AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046228.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046228.01.T01 MTR_4g103580 70.157 191 0 3 1 191 1 134 1.70e-76 226
MsG0880046228.01.T01 MTR_4g103580 63.694 157 0 3 35 191 35 134 2.53e-55 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046228.01.T01 AT5G63460 38.889 180 78 5 12 191 16 163 5.17e-32 114
MsG0880046228.01.T01 AT5G63460 38.333 180 67 4 12 191 16 151 2.20e-31 112
MsG0880046228.01.T01 AT5G63460 37.778 180 67 4 12 191 16 150 1.44e-30 110
MsG0880046228.01.T01 AT5G63460 57.895 38 16 0 12 49 16 53 5.66e-11 57.4

Find 60 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGATTATTTAGTTTCT+TGG 0.192097 8:-70806785 None:intergenic
GTCTTAATATGTTGCCCTTC+TGG 0.199055 8:-70806485 None:intergenic
CAGAACTGCTGAAAAGGTTT+TGG 0.203581 8:+70806753 MsG0880046228.01.T01:intron
CTCTCAAGTCTCTTTATATA+TGG 0.252600 8:-70804987 None:intergenic
TTTCTCATCCTGTCTTACTA+TGG 0.297946 8:+70807403 MsG0880046228.01.T01:CDS
GTTGCCCTTCTGGATAAATA+AGG 0.312670 8:-70806475 None:intergenic
GTTTCAACTGTTGGTTTGGT+TGG 0.343743 8:-70805070 None:intergenic
ACTACTTGCCTTCTTTCCTT+TGG 0.349417 8:-70807531 None:intergenic
CAAATATATGTTAAAATTGT+AGG 0.366387 8:-70807554 None:intergenic
AGTACAGTACAGTCGTCTTC+TGG 0.368720 8:+70805016 MsG0880046228.01.T01:five_prime_UTR
TTTCAACTGTTGGTTTGGTT+GGG 0.376597 8:-70805069 None:intergenic
CTCGCTAATCTTCCCCTTCG+CGG 0.386112 8:+70805153 MsG0880046228.01.T01:CDS
ACGTCGTCTTCTTCTTCTCC+TGG 0.402884 8:+70805117 MsG0880046228.01.T01:CDS
CACCGCCATTTCTTCCAATC+CGG 0.419057 8:+70805188 MsG0880046228.01.T01:CDS
CTTGCCTTCTTTCCTTTGGT+TGG 0.421665 8:-70807527 None:intergenic
AGAGGTTTCAACTGTTGGTT+TGG 0.422740 8:-70805074 None:intergenic
GAGCACCAAAGCTACTATAT+AGG 0.443936 8:-70805806 None:intergenic
AAACCTCTTCTCTCCGGCGA+TGG 0.449363 8:+70805089 MsG0880046228.01.T01:exon
TTGCCCTTCTGGATAAATAA+GGG 0.466499 8:-70806474 None:intergenic
AAACATGCAGAGGGATCAAA+TGG 0.468650 8:+70807431 MsG0880046228.01.T01:CDS
GCCTCTCTACAGTCAAGCTC+TGG 0.474688 8:-70807475 None:intergenic
ATGTACCGGATTGGAAGAAA+TGG 0.479081 8:-70805193 None:intergenic
TGGTTTGGTTGGGTTCAGTT+CGG 0.479495 8:-70805059 None:intergenic
AGAGAAGAGGTTTCAACTGT+TGG 0.481330 8:-70805079 None:intergenic
CTTCCACAAAAGGTGGGGTG+TGG 0.481838 8:-70806583 None:intergenic
ACACTTGACTCTTCCACAAA+AGG 0.490413 8:-70806593 None:intergenic
CAAGCTCTGGAAGTTCCTAC+TGG 0.499029 8:-70807462 None:intergenic
TTTATTCTATAGTATTATCT+CGG 0.511728 8:+70807378 MsG0880046228.01.T01:intron
ATCTGAACACACCTTGTTGA+GGG 0.513916 8:-70806810 None:intergenic
TCTTCCAACCAAAGGAAAGA+AGG 0.533309 8:+70807523 MsG0880046228.01.T01:CDS
GACTCCCTTATTTATCCAGA+AGG 0.540091 8:+70806470 MsG0880046228.01.T01:CDS
GGAAGTGAAGGTGCCGCGAA+GGG 0.542292 8:-70805166 None:intergenic
TGGAAGTGAAGGTGCCGCGA+AGG 0.550157 8:-70805167 None:intergenic
GCGAGAAATTGAGAAGCGCC+AGG 0.550760 8:-70805135 None:intergenic
TTGACTCTTCCACAAAAGGT+GGG 0.555942 8:-70806589 None:intergenic
CTTGACTCTTCCACAAAAGG+TGG 0.559921 8:-70806590 None:intergenic
AATCCATCGCCGGAGAGAAG+AGG 0.561436 8:-70805092 None:intergenic
ACTCCCTTATTTATCCAGAA+GGG 0.562333 8:+70806471 MsG0880046228.01.T01:CDS
TTCCACAAAAGGTGGGGTGT+GGG 0.567302 8:-70806582 None:intergenic
CAGTTGAAACCTCTTCTCTC+CGG 0.569104 8:+70805083 MsG0880046228.01.T01:five_prime_UTR
GATCATGAGACCACACCGCC+AGG 0.571255 8:+70805731 MsG0880046228.01.T01:CDS
CATCTGAACACACCTTGTTG+AGG 0.571746 8:-70806811 None:intergenic
GAACACACCTTGTTGAGGGG+TGG 0.587775 8:-70806806 None:intergenic
CTTTAGCTCTCAAAAGAGCT+CGG 0.588002 8:-70807499 None:intergenic
GAAGTGAAGGTGCCGCGAAG+GGG 0.588447 8:-70805165 None:intergenic
CGGATTGGAAGAAATGGCGG+TGG 0.591976 8:-70805187 None:intergenic
CATATATAAAGAGACTTGAG+AGG 0.595674 8:+70804988 None:intergenic
CAAATGGTCAAACATCCAGT+AGG 0.616608 8:+70807447 MsG0880046228.01.T01:CDS
GACGACGTCGAATCCATCGC+CGG 0.624552 8:-70805102 None:intergenic
ATAAATAAGACCTGGCGGTG+TGG 0.624746 8:-70805741 None:intergenic
TGACTCTTCCACAAAAGGTG+GGG 0.630108 8:-70806588 None:intergenic
GCTAAAGGTCTTCCAACCAA+AGG 0.631332 8:+70807515 MsG0880046228.01.T01:CDS
AGAAATGGCGGTGGAAGTGA+AGG 0.648471 8:-70805178 None:intergenic
TCCAGAGCTTGACTGTAGAG+AGG 0.652027 8:+70807474 MsG0880046228.01.T01:CDS
TACCGGATTGGAAGAAATGG+CGG 0.653961 8:-70805190 None:intergenic
AATCAAACCACCCCTCAACA+AGG 0.654345 8:+70806799 MsG0880046228.01.T01:CDS
ATATATAAAGAGACTTGAGA+GGG 0.654730 8:+70804989 MsG0880046228.01.T01:five_prime_UTR
GAAAGATAATAAATAAGACC+TGG 0.663107 8:-70805749 None:intergenic
TCTGAACACACCTTGTTGAG+GGG 0.664812 8:-70806809 None:intergenic
AGATAATAAATAAGACCTGG+CGG 0.701764 8:-70805746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTTATTAAATTTAAC+AGG + Chr8:70807150-70807169 MsG0880046228.01.T01:intron 10.0%
!!! TTTTCTTATTAAATTTAACA+GGG + Chr8:70807151-70807170 MsG0880046228.01.T01:intron 10.0%
!! AAAAGATAAAAAATCATGTT+TGG + Chr8:70807078-70807097 MsG0880046228.01.T01:intron 15.0%
!! CAAATATATGTTAAAATTGT+AGG - Chr8:70807557-70807576 None:intergenic 15.0%
!! TTTATTCTATAGTATTATCT+CGG + Chr8:70807378-70807397 MsG0880046228.01.T01:intron 15.0%
!!! TGAAGTAAAGTAATAAATTT+TGG - Chr8:70805396-70805415 None:intergenic 15.0%
!!! TTGAAAGATTCATTTTTAAA+TGG + Chr8:70806270-70806289 MsG0880046228.01.T01:intron 15.0%
!! AAAATTAATAAAACTAGACC+AGG - Chr8:70806722-70806741 None:intergenic 20.0%
!! AAAATTTATACCAAAAACAG+AGG - Chr8:70807135-70807154 None:intergenic 20.0%
!! AACAGTAAATTCAATAGAAA+TGG - Chr8:70805254-70805273 None:intergenic 20.0%
!! AACTTTCTACAATGATAAAA+CGG - Chr8:70805890-70805909 None:intergenic 20.0%
!! ATATTAACATGATTTGAATC+TGG - Chr8:70805980-70805999 None:intergenic 20.0%
!! ATTAATAACAGTGAAATGAA+AGG - Chr8:70805297-70805316 None:intergenic 20.0%
!! TACTTATAGCAAGAATTTAT+GGG - Chr8:70806427-70806446 None:intergenic 20.0%
!! TCATATAAATCAATCAAACA+TGG - Chr8:70807180-70807199 None:intergenic 20.0%
!! TTAATAACAGTGAAATGAAA+GGG - Chr8:70805296-70805315 None:intergenic 20.0%
!! TTATTACTTTACTTCAAAGA+GGG + Chr8:70805400-70805419 MsG0880046228.01.T01:intron 20.0%
!! TTTATTACTTTACTTCAAAG+AGG + Chr8:70805399-70805418 MsG0880046228.01.T01:intron 20.0%
!!! TTATGTCTATATTTTTATCC+TGG + Chr8:70806701-70806720 MsG0880046228.01.T01:intron 20.0%
!!! TTTTTAATGCAAAGTAGTTA+TGG + Chr8:70806662-70806681 MsG0880046228.01.T01:intron 20.0%
! AAAAAATGAGATTGAAAGAG+AGG - Chr8:70805223-70805242 None:intergenic 25.0%
! AAAAATGAGATTGAAAGAGA+GGG - Chr8:70805222-70805241 None:intergenic 25.0%
! AAGTGTATGGTATAATTGTT+GGG + Chr8:70806610-70806629 MsG0880046228.01.T01:intron 25.0%
! ATATATAAAGAGACTTGAGA+GGG + Chr8:70804989-70805008 MsG0880046228.01.T01:five_prime_UTR 25.0%
! CAAGGAAATAATTTACACAT+TGG + Chr8:70806050-70806069 MsG0880046228.01.T01:intron 25.0%
! CTACTTATAGCAAGAATTTA+TGG - Chr8:70806428-70806447 None:intergenic 25.0%
! GAAAGATAATAAATAAGACC+TGG - Chr8:70805752-70805771 None:intergenic 25.0%
! GTTCAGAAAAATATATGTCA+TGG - Chr8:70806393-70806412 None:intergenic 25.0%
! TAATAACAGTGAAATGAAAG+GGG - Chr8:70805295-70805314 None:intergenic 25.0%
! TTTAAAAACCATAGTAAGAC+AGG - Chr8:70807414-70807433 None:intergenic 25.0%
!! GGTTTGATTATTTAGTTTCT+TGG - Chr8:70806788-70806807 None:intergenic 25.0%
!! TTTGTGTTTTGTAGAAATTG+TGG + Chr8:70806318-70806337 MsG0880046228.01.T01:intron 25.0%
!! TTTTGTAGAAATTGTGGAAT+TGG + Chr8:70806324-70806343 MsG0880046228.01.T01:intron 25.0%
!!! CTTGTAAACATTGTTTCTTT+TGG + Chr8:70805547-70805566 MsG0880046228.01.T01:intron 25.0%
!!! TAGAAGAATGGTTTTATTTC+CGG + Chr8:70805940-70805959 MsG0880046228.01.T01:intron 25.0%
!!! TATAACCTCATAAAAGCATT+AGG - Chr8:70805646-70805665 None:intergenic 25.0%
AAAATGAGATTGAAAGAGAG+GGG - Chr8:70805221-70805240 None:intergenic 30.0%
AGACTAAAGTCTCAAAGAAT+CGG - Chr8:70807303-70807322 None:intergenic 30.0%
AGATAATAAATAAGACCTGG+CGG - Chr8:70805749-70805768 None:intergenic 30.0%
AGTGACAAGAATGATACTTT+AGG - Chr8:70805915-70805934 None:intergenic 30.0%
CAAGTGTATGGTATAATTGT+TGG + Chr8:70806609-70806628 MsG0880046228.01.T01:intron 30.0%
CTTGAAAAAATTGCAGTCAA+TGG - Chr8:70806034-70806053 None:intergenic 30.0%
TAAAGCCTATATAGTAGCTT+TGG + Chr8:70805801-70805820 MsG0880046228.01.T01:intron 30.0%
TAAGTTAGATACAAGCTCAT+TGG - Chr8:70807273-70807292 None:intergenic 30.0%
TATCTGACAGTTCAAAAAAG+AGG + Chr8:70806552-70806571 MsG0880046228.01.T01:CDS 30.0%
TCTGGTCAAATATATTGTTC+CGG - Chr8:70805962-70805981 None:intergenic 30.0%
TTTATGATGCATTAGCCATT+AGG + Chr8:70806837-70806856 MsG0880046228.01.T01:intron 30.0%
! ATGGTTTTTAAACATGCAGA+GGG + Chr8:70807422-70807441 MsG0880046228.01.T01:CDS 30.0%
! ATTCTATCTTCTGATTTTGC+AGG + Chr8:70805685-70805704 MsG0880046228.01.T01:intron 30.0%
! TATGGTTTTTAAACATGCAG+AGG + Chr8:70807421-70807440 MsG0880046228.01.T01:CDS 30.0%
! TTAAACATCAAAGCATCAAG+AGG - Chr8:70806976-70806995 None:intergenic 30.0%
!! AACGTTTCACACTATTTTAG+TGG + Chr8:70806120-70806139 MsG0880046228.01.T01:intron 30.0%
!!! ATTGTTTCTTTTGGAACGAA+TGG + Chr8:70805556-70805575 MsG0880046228.01.T01:intron 30.0%
!!! CATTGACTGCAATTTTTTCA+AGG + Chr8:70806032-70806051 MsG0880046228.01.T01:intron 30.0%
!!! CTATTTTAGTGGTCTTAATC+TGG + Chr8:70806131-70806150 MsG0880046228.01.T01:intron 30.0%
AAATGAGATTGAAAGAGAGG+GGG - Chr8:70805220-70805239 None:intergenic 35.0%
AATCCACACTCGAGAAAAAA+AGG - Chr8:70807058-70807077 None:intergenic 35.0%
AATGAATCTTTCAACCCTTC+AGG - Chr8:70806264-70806283 None:intergenic 35.0%
AGCTTGTATCTAACTTAGCT+AGG + Chr8:70807276-70807295 MsG0880046228.01.T01:intron 35.0%
CATTACCAGGATAGATCAAT+CGG - Chr8:70805483-70805502 None:intergenic 35.0%
GCTAGACGCATTTAAGAATT+AGG - Chr8:70806935-70806954 None:intergenic 35.0%
GCTTGTATCTAACTTAGCTA+GGG + Chr8:70807277-70807296 MsG0880046228.01.T01:intron 35.0%
TGTCACTAGAGTTAGAAGAA+TGG + Chr8:70805928-70805947 MsG0880046228.01.T01:intron 35.0%
TTGCCCTTCTGGATAAATAA+GGG - Chr8:70806477-70806496 None:intergenic 35.0%
TTTCACTATTTCGTACTGCT+TGG + Chr8:70806635-70806654 MsG0880046228.01.T01:intron 35.0%
TTTCTCATCCTGTCTTACTA+TGG + Chr8:70807403-70807422 MsG0880046228.01.T01:CDS 35.0%
! ACTCCCTTATTTATCCAGAA+GGG + Chr8:70806471-70806490 MsG0880046228.01.T01:CDS 35.0%
! AGAACTGCTGAAAAGGTTTT+GGG + Chr8:70806754-70806773 MsG0880046228.01.T01:intron 35.0%
! AGTAGCCTAATGCTTTTATG+AGG + Chr8:70805638-70805657 MsG0880046228.01.T01:intron 35.0%
! ATCTTCTGATTTTGCAGGAT+CGG + Chr8:70805690-70805709 MsG0880046228.01.T01:intron 35.0%
! GGACATTAAGAACCTTTTCA+AGG + Chr8:70807247-70807266 MsG0880046228.01.T01:intron 35.0%
! TTTTGTCAGAACTGCTGAAA+AGG + Chr8:70806747-70806766 MsG0880046228.01.T01:intron 35.0%
!! TCTTAATCTGGATTAGTGCA+GGG + Chr8:70806143-70806162 MsG0880046228.01.T01:intron 35.0%
!! TTTCAACTGTTGGTTTGGTT+GGG - Chr8:70805072-70805091 None:intergenic 35.0%
!!! AGTTCATACCTCTTTTTTGC+TGG + Chr8:70806864-70806883 MsG0880046228.01.T01:intron 35.0%
!!! GTTCATACCTCTTTTTTGCT+GGG + Chr8:70806865-70806884 MsG0880046228.01.T01:intron 35.0%
!!! TTCATACCTCTTTTTTGCTG+GGG + Chr8:70806866-70806885 MsG0880046228.01.T01:intron 35.0%
AAACATGCAGAGGGATCAAA+TGG + Chr8:70807431-70807450 MsG0880046228.01.T01:CDS 40.0%
ACACTTGACTCTTCCACAAA+AGG - Chr8:70806596-70806615 None:intergenic 40.0%
ACATTAGCAACTAGCAAGCT+AGG - Chr8:70805342-70805361 None:intergenic 40.0%
ACTACTTGCCTTCTTTCCTT+TGG - Chr8:70807534-70807553 None:intergenic 40.0%
AGAGAAGAGGTTTCAACTGT+TGG - Chr8:70805082-70805101 None:intergenic 40.0%
AGCCATCTTACTACAGATCT+AGG - Chr8:70807341-70807360 None:intergenic 40.0%
AGGTATGAACTCGATCCTAA+TGG - Chr8:70806855-70806874 None:intergenic 40.0%
ATCTGAACACACCTTGTTGA+GGG - Chr8:70806813-70806832 None:intergenic 40.0%
ATGTCCAACGCAACTGTTAT+TGG - Chr8:70807233-70807252 None:intergenic 40.0%
CAAATGGTCAAACATCCAGT+AGG + Chr8:70807447-70807466 MsG0880046228.01.T01:CDS 40.0%
CAATTGTGTATGCCATTACC+AGG - Chr8:70805496-70805515 None:intergenic 40.0%
CACACTCGAGAAAAAAAGGT+TGG - Chr8:70807054-70807073 None:intergenic 40.0%
CATTAGCAACTAGCAAGCTA+GGG - Chr8:70805341-70805360 None:intergenic 40.0%
CGATTGATCTATCCTGGTAA+TGG + Chr8:70805481-70805500 MsG0880046228.01.T01:intron 40.0%
GAGCACCAAAGCTACTATAT+AGG - Chr8:70805809-70805828 None:intergenic 40.0%
GCCATCTTACTACAGATCTA+GGG - Chr8:70807340-70807359 None:intergenic 40.0%
GTCTTAATATGTTGCCCTTC+TGG - Chr8:70806488-70806507 None:intergenic 40.0%
GTTGCCCTTCTGGATAAATA+AGG - Chr8:70806478-70806497 None:intergenic 40.0%
TAGATCTGTAGTAAGATGGC+TGG + Chr8:70807340-70807359 MsG0880046228.01.T01:intron 40.0%
TCATGGCATTATGACCAAGT+GGG - Chr8:70806376-70806395 None:intergenic 40.0%
TCCCTAGATCTGTAGTAAGA+TGG + Chr8:70807336-70807355 MsG0880046228.01.T01:intron 40.0%
TCTTCCAACCAAAGGAAAGA+AGG + Chr8:70807523-70807542 MsG0880046228.01.T01:CDS 40.0%
TGAACCAATAACAGTTGCGT+TGG + Chr8:70807226-70807245 MsG0880046228.01.T01:intron 40.0%
TTGACTCTTCCACAAAAGGT+GGG - Chr8:70806592-70806611 None:intergenic 40.0%
TTGTGGAAGAGTCAAGTGTA+TGG + Chr8:70806597-70806616 MsG0880046228.01.T01:intron 40.0%
! AGAGGTTTCAACTGTTGGTT+TGG - Chr8:70805077-70805096 None:intergenic 40.0%
! ATCTTTCAACCCTTCAGGTT+AGG - Chr8:70806259-70806278 None:intergenic 40.0%
! ATGTACCGGATTGGAAGAAA+TGG - Chr8:70805196-70805215 None:intergenic 40.0%
! CAGAACTGCTGAAAAGGTTT+TGG + Chr8:70806753-70806772 MsG0880046228.01.T01:intron 40.0%
! GACTCCCTTATTTATCCAGA+AGG + Chr8:70806470-70806489 MsG0880046228.01.T01:CDS 40.0%
! TCTCAAGATGCCTCTGTTTT+TGG + Chr8:70807122-70807141 MsG0880046228.01.T01:intron 40.0%
! TCTTTCAACCCTTCAGGTTA+GGG - Chr8:70806258-70806277 None:intergenic 40.0%
!! CTTTAGCTCTCAAAAGAGCT+CGG - Chr8:70807502-70807521 None:intergenic 40.0%
!! GTCTTAATCTGGATTAGTGC+AGG + Chr8:70806142-70806161 MsG0880046228.01.T01:intron 40.0%
!! GTTTCAACTGTTGGTTTGGT+TGG - Chr8:70805073-70805092 None:intergenic 40.0%
!!! CAACCTTTTTTTCTCGAGTG+TGG + Chr8:70807052-70807071 MsG0880046228.01.T01:intron 40.0%
AATCAAACCACCCCTCAACA+AGG + Chr8:70806799-70806818 MsG0880046228.01.T01:CDS 45.0%
AGTACAGTACAGTCGTCTTC+TGG + Chr8:70805016-70805035 MsG0880046228.01.T01:five_prime_UTR 45.0%
ATAAATAAGACCTGGCGGTG+TGG - Chr8:70805744-70805763 None:intergenic 45.0%
ATTATGACCAAGTGGGTGGA+AGG - Chr8:70806369-70806388 None:intergenic 45.0%
CAGTTGAAACCTCTTCTCTC+CGG + Chr8:70805083-70805102 MsG0880046228.01.T01:five_prime_UTR 45.0%
CATCTGAACACACCTTGTTG+AGG - Chr8:70806814-70806833 None:intergenic 45.0%
CTTGACTCTTCCACAAAAGG+TGG - Chr8:70806593-70806612 None:intergenic 45.0%
CTTGCCTTCTTTCCTTTGGT+TGG - Chr8:70807530-70807549 None:intergenic 45.0%
GCTAAAGGTCTTCCAACCAA+AGG + Chr8:70807515-70807534 MsG0880046228.01.T01:CDS 45.0%
GTCATGGCATTATGACCAAG+TGG - Chr8:70806377-70806396 None:intergenic 45.0%
GTCTAGCATCACTTGTCTCA+TGG + Chr8:70806948-70806967 MsG0880046228.01.T01:intron 45.0%
TACCAGGATAGATCAATCGG+CGG - Chr8:70805480-70805499 None:intergenic 45.0%
TCTGAACACACCTTGTTGAG+GGG - Chr8:70806812-70806831 None:intergenic 45.0%
TCTTGTCCCCAGCAAAAAAG+AGG - Chr8:70806875-70806894 None:intergenic 45.0%
TGACTCTTCCACAAAAGGTG+GGG - Chr8:70806591-70806610 None:intergenic 45.0%
! CTTTCAACCCTTCAGGTTAG+GGG - Chr8:70806257-70806276 None:intergenic 45.0%
! TACCGGATTGGAAGAAATGG+CGG - Chr8:70805193-70805212 None:intergenic 45.0%
! TGATTTTGCAGGATCGGATG+CGG + Chr8:70805696-70805715 MsG0880046228.01.T01:intron 45.0%
!! CAAGCTCATTGGCCTTGAAA+AGG - Chr8:70807262-70807281 None:intergenic 45.0%
!! CGAGCTCTTTTGAGAGCTAA+AGG + Chr8:70807500-70807519 MsG0880046228.01.T01:CDS 45.0%
!! TGGTTTGGTTGGGTTCAGTT+CGG - Chr8:70805062-70805081 None:intergenic 45.0%
ACGTCGTCTTCTTCTTCTCC+TGG + Chr8:70805117-70805136 MsG0880046228.01.T01:CDS 50.0%
AGAAATGGCGGTGGAAGTGA+AGG - Chr8:70805181-70805200 None:intergenic 50.0%
CACCGCCATTTCTTCCAATC+CGG + Chr8:70805188-70805207 MsG0880046228.01.T01:CDS 50.0%
CTTAGCTCCCCTAACCTGAA+GGG + Chr8:70806247-70806266 MsG0880046228.01.T01:intron 50.0%
GAAAGAGAGGGGGAATGTAC+CGG - Chr8:70805210-70805229 None:intergenic 50.0%
GGCATCTTGAGAACGCAATC+TGG - Chr8:70807114-70807133 None:intergenic 50.0%
TCCAGAGCTTGACTGTAGAG+AGG + Chr8:70807474-70807493 MsG0880046228.01.T01:CDS 50.0%
TGGCATTATGACCAAGTGGG+TGG - Chr8:70806373-70806392 None:intergenic 50.0%
TTCCACAAAAGGTGGGGTGT+GGG - Chr8:70806585-70806604 None:intergenic 50.0%
! GATTTTGCAGGATCGGATGC+GGG + Chr8:70805697-70805716 MsG0880046228.01.T01:intron 50.0%
! TTCCGCCGATTGATCTATCC+TGG + Chr8:70805475-70805494 MsG0880046228.01.T01:intron 50.0%
!! CAAGCTCTGGAAGTTCCTAC+TGG - Chr8:70807465-70807484 None:intergenic 50.0%
AAACCTCTTCTCTCCGGCGA+TGG + Chr8:70805089-70805108 MsG0880046228.01.T01:exon 55.0%
AAAGTCGCTGCTTGGGGGTT+GGG - Chr8:70805841-70805860 None:intergenic 55.0%
AACCCCCAAGCAGCGACTTT+GGG + Chr8:70805841-70805860 MsG0880046228.01.T01:intron 55.0%
AATCCATCGCCGGAGAGAAG+AGG - Chr8:70805095-70805114 None:intergenic 55.0%
AGAGGGGGAATGTACCGGAT+TGG - Chr8:70805205-70805224 None:intergenic 55.0%
CCTTAGCTCCCCTAACCTGA+AGG + Chr8:70806246-70806265 MsG0880046228.01.T01:intron 55.0%
CTCGCTAATCTTCCCCTTCG+CGG + Chr8:70805153-70805172 MsG0880046228.01.T01:CDS 55.0%
CTTCCACAAAAGGTGGGGTG+TGG - Chr8:70806586-70806605 None:intergenic 55.0%
CTTCCCCAAAGTCGCTGCTT+GGG - Chr8:70805848-70805867 None:intergenic 55.0%
GAACACACCTTGTTGAGGGG+TGG - Chr8:70806809-70806828 None:intergenic 55.0%
GCAAACTCCTTCCACCCACT+TGG + Chr8:70806359-70806378 MsG0880046228.01.T01:intron 55.0%
GCCTCTCTACAGTCAAGCTC+TGG - Chr8:70807478-70807497 None:intergenic 55.0%
TCTTCCCCAAAGTCGCTGCT+TGG - Chr8:70805849-70805868 None:intergenic 55.0%
TTCCCCAAAGTCGCTGCTTG+GGG - Chr8:70805847-70805866 None:intergenic 55.0%
! CCTTCAGGTTAGGGGAGCTA+AGG - Chr8:70806249-70806268 None:intergenic 55.0%
! CGGATTGGAAGAAATGGCGG+TGG - Chr8:70805190-70805209 None:intergenic 55.0%
! TTCCCACACCCCACCTTTTG+TGG + Chr8:70806580-70806599 MsG0880046228.01.T01:CDS 55.0%
!! GCGAGAAATTGAGAAGCGCC+AGG - Chr8:70805138-70805157 None:intergenic 55.0%
AAGTCGCTGCTTGGGGGTTG+GGG - Chr8:70805840-70805859 None:intergenic 60.0%
ACCCCCAAGCAGCGACTTTG+GGG + Chr8:70805842-70805861 MsG0880046228.01.T01:intron 60.0%
CAAAGTCGCTGCTTGGGGGT+TGG - Chr8:70805842-70805861 None:intergenic 60.0%
CAACCCCCAAGCAGCGACTT+TGG + Chr8:70805840-70805859 MsG0880046228.01.T01:intron 60.0%
GACGACGTCGAATCCATCGC+CGG - Chr8:70805105-70805124 None:intergenic 60.0%
GATCATGAGACCACACCGCC+AGG + Chr8:70805731-70805750 MsG0880046228.01.T01:CDS 60.0%
TCCCCAAAGTCGCTGCTTGG+GGG - Chr8:70805846-70805865 None:intergenic 60.0%
!! GAAGTGAAGGTGCCGCGAAG+GGG - Chr8:70805168-70805187 None:intergenic 60.0%
!! GGAAGTGAAGGTGCCGCGAA+GGG - Chr8:70805169-70805188 None:intergenic 60.0%
!! TGGAAGTGAAGGTGCCGCGA+AGG - Chr8:70805170-70805189 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70804989 70807583 70804989 ID=MsG0880046228.01;Name=MsG0880046228.01
Chr8 mRNA 70804989 70807583 70804989 ID=MsG0880046228.01.T01;Parent=MsG0880046228.01;Name=MsG0880046228.01.T01;_AED=0.41;_eAED=0.58;_QI=119|0.25|0.4|1|0|0|5|0|203
Chr8 exon 70804989 70805209 70804989 ID=MsG0880046228.01.T01:exon:15180;Parent=MsG0880046228.01.T01
Chr8 exon 70805707 70805813 70805707 ID=MsG0880046228.01.T01:exon:15181;Parent=MsG0880046228.01.T01
Chr8 exon 70806463 70806606 70806463 ID=MsG0880046228.01.T01:exon:15182;Parent=MsG0880046228.01.T01
Chr8 exon 70806756 70806820 70806756 ID=MsG0880046228.01.T01:exon:15183;Parent=MsG0880046228.01.T01
Chr8 exon 70807390 70807583 70807390 ID=MsG0880046228.01.T01:exon:15184;Parent=MsG0880046228.01.T01
Chr8 five_prime_UTR 70804989 70805107 70804989 ID=MsG0880046228.01.T01:five_prime_utr;Parent=MsG0880046228.01.T01
Chr8 CDS 70805108 70805209 70805108 ID=MsG0880046228.01.T01:cds;Parent=MsG0880046228.01.T01
Chr8 CDS 70805707 70805813 70805707 ID=MsG0880046228.01.T01:cds;Parent=MsG0880046228.01.T01
Chr8 CDS 70806463 70806606 70806463 ID=MsG0880046228.01.T01:cds;Parent=MsG0880046228.01.T01
Chr8 CDS 70806756 70806820 70806756 ID=MsG0880046228.01.T01:cds;Parent=MsG0880046228.01.T01
Chr8 CDS 70807390 70807583 70807390 ID=MsG0880046228.01.T01:cds;Parent=MsG0880046228.01.T01
Gene Sequence

>MsG0880046228.01.T01

ATGGATTCGACGTCGTCTTCTTCTTCTCCTGGCGCTTCTCAATTTCTCGCTAATCTTCCCCTTCGCGGCACCTTCACTTCCACCGCCATTTCTTCCAATCCGGATCGGATGCGGGTTTATGTATGCGATCATGAGACCACACCGCCAGGTCTTATTTATTATCTTTCAAGTATTTTTGACATGTTTTTGCGACTTATAAAGCCTATATATGATTTTGACTCCCTTATTTATCCAGAAGGGCAACATATTAAGACTAATCAACAGAACATACTGATCAGAGCACTTAAATTGAAGAATGTATCTGACAGTTCAAAAAAGAGGTATCATTCCCACACCCCACCTTTTGTGGAAGAAACTGCTGAAAAGGTTTTGGGAGCTTCAGCCAAGAAACTAAATAATCAAACCACCCCTCAACAAGTATTATCTCGGTATTTCTCATCCTGTCTTACTATGGTTTTTAAACATGCAGAGGGATCAAATGGTCAAACATCCAGTAGGAACTTCCAGAGCTTGACTGTAGAGAGGCTCCGAGCTCTTTTGAGAGCTAAAGGTCTTCCAACCAAAGGAAAGAAGGCAAGTAGTCCTACAATTTTAACATATATTTGTACATAA
Protein sequence

>MsG0880046228.01.T01

MDSTSSSSSPGASQFLANLPLRGTFTSTAISSNPDRMRVYVCDHETTPPGLIYYLSSIFDMFLRLIKPIYDFDSLIYPEGQHIKTNQQNILIRALKLKNVSDSSKKRYHSHTPPFVEETAEKVLGASAKKLNNQTTPQQVLSRYFSSCLTMVFKHAEGSNGQTSSRNFQSLTVERLRALLRAKGLPTKGKKASSPTILTYICT*