AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046420.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046420.01.T01 MTR_4g107830 92.256 297 8 1 1 282 1 297 0.0 557
MsG0880046420.01.T01 MTR_4g107810 95.804 286 12 0 1 286 1 286 0.0 553
MsG0880046420.01.T01 MTR_4g107760 95.804 286 12 0 1 286 1 286 0.0 553
MsG0880046420.01.T01 MTR_4g107810 95.804 286 12 0 1 286 61 346 0.0 552
MsG0880046420.01.T01 MTR_4g107720 94.326 282 16 0 1 282 1 282 0.0 536
MsG0880046420.01.T01 MTR_6g011380 83.688 282 46 0 1 282 1 282 7.67e-180 497
MsG0880046420.01.T01 MTR_8g469160 79.859 283 57 0 1 283 1 283 3.02e-177 490
MsG0880046420.01.T01 MTR_4g107730 87.153 288 29 3 1 286 1 282 3.36e-177 490
MsG0880046420.01.T01 MTR_6g460470 56.690 284 121 1 1 282 1 284 8.50e-117 337
MsG0880046420.01.T01 MTR_4g107700 96.296 81 3 0 202 282 6 86 1.30e-49 159
MsG0880046420.01.T01 MTR_3g093220 30.055 183 122 4 19 199 71 249 2.65e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046420.01.T01 AT5G62740 89.362 282 30 0 1 282 1 282 0.0 530
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT1G69840 82.517 286 50 0 1 286 1 286 6.58e-174 482
MsG0880046420.01.T01 AT3G01290 78.723 282 60 0 1 282 1 282 5.98e-170 472
MsG0880046420.01.T01 AT5G51570 57.042 284 120 1 1 282 1 284 8.01e-122 350

Find 84 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACACTATGAAAGAAAT+TGG 0.142368 8:+73227182 MsG0880046420.01.T01:CDS
ATGTTCTCATTGCAGTAATT+AGG 0.205184 8:+73226160 MsG0880046420.01.T01:intron
TACTTCGTATGTGGTTTATA+TGG 0.223944 8:+73227327 MsG0880046420.01.T01:three_prime_UTR
GCCTTCTTCACATGCTTATC+TGG 0.244299 8:-73226396 None:intergenic
TTGCAGCAGTGAAAAGAAAA+TGG 0.266335 8:+73225462 MsG0880046420.01.T01:exon
GGAGAAGTCCATCACGAATT+TGG 0.279174 8:-73227271 None:intergenic
GTATCATCCAAGTTGAGTTT+TGG 0.298817 8:-73226192 None:intergenic
CTCTCTTCGGGTTCAACAAT+TGG 0.301031 8:+73225621 MsG0880046420.01.T01:CDS
TGTTCTCATTGCAGTAATTA+GGG 0.306159 8:+73226161 MsG0880046420.01.T01:intron
ATACACAATAAGGTGAAGTT+TGG 0.324230 8:+73227471 MsG0880046420.01.T01:three_prime_UTR
TGCTGGTCATCTCTCTCTTC+GGG 0.329796 8:+73225609 MsG0880046420.01.T01:CDS
TATAGATATAGAAGCCTTCA+TGG 0.341044 8:-73225360 None:intergenic
TTGACACTATGAAAGAAATT+GGG 0.344707 8:+73227183 MsG0880046420.01.T01:CDS
CAACAGGCTATGTCAGCTTA+TGG 0.345528 8:+73226336 MsG0880046420.01.T01:intron
TTGCTGGTCATCTCTCTCTT+CGG 0.350694 8:+73225608 MsG0880046420.01.T01:CDS
GTGGCTATGAAAGAAGGTTT+TGG 0.357672 8:+73225523 MsG0880046420.01.T01:CDS
TTCCTTGGAAAACGAATTGC+TGG 0.386474 8:+73225592 MsG0880046420.01.T01:CDS
GGATTGAGAGACAGTGTGAT+TGG 0.394088 8:+73227092 MsG0880046420.01.T01:CDS
TGCAGCAGTGAAAAGAAAAT+GGG 0.404371 8:+73225463 MsG0880046420.01.T01:exon
TGAATTATATCATGCAAAAT+CGG 0.415242 8:-73225433 None:intergenic
ACTTCGTATGTGGTTTATAT+GGG 0.423613 8:+73227328 MsG0880046420.01.T01:three_prime_UTR
GCCAGATAAGCATGTGAAGA+AGG 0.431501 8:+73226395 MsG0880046420.01.T01:CDS
AATTCGTGATGGACTTCTCC+AGG 0.436039 8:+73227274 MsG0880046420.01.T01:CDS
TGCAAAAGATGTCATGGATA+TGG 0.437735 8:+73227142 MsG0880046420.01.T01:CDS
TTCTATTCCTACTTCGTATG+TGG 0.447754 8:+73227318 MsG0880046420.01.T01:three_prime_UTR
ATTTGAAAAGGTGCTTCAGC+CGG 0.463345 8:+73225549 MsG0880046420.01.T01:CDS
CATTGCATGCCATGGTTCCT+TGG 0.471591 8:+73225577 MsG0880046420.01.T01:CDS
GTCTAAATATCTCGCTGGGA+TGG 0.480437 8:+73227037 MsG0880046420.01.T01:CDS
TTCTATTCAATACCGTGCCT+TGG 0.481733 8:+73225989 MsG0880046420.01.T01:CDS
GTGGCTTGTATATAAATGTT+TGG 0.485454 8:+73225384 MsG0880046420.01.T01:five_prime_UTR
ATCGTTTGCCTTGTTTGCCA+AGG 0.508315 8:-73226006 None:intergenic
TAACAAACCAACCTTTGTCT+TGG 0.511154 8:-73225659 None:intergenic
TCTCAAGTGGCTATGAAAGA+AGG 0.511380 8:+73225517 MsG0880046420.01.T01:CDS
AATACTCACTTGTTCTCCGA+TGG 0.513736 8:+73227534 MsG0880046420.01.T01:three_prime_UTR
TTTGAAAAGGTGCTTCAGCC+GGG 0.514758 8:+73225550 MsG0880046420.01.T01:CDS
CATGGCATGCAATGGCATCC+CGG 0.521469 8:-73225568 None:intergenic
AATGAACACAGCAGAAGACT+TGG 0.521852 8:-73227213 None:intergenic
TCTAAATATCTCGCTGGGAT+GGG 0.525100 8:+73227038 MsG0880046420.01.T01:CDS
TTGCCTTGTTTGCCAAGGCA+CGG 0.526106 8:-73226001 None:intergenic
GTGTTCATTCCACATGGACC+TGG 0.527747 8:+73227227 MsG0880046420.01.T01:CDS
CAACGTCAAGCCATTGTGGA+TGG 0.529578 8:+73227071 MsG0880046420.01.T01:CDS
TCATGCAAAATCGGAATGCA+AGG 0.532219 8:-73225424 None:intergenic
CGGGATGCCATTGCATGCCA+TGG 0.534181 8:+73225569 MsG0880046420.01.T01:CDS
AATTTATACACATACGAAGT+AGG 0.541322 8:-73227443 None:intergenic
AAGGCTTCTATATCTATATG+TGG 0.548924 8:+73225365 MsG0880046420.01.T01:five_prime_UTR
AATAAAGCGAGCCGAGGGTG+AGG 0.551044 8:+73227010 MsG0880046420.01.T01:CDS
GCTGAGTCTAAATATCTCGC+TGG 0.552574 8:+73227032 MsG0880046420.01.T01:CDS
GACAAGTGCAAAAGATGTCA+TGG 0.553387 8:+73227136 MsG0880046420.01.T01:CDS
CAGTGTTCCAAAACTCAACT+TGG 0.553554 8:+73226185 MsG0880046420.01.T01:CDS
TATGATTAGCTGCAAGAATG+AGG 0.556005 8:+73226946 MsG0880046420.01.T01:intron
GCAACATCGCGAACAGCACC+AGG 0.556632 8:-73227245 None:intergenic
GCTATGAATGAAATCAATGC+TGG 0.558940 8:+73226417 MsG0880046420.01.T01:CDS
GAGAAACCACGATTCCATGA+AGG 0.559213 8:+73225346 MsG0880046420.01.T01:five_prime_UTR
TCTGCTGTGTTCATTCCACA+TGG 0.564187 8:+73227221 MsG0880046420.01.T01:CDS
ATACCGTGCCTTGGCAAACA+AGG 0.570829 8:+73225998 MsG0880046420.01.T01:CDS
GAACACAGCAGAAGACTTGG+AGG 0.574169 8:-73227210 None:intergenic
CACTTGTTCTCCGATGGTCA+AGG 0.577027 8:+73227540 MsG0880046420.01.T01:three_prime_UTR
TGACACTATGAAAGAAATTG+GGG 0.579718 8:+73227184 MsG0880046420.01.T01:CDS
CTGAGTCTAAATATCTCGCT+GGG 0.580679 8:+73227033 MsG0880046420.01.T01:CDS
CAAGGAACCATGGCATGCAA+TGG 0.581813 8:-73225576 None:intergenic
ATATAAACCACATACGAAGT+AGG 0.591815 8:-73227325 None:intergenic
CTATGACGAGCCTTGACCAT+CGG 0.595834 8:-73227550 None:intergenic
TTTAGACTCAGCCTCACCCT+CGG 0.596378 8:-73227021 None:intergenic
AAATGAAATTGCAAAAGCTG+TGG 0.603554 8:+73226227 MsG0880046420.01.T01:CDS
TGTGGAAGAAGAACTTGAGA+AGG 0.603618 8:+73226245 MsG0880046420.01.T01:CDS
ACTCATGAGTTAGAGAACCC+TGG 0.616759 8:-73227292 None:intergenic
GCAAGTTGATCAATCTCAAG+TGG 0.619072 8:+73225504 MsG0880046420.01.T01:CDS
GTTGCTAGCCAAATTCGTGA+TGG 0.622218 8:+73227263 MsG0880046420.01.T01:CDS
TACAAACTTAGCAACACAAG+GGG 0.623209 8:+73226035 MsG0880046420.01.T01:CDS
TTTACAAACTTAGCAACACA+AGG 0.632164 8:+73226033 MsG0880046420.01.T01:CDS
GAGGATCGCAGCTAATGAGA+AGG 0.632818 8:+73226965 MsG0880046420.01.T01:CDS
ATTCGTGATGGACTTCTCCA+GGG 0.634995 8:+73227275 MsG0880046420.01.T01:CDS
CTTGCAAATAAAGCGAGCCG+AGG 0.639259 8:+73227004 MsG0880046420.01.T01:CDS
TCGTCAACGTCAAGCCATTG+TGG 0.640251 8:+73227067 MsG0880046420.01.T01:CDS
TAGAAGCCTTCATGGAATCG+TGG 0.642228 8:-73225352 None:intergenic
CAAATGTGAGACCAAGACAA+AGG 0.650717 8:+73225648 MsG0880046420.01.T01:CDS
TTGCAAATAAAGCGAGCCGA+GGG 0.652348 8:+73227005 MsG0880046420.01.T01:CDS
CATGCAAAATCGGAATGCAA+GGG 0.654411 8:-73225423 None:intergenic
GTCTCTCAATCCATCCACAA+TGG 0.662038 8:-73227081 None:intergenic
GCAGCAGTGAAAAGAAAATG+GGG 0.668646 8:+73225464 MsG0880046420.01.T01:exon
CGAACAGCACCAGGTCCATG+TGG 0.675254 8:-73227236 None:intergenic
TTACAAACTTAGCAACACAA+GGG 0.685367 8:+73226034 MsG0880046420.01.T01:CDS
ATGTGGTTTATATGGGAGCG+TGG 0.696986 8:+73227335 MsG0880046420.01.T01:three_prime_UTR
TGTCAAAGTATTGAGTGACA+AGG 0.713018 8:-73227166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATAACAATATTGT+GGG - Chr8:73226470-73226489 None:intergenic 10.0%
!! AATAAAAATTAAAATTATCC+CGG - Chr8:73225760-73225779 None:intergenic 10.0%
!! TAAATATAATAACAATATTG+TGG - Chr8:73226471-73226490 None:intergenic 10.0%
!! TTATTTATATGAATTAAACT+TGG + Chr8:73226488-73226507 MsG0880046420.01.T01:intron 10.0%
!!! AAATTTTTTTATACACAATA+AGG + Chr8:73227461-73227480 MsG0880046420.01.T01:three_prime_UTR 10.0%
!!! GGATAATTTTAATTTTTATT+AGG + Chr8:73225760-73225779 MsG0880046420.01.T01:intron 10.0%
!!! TTTAATGTTTTTTTTTTGAA+CGG + Chr8:73227371-73227390 MsG0880046420.01.T01:three_prime_UTR 10.0%
!! AATATAATAACAATATTGTG+GGG - Chr8:73226469-73226488 None:intergenic 15.0%
!! TTTAATATTTATTTGCTTGT+AGG + Chr8:73225941-73225960 MsG0880046420.01.T01:intron 15.0%
!!! TTAATGTTTTTTTTTTGAAC+GGG + Chr8:73227372-73227391 MsG0880046420.01.T01:three_prime_UTR 15.0%
!! AAAAATTTGAGAACAATGTA+CGG - Chr8:73225899-73225918 None:intergenic 20.0%
!! ACAATTAGTATTTACAGATA+AGG + Chr8:73226280-73226299 MsG0880046420.01.T01:intron 20.0%
!! ATGTAACAAAAAACTATGTA+GGG + Chr8:73226605-73226624 MsG0880046420.01.T01:intron 20.0%
!! CCATAGTTAAGAAAATATAT+AGG - Chr8:73225815-73225834 None:intergenic 20.0%
!! TGAATTATATCATGCAAAAT+CGG - Chr8:73225436-73225455 None:intergenic 20.0%
!!! CCTATATATTTTCTTAACTA+TGG + Chr8:73225812-73225831 MsG0880046420.01.T01:intron 20.0%
!!! TTTACTCTTAGTTTTACAAT+TGG + Chr8:73225314-73225333 MsG0880046420.01.T01:five_prime_UTR 20.0%
!!! TTTACTTTATTCTCTAAAAG+AGG + Chr8:73226533-73226552 MsG0880046420.01.T01:intron 20.0%
!!! TTTTGCTGCAAAATTTATTT+TGG + Chr8:73226676-73226695 MsG0880046420.01.T01:intron 20.0%
! AATCAAAATAACATAGCACA+AGG - Chr8:73225792-73225811 None:intergenic 25.0%
! AATTTATACACATACGAAGT+AGG - Chr8:73227446-73227465 None:intergenic 25.0%
! CATGTAACAAAAAACTATGT+AGG + Chr8:73226604-73226623 MsG0880046420.01.T01:intron 25.0%
! GGAAACAGTATATGAAAATA+TGG - Chr8:73226922-73226941 None:intergenic 25.0%
! TTGACACTATGAAAGAAATT+GGG + Chr8:73227183-73227202 MsG0880046420.01.T01:CDS 25.0%
! TTTGACACTATGAAAGAAAT+TGG + Chr8:73227182-73227201 MsG0880046420.01.T01:CDS 25.0%
!! AACGGGATTTTTAATGTTTT+TGG + Chr8:73227389-73227408 MsG0880046420.01.T01:three_prime_UTR 25.0%
!! ATTGTTCTCAAATTTTTCCA+TGG + Chr8:73225902-73225921 MsG0880046420.01.T01:intron 25.0%
!! TTGTTCTCAAATTTTTCCAT+GGG + Chr8:73225903-73225922 MsG0880046420.01.T01:intron 25.0%
!!! AGGTTTTGGAAAATTTGAAA+AGG + Chr8:73225537-73225556 MsG0880046420.01.T01:CDS 25.0%
!!! ATTCAAGCTTATGTTTTTGA+TGG + Chr8:73226062-73226081 MsG0880046420.01.T01:CDS 25.0%
!!! ATTTATTTTGGAATTGACTC+CGG + Chr8:73226688-73226707 MsG0880046420.01.T01:intron 25.0%
AAATGAAATTGCAAAAGCTG+TGG + Chr8:73226227-73226246 MsG0880046420.01.T01:CDS 30.0%
AAGGCTTCTATATCTATATG+TGG + Chr8:73225365-73225384 MsG0880046420.01.T01:five_prime_UTR 30.0%
ACAAATCAACATTTATCCCA+TGG - Chr8:73225922-73225941 None:intergenic 30.0%
ACTTCGTATGTGGTTTATAT+GGG + Chr8:73227328-73227347 MsG0880046420.01.T01:three_prime_UTR 30.0%
AGCAATAAACATGCAATTAC+TGG + Chr8:73226105-73226124 MsG0880046420.01.T01:intron 30.0%
ATACACAATAAGGTGAAGTT+TGG + Chr8:73227471-73227490 MsG0880046420.01.T01:three_prime_UTR 30.0%
ATATAAACCACATACGAAGT+AGG - Chr8:73227328-73227347 None:intergenic 30.0%
ATCATAGCATAACCAACTAT+TGG - Chr8:73226735-73226754 None:intergenic 30.0%
ATGTTCTCATTGCAGTAATT+AGG + Chr8:73226160-73226179 MsG0880046420.01.T01:intron 30.0%
CAAAAACATAAGCTTGAATC+TGG - Chr8:73226061-73226080 None:intergenic 30.0%
TACTTCGTATGTGGTTTATA+TGG + Chr8:73227327-73227346 MsG0880046420.01.T01:three_prime_UTR 30.0%
TAGTTGGTTATGCTATGATA+TGG + Chr8:73226736-73226755 MsG0880046420.01.T01:intron 30.0%
TATAGATATAGAAGCCTTCA+TGG - Chr8:73225363-73225382 None:intergenic 30.0%
TGACACTATGAAAGAAATTG+GGG + Chr8:73227184-73227203 MsG0880046420.01.T01:CDS 30.0%
TGTTCTCATTGCAGTAATTA+GGG + Chr8:73226161-73226180 MsG0880046420.01.T01:intron 30.0%
TTACAAACTTAGCAACACAA+GGG + Chr8:73226034-73226053 MsG0880046420.01.T01:CDS 30.0%
TTTACAAACTTAGCAACACA+AGG + Chr8:73226033-73226052 MsG0880046420.01.T01:CDS 30.0%
TTTGTTACATGTAAGACGTA+CGG - Chr8:73226595-73226614 None:intergenic 30.0%
! AATTTTGCAGCAAAAGACTT+AGG - Chr8:73226671-73226690 None:intergenic 30.0%
! GTGGCTTGTATATAAATGTT+TGG + Chr8:73225384-73225403 MsG0880046420.01.T01:five_prime_UTR 30.0%
ATATGGTAATCCAAGAGCAA+AGG - Chr8:73226905-73226924 None:intergenic 35.0%
ATCCATGTGATTGATAAGCA+TGG - Chr8:73225724-73225743 None:intergenic 35.0%
CCAAATATATCCTTTGCTCT+TGG + Chr8:73226892-73226911 MsG0880046420.01.T01:intron 35.0%
CCAAGAGCAAAGGATATATT+TGG - Chr8:73226895-73226914 None:intergenic 35.0%
GCTATGAATGAAATCAATGC+TGG + Chr8:73226417-73226436 MsG0880046420.01.T01:CDS 35.0%
TAACAAACCAACCTTTGTCT+TGG - Chr8:73225662-73225681 None:intergenic 35.0%
TAACTTTGAATCGTCTCAAC+AGG + Chr8:73226320-73226339 MsG0880046420.01.T01:intron 35.0%
TACAAACTTAGCAACACAAG+GGG + Chr8:73226035-73226054 MsG0880046420.01.T01:CDS 35.0%
TATATTTGGCACATAGCACT+CGG - Chr8:73226881-73226900 None:intergenic 35.0%
TCACATGGATACTTTCTCTT+TGG + Chr8:73225734-73225753 MsG0880046420.01.T01:intron 35.0%
TGCAAAAGATGTCATGGATA+TGG + Chr8:73227142-73227161 MsG0880046420.01.T01:CDS 35.0%
TGCAGCAGTGAAAAGAAAAT+GGG + Chr8:73225463-73225482 MsG0880046420.01.T01:exon 35.0%
TGCATGTTTATTGCTAAGCA+GGG - Chr8:73226100-73226119 None:intergenic 35.0%
TGTGATTGATAAGCATGGAA+TGG - Chr8:73225719-73225738 None:intergenic 35.0%
TTCCATGCTTATCAATCACA+TGG + Chr8:73225719-73225738 MsG0880046420.01.T01:intron 35.0%
TTCTATTCCTACTTCGTATG+TGG + Chr8:73227318-73227337 MsG0880046420.01.T01:three_prime_UTR 35.0%
TTGCAGCAGTGAAAAGAAAA+TGG + Chr8:73225462-73225481 MsG0880046420.01.T01:exon 35.0%
TTGCATGTTTATTGCTAAGC+AGG - Chr8:73226101-73226120 None:intergenic 35.0%
TTTACAGATAAGGTGAACTG+AGG + Chr8:73226290-73226309 MsG0880046420.01.T01:intron 35.0%
! GATTTTCAGAGAATGTACCA+GGG + Chr8:73227114-73227133 MsG0880046420.01.T01:CDS 35.0%
! TATGATTAGCTGCAAGAATG+AGG + Chr8:73226946-73226965 MsG0880046420.01.T01:intron 35.0%
!! GTATCATCCAAGTTGAGTTT+TGG - Chr8:73226195-73226214 None:intergenic 35.0%
!! TATACACAGAGTACTGAAAG+TGG - Chr8:73225860-73225879 None:intergenic 35.0%
!! TGTCAAAGTATTGAGTGACA+AGG - Chr8:73227169-73227188 None:intergenic 35.0%
AAGACGTACGGTAAGGAAAA+AGG - Chr8:73226583-73226602 None:intergenic 40.0%
AAGACTTAGGATCAGATGCT+TGG - Chr8:73226658-73226677 None:intergenic 40.0%
AATACTCACTTGTTCTCCGA+TGG + Chr8:73227534-73227553 MsG0880046420.01.T01:three_prime_UTR 40.0%
AATATTGTGGGGACATCTCA+TGG - Chr8:73226458-73226477 None:intergenic 40.0%
AATGAACACAGCAGAAGACT+TGG - Chr8:73227216-73227235 None:intergenic 40.0%
ATGGATACTTTCTCTTTGGC+CGG + Chr8:73225738-73225757 MsG0880046420.01.T01:intron 40.0%
CAAATGTGAGACCAAGACAA+AGG + Chr8:73225648-73225667 MsG0880046420.01.T01:CDS 40.0%
CAGTGTTCCAAAACTCAACT+TGG + Chr8:73226185-73226204 MsG0880046420.01.T01:CDS 40.0%
CATGCAAAATCGGAATGCAA+GGG - Chr8:73225426-73225445 None:intergenic 40.0%
CATGGAATGGCATGAAGATT+TGG - Chr8:73225706-73225725 None:intergenic 40.0%
CTCAAAGAAGCAAACCAAAC+CGG - Chr8:73226710-73226729 None:intergenic 40.0%
CTGAGTCTAAATATCTCGCT+GGG + Chr8:73227033-73227052 MsG0880046420.01.T01:CDS 40.0%
GACAAGTGCAAAAGATGTCA+TGG + Chr8:73227136-73227155 MsG0880046420.01.T01:CDS 40.0%
GCAGCAGTGAAAAGAAAATG+GGG + Chr8:73225464-73225483 MsG0880046420.01.T01:exon 40.0%
TACATGTAAGACGTACGGTA+AGG - Chr8:73226590-73226609 None:intergenic 40.0%
TCATGCAAAATCGGAATGCA+AGG - Chr8:73225427-73225446 None:intergenic 40.0%
TCTAAATATCTCGCTGGGAT+GGG + Chr8:73227038-73227057 MsG0880046420.01.T01:CDS 40.0%
TCTCAAGTGGCTATGAAAGA+AGG + Chr8:73225517-73225536 MsG0880046420.01.T01:CDS 40.0%
TCTTGCAGCTAATCATAGAC+AGG - Chr8:73226943-73226962 None:intergenic 40.0%
TGTGGAAGAAGAACTTGAGA+AGG + Chr8:73226245-73226264 MsG0880046420.01.T01:CDS 40.0%
TTCCTTGGAAAACGAATTGC+TGG + Chr8:73225592-73225611 MsG0880046420.01.T01:CDS 40.0%
TTCTATTCAATACCGTGCCT+TGG + Chr8:73225989-73226008 MsG0880046420.01.T01:CDS 40.0%
! ATTCGTTTTCCAAGGAACCA+TGG - Chr8:73225589-73225608 None:intergenic 40.0%
! GGATTTTCAGAGAATGTACC+AGG + Chr8:73227113-73227132 MsG0880046420.01.T01:CDS 40.0%
! GTGGCTATGAAAGAAGGTTT+TGG + Chr8:73225523-73225542 MsG0880046420.01.T01:CDS 40.0%
!! ATTTGAAAAGGTGCTTCAGC+CGG + Chr8:73225549-73225568 MsG0880046420.01.T01:CDS 40.0%
!! CTTCTTTGAGGTCCAATAGT+TGG + Chr8:73226720-73226739 MsG0880046420.01.T01:intron 40.0%
!! GCAAGTTGATCAATCTCAAG+TGG + Chr8:73225504-73225523 MsG0880046420.01.T01:CDS 40.0%
!!! CAAGTTGAGTTTTGGAACAC+TGG - Chr8:73226187-73226206 None:intergenic 40.0%
!!! TTTTGGAATTGACTCCGGTT+TGG + Chr8:73226693-73226712 MsG0880046420.01.T01:intron 40.0%
ACTCATGAGTTAGAGAACCC+TGG - Chr8:73227295-73227314 None:intergenic 45.0%
ATGTGGTTTATATGGGAGCG+TGG + Chr8:73227335-73227354 MsG0880046420.01.T01:three_prime_UTR 45.0%
CAACAGGCTATGTCAGCTTA+TGG + Chr8:73226336-73226355 MsG0880046420.01.T01:intron 45.0%
CGTACGGTAAGGAAAAAGGT+AGG - Chr8:73226579-73226598 None:intergenic 45.0%
GAGAAACCACGATTCCATGA+AGG + Chr8:73225346-73225365 MsG0880046420.01.T01:five_prime_UTR 45.0%
GCCAGATAAGCATGTGAAGA+AGG + Chr8:73226395-73226414 MsG0880046420.01.T01:CDS 45.0%
GCCTTCTTCACATGCTTATC+TGG - Chr8:73226399-73226418 None:intergenic 45.0%
GCTGAGTCTAAATATCTCGC+TGG + Chr8:73227032-73227051 MsG0880046420.01.T01:CDS 45.0%
GGAGAAGTCCATCACGAATT+TGG - Chr8:73227274-73227293 None:intergenic 45.0%
GGATTGAGAGACAGTGTGAT+TGG + Chr8:73227092-73227111 MsG0880046420.01.T01:CDS 45.0%
GTCTAAATATCTCGCTGGGA+TGG + Chr8:73227037-73227056 MsG0880046420.01.T01:CDS 45.0%
GTCTCTCAATCCATCCACAA+TGG - Chr8:73227084-73227103 None:intergenic 45.0%
GTTGCTAGCCAAATTCGTGA+TGG + Chr8:73227263-73227282 MsG0880046420.01.T01:CDS 45.0%
TAGAAGCCTTCATGGAATCG+TGG - Chr8:73225355-73225374 None:intergenic 45.0%
TCTGCTGTGTTCATTCCACA+TGG + Chr8:73227221-73227240 MsG0880046420.01.T01:CDS 45.0%
TGGATACTTTCTCTTTGGCC+GGG + Chr8:73225739-73225758 MsG0880046420.01.T01:intron 45.0%
TGTGAGACCAAGACAAAGGT+TGG + Chr8:73225652-73225671 MsG0880046420.01.T01:intron 45.0%
TTGCAAATAAAGCGAGCCGA+GGG + Chr8:73227005-73227024 MsG0880046420.01.T01:CDS 45.0%
TTGCTGGTCATCTCTCTCTT+CGG + Chr8:73225608-73225627 MsG0880046420.01.T01:CDS 45.0%
! ACATCTTTTGCACTTGTCCC+TGG - Chr8:73227134-73227153 None:intergenic 45.0%
! CTCTCTTCGGGTTCAACAAT+TGG + Chr8:73225621-73225640 MsG0880046420.01.T01:CDS 45.0%
! GACCAGCAATTCGTTTTCCA+AGG - Chr8:73225597-73225616 None:intergenic 45.0%
!! AATTCGTGATGGACTTCTCC+AGG + Chr8:73227274-73227293 MsG0880046420.01.T01:CDS 45.0%
!! ATCGTTTGCCTTGTTTGCCA+AGG - Chr8:73226009-73226028 None:intergenic 45.0%
!! ATTCGTGATGGACTTCTCCA+GGG + Chr8:73227275-73227294 MsG0880046420.01.T01:CDS 45.0%
!! CGGTTTGGTTTGCTTCTTTG+AGG + Chr8:73226708-73226727 MsG0880046420.01.T01:intron 45.0%
!! TTTGAAAAGGTGCTTCAGCC+GGG + Chr8:73225550-73225569 MsG0880046420.01.T01:CDS 45.0%
ATACCGTGCCTTGGCAAACA+AGG + Chr8:73225998-73226017 MsG0880046420.01.T01:CDS 50.0%
CAACGTCAAGCCATTGTGGA+TGG + Chr8:73227071-73227090 MsG0880046420.01.T01:CDS 50.0%
CAAGGAACCATGGCATGCAA+TGG - Chr8:73225579-73225598 None:intergenic 50.0%
CACTTGTTCTCCGATGGTCA+AGG + Chr8:73227540-73227559 MsG0880046420.01.T01:three_prime_UTR 50.0%
CATTGCATGCCATGGTTCCT+TGG + Chr8:73225577-73225596 MsG0880046420.01.T01:CDS 50.0%
CTATGACGAGCCTTGACCAT+CGG - Chr8:73227553-73227572 None:intergenic 50.0%
CTTGCAAATAAAGCGAGCCG+AGG + Chr8:73227004-73227023 MsG0880046420.01.T01:CDS 50.0%
GAACACAGCAGAAGACTTGG+AGG - Chr8:73227213-73227232 None:intergenic 50.0%
GAGGATCGCAGCTAATGAGA+AGG + Chr8:73226965-73226984 MsG0880046420.01.T01:CDS 50.0%
GTGTTCATTCCACATGGACC+TGG + Chr8:73227227-73227246 MsG0880046420.01.T01:CDS 50.0%
TCGTCAACGTCAAGCCATTG+TGG + Chr8:73227067-73227086 MsG0880046420.01.T01:CDS 50.0%
TGCTGGTCATCTCTCTCTTC+GGG + Chr8:73225609-73225628 MsG0880046420.01.T01:CDS 50.0%
TTTAGACTCAGCCTCACCCT+CGG - Chr8:73227024-73227043 None:intergenic 50.0%
!! TTGCCTTGTTTGCCAAGGCA+CGG - Chr8:73226004-73226023 None:intergenic 50.0%
AATAAAGCGAGCCGAGGGTG+AGG + Chr8:73227010-73227029 MsG0880046420.01.T01:CDS 55.0%
CATGGCATGCAATGGCATCC+CGG - Chr8:73225571-73225590 None:intergenic 55.0%
CGAACAGCACCAGGTCCATG+TGG - Chr8:73227239-73227258 None:intergenic 60.0%
CGGGATGCCATTGCATGCCA+TGG + Chr8:73225569-73225588 MsG0880046420.01.T01:CDS 60.0%
GCAACATCGCGAACAGCACC+AGG - Chr8:73227248-73227267 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 73225302 73227592 73225302 ID=MsG0880046420.01;Name=MsG0880046420.01
Chr8 mRNA 73225302 73227592 73225302 ID=MsG0880046420.01.T01;Parent=MsG0880046420.01;Name=MsG0880046420.01.T01;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|5|276|286
Chr8 exon 73225302 73225669 73225302 ID=MsG0880046420.01.T01:exon:11591;Parent=MsG0880046420.01.T01
Chr8 exon 73225963 73226083 73225963 ID=MsG0880046420.01.T01:exon:11592;Parent=MsG0880046420.01.T01
Chr8 exon 73226175 73226266 73226175 ID=MsG0880046420.01.T01:exon:11593;Parent=MsG0880046420.01.T01
Chr8 exon 73226342 73226438 73226342 ID=MsG0880046420.01.T01:exon:11594;Parent=MsG0880046420.01.T01
Chr8 exon 73226955 73227592 73226955 ID=MsG0880046420.01.T01:exon:11595;Parent=MsG0880046420.01.T01
Chr8 five_prime_UTR 73225302 73225480 73225302 ID=MsG0880046420.01.T01:five_prime_utr;Parent=MsG0880046420.01.T01
Chr8 CDS 73225481 73225669 73225481 ID=MsG0880046420.01.T01:cds;Parent=MsG0880046420.01.T01
Chr8 CDS 73225963 73226083 73225963 ID=MsG0880046420.01.T01:cds;Parent=MsG0880046420.01.T01
Chr8 CDS 73226175 73226266 73226175 ID=MsG0880046420.01.T01:cds;Parent=MsG0880046420.01.T01
Chr8 CDS 73226342 73226438 73226342 ID=MsG0880046420.01.T01:cds;Parent=MsG0880046420.01.T01
Chr8 CDS 73226955 73227316 73226955 ID=MsG0880046420.01.T01:cds;Parent=MsG0880046420.01.T01
Chr8 three_prime_UTR 73227317 73227592 73227317 ID=MsG0880046420.01.T01:three_prime_utr;Parent=MsG0880046420.01.T01
Gene Sequence

>MsG0880046420.01.T01

ATGGGGAATCTTGTGTGTTGCGTGCAAGTTGATCAATCTCAAGTGGCTATGAAAGAAGGTTTTGGAAAATTTGAAAAGGTGCTTCAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACGAATTGCTGGTCATCTCTCTCTTCGGGTTCAACAATTGGATATCAAATGTGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCTATTCAATACCGTGCCTTGGCAAACAAGGCAAACGATGCATTTTACAAACTTAGCAACACAAGGGGCCAGATTCAAGCTTATGTTTTTGATGTAATTAGGGCCAGTGTTCCAAAACTCAACTTGGATGATACTTTTGAGCAGAAAAATGAAATTGCAAAAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTACTGATATAGAGCCAGATAAGCATGTGAAGAAGGCTATGAATGAAATCAATGCTGCTGCAAGAATGAGGATCGCAGCTAATGAGAAGGCTGAAGCAGAGAAGATCTTGCAAATAAAGCGAGCCGAGGGTGAGGCTGAGTCTAAATATCTCGCTGGGATGGGTATTGCTCGTCAACGTCAAGCCATTGTGGATGGATTGAGAGACAGTGTGATTGGATTTTCAGAGAATGTACCAGGGACAAGTGCAAAAGATGTCATGGATATGGTCCTTGTCACTCAATACTTTGACACTATGAAAGAAATTGGGGCTGCCTCCAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGCGATGTTGCTAGCCAAATTCGTGATGGACTTCTCCAGGGTTCTCTAACTCATGAGTAG
Protein sequence

>MsG0880046420.01.T01

MGNLVCCVQVDQSQVAMKEGFGKFEKVLQPGCHCMPWFLGKRIAGHLSLRVQQLDIKCETKTKDNVFVNVVASIQYRALANKANDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDDTFEQKNEIAKAVEEELEKAMSAYGYEIVQTLITDIEPDKHVKKAMNEINAAARMRIAANEKAEAEKILQIKRAEGEAESKYLAGMGIARQRQAIVDGLRDSVIGFSENVPGTSAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQGSLTHE*