AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045792.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045792.01.T01 MTR_8g079080 90.769 65 6 0 209 273 41 105 1.15e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045792.01.T01 AT5G05920 68.800 375 61 5 10 363 2 341 0.0 512
MsG0880045792.01.T01 AT5G05920 67.194 253 35 3 124 363 6 223 1.85e-114 334
MsG0880045792.01.T01 AT5G05920 59.043 188 29 3 189 363 1 153 2.00e-65 206

Find 77 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGATTTGAAGACACTTTC+CGG 0.186586 8:+64529411 None:intergenic
ACTTCTAATCTTATCTCTTC+TGG 0.201893 8:-64529086 MsG0880045792.01.T01:CDS
GAATTTGATGGAAGTGATTC+TGG 0.236275 8:-64526334 MsG0880045792.01.T01:CDS
GAATCGAATCGGTAATTTAT+TGG 0.240496 8:-64528592 MsG0880045792.01.T01:CDS
GGCTACGTGTAAAGTGTTTC+TGG 0.243992 8:-64529114 MsG0880045792.01.T01:CDS
ATTTGCAATAATTGTCATTA+GGG 0.270000 8:+64528568 None:intergenic
GGAATCATAACTAAAATAAT+TGG 0.276859 8:-64526520 MsG0880045792.01.T01:CDS
TTGGCAATGCAACAGATATA+AGG 0.280747 8:-64526501 MsG0880045792.01.T01:CDS
AATTTGCAATAATTGTCATT+AGG 0.309498 8:+64528567 None:intergenic
GTTAATCCTGGACAATAAAC+TGG 0.349470 8:+64526688 None:intergenic
CATTTGATTAACAACTTGAA+TGG 0.354309 8:+64529300 None:intergenic
ACACTTTCCGGCGAGGCTTT+CGG 0.357612 8:+64529423 None:intergenic
AATACTGCACAAGAATTTGA+TGG 0.361085 8:-64526346 MsG0880045792.01.T01:CDS
TGCCTTGCACCAACGTATAA+AGG 0.362855 8:-64528657 MsG0880045792.01.T01:CDS
TGACAATTATTGCAAATTCC+AGG 0.364738 8:-64528562 MsG0880045792.01.T01:CDS
ATGTACAGCTTCACCATTCA+TGG 0.365986 8:+64526477 None:intergenic
ACCTGGTTTAGTGAAATAAA+AGG 0.368319 8:+64526168 None:intergenic
ATAATCATGCCTGTCTTCAT+AGG 0.379415 8:+64526448 None:intergenic
CCCCATGAAACAGCCTCATC+TGG 0.392601 8:+64526304 None:intergenic
AGGATTAACCGATGGCTCAT+TGG 0.403351 8:-64526674 MsG0880045792.01.T01:CDS
AACATGGGTTGAAGCTTGAT+TGG 0.406809 8:-64529184 MsG0880045792.01.T01:intron
CATGTTATTGTTACAACTAC+AGG 0.408408 8:-64528705 MsG0880045792.01.T01:CDS
GCTACGTGTAAAGTGTTTCT+GGG 0.412284 8:-64529113 MsG0880045792.01.T01:CDS
AAAGGAGATTTCTCTTTGCC+TGG 0.416263 8:-64528639 MsG0880045792.01.T01:CDS
ATCCAGATGAGGCTGTTTCA+TGG 0.429972 8:-64526306 MsG0880045792.01.T01:CDS
TGGCAATGCAACAGATATAA+GGG 0.431616 8:-64526500 MsG0880045792.01.T01:CDS
CTCAAATCCATGCTCACTAC+TGG 0.433323 8:-64529349 MsG0880045792.01.T01:CDS
CATTCAAGTTGTTAATCAAA+TGG 0.437638 8:-64529299 MsG0880045792.01.T01:intron
ACATTAAGACCACGGTTGTC+AGG 0.437997 8:+64526610 None:intergenic
TCACTACAATCGTCAGTAAT+GGG 0.439639 8:+64529146 None:intergenic
GGATTAACCGATGGCTCATT+GGG 0.439770 8:-64526673 MsG0880045792.01.T01:CDS
CGATTGTAGTGATCGGAAAT+CGG 0.442152 8:-64529135 MsG0880045792.01.T01:CDS
AATATTCCAGTTTATTGTCC+AGG 0.444941 8:-64526694 MsG0880045792.01.T01:CDS
AACAAGTAGCGAAAGTATAT+AGG 0.453739 8:+64526244 None:intergenic
TTGAATGGCTTCACCGAGGT+TGG 0.457978 8:+64529315 None:intergenic
TCCAGATGAGGCTGTTTCAT+GGG 0.464019 8:-64526305 MsG0880045792.01.T01:CDS
GCGTTGCAAATGTGATGTTT+CGG 0.480473 8:+64526409 None:intergenic
ATTATTGCAAATTCCAGGAC+TGG 0.481570 8:-64528557 MsG0880045792.01.T01:CDS
GGAGCTTATCTTCGCTCAAA+AGG 0.483770 8:-64528618 MsG0880045792.01.T01:CDS
ATCACTACAATCGTCAGTAA+TGG 0.493546 8:+64529145 None:intergenic
CTTCCTTTGTCAGCATCACA+TGG 0.513831 8:-64529045 MsG0880045792.01.T01:intron
AATGAGCCATCGGTTAATCC+TGG 0.515125 8:+64526676 None:intergenic
AGGATCTGCGAAAACTGTTA+AGG 0.517573 8:-64526272 MsG0880045792.01.T01:CDS
CTCCTTTATACGTTGGTGCA+AGG 0.531084 8:+64528655 None:intergenic
TCAAAAGGATTGAATCGAAT+CGG 0.532537 8:-64528603 MsG0880045792.01.T01:CDS
AAATAGGAATAATCCAGTCC+TGG 0.541617 8:+64528544 None:intergenic
CATGCAGATCCTATGAAGAC+AGG 0.558786 8:-64526457 MsG0880045792.01.T01:CDS
TGCAAATGTGATGTTTCGGA+AGG 0.562235 8:+64526413 None:intergenic
TTTGAGCGAAGATAAGCTCC+AGG 0.562914 8:+64528621 None:intergenic
GAGAAATCTCCTTTATACGT+TGG 0.568029 8:+64528648 None:intergenic
TTTCATTCCTTCCACAACAC+TGG 0.571917 8:-64526637 MsG0880045792.01.T01:CDS
ATGGGTTGAAGCTTGATTGG+AGG 0.574036 8:-64529181 MsG0880045792.01.T01:intron
ACAGATATAAGGGCCATGAA+TGG 0.578881 8:-64526490 MsG0880045792.01.T01:CDS
CCAGATGAGGCTGTTTCATG+GGG 0.578985 8:-64526304 MsG0880045792.01.T01:CDS
TGTCAGGACTGCCAGTGTTG+TGG 0.586668 8:+64526626 None:intergenic
TATTGTCCAGGATTAACCGA+TGG 0.595026 8:-64526682 MsG0880045792.01.T01:CDS
TGACAACCGTGGTCTTAATG+TGG 0.596650 8:-64526608 MsG0880045792.01.T01:CDS
CGGAAAGTGTCTTCAAATCG+AGG 0.609261 8:-64529410 MsG0880045792.01.T01:CDS
CTTAATGTGGACATAGTGCA+AGG 0.610797 8:-64526595 MsG0880045792.01.T01:CDS
TTCTGGAGCTCATCCAGATG+AGG 0.617682 8:-64526317 MsG0880045792.01.T01:CDS
AACGCCAACATGATGCGTAA+TGG 0.620030 8:-64526391 MsG0880045792.01.T01:CDS
CATGTCACCCAATGAGCCAT+CGG 0.626979 8:+64526666 None:intergenic
TTGAAAACCAGTAGTGAGCA+TGG 0.634888 8:+64529342 None:intergenic
TGCACCATTACGCATCATGT+TGG 0.635711 8:+64526387 None:intergenic
TTACTGACGATTGTAGTGAT+CGG 0.636960 8:-64529142 MsG0880045792.01.T01:CDS
GGAAAGTGTCTTCAAATCGA+GGG 0.644614 8:-64529409 MsG0880045792.01.T01:CDS
TTTGAAGACACTTTCCGGCG+AGG 0.658661 8:+64529416 None:intergenic
GTTGAAGGAACAAACTCATG+AGG 0.661956 8:-64528511 MsG0880045792.01.T01:intron
AGGACTGCCAGTGTTGTGGA+AGG 0.670043 8:+64526630 None:intergenic
TCACCATGTGATGCTGACAA+AGG 0.671310 8:+64529042 None:intergenic
GAGGGTTATGATTTCAACCG+CGG 0.671769 8:-64529391 MsG0880045792.01.T01:CDS
GTTATTGTTACAACTACAGG+TGG 0.672134 8:-64528702 MsG0880045792.01.T01:CDS
CTATGTCCACATTAAGACCA+CGG 0.698384 8:+64526602 None:intergenic
ACTGGCAGTCCTGACAACCG+TGG 0.720073 8:-64526619 MsG0880045792.01.T01:CDS
GCTGTTGATAATCGACGCCG+CGG 0.724424 8:+64529374 None:intergenic
CAACTTGAATGGCTTCACCG+AGG 0.725512 8:+64529311 None:intergenic
CAGATGAGGCTGTTTCATGG+GGG 0.740121 8:-64526303 MsG0880045792.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAATTATAATTTT+GGG - Chr8:64528141-64528160 MsG0880045792.01.T01:intron 0.0%
!! TATTATAAATTAACATTTCA+AGG + Chr8:64527443-64527462 None:intergenic 10.0%
!!! ACATTTTTAGTTTAATATTT+TGG - Chr8:64528182-64528201 MsG0880045792.01.T01:intron 10.0%
!!! ATAATCTTATTGATATTTTT+TGG - Chr8:64528940-64528959 MsG0880045792.01.T01:intron 10.0%
!!! CATTTTTAGTTTAATATTTT+GGG - Chr8:64528183-64528202 MsG0880045792.01.T01:intron 10.0%
!! AACAATATTAAAAAACCATT+TGG + Chr8:64526911-64526930 None:intergenic 15.0%
!! AATATATATGATCTAATCAA+AGG + Chr8:64526816-64526835 None:intergenic 15.0%
!! ATATTATGTTTAATTACTAC+CGG - Chr8:64528237-64528256 MsG0880045792.01.T01:intron 15.0%
!! TAAAATCTATTTCCAATAAA+AGG + Chr8:64528127-64528146 None:intergenic 15.0%
!! AATTTGCAATAATTGTCATT+AGG + Chr8:64527106-64527125 None:intergenic 20.0%
!! AGTTAAAAAAAACAAAGAGA+CGG + Chr8:64526438-64526457 None:intergenic 20.0%
!! ATTTGCAATAATTGTCATTA+GGG + Chr8:64527105-64527124 None:intergenic 20.0%
!! CAAAATTTATTACTGAAATC+TGG + Chr8:64528036-64528055 None:intergenic 20.0%
!! GGAATCATAACTAAAATAAT+TGG - Chr8:64529150-64529169 MsG0880045792.01.T01:CDS 20.0%
!! TACAAAAGAAAGGTTTAAAA+AGG + Chr8:64527315-64527334 None:intergenic 20.0%
!! TATTCTTCATTTCTGTTAAA+GGG + Chr8:64528064-64528083 None:intergenic 20.0%
!! TTCAACATCTGATTAAAAAT+AGG + Chr8:64527145-64527164 None:intergenic 20.0%
!!! AAGAAAAGTTTTAACATTTG+TGG + Chr8:64527408-64527427 None:intergenic 20.0%
!!! AATAAAAGGACATAGTTTTA+AGG + Chr8:64529491-64529510 None:intergenic 20.0%
!!! ATAAAAGGACATAGTTTTAA+GGG + Chr8:64529490-64529509 None:intergenic 20.0%
!!! GTTTAATATTTTGGGTTTAA+AGG - Chr8:64528191-64528210 MsG0880045792.01.T01:intron 20.0%
!!! TATTTTTAATCAGATGTTGA+AGG - Chr8:64527144-64527163 MsG0880045792.01.T01:intron 20.0%
!!! TCTTATTTACTCAATAACTT+CGG - Chr8:64528896-64528915 MsG0880045792.01.T01:intron 20.0%
!!! TTATATTTTACCTCTGATTA+AGG - Chr8:64528559-64528578 MsG0880045792.01.T01:CDS 20.0%
! AAGCTAGAAGTTATTATGAA+AGG - Chr8:64526710-64526729 MsG0880045792.01.T01:CDS 25.0%
! AGATCTAATAATACATCTGT+AGG - Chr8:64527571-64527590 MsG0880045792.01.T01:intron 25.0%
! AGGTATTTGTATAATGTAGT+TGG - Chr8:64527772-64527791 MsG0880045792.01.T01:intron 25.0%
! CATTTGATTAACAACTTGAA+TGG + Chr8:64526373-64526392 None:intergenic 25.0%
! CCAAAGTAATTAAAATCAAC+TGG + Chr8:64528446-64528465 None:intergenic 25.0%
! CCTTGAAAATCTGAATTTAT+TGG - Chr8:64527342-64527361 MsG0880045792.01.T01:intron 25.0%
! CTATTCTTCATTTCTGTTAA+AGG + Chr8:64528065-64528084 None:intergenic 25.0%
! GTTAAAAAAAACAAAGAGAC+GGG + Chr8:64526437-64526456 None:intergenic 25.0%
! TAATAATACATCTGTAGGAA+TGG - Chr8:64527576-64527595 MsG0880045792.01.T01:intron 25.0%
! TAATCAAAGGAAATTGCAAT+AGG + Chr8:64526803-64526822 None:intergenic 25.0%
! TCATATATATTCAAAGATCC+TGG - Chr8:64526825-64526844 MsG0880045792.01.T01:intron 25.0%
! TTAGAATACATATATTCTGC+TGG - Chr8:64528512-64528531 MsG0880045792.01.T01:CDS 25.0%
! TTTGTCAAGGTAATCTAAAT+CGG - Chr8:64527241-64527260 MsG0880045792.01.T01:intron 25.0%
!! AATCATTTCGTTCCTTTTAT+TGG - Chr8:64528112-64528131 MsG0880045792.01.T01:intron 25.0%
!! CCAATAAATTCAGATTTTCA+AGG + Chr8:64527345-64527364 None:intergenic 25.0%
!! GCTTATAAAGTTTTTGTCTT+TGG - Chr8:64526463-64526482 MsG0880045792.01.T01:CDS 25.0%
!!! ACTACATAAGTTTTGTAATG+CGG + Chr8:64527215-64527234 None:intergenic 25.0%
!!! ATGGATGATTTTGAAACAAT+TGG - Chr8:64529129-64529148 MsG0880045792.01.T01:CDS 25.0%
!!! CATTCAAGTTGTTAATCAAA+TGG - Chr8:64526371-64526390 MsG0880045792.01.T01:CDS 25.0%
!!! CCAGTTGATTTTAATTACTT+TGG - Chr8:64528443-64528462 MsG0880045792.01.T01:intron 25.0%
!!! TAGTTTTAAGGGATATAGTA+CGG + Chr8:64529479-64529498 None:intergenic 25.0%
!!! TCATAATAACTTCTAGCTTA+TGG + Chr8:64526709-64526728 None:intergenic 25.0%
AAAATGCCAAAATGTTACGT+CGG + Chr8:64528420-64528439 None:intergenic 30.0%
AATACTGCACAAGAATTTGA+TGG - Chr8:64529324-64529343 MsG0880045792.01.T01:CDS 30.0%
AATATAATCTCCTTCATCAG+AGG + Chr8:64528546-64528565 None:intergenic 30.0%
AATATTCCAGTTTATTGTCC+AGG - Chr8:64528976-64528995 MsG0880045792.01.T01:intron 30.0%
ACTTCTAATCTTATCTCTTC+TGG - Chr8:64526584-64526603 MsG0880045792.01.T01:CDS 30.0%
AGGAAACTACAGTATAACAA+TGG + Chr8:64528825-64528844 None:intergenic 30.0%
AGTTTACACCTGCTATATAT+TGG - Chr8:64527835-64527854 MsG0880045792.01.T01:intron 30.0%
ATTATGTTCTTGTTGAGTCA+TGG - Chr8:64527882-64527901 MsG0880045792.01.T01:intron 30.0%
CACAAATACATAATATCCCA+AGG + Chr8:64527981-64528000 None:intergenic 30.0%
CATGTTATTGTTACAACTAC+AGG - Chr8:64526965-64526984 MsG0880045792.01.T01:intron 30.0%
CATTGTATAAAAGAGAGAAC+TGG + Chr8:64527535-64527554 None:intergenic 30.0%
CTTTATATATTAAAGCCACC+AGG + Chr8:64526846-64526865 None:intergenic 30.0%
GAATCGAATCGGTAATTTAT+TGG - Chr8:64527078-64527097 MsG0880045792.01.T01:intron 30.0%
GAGTCATGGTTTCTAATAAT+TGG - Chr8:64527896-64527915 MsG0880045792.01.T01:intron 30.0%
GATATTACGTTTGATTGTTC+TGG - Chr8:64527923-64527942 MsG0880045792.01.T01:intron 30.0%
GCAGTAAAGAGTAAAAAGAA+TGG + Chr8:64529109-64529128 None:intergenic 30.0%
GGGATATTATGTATTTGTGA+TGG - Chr8:64527982-64528001 MsG0880045792.01.T01:intron 30.0%
GTTACATACAAAATGCAACA+TGG - Chr8:64528857-64528876 MsG0880045792.01.T01:intron 30.0%
TATATATTCAAAGATCCTGG+TGG - Chr8:64526828-64526847 MsG0880045792.01.T01:intron 30.0%
TCAAAAGGATTGAATCGAAT+CGG - Chr8:64527067-64527086 MsG0880045792.01.T01:intron 30.0%
TGACAATTATTGCAAATTCC+AGG - Chr8:64527108-64527127 MsG0880045792.01.T01:intron 30.0%
TGATTGATTAATTGCCAATG+AGG + Chr8:64526752-64526771 None:intergenic 30.0%
! AACAAGTAGCGAAAGTATAT+AGG + Chr8:64529429-64529448 None:intergenic 30.0%
! AAGACAGGCATGATTATTTT+AGG - Chr8:64529228-64529247 MsG0880045792.01.T01:intron 30.0%
! ATGTAGTTCAGTTTTTGTCA+AGG - Chr8:64527228-64527247 MsG0880045792.01.T01:intron 30.0%
! TATTTTACCTCTGATTAAGG+AGG - Chr8:64528562-64528581 MsG0880045792.01.T01:CDS 30.0%
! TCTTTTTACTCTTTACTGCA+TGG - Chr8:64529110-64529129 MsG0880045792.01.T01:CDS 30.0%
!! CTACATAAGTTTTGTAATGC+GGG + Chr8:64527214-64527233 None:intergenic 30.0%
!! CTTAATAAGCATGTTTTGAG+TGG - Chr8:64527632-64527651 MsG0880045792.01.T01:intron 30.0%
!! TGAAAACTTGCTAAACCAAA+TGG - Chr8:64526893-64526912 MsG0880045792.01.T01:intron 30.0%
!!! AAGTTTTTGTCTTTGGAACA+TGG - Chr8:64526470-64526489 MsG0880045792.01.T01:CDS 30.0%
!!! AGTTTTTGTCTTTGGAACAT+GGG - Chr8:64526471-64526490 MsG0880045792.01.T01:CDS 30.0%
!!! TATCTTCCTTTTTTGACAGA+AGG - Chr8:64528629-64528648 MsG0880045792.01.T01:CDS 30.0%
!!! TTTTTTTCAGAAGACGACAT+TGG + Chr8:64526171-64526190 None:intergenic 30.0%
AAAAAAACAAAGAGACGGGT+TGG + Chr8:64526433-64526452 None:intergenic 35.0%
AAAAGAACCTCCTTAATCAG+AGG + Chr8:64528572-64528591 None:intergenic 35.0%
AAATAGGAATAATCCAGTCC+TGG + Chr8:64527129-64527148 None:intergenic 35.0%
AATCAAACCAGACATTGAAC+CGG + Chr8:64528304-64528323 None:intergenic 35.0%
AATGAGGAAGTCATTGTCTA+TGG + Chr8:64526736-64526755 None:intergenic 35.0%
ACACCTGCTATATATTGGTA+GGG - Chr8:64527840-64527859 MsG0880045792.01.T01:intron 35.0%
ACTGAAATCTGGATGCATAT+AGG + Chr8:64528025-64528044 None:intergenic 35.0%
AGGTGAGTGATACAAAAGAA+AGG + Chr8:64527325-64527344 None:intergenic 35.0%
ATAATCATGCCTGTCTTCAT+AGG + Chr8:64529225-64529244 None:intergenic 35.0%
ATAGACAATGACTTCCTCAT+TGG - Chr8:64526735-64526754 MsG0880045792.01.T01:CDS 35.0%
ATCACTACAATCGTCAGTAA+TGG + Chr8:64526528-64526547 None:intergenic 35.0%
ATCCAAGTTAATAGCTCGTT+TGG - Chr8:64528665-64528684 MsG0880045792.01.T01:CDS 35.0%
ATTATTGCAAATTCCAGGAC+TGG - Chr8:64527113-64527132 MsG0880045792.01.T01:intron 35.0%
CCTGTAGAATAACATGAGTA+CGG + Chr8:64526943-64526962 None:intergenic 35.0%
CTGAAATCTGGATGCATATA+GGG + Chr8:64528024-64528043 None:intergenic 35.0%
GAATTTGATGGAAGTGATTC+TGG - Chr8:64529336-64529355 MsG0880045792.01.T01:CDS 35.0%
GACGAAATGACAATAGCTAT+TGG - Chr8:64528343-64528362 MsG0880045792.01.T01:intron 35.0%
GAGAAATCTCCTTTATACGT+TGG + Chr8:64527025-64527044 None:intergenic 35.0%
GTTAATCCTGGACAATAAAC+TGG + Chr8:64528985-64529004 None:intergenic 35.0%
GTTATTGTTACAACTACAGG+TGG - Chr8:64526968-64526987 MsG0880045792.01.T01:intron 35.0%
TAAAGTTCCACGTTGCTTAA+AGG + Chr8:64527488-64527507 None:intergenic 35.0%
TACACCTGCTATATATTGGT+AGG - Chr8:64527839-64527858 MsG0880045792.01.T01:intron 35.0%
TACTAGTAGGAAGGAATGTA+TGG - Chr8:64527695-64527714 MsG0880045792.01.T01:intron 35.0%
TATTCTCCAGCAAGGTTTAA+TGG + Chr8:64528279-64528298 None:intergenic 35.0%
TCAAGGTAATCTAAATCGGA+TGG - Chr8:64527245-64527264 MsG0880045792.01.T01:intron 35.0%
TCACTACAATCGTCAGTAAT+GGG + Chr8:64526527-64526546 None:intergenic 35.0%
TCCAAGTTAATAGCTCGTTT+GGG - Chr8:64528666-64528685 MsG0880045792.01.T01:CDS 35.0%
TGGCAATGCAACAGATATAA+GGG - Chr8:64529170-64529189 MsG0880045792.01.T01:CDS 35.0%
TGTAGGAATGGAAATACTGA+CGG - Chr8:64527588-64527607 MsG0880045792.01.T01:intron 35.0%
TTACTGACGATTGTAGTGAT+CGG - Chr8:64526528-64526547 MsG0880045792.01.T01:CDS 35.0%
TTCCTTCCTACTAGTATCAT+CGG + Chr8:64527691-64527710 None:intergenic 35.0%
TTGATTCCGATGATACTAGT+AGG - Chr8:64527682-64527701 MsG0880045792.01.T01:intron 35.0%
TTGGCAATGCAACAGATATA+AGG - Chr8:64529169-64529188 MsG0880045792.01.T01:CDS 35.0%
! AAAATGATGATGCAGAAGAG+AGG - Chr8:64527752-64527771 MsG0880045792.01.T01:intron 35.0%
! AAACGAGCTATTAACTTGGA+TGG + Chr8:64528666-64528685 None:intergenic 35.0%
! TAAGTGGTGCATGTTTGTTA+AGG - Chr8:64527809-64527828 MsG0880045792.01.T01:intron 35.0%
! TGCATTTTGTATGTAACTGC+AGG + Chr8:64528854-64528873 None:intergenic 35.0%
!! ATGTTTTGAGTGGCAATAGT+AGG - Chr8:64527642-64527661 MsG0880045792.01.T01:intron 35.0%
!!! ACAGGCATGATTATTTTAGG+AGG - Chr8:64529231-64529250 MsG0880045792.01.T01:intron 35.0%
!!! TTCGGATTTTTTGAAGACTG+TGG + Chr8:64526232-64526251 None:intergenic 35.0%
AAAGGAGATTTCTCTTTGCC+TGG - Chr8:64527031-64527050 MsG0880045792.01.T01:intron 40.0%
ACAGATATAAGGGCCATGAA+TGG - Chr8:64529180-64529199 MsG0880045792.01.T01:intron 40.0%
ACATACACAAGTGAGGAACT+GGG - Chr8:64528372-64528391 MsG0880045792.01.T01:intron 40.0%
ACTGCACCTTCTGTCAAAAA+AGG + Chr8:64528638-64528657 None:intergenic 40.0%
AGGATCTGCGAAAACTGTTA+AGG - Chr8:64529398-64529417 MsG0880045792.01.T01:CDS 40.0%
ATGAAAGCTCCTACCTTTAC+TGG - Chr8:64528703-64528722 MsG0880045792.01.T01:CDS 40.0%
ATGGAAATACTGACGGAGAA+AGG - Chr8:64527595-64527614 MsG0880045792.01.T01:intron 40.0%
ATGTACAGCTTCACCATTCA+TGG + Chr8:64529196-64529215 None:intergenic 40.0%
CCGTACTCATGTTATTCTAC+AGG - Chr8:64526940-64526959 MsG0880045792.01.T01:intron 40.0%
CGATTGTAGTGATCGGAAAT+CGG - Chr8:64526535-64526554 MsG0880045792.01.T01:CDS 40.0%
CTAAATCGGATGGTTTGACT+GGG - Chr8:64527255-64527274 MsG0880045792.01.T01:intron 40.0%
CTATGTCCACATTAAGACCA+CGG + Chr8:64529071-64529090 None:intergenic 40.0%
CTTAATGTGGACATAGTGCA+AGG - Chr8:64529075-64529094 MsG0880045792.01.T01:CDS 40.0%
GAAACTCACATACACAAGTG+AGG - Chr8:64528365-64528384 MsG0880045792.01.T01:intron 40.0%
GCAAGGTTTAATGGTTAGAC+CGG + Chr8:64528270-64528289 None:intergenic 40.0%
GCGTTGCAAATGTGATGTTT+CGG + Chr8:64529264-64529283 None:intergenic 40.0%
GGATAAAGAACCTCTGATGA+AGG - Chr8:64528533-64528552 MsG0880045792.01.T01:CDS 40.0%
GGCATTTGTTCTGATGTAAG+TGG - Chr8:64527793-64527812 MsG0880045792.01.T01:intron 40.0%
GTCTAACCATTAAACCTTGC+TGG - Chr8:64528270-64528289 MsG0880045792.01.T01:intron 40.0%
GTTATCTCCTTTAAGCAACG+TGG - Chr8:64527478-64527497 MsG0880045792.01.T01:intron 40.0%
GTTGAAGGAACAAACTCATG+AGG - Chr8:64527159-64527178 MsG0880045792.01.T01:intron 40.0%
GTTTAAAAAGGTCTGACCCT+CGG + Chr8:64527303-64527322 None:intergenic 40.0%
TATGTAACTGCAGGACATCA+AGG + Chr8:64528845-64528864 None:intergenic 40.0%
TATTGTCCAGGATTAACCGA+TGG - Chr8:64528988-64529007 MsG0880045792.01.T01:intron 40.0%
TCCCAAACGAGCTATTAACT+TGG + Chr8:64528670-64528689 None:intergenic 40.0%
TCTAAATCGGATGGTTTGAC+TGG - Chr8:64527254-64527273 MsG0880045792.01.T01:intron 40.0%
TGAAAGCTCCTACCTTTACT+GGG - Chr8:64528704-64528723 MsG0880045792.01.T01:CDS 40.0%
TGCAAATGTGATGTTTCGGA+AGG + Chr8:64529260-64529279 None:intergenic 40.0%
TTCCGATGATACTAGTAGGA+AGG - Chr8:64527686-64527705 MsG0880045792.01.T01:intron 40.0%
TTGAAAACCAGTAGTGAGCA+TGG + Chr8:64526331-64526350 None:intergenic 40.0%
TTTCATTCCTTCCACAACAC+TGG - Chr8:64529033-64529052 MsG0880045792.01.T01:intron 40.0%
! AACATGGGTTGAAGCTTGAT+TGG - Chr8:64526486-64526505 MsG0880045792.01.T01:CDS 40.0%
! CTCGATTTGAAGACACTTTC+CGG + Chr8:64526262-64526281 None:intergenic 40.0%
! GCTACGTGTAAAGTGTTTCT+GGG - Chr8:64526557-64526576 MsG0880045792.01.T01:CDS 40.0%
!! AATTACTACCGGTTCAACTC+CGG - Chr8:64528248-64528267 MsG0880045792.01.T01:intron 40.0%
!! CCATGTGATTTTAGTGCCTT+GGG - Chr8:64527962-64527981 MsG0880045792.01.T01:intron 40.0%
!! GGAAAGTGTCTTCAAATCGA+GGG - Chr8:64526261-64526280 MsG0880045792.01.T01:CDS 40.0%
!!! CTTTGGTTTTTGTCAATGCC+TGG - Chr8:64528460-64528479 MsG0880045792.01.T01:intron 40.0%
!!! GGCATGATTATTTTAGGAGG+TGG - Chr8:64529234-64529253 MsG0880045792.01.T01:intron 40.0%
!!! TTTTTTGACAGAAGGTGCAG+TGG - Chr8:64528637-64528656 MsG0880045792.01.T01:CDS 40.0%
AAAAAATCCGAAAGCCTCGC+CGG - Chr8:64526240-64526259 MsG0880045792.01.T01:CDS 45.0%
AACCTTGCTGGAGAATACAC+CGG - Chr8:64528282-64528301 MsG0880045792.01.T01:intron 45.0%
AACGCCAACATGATGCGTAA+TGG - Chr8:64529279-64529298 MsG0880045792.01.T01:intron 45.0%
ACATTAAGACCACGGTTGTC+AGG + Chr8:64529063-64529082 None:intergenic 45.0%
ACGTTTGATTGTTCTGGTGC+TGG - Chr8:64527929-64527948 MsG0880045792.01.T01:intron 45.0%
AGGATTAACCGATGGCTCAT+TGG - Chr8:64528996-64529015 MsG0880045792.01.T01:intron 45.0%
ATGCCTGGAGTCACATTTAG+TGG - Chr8:64528475-64528494 MsG0880045792.01.T01:intron 45.0%
ATGGTGTGTAGGTAGCAGTT+GGG - Chr8:64527714-64527733 MsG0880045792.01.T01:intron 45.0%
CACATACACAAGTGAGGAAC+TGG - Chr8:64528371-64528390 MsG0880045792.01.T01:intron 45.0%
CATACACAAGTGAGGAACTG+GGG - Chr8:64528373-64528392 MsG0880045792.01.T01:intron 45.0%
CATGCAGATCCTATGAAGAC+AGG - Chr8:64529213-64529232 MsG0880045792.01.T01:intron 45.0%
CTACCTTTACTGGGCATACA+AGG - Chr8:64528713-64528732 MsG0880045792.01.T01:intron 45.0%
CTCAAATCCATGCTCACTAC+TGG - Chr8:64526321-64526340 MsG0880045792.01.T01:CDS 45.0%
CTCCTTTATACGTTGGTGCA+AGG + Chr8:64527018-64527037 None:intergenic 45.0%
CTTCCTTTGTCAGCATCACA+TGG - Chr8:64526625-64526644 MsG0880045792.01.T01:CDS 45.0%
CTTGTATGCCCAGTAAAGGT+AGG + Chr8:64528715-64528734 None:intergenic 45.0%
GAGGGTTATGATTTCAACCG+CGG - Chr8:64526279-64526298 MsG0880045792.01.T01:CDS 45.0%
GCTCCCTACCAATATATAGC+AGG + Chr8:64527846-64527865 None:intergenic 45.0%
GGAAGGAATGTATGGTGTGT+AGG - Chr8:64527703-64527722 MsG0880045792.01.T01:intron 45.0%
GGAGCTTATCTTCGCTCAAA+AGG - Chr8:64527052-64527071 MsG0880045792.01.T01:intron 45.0%
GGATTAACCGATGGCTCATT+GGG - Chr8:64528997-64529016 MsG0880045792.01.T01:intron 45.0%
GTTTCATGGGGGAAAATACG+AGG - Chr8:64529378-64529397 MsG0880045792.01.T01:CDS 45.0%
TATGGTGTGTAGGTAGCAGT+TGG - Chr8:64527713-64527732 MsG0880045792.01.T01:intron 45.0%
TCACCATGTGATGCTGACAA+AGG + Chr8:64526631-64526650 None:intergenic 45.0%
TGACCACTAAATGTGACTCC+AGG + Chr8:64528481-64528500 None:intergenic 45.0%
TGCACCATTACGCATCATGT+TGG + Chr8:64529286-64529305 None:intergenic 45.0%
TGCCTTGCACCAACGTATAA+AGG - Chr8:64527013-64527032 MsG0880045792.01.T01:intron 45.0%
TTGCCTTGTATGCCCAGTAA+AGG + Chr8:64528719-64528738 None:intergenic 45.0%
TTTGAGCGAAGATAAGCTCC+AGG + Chr8:64527052-64527071 None:intergenic 45.0%
! AATGAGCCATCGGTTAATCC+TGG + Chr8:64528997-64529016 None:intergenic 45.0%
! ATCCAGATGAGGCTGTTTCA+TGG - Chr8:64529364-64529383 MsG0880045792.01.T01:CDS 45.0%
! ATGGGTTGAAGCTTGATTGG+AGG - Chr8:64526489-64526508 MsG0880045792.01.T01:CDS 45.0%
! CCCAAGGCACTAAAATCACA+TGG + Chr8:64527965-64527984 None:intergenic 45.0%
! GGCTACGTGTAAAGTGTTTC+TGG - Chr8:64526556-64526575 MsG0880045792.01.T01:CDS 45.0%
! TCCAGATGAGGCTGTTTCAT+GGG - Chr8:64529365-64529384 MsG0880045792.01.T01:CDS 45.0%
! TGACAACCGTGGTCTTAATG+TGG - Chr8:64529062-64529081 MsG0880045792.01.T01:CDS 45.0%
!! CGGAAAGTGTCTTCAAATCG+AGG - Chr8:64526260-64526279 MsG0880045792.01.T01:CDS 45.0%
!! GAATACACCGGTTCAATGTC+TGG - Chr8:64528294-64528313 MsG0880045792.01.T01:intron 45.0%
!! GCCATGTGATTTTAGTGCCT+TGG - Chr8:64527961-64527980 MsG0880045792.01.T01:intron 45.0%
!! GGTTTTCAAGCATCCAACCT+CGG - Chr8:64526342-64526361 MsG0880045792.01.T01:CDS 45.0%
!!! GATTTTAAAAATTATAATTT+TGG - Chr8:64528140-64528159 MsG0880045792.01.T01:intron 5.0%
AACCGGTGTATTCTCCAGCA+AGG + Chr8:64528287-64528306 None:intergenic 50.0%
CAACTTGAATGGCTTCACCG+AGG + Chr8:64526362-64526381 None:intergenic 50.0%
CATGTCACCCAATGAGCCAT+CGG + Chr8:64529007-64529026 None:intergenic 50.0%
CGGATGGTTTGACTGGGAAT+TGG - Chr8:64527261-64527280 MsG0880045792.01.T01:intron 50.0%
CTGGGAATTGGACCTATGTC+CGG - Chr8:64527273-64527292 MsG0880045792.01.T01:intron 50.0%
TGGTGTGTAGGTAGCAGTTG+GGG - Chr8:64527715-64527734 MsG0880045792.01.T01:intron 50.0%
TGGTTAGACCGGAGTTGAAC+CGG + Chr8:64528259-64528278 None:intergenic 50.0%
TTGAATGGCTTCACCGAGGT+TGG + Chr8:64526358-64526377 None:intergenic 50.0%
TTTGAAGACACTTTCCGGCG+AGG + Chr8:64526257-64526276 None:intergenic 50.0%
! CAGATGAGGCTGTTTCATGG+GGG - Chr8:64529367-64529386 MsG0880045792.01.T01:CDS 50.0%
! CCAGATGAGGCTGTTTCATG+GGG - Chr8:64529366-64529385 MsG0880045792.01.T01:CDS 50.0%
!! GTTCTGGTGCTGGTTCAACT+TGG - Chr8:64527939-64527958 MsG0880045792.01.T01:intron 50.0%
!! TTCTGGAGCTCATCCAGATG+AGG - Chr8:64529353-64529372 MsG0880045792.01.T01:CDS 50.0%
AAATGTTACGTCGGACGCCG+TGG + Chr8:64528411-64528430 None:intergenic 55.0%
ACACTTTCCGGCGAGGCTTT+CGG + Chr8:64526250-64526269 None:intergenic 55.0%
ACCTATGTCCGGAAGACCGA+GGG - Chr8:64527284-64527303 MsG0880045792.01.T01:intron 55.0%
AGGACTGCCAGTGTTGTGGA+AGG + Chr8:64529043-64529062 None:intergenic 55.0%
CCCCATGAAACAGCCTCATC+TGG + Chr8:64529369-64529388 None:intergenic 55.0%
GGTGTGTAGGTAGCAGTTGG+GGG - Chr8:64527716-64527735 MsG0880045792.01.T01:intron 55.0%
GTGTGTAGGTAGCAGTTGGG+GGG - Chr8:64527717-64527736 MsG0880045792.01.T01:intron 55.0%
TGTCAGGACTGCCAGTGTTG+TGG + Chr8:64529047-64529066 None:intergenic 55.0%
! CGGCGTCCGACGTAACATTT+TGG - Chr8:64528411-64528430 MsG0880045792.01.T01:intron 55.0%
!! GCTGTTGATAATCGACGCCG+CGG + Chr8:64526299-64526318 None:intergenic 55.0%
ACCCTCGGTCTTCCGGACAT+AGG + Chr8:64527288-64527307 None:intergenic 60.0%
ACTGGCAGTCCTGACAACCG+TGG - Chr8:64529051-64529070 MsG0880045792.01.T01:CDS 60.0%
AGGTCTGACCCTCGGTCTTC+CGG + Chr8:64527295-64527314 None:intergenic 60.0%
GACCTATGTCCGGAAGACCG+AGG - Chr8:64527283-64527302 MsG0880045792.01.T01:intron 60.0%
TGGGGTTCGAACCCCAGCCA+CGG - Chr8:64528391-64528410 MsG0880045792.01.T01:intron 65.0%
TTACGTCGGACGCCGTGGCT+GGG + Chr8:64528406-64528425 None:intergenic 65.0%
GTTACGTCGGACGCCGTGGC+TGG + Chr8:64528407-64528426 None:intergenic 70.0%
TACGTCGGACGCCGTGGCTG+GGG + Chr8:64528405-64528424 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 64526171 64529521 64526171 ID=MsG0880045792.01;Name=MsG0880045792.01
Chr8 mRNA 64526171 64529521 64526171 ID=MsG0880045792.01.T01;Parent=MsG0880045792.01;Name=MsG0880045792.01.T01;_AED=0.47;_eAED=0.53;_QI=0|0.66|0.5|1|0.66|0.75|4|0|395
Chr8 exon 64529300 64529521 64529300 ID=MsG0880045792.01.T01:exon:24473;Parent=MsG0880045792.01.T01
Chr8 exon 64529046 64529192 64529046 ID=MsG0880045792.01.T01:exon:24472;Parent=MsG0880045792.01.T01
Chr8 exon 64528512 64528730 64528512 ID=MsG0880045792.01.T01:exon:24471;Parent=MsG0880045792.01.T01
Chr8 exon 64526171 64526767 64526171 ID=MsG0880045792.01.T01:exon:24470;Parent=MsG0880045792.01.T01
Chr8 CDS 64529300 64529521 64529300 ID=MsG0880045792.01.T01:cds;Parent=MsG0880045792.01.T01
Chr8 CDS 64529046 64529192 64529046 ID=MsG0880045792.01.T01:cds;Parent=MsG0880045792.01.T01
Chr8 CDS 64528512 64528730 64528512 ID=MsG0880045792.01.T01:cds;Parent=MsG0880045792.01.T01
Chr8 CDS 64526171 64526767 64526171 ID=MsG0880045792.01.T01:cds;Parent=MsG0880045792.01.T01
Gene Sequence

>MsG0880045792.01.T01

ATGTCGTCTTCTGAAAAAAAGGAAGAAGAAGATGACGCAGTCATGTCATCAGTTCACTCCACAGTCTTCAAAAAATCCGAAAGCCTCGCCGGAAAGTGTCTTCAAATCGAGGGTTATGATTTCAACCGCGGCGTCGATTATCAACAGCTTCTCAAATCCATGCTCACTACTGGTTTTCAAGCATCCAACCTCGGTGAAGCCATTCAAGTTGTTAATCAAATGCTTGATTGGAGGTTGATTGATGAACCCATTACTGACGATTGTAGTGATCGGAAATCGGCTACGTGTAAAGTGTTTCTGGGTTTTACTTCTAATCTTATCTCTTCTGGTGTTAGAGATGTTATTCGCTTCCTTTGTCAGCATCACATGGTTCATGTTATTGTTACAACTACAGGTGGTATTGAAGAAGATCTTATAAAGTGCCTTGCACCAACGTATAAAGGAGATTTCTCTTTGCCTGGAGCTTATCTTCGCTCAAAAGGATTGAATCGAATCGGTAATTTATTGGTCCCTAATGACAATTATTGCAAATTCCAGGACTGGATTATTCCTATTTTTAATCAGATGTTGAAGGAACAAACTCATGAGAAAGTTGCACATAGTATAATCTTATTGATATTTTTTGGTGTTTTGCAGAACAATATTCCAGTTTATTGTCCAGGATTAACCGATGGCTCATTGGGTGACATGCTGTACTTTCATTCCTTCCACAACACTGGCAGTCCTGACAACCGTGGTCTTAATGTGGACATAGTGCAAGGTTTTTACTCCATTCTTTTTACTCTTTACTGCATGGATGATTTTGAAACAATTGGAATCATAACTAAAATAATTGGCAATGCAACAGATATAAGGGCCATGAATGGTGAAGCTGTACATGCAGATCCTATGAAGACAGGCATGATTATTTTAGGAGGTGGCCTTCCGAAACATCACATTTGCAACGCCAACATGATGCGTAATGGTGCAGACTATGCAGTTTTTATTAATACTGCACAAGAATTTGATGGAAGTGATTCTGGAGCTCATCCAGATGAGGCTGTTTCATGGGGGAAAATACGAGGATCTGCGAAAACTGTTAAGGTACATCCTATATACTTTCGCTACTTGTTTTCTTTACAGAATACTCGAAACTTTTGCCGTACTATATCCCTTAAAACTATGTCCTTTTATTTCACTAAACCA
Protein sequence

>MsG0880045792.01.T01

MSSSEKKEEEDDAVMSSVHSTVFKKSESLAGKCLQIEGYDFNRGVDYQQLLKSMLTTGFQASNLGEAIQVVNQMLDWRLIDEPITDDCSDRKSATCKVFLGFTSNLISSGVRDVIRFLCQHHMVHVIVTTTGGIEEDLIKCLAPTYKGDFSLPGAYLRSKGLNRIGNLLVPNDNYCKFQDWIIPIFNQMLKEQTHEKVAHSIILLIFFGVLQNNIPVYCPGLTDGSLGDMLYFHSFHNTGSPDNRGLNVDIVQGFYSILFTLYCMDDFETIGIITKIIGNATDIRAMNGEAVHADPMKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGAHPDEAVSWGKIRGSAKTVKVHPIYFRYLFSLQNTRNFCRTISLKTMSFYFTKP