AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046376.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046376.01.T01 MTR_4g106590 97.209 215 3 2 1 212 1 215 2.89e-146 406
MsG0880046376.01.T01 MTR_3g078613 71.362 213 47 5 1 212 1 200 9.24e-97 280
MsG0880046376.01.T01 MTR_3g078613 71.028 214 47 6 1 212 1 201 5.49e-95 276
MsG0880046376.01.T01 MTR_5g036480 72.028 143 36 1 25 163 15 157 9.89e-65 200
MsG0880046376.01.T01 MTR_1g049100 70.714 140 39 1 21 158 3 142 1.71e-63 196
MsG0880046376.01.T01 MTR_7g490310 55.556 162 63 2 21 173 4 165 1.66e-56 179
MsG0880046376.01.T01 MTR_8g038620 55.422 166 64 2 21 177 4 168 4.92e-55 173
MsG0880046376.01.T01 MTR_3g093860 59.091 132 50 2 27 155 19 149 1.14e-48 156
MsG0880046376.01.T01 MTR_3g088630 51.678 149 53 3 25 155 21 168 1.38e-44 149
MsG0880046376.01.T01 MTR_3g015490 49.701 167 64 3 24 177 2 161 1.54e-44 146
MsG0880046376.01.T01 MTR_6g007460 40.909 198 64 2 16 160 1 198 3.20e-38 131
MsG0880046376.01.T01 MTR_4g051330 50.000 74 37 0 104 177 77 150 2.83e-18 78.6
MsG0880046376.01.T01 MTR_8g024260 29.771 131 83 1 28 158 38 159 3.77e-15 73.9
MsG0880046376.01.T01 MTR_3g092780 26.115 157 107 1 26 182 56 203 8.44e-15 72.8
MsG0880046376.01.T01 MTR_3g092780 26.115 157 107 1 26 182 56 203 1.11e-14 72.4
MsG0880046376.01.T01 MTR_3g086100 31.206 141 82 5 20 160 14 139 2.21e-14 71.6
MsG0880046376.01.T01 MTR_7g117705 33.846 130 75 3 26 155 9 127 2.22e-14 71.6
MsG0880046376.01.T01 MTR_3g092780 30.000 130 82 1 26 155 56 176 2.61e-14 71.6
MsG0880046376.01.T01 MTR_3g092780 30.000 130 82 1 26 155 56 176 3.08e-14 71.2
MsG0880046376.01.T01 MTR_7g118260 28.994 169 105 4 26 191 14 170 1.17e-13 69.3
MsG0880046376.01.T01 MTR_8g079940 29.577 142 85 4 20 161 26 152 4.82e-13 67.8
MsG0880046376.01.T01 MTR_7g118260 26.582 158 107 2 26 183 14 162 7.69e-13 67.0
MsG0880046376.01.T01 MTR_4g061360 30.769 130 81 1 26 155 89 209 7.96e-13 67.0
MsG0880046376.01.T01 MTR_1g013180 30.556 144 85 3 12 155 149 277 3.20e-12 65.5
MsG0880046376.01.T01 MTR_1g067110 30.000 130 82 2 26 155 85 205 4.75e-12 64.7
MsG0880046376.01.T01 MTR_1g067110 30.000 130 82 2 26 155 85 205 5.06e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046376.01.T01 AT3G48100 66.292 178 57 2 5 179 2 179 3.28e-77 230
MsG0880046376.01.T01 AT5G62920 73.684 152 40 0 26 177 25 176 8.68e-74 221
MsG0880046376.01.T01 AT1G74890 72.973 148 37 2 25 169 17 164 7.81e-70 212
MsG0880046376.01.T01 AT1G59940 58.291 199 73 3 16 205 23 220 1.07e-68 210
MsG0880046376.01.T01 AT1G19050 63.529 170 46 3 3 166 2 161 3.97e-68 207
MsG0880046376.01.T01 AT1G10470 72.857 140 38 0 16 155 10 149 1.35e-67 207
MsG0880046376.01.T01 AT1G59940 58.291 199 73 3 16 205 115 312 2.45e-67 209
MsG0880046376.01.T01 AT1G10470 72.857 140 38 0 16 155 24 163 3.78e-67 207
MsG0880046376.01.T01 AT3G57040 59.333 150 51 2 21 160 4 153 2.69e-55 176
MsG0880046376.01.T01 AT3G57040 59.333 150 51 2 21 160 4 153 2.69e-55 176
MsG0880046376.01.T01 AT2G41310 60.417 144 49 1 24 159 7 150 5.18e-55 175
MsG0880046376.01.T01 AT2G40670 61.940 134 48 1 25 155 28 161 2.00e-54 171
MsG0880046376.01.T01 AT3G56380 62.121 132 49 1 25 155 19 150 5.17e-54 170
MsG0880046376.01.T01 AT2G40670 61.481 135 48 2 25 155 28 162 1.04e-52 167
MsG0880046376.01.T01 AT3G56380 61.654 133 49 2 25 155 19 151 3.95e-52 165
MsG0880046376.01.T01 AT1G10470 67.692 65 20 1 103 166 35 99 5.22e-22 89.0
MsG0880046376.01.T01 AT2G07440 64.286 56 20 0 104 159 9 64 2.53e-16 72.8
MsG0880046376.01.T01 AT1G67710 32.258 155 90 5 16 167 1 143 1.63e-15 75.1
MsG0880046376.01.T01 AT5G24470 30.075 133 84 1 26 158 50 173 2.31e-15 74.3
MsG0880046376.01.T01 AT5G07210 28.571 161 102 3 25 185 15 162 9.08e-15 72.8
MsG0880046376.01.T01 AT2G46790 28.462 130 84 1 26 155 37 157 1.73e-13 68.9
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 1.76e-13 68.9
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 1.76e-13 68.9
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 1.76e-13 68.9
MsG0880046376.01.T01 AT2G46790 28.462 130 84 1 26 155 37 157 2.09e-13 68.6
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 2.65e-13 68.6
MsG0880046376.01.T01 AT2G25180 29.577 142 85 4 14 155 8 134 2.87e-13 68.6
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 3.58e-13 68.2
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 3.58e-13 68.2
MsG0880046376.01.T01 AT5G60100 32.308 130 79 2 26 155 64 184 3.58e-13 68.2
MsG0880046376.01.T01 AT4G31920 28.169 142 87 4 14 155 8 134 1.77e-12 66.2
MsG0880046376.01.T01 AT5G02810 29.231 130 83 2 26 155 78 198 1.44e-11 63.5
MsG0880046376.01.T01 AT2G01760 30.573 157 88 7 17 172 5 141 2.84e-11 62.4

Find 44 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACATTAGTATTGCAAAAT+TGG 0.190761 8:-72593746 None:intergenic
CTCTCATGATAAAATCTTTC+AGG 0.209124 8:-72593521 None:intergenic
TCATAATCTTGATTTCTTAG+AGG 0.316444 8:-72593694 None:intergenic
TGGTTAACAAATTCAAAATA+TGG 0.321894 8:-72593767 None:intergenic
GTCGAATTTGACGGAGTTGA+TGG 0.327382 8:+72591848 MsG0880046376.01.T01:CDS
TTCACTAATTTGCAGGTGTT+TGG 0.354372 8:+72593443 MsG0880046376.01.T01:intron
TTGCAAAATTGGAGAAATAT+AGG 0.385342 8:-72593735 None:intergenic
TTCTTAGAGGATAATGTTGA+TGG 0.406515 8:-72593681 None:intergenic
TTGATGGAGGAATCACCTTC+AGG 0.454395 8:+72591864 MsG0880046376.01.T01:CDS
TCTAAGATTTAAAATGAGAA+AGG 0.461855 8:+72593807 MsG0880046376.01.T01:three_prime_UTR
TATTCCATGCCGGGGATGAC+AGG 0.470500 8:+72592297 MsG0880046376.01.T01:CDS
CTTACATCTGACAATTTGAC+TGG 0.476820 8:-72593495 None:intergenic
CTAAGATTTAAAATGAGAAA+GGG 0.490694 8:+72593808 MsG0880046376.01.T01:three_prime_UTR
ATGACGGATTATTCCATGCC+GGG 0.493470 8:+72592288 MsG0880046376.01.T01:CDS
CAGTTTGCTATGGCTGCCGC+CGG 0.493752 8:+72591813 MsG0880046376.01.T01:exon
ATTCATTGTTCAGTTTGCTA+TGG 0.498719 8:+72591803 MsG0880046376.01.T01:exon
GATGGAGAGAACAGTGATGT+TGG 0.500241 8:+72592140 MsG0880046376.01.T01:CDS
GAGGAATCACCTTCAGGTGC+AGG 0.503243 8:+72591870 MsG0880046376.01.T01:CDS
TTGAAGATTTCTTCATGCAA+AGG 0.508242 8:+72591954 MsG0880046376.01.T01:CDS
GAAGGTTAATTTGATAATGA+CGG 0.519870 8:+72592272 MsG0880046376.01.T01:CDS
ACTAATTTGCAGGTGTTTGG+AGG 0.520826 8:+72593446 MsG0880046376.01.T01:intron
ATTTGCAGGTGTTTGGAGGA+AGG 0.521653 8:+72593450 MsG0880046376.01.T01:intron
TGAATTACTCAAGAAAATCA+AGG 0.543151 8:+72592323 MsG0880046376.01.T01:CDS
AATTCATATCCTGTCATCCC+CGG 0.556181 8:-72592306 None:intergenic
TCCGACGACATGATCACCAC+TGG 0.559021 8:-72592516 None:intergenic
GTGTTTGGAGGAAGGAGCAG+AGG 0.569038 8:+72593458 MsG0880046376.01.T01:CDS
ATATCCTGTCATCCCCGGCA+TGG 0.579959 8:-72592301 None:intergenic
AGAGTACAAACTGTATAGAC+TGG 0.582714 8:-72593787 None:intergenic
GATAATGTTGATGGCGAGAG+TGG 0.585842 8:-72593672 None:intergenic
GTTATGGTGGCAGGGTGTGA+AGG 0.590843 8:+72592254 MsG0880046376.01.T01:intron
TCAACTCCGTCAAATTCGAC+CGG 0.594767 8:-72591845 None:intergenic
TCCAGTGGTGATCATGTCGT+CGG 0.595178 8:+72592515 MsG0880046376.01.T01:CDS
TGCAATTCACCTGCACCTGA+AGG 0.595358 8:-72591879 None:intergenic
AATGACGGATTATTCCATGC+CGG 0.601249 8:+72592287 MsG0880046376.01.T01:CDS
TATCATGAGAGGTGAAGTGA+AGG 0.611120 8:+72593533 MsG0880046376.01.T01:CDS
ATGAGAGGTGAAGTGAAGGA+TGG 0.617352 8:+72593537 MsG0880046376.01.T01:CDS
GGATCACATGAATGACGCAT+TGG 0.617664 8:-72593630 None:intergenic
ATTCGACCGGAAAATCTCGC+CGG 0.617787 8:-72591832 None:intergenic
GAATTTGACGGAGTTGATGG+AGG 0.621403 8:+72591851 MsG0880046376.01.T01:CDS
GAGAATGTAGTTGATAGAGA+TGG 0.621435 8:-72593606 None:intergenic
TGACGGATTATTCCATGCCG+GGG 0.653217 8:+72592289 MsG0880046376.01.T01:CDS
CGACCGGAAAATCTCGCCGG+CGG 0.669618 8:-72591829 None:intergenic
GGTGAGAACACTGACGATGG+TGG 0.724751 8:-72593651 None:intergenic
AGTGGTGAGAACACTGACGA+TGG 0.780723 8:-72593654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTTATTTTAT+TGG + Chr8:72593033-72593052 MsG0880046376.01.T01:intron 0.0%
!! AATAAAAAGAAACAAATAAA+AGG + Chr8:72593162-72593181 MsG0880046376.01.T01:intron 10.0%
!!! TTTGTTTCTTTTTATTTTTT+TGG - Chr8:72593158-72593177 None:intergenic 10.0%
!! AAACAAATAAAAGGAATATT+TGG + Chr8:72593171-72593190 MsG0880046376.01.T01:intron 15.0%
!! ATATGTACATTTGTATTATA+TGG + Chr8:72593281-72593300 MsG0880046376.01.T01:intron 15.0%
!!! ATTGATTTTGAAAATGTTTT+TGG + Chr8:72592051-72592070 MsG0880046376.01.T01:intron 15.0%
!!! ATTTTGAAATTTTATATTGG+AGG + Chr8:72592423-72592442 MsG0880046376.01.T01:intron 15.0%
!! AAATAAAACTATTAAGAAGC+AGG - Chr8:72593424-72593443 None:intergenic 20.0%
!! AACTATCAACAATTCAAATA+AGG - Chr8:72592381-72592400 None:intergenic 20.0%
!! CAAGGTGATTAATTAATTAT+TGG + Chr8:72592341-72592360 MsG0880046376.01.T01:intron 20.0%
!! TGGTTAACAAATTCAAAATA+TGG - Chr8:72593770-72593789 None:intergenic 20.0%
!!! ACAAATGTACATATTCTTTT+GGG - Chr8:72593275-72593294 None:intergenic 20.0%
!!! ATAACAGAATCACTATTTTT+TGG + Chr8:72593838-72593857 MsG0880046376.01.T01:three_prime_UTR 20.0%
!!! CTAAGATTTAAAATGAGAAA+GGG + Chr8:72593808-72593827 MsG0880046376.01.T01:three_prime_UTR 20.0%
!!! TACAAATGTACATATTCTTT+TGG - Chr8:72593276-72593295 None:intergenic 20.0%
!!! TCTAAGATTTAAAATGAGAA+AGG + Chr8:72593807-72593826 MsG0880046376.01.T01:three_prime_UTR 20.0%
!!! TTATTTGTTAACACTAAGAA+CGG + Chr8:72592840-72592859 MsG0880046376.01.T01:intron 20.0%
!!! TTTGTTTTTTGTTTCAGTTA+CGG + Chr8:72592076-72592095 MsG0880046376.01.T01:intron 20.0%
!!! TTTTATTTTCACTAATTTGC+AGG + Chr8:72593436-72593455 MsG0880046376.01.T01:intron 20.0%
! ACAAATAAACTTAAGTAGCA+TGG - Chr8:72592828-72592847 None:intergenic 25.0%
! ATGTAAGCAAATTATGTTTC+TGG + Chr8:72592168-72592187 MsG0880046376.01.T01:intron 25.0%
! CAGATTAGATGCATATTTAT+GGG - Chr8:72592706-72592725 None:intergenic 25.0%
! GAATTTATTTCCTGATTAAG+TGG - Chr8:72592729-72592748 None:intergenic 25.0%
! TCATAATCTTGATTTCTTAG+AGG - Chr8:72593697-72593716 None:intergenic 25.0%
! TGAATTACTCAAGAAAATCA+AGG + Chr8:72592323-72592342 MsG0880046376.01.T01:CDS 25.0%
! TTGCAAAATTGGAGAAATAT+AGG - Chr8:72593738-72593757 None:intergenic 25.0%
!! ATATTTGGCAAGAATCTTTT+AGG + Chr8:72593186-72593205 MsG0880046376.01.T01:intron 25.0%
!! ATGTTTTCATACGATTGATA+AGG - Chr8:72593099-72593118 None:intergenic 25.0%
!! TGAAATTTTATATTGGAGGA+AGG + Chr8:72592427-72592446 MsG0880046376.01.T01:intron 25.0%
!!! GAAGGTTAATTTGATAATGA+CGG + Chr8:72592272-72592291 MsG0880046376.01.T01:CDS 25.0%
!!! GTTGTTGTTTTGTTATGTTA+TGG + Chr8:72592238-72592257 MsG0880046376.01.T01:intron 25.0%
ACATTTACTTTCTATGCTGT+GGG + Chr8:72593381-72593400 MsG0880046376.01.T01:intron 30.0%
ACTTTGCTTGGATGTTAATT+TGG + Chr8:72592198-72592217 MsG0880046376.01.T01:intron 30.0%
ATGTAATTGTAATTGCCACA+CGG + Chr8:72593230-72593249 MsG0880046376.01.T01:intron 30.0%
ATTACAATTACATCGGTAGA+AGG - Chr8:72593223-72593242 None:intergenic 30.0%
CTCTCATGATAAAATCTTTC+AGG - Chr8:72593524-72593543 None:intergenic 30.0%
GAAAAGAAACTGAAAAACAC+AGG - Chr8:72591758-72591777 None:intergenic 30.0%
GAAATCTGGAGAACTTAATT+TGG - Chr8:72592973-72592992 None:intergenic 30.0%
GCAGATTAGATGCATATTTA+TGG - Chr8:72592707-72592726 None:intergenic 30.0%
GGACATTAGTATTGCAAAAT+TGG - Chr8:72593749-72593768 None:intergenic 30.0%
TCTGGATTATTAACTTTGCT+TGG + Chr8:72592186-72592205 MsG0880046376.01.T01:intron 30.0%
TGATCCAAGTTAAAAGAGTT+GGG - Chr8:72593004-72593023 None:intergenic 30.0%
TGGTGAATAACATGTGTATT+TGG + Chr8:72592612-72592631 MsG0880046376.01.T01:intron 30.0%
TGTGGCAATTACAATTACAT+CGG - Chr8:72593230-72593249 None:intergenic 30.0%
TGTTTCAAATCACTCAGATA+GGG + Chr8:72592902-72592921 MsG0880046376.01.T01:intron 30.0%
TTATGCCTCCATATCTATTT+GGG - Chr8:72592763-72592782 None:intergenic 30.0%
TTCTTAGAGGATAATGTTGA+TGG - Chr8:72593684-72593703 None:intergenic 30.0%
TTGAAGATTTCTTCATGCAA+AGG + Chr8:72591954-72591973 MsG0880046376.01.T01:CDS 30.0%
TTGGAACTCGAATAAGTTTA+TGG + Chr8:72593052-72593071 MsG0880046376.01.T01:intron 30.0%
! AATTTTATATTGGAGGAAGG+TGG + Chr8:72592430-72592449 MsG0880046376.01.T01:intron 30.0%
! CTGAAAGATTTTATCATGAG+AGG + Chr8:72593522-72593541 MsG0880046376.01.T01:CDS 30.0%
! TGTATTATATGGAGTGCTTT+AGG + Chr8:72593292-72593311 MsG0880046376.01.T01:intron 30.0%
!! ATTCATTGTTCAGTTTGCTA+TGG + Chr8:72591803-72591822 MsG0880046376.01.T01:exon 30.0%
!! CTTTTGATTCTAGTGTGATT+TGG + Chr8:72592588-72592607 MsG0880046376.01.T01:intron 30.0%
!! GTTGTTTTGTTATGTTATGG+TGG + Chr8:72592241-72592260 MsG0880046376.01.T01:intron 30.0%
!! TATGGTGTTATTTGTTTCCT+TGG + Chr8:72593070-72593089 MsG0880046376.01.T01:intron 30.0%
!!! ATGTTTTGACTCGAATTGAT+AGG + Chr8:72592541-72592560 MsG0880046376.01.T01:CDS 30.0%
AAACTATTAAGAAGCAGGAC+AGG - Chr8:72593419-72593438 None:intergenic 35.0%
ACACCAGATTAGAATTCAGT+AGG - Chr8:72592670-72592689 None:intergenic 35.0%
AGAGTACAAACTGTATAGAC+TGG - Chr8:72593790-72593809 None:intergenic 35.0%
CAATAATATGTAGAACCGTG+TGG - Chr8:72593248-72593267 None:intergenic 35.0%
CACATTTACTTTCTATGCTG+TGG + Chr8:72593380-72593399 MsG0880046376.01.T01:intron 35.0%
CTGATCCAAGTTAAAAGAGT+TGG - Chr8:72593005-72593024 None:intergenic 35.0%
CTGCTGAAATTAACACAAAC+AGG - Chr8:72592472-72592491 None:intergenic 35.0%
CTGTTTGTGTTAATTTCAGC+AGG + Chr8:72592470-72592489 MsG0880046376.01.T01:intron 35.0%
CTTACATCTGACAATTTGAC+TGG - Chr8:72593498-72593517 None:intergenic 35.0%
CTTATGCCTCCATATCTATT+TGG - Chr8:72592764-72592783 None:intergenic 35.0%
GTGTAGATCCCAAATAGATA+TGG + Chr8:72592752-72592771 MsG0880046376.01.T01:intron 35.0%
GTGTTTCAAATCACTCAGAT+AGG + Chr8:72592901-72592920 MsG0880046376.01.T01:intron 35.0%
GTTCCTACTGAATTCTAATC+TGG + Chr8:72592664-72592683 MsG0880046376.01.T01:intron 35.0%
TAGATCCCAAATAGATATGG+AGG + Chr8:72592755-72592774 MsG0880046376.01.T01:intron 35.0%
TTAAAAGAGTTGGGTCTTCA+GGG - Chr8:72592995-72593014 None:intergenic 35.0%
TTTAACTGTTGAAGCTCCAT+AGG + Chr8:72592791-72592810 MsG0880046376.01.T01:intron 35.0%
! AAGAAGAGCTCTTCAGTTTT+TGG + Chr8:72592112-72592131 MsG0880046376.01.T01:CDS 35.0%
! AGAAGAGCTCTTCAGTTTTT+GGG + Chr8:72592113-72592132 MsG0880046376.01.T01:CDS 35.0%
! ATCTAATCTGCCACTTAATC+AGG + Chr8:72592716-72592735 MsG0880046376.01.T01:intron 35.0%
! TGATTCTAGTGTGATTTGGA+TGG + Chr8:72592592-72592611 MsG0880046376.01.T01:intron 35.0%
! TTCACTAATTTGCAGGTGTT+TGG + Chr8:72593443-72593462 MsG0880046376.01.T01:intron 35.0%
! TTTGTTATGTTATGGTGGCA+GGG + Chr8:72592246-72592265 MsG0880046376.01.T01:intron 35.0%
!! AAGACCCAACTCTTTTAACT+TGG + Chr8:72592997-72593016 MsG0880046376.01.T01:intron 35.0%
!! GAGAATGTAGTTGATAGAGA+TGG - Chr8:72593609-72593628 None:intergenic 35.0%
!! TTTTGTTATGTTATGGTGGC+AGG + Chr8:72592245-72592264 MsG0880046376.01.T01:intron 35.0%
AATTCATATCCTGTCATCCC+CGG - Chr8:72592309-72592328 None:intergenic 40.0%
GTTAAAAGAGTTGGGTCTTC+AGG - Chr8:72592996-72593015 None:intergenic 40.0%
TACGATTGATAAGGTTGCCA+AGG - Chr8:72593090-72593109 None:intergenic 40.0%
TATCATGAGAGGTGAAGTGA+AGG + Chr8:72593533-72593552 MsG0880046376.01.T01:CDS 40.0%
TGAAGTGATTGTAGAGATGC+AGG + Chr8:72592864-72592883 MsG0880046376.01.T01:intron 40.0%
TGTCGAAAGTTGTTCTTGCT+AGG - Chr8:72593362-72593381 None:intergenic 40.0%
TTTACTTTCTATGCTGTGGG+TGG + Chr8:72593384-72593403 MsG0880046376.01.T01:intron 40.0%
! ACTAATTTGCAGGTGTTTGG+AGG + Chr8:72593446-72593465 MsG0880046376.01.T01:intron 40.0%
! GATTTTCCGGTCGAATTTGA+CGG + Chr8:72591839-72591858 MsG0880046376.01.T01:CDS 40.0%
!! AATGACGGATTATTCCATGC+CGG + Chr8:72592287-72592306 MsG0880046376.01.T01:CDS 40.0%
!! AGCAGGAGTCTTCTGTTTTT+AGG + Chr8:72592487-72592506 MsG0880046376.01.T01:intron 40.0%
!!! AGCTCTTCAGTTTTTGGGAT+TGG + Chr8:72592118-72592137 MsG0880046376.01.T01:CDS 40.0%
!!! CTTCAGTTTTTGGGATTGGA+TGG + Chr8:72592122-72592141 MsG0880046376.01.T01:CDS 40.0%
!!! GCAGGAGTCTTCTGTTTTTA+GGG + Chr8:72592488-72592507 MsG0880046376.01.T01:intron 40.0%
!!! TGTTTTTAGGGAGATTCCAG+TGG + Chr8:72592500-72592519 MsG0880046376.01.T01:CDS 40.0%
AGAAGCAGGACAGGATATAC+TGG - Chr8:72593410-72593429 None:intergenic 45.0%
ATGAGAGGTGAAGTGAAGGA+TGG + Chr8:72593537-72593556 MsG0880046376.01.T01:CDS 45.0%
ATTTGCAGGTGTTTGGAGGA+AGG + Chr8:72593450-72593469 MsG0880046376.01.T01:intron 45.0%
CATGGCAAACACAGATCCTA+TGG - Chr8:72592810-72592829 None:intergenic 45.0%
GATGGAGAGAACAGTGATGT+TGG + Chr8:72592140-72592159 MsG0880046376.01.T01:CDS 45.0%
GGATCACATGAATGACGCAT+TGG - Chr8:72593633-72593652 None:intergenic 45.0%
GTCGAATTTGACGGAGTTGA+TGG + Chr8:72591848-72591867 MsG0880046376.01.T01:CDS 45.0%
TCAACTCCGTCAAATTCGAC+CGG - Chr8:72591848-72591867 None:intergenic 45.0%
TTGATGGAGGAATCACCTTC+AGG + Chr8:72591864-72591883 MsG0880046376.01.T01:CDS 45.0%
! TGGCAAGAATCTTTTAGGCC+TGG + Chr8:72593191-72593210 MsG0880046376.01.T01:intron 45.0%
!! ATGACGGATTATTCCATGCC+GGG + Chr8:72592288-72592307 MsG0880046376.01.T01:CDS 45.0%
!! GAATTTGACGGAGTTGATGG+AGG + Chr8:72591851-72591870 MsG0880046376.01.T01:CDS 45.0%
!! GATAATGTTGATGGCGAGAG+TGG - Chr8:72593675-72593694 None:intergenic 45.0%
!!! TTTATTTTGAAATTTTATAT+TGG + Chr8:72592420-72592439 MsG0880046376.01.T01:intron 5.0%
AGTGGTGAGAACACTGACGA+TGG - Chr8:72593657-72593676 None:intergenic 50.0%
ATTCGACCGGAAAATCTCGC+CGG - Chr8:72591835-72591854 None:intergenic 50.0%
GTTGGGTCTTCAGGGAAATC+TGG - Chr8:72592987-72593006 None:intergenic 50.0%
TCCAGTGGTGATCATGTCGT+CGG + Chr8:72592515-72592534 MsG0880046376.01.T01:CDS 50.0%
TGCAATTCACCTGCACCTGA+AGG - Chr8:72591882-72591901 None:intergenic 50.0%
!! TGACGGATTATTCCATGCCG+GGG + Chr8:72592289-72592308 MsG0880046376.01.T01:CDS 50.0%
ATATCCTGTCATCCCCGGCA+TGG - Chr8:72592304-72592323 None:intergenic 55.0%
ATCGGTAGAAGGTTGCTGCC+AGG - Chr8:72593212-72593231 None:intergenic 55.0%
GAGGAATCACCTTCAGGTGC+AGG + Chr8:72591870-72591889 MsG0880046376.01.T01:CDS 55.0%
GGTGAGAACACTGACGATGG+TGG - Chr8:72593654-72593673 None:intergenic 55.0%
GTGTTTGGAGGAAGGAGCAG+AGG + Chr8:72593458-72593477 MsG0880046376.01.T01:CDS 55.0%
GTTATGGTGGCAGGGTGTGA+AGG + Chr8:72592254-72592273 MsG0880046376.01.T01:intron 55.0%
TATTCCATGCCGGGGATGAC+AGG + Chr8:72592297-72592316 MsG0880046376.01.T01:CDS 55.0%
TCCGACGACATGATCACCAC+TGG - Chr8:72592519-72592538 None:intergenic 55.0%
!! CAGTTTGCTATGGCTGCCGC+CGG + Chr8:72591813-72591832 MsG0880046376.01.T01:exon 60.0%
CGACCGGAAAATCTCGCCGG+CGG - Chr8:72591832-72591851 None:intergenic 65.0%
! CTGCCGCCGGCGAGATTTTC+CGG + Chr8:72591826-72591845 MsG0880046376.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 72591748 72593863 72591748 ID=MsG0880046376.01;Name=MsG0880046376.01
Chr8 mRNA 72591748 72593863 72591748 ID=MsG0880046376.01.T01;Parent=MsG0880046376.01;Name=MsG0880046376.01.T01;_AED=0.32;_eAED=0.32;_QI=74|1|1|1|1|1|5|147|212
Chr8 exon 72591748 72591975 72591748 ID=MsG0880046376.01.T01:exon:11467;Parent=MsG0880046376.01.T01
Chr8 exon 72592093 72592169 72592093 ID=MsG0880046376.01.T01:exon:11468;Parent=MsG0880046376.01.T01
Chr8 exon 72592267 72592344 72592267 ID=MsG0880046376.01.T01:exon:11469;Parent=MsG0880046376.01.T01
Chr8 exon 72592492 72592562 72592492 ID=MsG0880046376.01.T01:exon:11470;Parent=MsG0880046376.01.T01
Chr8 exon 72593458 72593863 72593458 ID=MsG0880046376.01.T01:exon:11471;Parent=MsG0880046376.01.T01
Chr8 five_prime_UTR 72591748 72591821 72591748 ID=MsG0880046376.01.T01:five_prime_utr;Parent=MsG0880046376.01.T01
Chr8 CDS 72591822 72591975 72591822 ID=MsG0880046376.01.T01:cds;Parent=MsG0880046376.01.T01
Chr8 CDS 72592093 72592169 72592093 ID=MsG0880046376.01.T01:cds;Parent=MsG0880046376.01.T01
Chr8 CDS 72592267 72592344 72592267 ID=MsG0880046376.01.T01:cds;Parent=MsG0880046376.01.T01
Chr8 CDS 72592492 72592562 72592492 ID=MsG0880046376.01.T01:cds;Parent=MsG0880046376.01.T01
Chr8 CDS 72593458 72593716 72593458 ID=MsG0880046376.01.T01:cds;Parent=MsG0880046376.01.T01
Chr8 three_prime_UTR 72593717 72593863 72593717 ID=MsG0880046376.01.T01:three_prime_utr;Parent=MsG0880046376.01.T01
Gene Sequence

>MsG0880046376.01.T01

ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAGTTGATGGAGGAATCACCTTCAGGTGCAGGTGAATTGCATGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTGATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTTGAGAGTGCAAGAAGAGCTCTTCAGTTTTTGGGATTGGATGGAGAGAACAGTGATGTTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTTTGGAGGAAGGAGCAGAGGATTTTTTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCCTGAAAGATTTTATCATGAGAGGTGAAGTGAAGGATGGTGAGAAATGTTCTCTCAAAAGAATGCGATCATCAGATGATTGTAGTCCATCTCTATCAACTACATTCTCACCAATGCGTCATTCATGTGATCCACCATCGTCAGTGTTCTCACCACTCTCGCCATCAACATTATCCTCTAAGAAATCAAGATTATGA
Protein sequence

>MsG0880046376.01.T01

MAAAGEIFRSNLTELMEESPSGAGELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQFLGLDGENSDVGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGEKCSLKRMRSSDDCSPSLSTTFSPMRHSCDPPSSVFSPLSPSTLSSKKSRL*