTC+TGG | + | Chr8:61727181-61727200 | MsG0880045610.01.T01:intron | 45.0% | |
| ACCTGGTGTTCCCATTATTC+TGG | + | Chr8:61727547-61727566 | MsG0880045610.01.T01:CDS | 45.0% | |
| CGCTTTCTCACTCATAAGCA+AGG | + | Chr8:61727294-61727313 | MsG0880045610.01.T01:CDS | 45.0% | |
| CTTAACCGTCGTGTACAAGA+AGG | - | Chr8:61729227-61729246 | None:intergenic | 45.0% | |
| CTTCACAGTTCACCCTTTAC+CGG | - | Chr8:61727949-61727968 | None:intergenic | 45.0% | |
| CTTGCGTCTAGAAAGTAGGA+AGG | + | Chr8:61728624-61728643 | MsG0880045610.01.T01:intron | 45.0% | |
| GCACTGTGAATCTGGGTTTA+TGG | + | Chr8:61727118-61727137 | MsG0880045610.01.T01:CDS | 45.0% | |
| GGTAAAGGGTGAACTGTGAA+GGG | + | Chr8:61727948-61727967 | MsG0880045610.01.T01:intron | 45.0% | |
| GGTGCATAATGCTTCAACTC+TGG | - | Chr8:61727530-61727549 | None:intergenic | 45.0% | |
| GGTGTTCCCATTATTCTGGT+TGG | + | Chr8:61727551-61727570 | MsG0880045610.01.T01:CDS | 45.0% | |
| TAATAGGAACAGCACCAGGA+TGG | - | Chr8:61728991-61729010 | None:intergenic | 45.0% | |
| TCAGCACCACGATAACTCAA+AGG | - | Chr8:61727262-61727281 | None:intergenic | 45.0% | |
| TCGTTGAAGCATAAGGTGGT+TGG | + | Chr8:61729536-61729555 | MsG0880045610.01.T01:three_prime_UTR | 45.0% | |
| TCTAGAAAGTAGGAAGGGAG+TGG | + | Chr8:61728630-61728649 | MsG0880045610.01.T01:intron | 45.0% | |
| ! | ACCAGAATAATGGGAACACC+AGG | - | Chr8:61727551-61727570 | None:intergenic | 45.0% |
| ! | ATTCTGGTTGGCACAAAGCT+TGG | + | Chr8:61727563-61727582 | MsG0880045610.01.T01:CDS | 45.0% |
| ! | GAGTTGAAGCATTATGCACC+TGG | + | Chr8:61727530-61727549 | MsG0880045610.01.T01:CDS | 45.0% |
| ! | TGGTTGGTGCTTTGCTTTCT+TGG | + | Chr8:61729552-61729571 | MsG0880045610.01.T01:three_prime_UTR | 45.0% |
| !! | GAATGGAAGCACTGTGAATC+TGG | + | Chr8:61727110-61727129 | MsG0880045610.01.T01:CDS | 45.0% |
| !! | GACACCGGATAAAAGGCATT+AGG | + | Chr8:61728553-61728572 | MsG0880045610.01.T01:intron | 45.0% |
| !! | ATTAAAAAAAAAAATAGAAT+AGG | - | Chr8:61727746-61727765 | None:intergenic | 5.0% |
| ACGTGCTGTCTCATTTCCAG+TGG | + | Chr8:61727501-61727520 | MsG0880045610.01.T01:intron | 50.0% | |
| AGAACTGCTTGTCATCCCGA+AGG | - | Chr8:61728961-61728980 | None:intergenic | 50.0% | |
| CACAATATTCACCTGAGCGG+TGG | - | Chr8:61729014-61729033 | None:intergenic | 50.0% | |
| CAGTTCTTTGTCGACCATCC+TGG | + | Chr8:61728974-61728993 | MsG0880045610.01.T01:CDS | 50.0% | |
| CGGTAAAGGGTGAACTGTGA+AGG | + | Chr8:61727947-61727966 | MsG0880045610.01.T01:intron | 50.0% | |
| GTGGTAATAGGAACAGCACC+AGG | - | Chr8:61728995-61729014 | None:intergenic | 50.0% | |
| TCTTGAAGGGAGAAGAGCTC+AGG | + | Chr8:61729127-61729146 | MsG0880045610.01.T01:intron | 50.0% | |
| TGGTTGGCACAAAGCTTGGT+AGG | + | Chr8:61727567-61727586 | MsG0880045610.01.T01:CDS | 50.0% | |
| TGTTCCTATTACCACCGCTC+AGG | + | Chr8:61729000-61729019 | MsG0880045610.01.T01:CDS | 50.0% | |
| TTCACCTGAGCGGTGGTAAT+AGG | - | Chr8:61729007-61729026 | None:intergenic | 50.0% | |
| !! | GCTTCAACTCTGGAATCCAC+TGG | - | Chr8:61727520-61727539 | None:intergenic | 50.0% |
| CTGGGTTTATGGGACACTGC+AGG | + | Chr8:61727129-61727148 | MsG0880045610.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 61727021 | 61729748 | 61727021 | ID=MsG0880045610.01;Name=MsG0880045610.01 |
| Chr8 | mRNA | 61727021 | 61729748 | 61727021 | ID=MsG0880045610.01.T01;Parent=MsG0880045610.01;Name=MsG0880045610.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.8|0.66|1|1|1|6|352|185 |
| Chr8 | exon | 61727021 | 61727150 | 61727021 | ID=MsG0880045610.01.T01:exon:23582;Parent=MsG0880045610.01.T01 |
| Chr8 | exon | 61727233 | 61727342 | 61727233 | ID=MsG0880045610.01.T01:exon:23583;Parent=MsG0880045610.01.T01 |
| Chr8 | exon | 61727521 | 61727605 | 61727521 | ID=MsG0880045610.01.T01:exon:23584;Parent=MsG0880045610.01.T01 |
| Chr8 | exon | 61728957 | 61729021 | 61728957 | ID=MsG0880045610.01.T01:exon:23585;Parent=MsG0880045610.01.T01 |
| Chr8 | exon | 61729135 | 61729200 | 61729135 | ID=MsG0880045610.01.T01:exon:23586;Parent=MsG0880045610.01.T01 |
| Chr8 | exon | 61729295 | 61729748 | 61729295 | ID=MsG0880045610.01.T01:exon:23587;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61727021 | 61727150 | 61727021 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61727233 | 61727342 | 61727233 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61727521 | 61727605 | 61727521 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61728957 | 61729021 | 61728957 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61729135 | 61729200 | 61729135 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | CDS | 61729295 | 61729396 | 61729295 | ID=MsG0880045610.01.T01:cds;Parent=MsG0880045610.01.T01 |
| Chr8 | three_prime_UTR | 61729397 | 61729748 | 61729397 | ID=MsG0880045610.01.T01:three_prime_utr;Parent=MsG0880045610.01.T01 |
| Gene Sequence |
| Protein sequence |
