Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045957.01.T01 | XP_027348637.1 | 65.495 | 455 | 72 | 14 | 1 | 381 | 21 | 464 | 0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045957.01.T01 | Q9SN22 | 48.571 | 420 | 150 | 13 | 12 | 383 | 9 | 410 | 1.99E-123 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045957.01.T01 | G7JCU8 | 96.029 | 277 | 10 | 1 | 1 | 276 | 25 | 301 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880045957.01 | MsG0880045975.01 | 0.843842 | 1.092271e-58 | 1.730900e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045957.01.T01 | MTR_4g095500 | 96.029 | 277 | 10 | 1 | 1 | 276 | 25 | 301 | 0.0 | 529 |
| MsG0880045957.01.T01 | MTR_4g095500 | 96.386 | 83 | 3 | 0 | 300 | 382 | 387 | 469 | 1.58e-51 | 179 |
| MsG0880045957.01.T01 | MTR_5g015950 | 53.778 | 450 | 137 | 12 | 1 | 382 | 1 | 447 | 3.80e-144 | 417 |
| MsG0880045957.01.T01 | MTR_3g053270 | 53.778 | 450 | 137 | 12 | 1 | 382 | 1 | 447 | 3.80e-144 | 417 |
| MsG0880045957.01.T01 | MTR_2g089100 | 38.592 | 412 | 185 | 9 | 27 | 382 | 45 | 444 | 3.30e-84 | 264 |
| MsG0880045957.01.T01 | MTR_5g015490 | 28.141 | 398 | 217 | 10 | 34 | 382 | 114 | 491 | 1.25e-39 | 147 |
| MsG0880045957.01.T01 | MTR_4g097080 | 26.817 | 399 | 219 | 9 | 32 | 382 | 131 | 504 | 2.76e-39 | 146 |
| MsG0880045957.01.T01 | MTR_2g099110 | 32.609 | 230 | 135 | 6 | 27 | 255 | 67 | 277 | 2.55e-29 | 118 |
| MsG0880045957.01.T01 | MTR_4g133660 | 27.612 | 402 | 210 | 12 | 31 | 381 | 172 | 543 | 5.85e-28 | 115 |
| MsG0880045957.01.T01 | MTR_8g442410 | 25.897 | 390 | 224 | 10 | 35 | 380 | 156 | 524 | 9.93e-28 | 114 |
| MsG0880045957.01.T01 | MTR_5g097480 | 26.263 | 396 | 220 | 11 | 31 | 380 | 174 | 543 | 6.88e-27 | 112 |
| MsG0880045957.01.T01 | MTR_3g089055 | 25.127 | 394 | 225 | 7 | 32 | 380 | 196 | 564 | 2.81e-26 | 110 |
| MsG0880045957.01.T01 | MTR_3g089055 | 25.127 | 394 | 225 | 7 | 32 | 380 | 201 | 569 | 2.86e-26 | 110 |
| MsG0880045957.01.T01 | MTR_1g029420 | 24.552 | 391 | 231 | 7 | 32 | 380 | 223 | 591 | 1.13e-25 | 108 |
| MsG0880045957.01.T01 | MTR_7g027190 | 25.510 | 392 | 228 | 9 | 34 | 380 | 300 | 672 | 1.33e-25 | 108 |
| MsG0880045957.01.T01 | MTR_8g020840 | 26.750 | 400 | 231 | 11 | 27 | 380 | 164 | 547 | 1.20e-24 | 105 |
| MsG0880045957.01.T01 | MTR_2g082090 | 24.495 | 396 | 227 | 9 | 31 | 380 | 209 | 578 | 3.46e-24 | 104 |
| MsG0880045957.01.T01 | MTR_5g094450 | 23.171 | 410 | 252 | 10 | 13 | 380 | 143 | 531 | 7.25e-24 | 103 |
| MsG0880045957.01.T01 | MTR_3g065980 | 25.000 | 400 | 213 | 13 | 35 | 380 | 173 | 539 | 8.04e-24 | 103 |
| MsG0880045957.01.T01 | MTR_4g064200 | 24.873 | 394 | 225 | 11 | 34 | 382 | 284 | 651 | 5.28e-23 | 101 |
| MsG0880045957.01.T01 | MTR_2g097410 | 23.116 | 398 | 239 | 10 | 31 | 383 | 368 | 743 | 1.24e-22 | 100 |
| MsG0880045957.01.T01 | MTR_3g056110 | 23.472 | 409 | 242 | 11 | 16 | 380 | 160 | 541 | 9.23e-22 | 97.4 |
| MsG0880045957.01.T01 | MTR_4g064160 | 22.613 | 398 | 239 | 10 | 31 | 383 | 313 | 686 | 5.91e-20 | 92.0 |
| MsG0880045957.01.T01 | MTR_4g064150 | 23.666 | 431 | 252 | 15 | 3 | 383 | 332 | 735 | 1.54e-19 | 90.9 |
| MsG0880045957.01.T01 | MTR_4g064180 | 24.190 | 401 | 228 | 15 | 31 | 381 | 251 | 625 | 2.68e-19 | 90.1 |
| MsG0880045957.01.T01 | MTR_4g064120 | 23.058 | 399 | 235 | 14 | 31 | 381 | 251 | 625 | 4.80e-19 | 89.4 |
| MsG0880045957.01.T01 | MTR_2g097310 | 22.864 | 398 | 236 | 13 | 31 | 383 | 269 | 640 | 3.76e-18 | 86.7 |
| MsG0880045957.01.T01 | MTR_7g074650 | 23.454 | 388 | 220 | 13 | 37 | 382 | 441 | 793 | 1.86e-15 | 78.6 |
| MsG0880045957.01.T01 | MTR_5g009080 | 25.769 | 260 | 151 | 7 | 34 | 290 | 56 | 276 | 3.09e-13 | 71.2 |
| MsG0880045957.01.T01 | MTR_1g096030 | 21.696 | 401 | 238 | 15 | 34 | 380 | 80 | 458 | 1.64e-12 | 68.9 |
| MsG0880045957.01.T01 | MTR_4g077760 | 23.174 | 397 | 230 | 14 | 29 | 380 | 188 | 554 | 4.67e-12 | 67.8 |
| MsG0880045957.01.T01 | MTR_1g069725 | 22.762 | 391 | 221 | 14 | 34 | 380 | 109 | 462 | 5.49e-12 | 67.4 |
| MsG0880045957.01.T01 | MTR_3g022830 | 24.060 | 266 | 167 | 7 | 35 | 294 | 26 | 262 | 1.33e-11 | 66.2 |
| MsG0880045957.01.T01 | MTR_4g076140 | 24.715 | 263 | 161 | 7 | 15 | 271 | 31 | 262 | 1.46e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045957.01.T01 | AT3G49950 | 48.571 | 420 | 150 | 13 | 12 | 383 | 9 | 410 | 2.02e-124 | 365 |
| MsG0880045957.01.T01 | AT4G37650 | 29.048 | 420 | 231 | 12 | 13 | 383 | 130 | 531 | 1.13e-40 | 151 |
| MsG0880045957.01.T01 | AT5G67411 | 43.204 | 206 | 72 | 6 | 158 | 322 | 1 | 202 | 7.75e-35 | 127 |
| MsG0880045957.01.T01 | AT2G04890 | 25.187 | 401 | 228 | 10 | 21 | 380 | 43 | 412 | 4.00e-26 | 108 |
| MsG0880045957.01.T01 | AT1G50600 | 23.399 | 406 | 244 | 9 | 17 | 380 | 145 | 525 | 1.01e-25 | 108 |
| MsG0880045957.01.T01 | AT1G50600 | 23.399 | 406 | 244 | 9 | 17 | 380 | 216 | 596 | 1.15e-25 | 108 |
| MsG0880045957.01.T01 | AT1G50600 | 23.399 | 406 | 244 | 9 | 17 | 380 | 220 | 600 | 1.21e-25 | 108 |
| MsG0880045957.01.T01 | AT5G17490 | 23.773 | 387 | 226 | 8 | 33 | 380 | 159 | 515 | 4.03e-24 | 104 |
| MsG0880045957.01.T01 | AT5G48150 | 25.362 | 414 | 229 | 12 | 16 | 380 | 107 | 489 | 9.38e-24 | 102 |
| MsG0880045957.01.T01 | AT5G48150 | 25.362 | 414 | 229 | 12 | 16 | 380 | 107 | 489 | 9.38e-24 | 102 |
| MsG0880045957.01.T01 | AT5G48150 | 25.362 | 414 | 229 | 12 | 16 | 380 | 107 | 489 | 9.38e-24 | 102 |
| MsG0880045957.01.T01 | AT5G48150 | 25.362 | 414 | 229 | 12 | 16 | 380 | 107 | 489 | 9.38e-24 | 102 |
| MsG0880045957.01.T01 | AT1G21450 | 23.214 | 392 | 236 | 8 | 32 | 380 | 223 | 592 | 1.38e-23 | 102 |
| MsG0880045957.01.T01 | AT3G46600 | 24.000 | 400 | 228 | 10 | 31 | 382 | 1 | 372 | 4.37e-23 | 99.8 |
| MsG0880045957.01.T01 | AT2G01570 | 25.714 | 385 | 218 | 13 | 35 | 380 | 225 | 580 | 1.08e-22 | 100 |
| MsG0880045957.01.T01 | AT3G46600 | 23.940 | 401 | 229 | 10 | 31 | 383 | 209 | 581 | 1.46e-22 | 99.8 |
| MsG0880045957.01.T01 | AT3G46600 | 23.940 | 401 | 229 | 10 | 31 | 383 | 177 | 549 | 1.63e-22 | 99.8 |
| MsG0880045957.01.T01 | AT3G03450 | 24.806 | 387 | 224 | 11 | 35 | 380 | 184 | 544 | 2.85e-22 | 99.0 |
| MsG0880045957.01.T01 | AT1G14920 | 24.675 | 385 | 222 | 13 | 35 | 380 | 173 | 528 | 1.69e-21 | 96.7 |
| MsG0880045957.01.T01 | AT2G29065 | 25.000 | 400 | 229 | 11 | 34 | 383 | 252 | 630 | 2.01e-21 | 96.7 |
| MsG0880045957.01.T01 | AT4G17230 | 25.570 | 395 | 228 | 10 | 31 | 382 | 155 | 526 | 2.27e-21 | 96.3 |
| MsG0880045957.01.T01 | AT4G17230 | 25.570 | 395 | 228 | 10 | 31 | 382 | 155 | 526 | 2.27e-21 | 96.3 |
| MsG0880045957.01.T01 | AT5G59450 | 22.637 | 402 | 237 | 10 | 31 | 383 | 224 | 600 | 1.15e-19 | 91.3 |
| MsG0880045957.01.T01 | AT3G13840 | 26.166 | 386 | 226 | 14 | 32 | 380 | 146 | 509 | 6.12e-18 | 85.9 |
| MsG0880045957.01.T01 | AT1G50420 | 27.391 | 230 | 137 | 6 | 34 | 260 | 57 | 259 | 6.98e-15 | 76.3 |
| MsG0880045957.01.T01 | AT5G41920 | 25.064 | 391 | 215 | 14 | 34 | 380 | 43 | 399 | 2.15e-13 | 71.6 |
| MsG0880045957.01.T01 | AT4G00150 | 22.680 | 388 | 248 | 13 | 18 | 380 | 193 | 553 | 7.86e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTTTGGTAGGCTTATC+TGG | 0.192122 | 8:+66930917 | None:intergenic |
| GATCTTTCTTATGAAGAATT+AGG | 0.219298 | 8:-66930350 | MsG0880045957.01.T01:CDS |
| TAACACCTTGGCATCGTTTC+GGG | 0.237807 | 8:-66930577 | MsG0880045957.01.T01:CDS |
| GTTCAACGTTTGGTTTATTC+AGG | 0.256041 | 8:-66930221 | MsG0880045957.01.T01:CDS |
| CTTTGTTCCCATTTGCCTAT+AGG | 0.258304 | 8:+66929811 | None:intergenic |
| CATATGAGTTTGAATTTGAT+AGG | 0.282770 | 8:+66930144 | None:intergenic |
| TACTTGATTGTTCTTGTTCA+TGG | 0.313905 | 8:+66930943 | None:intergenic |
| AGGTTAAAGCTTTGGATGTT+GGG | 0.345060 | 8:+66930891 | None:intergenic |
| TTAACACCTTGGCATCGTTT+CGG | 0.361682 | 8:-66930578 | MsG0880045957.01.T01:CDS |
| GTCACCAAAGGTTAAAGCTT+TGG | 0.376757 | 8:+66930883 | None:intergenic |
| TGAGAATCTGTGTGTATCTA+TGG | 0.382234 | 8:+66930628 | None:intergenic |
| ATGAGCATATTGTGCTTACT+TGG | 0.383561 | 8:-66929681 | MsG0880045957.01.T01:CDS |
| AGCTGCTAATGCAGCAATTC+TGG | 0.384262 | 8:-66930549 | MsG0880045957.01.T01:CDS |
| TCATAAGAAAGATCAAGTTT+AGG | 0.388296 | 8:+66930359 | None:intergenic |
| GGTTTATTCAGGTGAAGCTT+TGG | 0.398229 | 8:-66930210 | MsG0880045957.01.T01:CDS |
| TTGTTTCTTAACGCGCTTCG+AGG | 0.401307 | 8:-66930060 | MsG0880045957.01.T01:intron |
| ACATCCAAAGCTTTAACCTT+TGG | 0.403295 | 8:-66930887 | MsG0880045957.01.T01:CDS |
| GAATTTGATAGGGTTTCATC+TGG | 0.416336 | 8:+66930155 | None:intergenic |
| AAATGTTGAACTAATTAAAC+AGG | 0.426121 | 8:+66929622 | None:intergenic |
| GAGTTGAACCTATAGGCAAA+TGG | 0.454475 | 8:-66929819 | MsG0880045957.01.T01:CDS |
| AAGGTTAAAGCTTTGGATGT+TGG | 0.459071 | 8:+66930890 | None:intergenic |
| TGATGAACATGCTGCTGGAT+GGG | 0.466685 | 8:-66929719 | MsG0880045957.01.T01:CDS |
| GTTGGGAACCATGGTTTGGT+AGG | 0.471948 | 8:+66930908 | None:intergenic |
| GGATGTTGGGAACCATGGTT+TGG | 0.473234 | 8:+66930904 | None:intergenic |
| CATTGAGCTAGCTAACTTCG+TGG | 0.473787 | 8:-66930603 | MsG0880045957.01.T01:CDS |
| TGAAGAATTAGGTTCTAAGT+TGG | 0.481128 | 8:-66930339 | MsG0880045957.01.T01:CDS |
| GATGAACATGCTGCTGGATG+GGG | 0.481456 | 8:-66929718 | MsG0880045957.01.T01:CDS |
| CAAATCGTGCAGCGAAAACC+CGG | 0.484502 | 8:-66930704 | MsG0880045957.01.T01:CDS |
| GTTGAGAGAGTTGAACCTAT+AGG | 0.489058 | 8:-66929826 | MsG0880045957.01.T01:CDS |
| GCGATAGCATCGATTAATGT+AGG | 0.493202 | 8:+66930461 | None:intergenic |
| TTGAGCAAGTGTTACATCGT+TGG | 0.495134 | 8:+66930811 | None:intergenic |
| GTTTCTTCAAGTTACACAAA+TGG | 0.496382 | 8:-66930272 | MsG0880045957.01.T01:CDS |
| ACATTTGAGAGTTCAACGTT+TGG | 0.497075 | 8:-66930231 | MsG0880045957.01.T01:CDS |
| AGTTGAACCTATAGGCAAAT+GGG | 0.497812 | 8:-66929818 | MsG0880045957.01.T01:CDS |
| ATGCTTGATGAACATGCTGC+TGG | 0.503248 | 8:-66929724 | MsG0880045957.01.T01:CDS |
| CTAAGTTGGTGAATTTCGCT+AGG | 0.512357 | 8:-66930325 | MsG0880045957.01.T01:CDS |
| TTTCGCTGCACGATTTGTGA+GGG | 0.528958 | 8:+66930710 | None:intergenic |
| ATATGAGTTTGAATTTGATA+GGG | 0.529498 | 8:+66930145 | None:intergenic |
| CATATTGTGCTTACTTGGAA+AGG | 0.533221 | 8:-66929676 | MsG0880045957.01.T01:CDS |
| GCTTTGGATGTTGGGAACCA+TGG | 0.537432 | 8:+66930899 | None:intergenic |
| TTGATGAACATGCTGCTGGA+TGG | 0.537625 | 8:-66929720 | MsG0880045957.01.T01:CDS |
| TCAAGGGATTGGATTTGGTG+AGG | 0.546032 | 8:-66929770 | MsG0880045957.01.T01:CDS |
| TAAGAAAGATCAAGTTTAGG+TGG | 0.546147 | 8:+66930362 | None:intergenic |
| CATGCAGTTTGTGTCACCAA+AGG | 0.556290 | 8:+66930871 | None:intergenic |
| TGATCAAAGGAGCAACTTCG+TGG | 0.560682 | 8:+66930432 | None:intergenic |
| CACTTGCTCAACAAATCCTG+TGG | 0.571762 | 8:-66930799 | MsG0880045957.01.T01:CDS |
| AGTAGTAGCAGTAGTAGTAG+AGG | 0.575130 | 8:+66930106 | None:intergenic |
| TGATTTGAGTCACCATCTTG+TGG | 0.581981 | 8:+66930758 | None:intergenic |
| GGATTTGGTGAGGAATGTGT+TGG | 0.588738 | 8:-66929760 | MsG0880045957.01.T01:CDS |
| GCAATTCTGGAAGCAACAGA+AGG | 0.597475 | 8:-66930536 | MsG0880045957.01.T01:CDS |
| CTTTGGTGACACAAACTGCA+TGG | 0.598605 | 8:-66930870 | MsG0880045957.01.T01:CDS |
| TGGTGAGGAATGTGTTGGTG+AGG | 0.600886 | 8:-66929755 | MsG0880045957.01.T01:CDS |
| TAGGTCAAGAAACGTGACAT+TGG | 0.616837 | 8:-66930306 | MsG0880045957.01.T01:CDS |
| ACTTCGTGGATTTAACACCT+TGG | 0.617259 | 8:-66930589 | MsG0880045957.01.T01:CDS |
| GAAACAGTGAGTTTGATCAA+AGG | 0.618628 | 8:+66930419 | None:intergenic |
| AACAACATAGCACCACAAGA+TGG | 0.622233 | 8:-66930770 | MsG0880045957.01.T01:CDS |
| CTATGTTGTTGAGAACCCAC+AGG | 0.623394 | 8:+66930783 | None:intergenic |
| GCGTACCCGAAACGATGCCA+AGG | 0.644547 | 8:+66930572 | None:intergenic |
| ACTTGCTCAACAAATCCTGT+GGG | 0.656053 | 8:-66930798 | MsG0880045957.01.T01:CDS |
| GGTTTGGTAGGCTTATCTGG+TGG | 0.669809 | 8:+66930920 | None:intergenic |
| GAGAATGTGATAGCTCATGA+AGG | 0.690740 | 8:-66929859 | MsG0880045957.01.T01:CDS |
| CAGATAAGCCTACCAAACCA+TGG | 0.694388 | 8:-66930916 | MsG0880045957.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAGTTTGAATTTGATA+GGG | + | Chr8:66930435-66930454 | None:intergenic | 20.0% |
| !!! | CTACTAAAATAAAAAAGTGT+TGG | + | Chr8:66930549-66930568 | None:intergenic | 20.0% |
| ! | CATATGAGTTTGAATTTGAT+AGG | + | Chr8:66930436-66930455 | None:intergenic | 25.0% |
| ! | GATCTTTCTTATGAAGAATT+AGG | - | Chr8:66930227-66930246 | MsG0880045957.01.T01:CDS | 25.0% |
| ! | TCATAAGAAAGATCAAGTTT+AGG | + | Chr8:66930221-66930240 | None:intergenic | 25.0% |
| !! | ATGAGAAATGCTAATTTTCA+AGG | - | Chr8:66930790-66930809 | MsG0880045957.01.T01:CDS | 25.0% |
| !! | TGAGAAATGCTAATTTTCAA+GGG | - | Chr8:66930791-66930810 | MsG0880045957.01.T01:CDS | 25.0% |
| !! | TGATTTAACTTCAAACAACT+TGG | - | Chr8:66930579-66930598 | MsG0880045957.01.T01:CDS | 25.0% |
| GGTCTGCATTTAATTATCTA+TGG | - | Chr8:66930614-66930633 | MsG0880045957.01.T01:CDS | 30.0% | |
| TAAGAAAGATCAAGTTTAGG+TGG | + | Chr8:66930218-66930237 | None:intergenic | 30.0% | |
| ! | GTTTCTTCAAGTTACACAAA+TGG | - | Chr8:66930305-66930324 | MsG0880045957.01.T01:CDS | 30.0% |
| ! | TTGTTCTACTAGCATTTTAC+AGG | + | Chr8:66929901-66929920 | None:intergenic | 30.0% |
| !! | AATGCTAATTTTCAAGGGAT+TGG | - | Chr8:66930796-66930815 | MsG0880045957.01.T01:CDS | 30.0% |
| !! | AATTTTCAAGGGATTGGATT+TGG | - | Chr8:66930802-66930821 | MsG0880045957.01.T01:CDS | 30.0% |
| !! | TGAAGAATTAGGTTCTAAGT+TGG | - | Chr8:66930238-66930257 | MsG0880045957.01.T01:CDS | 30.0% |
| ACAACTTGGTCAGTAGATTA+AGG | - | Chr8:66930593-66930612 | MsG0880045957.01.T01:CDS | 35.0% | |
| ACATTTGAGAGTTCAACGTT+TGG | - | Chr8:66930346-66930365 | MsG0880045957.01.T01:CDS | 35.0% | |
| AGTTGAACCTATAGGCAAAT+GGG | - | Chr8:66930759-66930778 | MsG0880045957.01.T01:CDS | 35.0% | |
| ATGAGCATATTGTGCTTACT+TGG | - | Chr8:66930896-66930915 | MsG0880045957.01.T01:CDS | 35.0% | |
| CATATTGTGCTTACTTGGAA+AGG | - | Chr8:66930901-66930920 | MsG0880045957.01.T01:CDS | 35.0% | |
| CTATGGATACCTTATGATAC+TGG | - | Chr8:66930631-66930650 | MsG0880045957.01.T01:CDS | 35.0% | |
| GAAACAGTGAGTTTGATCAA+AGG | + | Chr8:66930161-66930180 | None:intergenic | 35.0% | |
| GAAATGTGTCCAGTATCATA+AGG | + | Chr8:66930643-66930662 | None:intergenic | 35.0% | |
| GAATTTGATAGGGTTTCATC+TGG | + | Chr8:66930425-66930444 | None:intergenic | 35.0% | |
| GGTATGAAGCAGATATTTGT+TGG | - | Chr8:66930689-66930708 | MsG0880045957.01.T01:CDS | 35.0% | |
| TGAGAATCTGTGTGTATCTA+TGG | + | Chr8:66929952-66929971 | None:intergenic | 35.0% | |
| ! | ACATCCAAAGCTTTAACCTT+TGG | - | Chr8:66929690-66929709 | MsG0880045957.01.T01:CDS | 35.0% |
| ! | GTTCAACGTTTGGTTTATTC+AGG | - | Chr8:66930356-66930375 | MsG0880045957.01.T01:CDS | 35.0% |
| ! | TACTAGCATTTTACAGGTAC+CGG | + | Chr8:66929895-66929914 | None:intergenic | 35.0% |
| !! | AAGGTTAAAGCTTTGGATGT+TGG | + | Chr8:66929690-66929709 | None:intergenic | 35.0% |
| !! | AGGTTAAAGCTTTGGATGTT+GGG | + | Chr8:66929689-66929708 | None:intergenic | 35.0% |
| !!! | ATGTTGTTTTTGCTTCTGCT+TGG | - | Chr8:66930929-66930948 | MsG0880045957.01.T01:CDS | 35.0% |
| AACAACATAGCACCACAAGA+TGG | - | Chr8:66929807-66929826 | MsG0880045957.01.T01:CDS | 40.0% | |
| ACTTCGTGGATTTAACACCT+TGG | - | Chr8:66929988-66930007 | MsG0880045957.01.T01:intron | 40.0% | |
| ACTTGCTCAACAAATCCTGT+GGG | - | Chr8:66929779-66929798 | MsG0880045957.01.T01:CDS | 40.0% | |
| AGTAGTAGCAGTAGTAGTAG+AGG | + | Chr8:66930474-66930493 | None:intergenic | 40.0% | |
| CTTTGTTCCCATTTGCCTAT+AGG | + | Chr8:66930769-66930788 | None:intergenic | 40.0% | |
| GAGAATGTGATAGCTCATGA+AGG | - | Chr8:66930718-66930737 | MsG0880045957.01.T01:CDS | 40.0% | |
| GAGTTGAACCTATAGGCAAA+TGG | - | Chr8:66930758-66930777 | MsG0880045957.01.T01:CDS | 40.0% | |
| GGTTTATTCAGGTGAAGCTT+TGG | - | Chr8:66930367-66930386 | MsG0880045957.01.T01:CDS | 40.0% | |
| GTCACCAAAGGTTAAAGCTT+TGG | + | Chr8:66929697-66929716 | None:intergenic | 40.0% | |
| GTTGAGAGAGTTGAACCTAT+AGG | - | Chr8:66930751-66930770 | MsG0880045957.01.T01:CDS | 40.0% | |
| TAGGTCAAGAAACGTGACAT+TGG | - | Chr8:66930271-66930290 | MsG0880045957.01.T01:CDS | 40.0% | |
| TGATTTGAGTCACCATCTTG+TGG | + | Chr8:66929822-66929841 | None:intergenic | 40.0% | |
| TTAACACCTTGGCATCGTTT+CGG | - | Chr8:66929999-66930018 | MsG0880045957.01.T01:intron | 40.0% | |
| TTGAGCAAGTGTTACATCGT+TGG | + | Chr8:66929769-66929788 | None:intergenic | 40.0% | |
| ! | ACTAGCATTTTACAGGTACC+GGG | + | Chr8:66929894-66929913 | None:intergenic | 40.0% |
| !! | CTAAGTTGGTGAATTTCGCT+AGG | - | Chr8:66930252-66930271 | MsG0880045957.01.T01:CDS | 40.0% |
| !! | GCGATAGCATCGATTAATGT+AGG | + | Chr8:66930119-66930138 | None:intergenic | 40.0% |
| AGCTGCTAATGCAGCAATTC+TGG | - | Chr8:66930028-66930047 | MsG0880045957.01.T01:intron | 45.0% | |
| ATGCTTGATGAACATGCTGC+TGG | - | Chr8:66930853-66930872 | MsG0880045957.01.T01:CDS | 45.0% | |
| CACTTGCTCAACAAATCCTG+TGG | - | Chr8:66929778-66929797 | MsG0880045957.01.T01:CDS | 45.0% | |
| CAGATAAGCCTACCAAACCA+TGG | - | Chr8:66929661-66929680 | MsG0880045957.01.T01:CDS | 45.0% | |
| CATGCAGTTTGTGTCACCAA+AGG | + | Chr8:66929709-66929728 | None:intergenic | 45.0% | |
| CATTGAGCTAGCTAACTTCG+TGG | - | Chr8:66929974-66929993 | MsG0880045957.01.T01:intron | 45.0% | |
| CGTGGAAGTAACAAAGGCAA+TGG | - | Chr8:66930668-66930687 | MsG0880045957.01.T01:CDS | 45.0% | |
| CTATGTTGTTGAGAACCCAC+AGG | + | Chr8:66929797-66929816 | None:intergenic | 45.0% | |
| TAACACCTTGGCATCGTTTC+GGG | - | Chr8:66930000-66930019 | MsG0880045957.01.T01:intron | 45.0% | |
| TGATCAAAGGAGCAACTTCG+TGG | + | Chr8:66930148-66930167 | None:intergenic | 45.0% | |
| TGATGAACATGCTGCTGGAT+GGG | - | Chr8:66930858-66930877 | MsG0880045957.01.T01:CDS | 45.0% | |
| TTGATGAACATGCTGCTGGA+TGG | - | Chr8:66930857-66930876 | MsG0880045957.01.T01:CDS | 45.0% | |
| TTTCGCTGCACGATTTGTGA+GGG | + | Chr8:66929870-66929889 | None:intergenic | 45.0% | |
| ! | CTTTGGTGACACAAACTGCA+TGG | - | Chr8:66929707-66929726 | MsG0880045957.01.T01:CDS | 45.0% |
| ! | GCAATTCTGGAAGCAACAGA+AGG | - | Chr8:66930041-66930060 | MsG0880045957.01.T01:intron | 45.0% |
| ! | TTGCCTTTGTTACTTCCACG+TGG | + | Chr8:66930668-66930687 | None:intergenic | 45.0% |
| ! | TTGTTTCTTAACGCGCTTCG+AGG | - | Chr8:66930517-66930536 | MsG0880045957.01.T01:CDS | 45.0% |
| ! | TTTTCGCTGCACGATTTGTG+AGG | + | Chr8:66929871-66929890 | None:intergenic | 45.0% |
| !! | CATGGTTTGGTAGGCTTATC+TGG | + | Chr8:66929663-66929682 | None:intergenic | 45.0% |
| !! | GGATTTGGTGAGGAATGTGT+TGG | - | Chr8:66930817-66930836 | MsG0880045957.01.T01:CDS | 45.0% |
| !! | TCAAGGGATTGGATTTGGTG+AGG | - | Chr8:66930807-66930826 | MsG0880045957.01.T01:CDS | 45.0% |
| CAAATCGTGCAGCGAAAACC+CGG | - | Chr8:66929873-66929892 | MsG0880045957.01.T01:intron | 50.0% | |
| CTGCCACGTGGAAGTAACAA+AGG | - | Chr8:66930662-66930681 | MsG0880045957.01.T01:CDS | 50.0% | |
| GATGAACATGCTGCTGGATG+GGG | - | Chr8:66930859-66930878 | MsG0880045957.01.T01:CDS | 50.0% | |
| GGATGTTGGGAACCATGGTT+TGG | + | Chr8:66929676-66929695 | None:intergenic | 50.0% | |
| ! | GCTTTGGATGTTGGGAACCA+TGG | + | Chr8:66929681-66929700 | None:intergenic | 50.0% |
| ! | GGTTTGGTAGGCTTATCTGG+TGG | + | Chr8:66929660-66929679 | None:intergenic | 50.0% |
| ! | TGGTGAGGAATGTGTTGGTG+AGG | - | Chr8:66930822-66930841 | MsG0880045957.01.T01:CDS | 50.0% |
| !! | GTTGGGAACCATGGTTTGGT+AGG | + | Chr8:66929672-66929691 | None:intergenic | 50.0% |
| CTGGACACATTTCTGCCACG+TGG | - | Chr8:66930650-66930669 | MsG0880045957.01.T01:CDS | 55.0% | |
| GCGTACCCGAAACGATGCCA+AGG | + | Chr8:66930008-66930027 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 66929636 | 66930963 | 66929636 | ID=MsG0880045957.01;Name=MsG0880045957.01 |
| Chr8 | mRNA | 66929636 | 66930963 | 66929636 | ID=MsG0880045957.01.T01;Parent=MsG0880045957.01;Name=MsG0880045957.01.T01;_AED=0.14;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|383 |
| Chr8 | exon | 66930061 | 66930963 | 66930061 | ID=MsG0880045957.01.T01:exon:25373;Parent=MsG0880045957.01.T01 |
| Chr8 | exon | 66929636 | 66929884 | 66929636 | ID=MsG0880045957.01.T01:exon:25372;Parent=MsG0880045957.01.T01 |
| Chr8 | CDS | 66930061 | 66930963 | 66930061 | ID=MsG0880045957.01.T01:cds;Parent=MsG0880045957.01.T01 |
| Chr8 | CDS | 66929636 | 66929884 | 66929636 | ID=MsG0880045957.01.T01:cds;Parent=MsG0880045957.01.T01 |
| Gene Sequence |
| Protein sequence |
