AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030720.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030720.01.T02 MTR_6g011380 99.650 286 1 0 1 286 1 286 0.0 585
MsG0680030720.01.T02 MTR_8g469160 82.394 284 50 0 1 284 1 284 2.45e-179 495
MsG0680030720.01.T02 MTR_4g107810 84.561 285 44 0 1 285 1 285 8.73e-175 484
MsG0680030720.01.T02 MTR_4g107760 84.561 285 44 0 1 285 1 285 8.73e-175 484
MsG0680030720.01.T02 MTR_4g107810 84.561 285 44 0 1 285 61 345 1.16e-173 483
MsG0680030720.01.T02 MTR_4g107830 78.788 297 48 1 1 282 1 297 3.79e-172 478
MsG0680030720.01.T02 MTR_4g107720 83.333 282 47 0 1 282 1 282 9.33e-171 474
MsG0680030720.01.T02 MTR_4g107730 77.465 284 58 2 1 282 1 280 6.26e-156 436
MsG0680030720.01.T02 MTR_6g460470 57.447 282 120 0 5 286 7 288 3.73e-115 333
MsG0680030720.01.T02 MTR_4g107700 88.889 81 9 0 202 282 6 86 1.83e-46 151
MsG0680030720.01.T02 MTR_6g060500 50.769 65 19 1 161 212 1 65 4.80e-11 60.1
MsG0680030720.01.T01 MTR_6g011380 99.650 286 1 0 1 286 1 286 0.0 585
MsG0680030720.01.T01 MTR_8g469160 82.394 284 50 0 1 284 1 284 2.45e-179 495
MsG0680030720.01.T01 MTR_4g107810 84.561 285 44 0 1 285 1 285 8.73e-175 484
MsG0680030720.01.T01 MTR_4g107760 84.561 285 44 0 1 285 1 285 8.73e-175 484
MsG0680030720.01.T01 MTR_4g107810 84.561 285 44 0 1 285 61 345 1.16e-173 483
MsG0680030720.01.T01 MTR_4g107830 78.788 297 48 1 1 282 1 297 3.79e-172 478
MsG0680030720.01.T01 MTR_4g107720 83.333 282 47 0 1 282 1 282 9.33e-171 474
MsG0680030720.01.T01 MTR_4g107730 77.465 284 58 2 1 282 1 280 6.26e-156 436
MsG0680030720.01.T01 MTR_6g460470 57.447 282 120 0 5 286 7 288 3.73e-115 333
MsG0680030720.01.T01 MTR_4g107700 88.889 81 9 0 202 282 6 86 1.83e-46 151
MsG0680030720.01.T01 MTR_6g060500 50.769 65 19 1 161 212 1 65 4.80e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030720.01.T02 AT5G62740 87.413 286 36 0 1 286 1 286 0.0 515
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T02 AT3G01290 75.439 285 70 0 1 285 1 285 4.60e-162 452
MsG0680030720.01.T02 AT5G51570 58.214 280 115 1 6 285 10 287 8.56e-122 350
MsG0680030720.01.T01 AT5G62740 87.413 286 36 0 1 286 1 286 0.0 515
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT1G69840 86.268 284 39 0 1 284 1 284 0.0 500
MsG0680030720.01.T01 AT3G01290 75.439 285 70 0 1 285 1 285 4.60e-162 452
MsG0680030720.01.T01 AT5G51570 58.214 280 115 1 6 285 10 287 8.56e-122 350

Find 31 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAGTCCGGACAGATATT+TGG 0.265153 6:-7936234 None:intergenic
ACTTCTTTCGTGTATATATA+GGG 0.279438 6:+7932479 MsG0680030720.01.T01:five_prime_UTR
TACTTCTTTCGTGTATATAT+AGG 0.288182 6:+7932478 None:intergenic
TGCAAACTTATAAGTGCTTT+TGG 0.312631 6:+7936499 MsG0680030720.01.T01:exon
GACATCTTTAGCAGTTGTTC+CGG 0.325268 6:-7936327 None:intergenic
GGATGCACCGATTTCCTTCA+TGG 0.358553 6:-7936384 None:intergenic
TTCTGCTTCAGCCTTCTCAT+TGG 0.381980 6:-7936171 None:intergenic
ACATCTTTAGCAGTTGTTCC+GGG 0.418421 6:-7936326 None:intergenic
ATTAGAGATGGTCTTCTTCA+AGG 0.428122 6:+7936470 MsG0680030720.01.T01:CDS
TCCAAATATCTGTCCGGACT+TGG 0.435262 6:+7936233 MsG0680030720.01.T01:CDS
TTTGACACCATGAAGGAAAT+CGG 0.479073 6:+7936377 MsG0680030720.01.T01:CDS
GTGTTCATTCCACATGGTCC+TGG 0.494595 6:+7936422 MsG0680030720.01.T01:CDS
TATCAATAGCTGCAAGAATG+AGG 0.535939 6:+7936141 MsG0680030720.01.T01:intron
CAACGTCAAGCTATTGTTGA+CGG 0.536520 6:+7936266 MsG0680030720.01.T01:CDS
TTGACGAGCTATACCAAGTC+CGG 0.553142 6:-7936246 None:intergenic
GCATTCTCAGAGAATGTCCC+CGG 0.553984 6:+7936308 MsG0680030720.01.T01:CDS
GCAGAGTCCAAATATCTGTC+CGG 0.557286 6:+7936227 MsG0680030720.01.T01:CDS
AATAGCTGCAAGAATGAGGT+TGG 0.565001 6:+7936145 MsG0680030720.01.T01:intron
AACAACTGCTAAAGATGTCA+TGG 0.578481 6:+7936331 MsG0680030720.01.T01:CDS
TTGCAGATCAAGAAAGCTGA+AGG 0.578517 6:+7936200 MsG0680030720.01.T01:CDS
GCAATGTCTCTGACAGCACC+AGG 0.581198 6:-7936440 None:intergenic
TTAATTAATTCACATGTTGG+TGG 0.581365 6:-7932517 None:intergenic
CATCTTTAGCAGTTGTTCCG+GGG 0.592739 6:-7936325 None:intergenic
TCAATACTTTGACACCATGA+AGG 0.595992 6:+7936370 MsG0680030720.01.T01:CDS
TCATCTGTGTTCATTCCACA+TGG 0.597536 6:+7936416 MsG0680030720.01.T01:CDS
TCTCTCTAGCTACAACTCAA+AGG 0.600640 6:+7932583 MsG0680030720.01.T01:five_prime_UTR
AGATGTCATGGACATGGTGT+TGG 0.600992 6:+7936343 MsG0680030720.01.T01:CDS
ATTGCTGTGCAGATTAGAGA+TGG 0.623952 6:+7936458 MsG0680030720.01.T01:CDS
GAGGTTGGCTGCCAATGAGA+AGG 0.636508 6:+7936160 MsG0680030720.01.T01:CDS
CTGACAGCACCAGGACCATG+TGG 0.682921 6:-7936431 None:intergenic
TGCTAAAGATGTCATGGACA+TGG 0.694161 6:+7936337 MsG0680030720.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAATTAAAATTTTAATTC+AGG + Chr6:7933340-7933359 MsG0680030720.01.T01:intron 10.0%
!! AATAAATGCAAAATATCATA+AGG - Chr6:7934944-7934963 None:intergenic 15.0%
!! AATATAAGTATAAAAATGCA+AGG - Chr6:7936576-7936595 None:intergenic 15.0%
!! GCAAAAAAACAAAATAATTT+AGG + Chr6:7935598-7935617 MsG0680030720.01.T01:intron 15.0%
!!! ATTTTAATTAATTCACATGT+TGG - Chr6:7932523-7932542 None:intergenic 15.0%
!!! TACACTTTCTTTTATAAAAT+AGG - Chr6:7936716-7936735 None:intergenic 15.0%
!!! TCAGTGTTTTTATATTAAAA+GGG + Chr6:7932681-7932700 MsG0680030720.01.T01:intron 15.0%
!!! TTATTGAAACTGATTTTTTT+AGG + Chr6:7933203-7933222 MsG0680030720.01.T01:intron 15.0%
!!! TTCAGTGTTTTTATATTAAA+AGG + Chr6:7932680-7932699 MsG0680030720.01.T01:intron 15.0%
!!! TTTTTATGTTTTTTTGTTTG+TGG + Chr6:7932803-7932822 MsG0680030720.01.T01:intron 15.0%
!! AAAACAGCTTATAGTTTATA+TGG + Chr6:7933502-7933521 MsG0680030720.01.T01:intron 20.0%
!! AAAAGTAAAAAGTTTGTGTT+AGG + Chr6:7933006-7933025 MsG0680030720.01.T01:intron 20.0%
!! AAGCTATCTTAAATAACATA+AGG - Chr6:7933479-7933498 None:intergenic 20.0%
!! AGCTATCTTAAATAACATAA+GGG - Chr6:7933478-7933497 None:intergenic 20.0%
!! ATTAAGTTTAAACAGATTGA+TGG + Chr6:7933729-7933748 MsG0680030720.01.T01:intron 20.0%
!! CACACAAAAAATAACTAAAA+AGG - Chr6:7936061-7936080 None:intergenic 20.0%
!! GAGTTTATAAAAACAACTTA+TGG + Chr6:7935829-7935848 MsG0680030720.01.T01:intron 20.0%
!! TATAACATCTAAACACATTT+AGG - Chr6:7935668-7935687 None:intergenic 20.0%
!! TCTTAATCTTGAAGTAAAAA+CGG - Chr6:7934435-7934454 None:intergenic 20.0%
!! TCTTAATCTTGAAGTAAAAA+TGG - Chr6:7934435-7934454 None:intergenic 20.0%
!!! ATTCATATTTTTCTGTTTCA+TGG + Chr6:7932854-7932873 MsG0680030720.01.T01:intron 20.0%
!!! ATTGATAATATATTTGCTAC+TGG + Chr6:7934258-7934277 MsG0680030720.01.T01:intron 20.0%
!!! ATTGTTTCTTTTTGTTTTTC+TGG + Chr6:7932745-7932764 MsG0680030720.01.T01:intron 20.0%
!!! CAGTGTTTTTATATTAAAAG+GGG + Chr6:7932682-7932701 MsG0680030720.01.T01:intron 20.0%
!!! GAGTTTTGTAACTAAAATTT+GGG + Chr6:7932769-7932788 MsG0680030720.01.T01:intron 20.0%
!!! GCATTTATTTTCAGTTATAA+GGG + Chr6:7934955-7934974 MsG0680030720.01.T01:intron 20.0%
!!! GGTTATTTAGAGTTTATTTA+CGG + Chr6:7933376-7933395 MsG0680030720.01.T01:intron 20.0%
!!! GTCTTGATTACTTTTATTTT+CGG + Chr6:7934370-7934389 MsG0680030720.01.T01:intron 20.0%
!!! GTTATTTAGAGTTTATTTAC+GGG + Chr6:7933377-7933396 MsG0680030720.01.T01:intron 20.0%
!!! TGAGTTTTGTAACTAAAATT+TGG + Chr6:7932768-7932787 MsG0680030720.01.T01:intron 20.0%
!!! TGCATTTATTTTCAGTTATA+AGG + Chr6:7934954-7934973 MsG0680030720.01.T01:intron 20.0%
!!! TTCTGATCATTTTTTTACAA+CGG + Chr6:7936115-7936134 MsG0680030720.01.T01:intron 20.0%
!!! TTTTCATGAATATTTGATTG+TGG + Chr6:7936689-7936708 MsG0680030720.01.T01:three_prime_UTR 20.0%
! AACTAATAGTTTGGATACAT+TGG + Chr6:7933318-7933337 MsG0680030720.01.T01:intron 25.0%
! AATAAGCTGAAAATAGCAAA+TGG - Chr6:7935860-7935879 None:intergenic 25.0%
! AATTAAGTAACAGAATGAAG+CGG - Chr6:7934739-7934758 None:intergenic 25.0%
! ACTTCTTTCGTGTATATATA+GGG + Chr6:7932479-7932498 MsG0680030720.01.T01:five_prime_UTR 25.0%
! AGCAACTAAATTATCAATCA+TGG - Chr6:7934908-7934927 None:intergenic 25.0%
! ATAAGCTGAAAATAGCAAAT+GGG - Chr6:7935859-7935878 None:intergenic 25.0%
! ATGAAATCATAGAAAATGTC+AGG + Chr6:7934764-7934783 MsG0680030720.01.T01:intron 25.0%
! ATTAAGTTCTACGTAATTTG+AGG + Chr6:7934302-7934321 MsG0680030720.01.T01:intron 25.0%
! ATTTGAATGACCATAGTAAT+TGG + Chr6:7936085-7936104 MsG0680030720.01.T01:intron 25.0%
! CAACATAACATAAAAACTCT+AGG + Chr6:7935718-7935737 MsG0680030720.01.T01:intron 25.0%
! GAGAAAATACAAGTATTTGA+AGG + Chr6:7933100-7933119 MsG0680030720.01.T01:intron 25.0%
! TACCATCAAAAACATATGAT+TGG - Chr6:7934701-7934720 None:intergenic 25.0%
! TGAAATCATAGAAAATGTCA+GGG + Chr6:7934765-7934784 MsG0680030720.01.T01:intron 25.0%
! TGTAGTTATGAATGTTTGAT+TGG + Chr6:7932915-7932934 MsG0680030720.01.T01:intron 25.0%
! TTAAAAGTTATATGACATGC+AGG - Chr6:7933596-7933615 None:intergenic 25.0%
! TTAATTAATTCACATGTTGG+TGG - Chr6:7932520-7932539 None:intergenic 25.0%
! TTGTACTAAATAGTGTATCA+CGG - Chr6:7935388-7935407 None:intergenic 25.0%
! TTTGAATGACCATAGTAATT+GGG + Chr6:7936086-7936105 MsG0680030720.01.T01:intron 25.0%
!! ATAAAACATTTTGCTTAGTG+TGG + Chr6:7935293-7935312 MsG0680030720.01.T01:intron 25.0%
!! TAATTCAACCGTAATGTTTT+AGG + Chr6:7935149-7935168 MsG0680030720.01.T01:intron 25.0%
!! TTTTTCTGTTTCATGGTTTA+AGG + Chr6:7932861-7932880 MsG0680030720.01.T01:intron 25.0%
!!! AAACTGATTTTTTTAGGTGT+TGG + Chr6:7933209-7933228 MsG0680030720.01.T01:intron 25.0%
!!! AAGCTTTTAAGATAAACTTG+TGG + Chr6:7933628-7933647 MsG0680030720.01.T01:intron 25.0%
!!! ATCCAATCATATGTTTTTGA+TGG + Chr6:7934696-7934715 MsG0680030720.01.T01:CDS 25.0%
!!! ATGGTTTAAGGTTGTTTTTT+CGG + Chr6:7932873-7932892 MsG0680030720.01.T01:intron 25.0%
!!! ATTCTTGTTTTTCTGTTTCT+TGG + Chr6:7932940-7932959 MsG0680030720.01.T01:intron 25.0%
!!! TTTTTTTGTTTGTGGTTTTG+TGG + Chr6:7932811-7932830 MsG0680030720.01.T01:intron 25.0%
AAGACAGAAGTTAAAGATGT+AGG - Chr6:7934355-7934374 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - Chr6:7933455-7933474 None:intergenic 30.0%
ACAACTTAATCAAGTGCTTA+TGG - Chr6:7936006-7936025 None:intergenic 30.0%
ATAACGATGTAACACATCAT+CGG - Chr6:7934813-7934832 None:intergenic 30.0%
GCTTATTTGATCTTATCTAC+TGG + Chr6:7935776-7935795 MsG0680030720.01.T01:intron 30.0%
GTTGAATTAACGAGTTAATG+AGG - Chr6:7935138-7935157 None:intergenic 30.0%
TATTTGATCTTATCTACTGG+TGG + Chr6:7935779-7935798 MsG0680030720.01.T01:intron 30.0%
TTAGTGTAAAGATGTTCACA+CGG - Chr6:7934869-7934888 None:intergenic 30.0%
TTGAATGACCATAGTAATTG+GGG + Chr6:7936087-7936106 MsG0680030720.01.T01:intron 30.0%
! AAAGTAACAGTTTTCCAACA+TGG + Chr6:7934180-7934199 MsG0680030720.01.T01:intron 30.0%
! AAGCATGTATTTCAGTTTTC+AGG + Chr6:7935576-7935595 MsG0680030720.01.T01:intron 30.0%
! CTGTTGTGAACTTGTTTATT+AGG + Chr6:7934575-7934594 MsG0680030720.01.T01:intron 30.0%
! GGAAATCAGTTTGTCATTTA+TGG + Chr6:7933649-7933668 MsG0680030720.01.T01:intron 30.0%
! TGCAAACTTATAAGTGCTTT+TGG + Chr6:7936499-7936518 MsG0680030720.01.T01:exon 30.0%
! TTGTGGAAAATAGTGTTGTT+AGG - Chr6:7935457-7935476 None:intergenic 30.0%
!! AAACAAAGTGTTGTCAATTG+CGG - Chr6:7935481-7935500 None:intergenic 30.0%
!! AAGTTGTTTTCATAAGCTTC+TGG - Chr6:7935895-7935914 None:intergenic 30.0%
!! CGTAATTTGAGGTTGAATTT+TGG + Chr6:7934313-7934332 MsG0680030720.01.T01:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + Chr6:7935403-7935422 MsG0680030720.01.T01:intron 30.0%
!! TATGTTTTTGATGGTATGTG+TGG + Chr6:7934705-7934724 MsG0680030720.01.T01:intron 30.0%
!! TGTTTTTGTGTTTGGTTTCT+GGG + Chr6:7932711-7932730 MsG0680030720.01.T01:intron 30.0%
!! TTGATTTGTTTCCCTTTACT+TGG + Chr6:7933289-7933308 MsG0680030720.01.T01:intron 30.0%
!!! ACAACACTTTGTTTTTGTGT+TGG + Chr6:7935487-7935506 MsG0680030720.01.T01:intron 30.0%
!!! GGTTATTTTGATCGTTGAAA+TGG + Chr6:7934279-7934298 MsG0680030720.01.T01:intron 30.0%
!!! GGTTGTTTTGTTTTTGTGTT+TGG + Chr6:7932703-7932722 MsG0680030720.01.T01:intron 30.0%
!!! TGGAAAATTTGCTGATGTTT+TGG + Chr6:7933885-7933904 MsG0680030720.01.T01:CDS 30.0%
!!! TTGTTTTTGTGTTTGGTTTC+TGG + Chr6:7932710-7932729 MsG0680030720.01.T01:intron 30.0%
AACAACTGCTAAAGATGTCA+TGG + Chr6:7936331-7936350 MsG0680030720.01.T01:CDS 35.0%
ATAGCATCATGAAGCAGAAT+AGG - Chr6:7934042-7934061 None:intergenic 35.0%
ATTAGAGATGGTCTTCTTCA+AGG + Chr6:7936470-7936489 MsG0680030720.01.T01:CDS 35.0%
ATTTGATTATGACCTGTTGC+TGG + Chr6:7934545-7934564 MsG0680030720.01.T01:intron 35.0%
ATTTGTTTCCCTTTACTTGG+AGG + Chr6:7933292-7933311 MsG0680030720.01.T01:intron 35.0%
CAATATCAACAATGAGAGTC+TGG - Chr6:7935203-7935222 None:intergenic 35.0%
CAGGTCATAATCAAATGCAT+AGG - Chr6:7934541-7934560 None:intergenic 35.0%
CAGTGTTTCAATTTCTGTCA+TGG + Chr6:7935626-7935645 MsG0680030720.01.T01:intron 35.0%
GAATACAACCCCAATTACTA+TGG - Chr6:7936098-7936117 None:intergenic 35.0%
GGATCTTTCTTATCACTTCT+AGG + Chr6:7935739-7935758 MsG0680030720.01.T01:intron 35.0%
TAGTGTAAAGATGTTCACAC+GGG - Chr6:7934868-7934887 None:intergenic 35.0%
TAGTTTCTCCTCCAAGTAAA+GGG - Chr6:7933303-7933322 None:intergenic 35.0%
TATCAATAGCTGCAAGAATG+AGG + Chr6:7936141-7936160 MsG0680030720.01.T01:intron 35.0%
TCAATACTTTGACACCATGA+AGG + Chr6:7936370-7936389 MsG0680030720.01.T01:CDS 35.0%
TGACATCGCCTAAAACATTA+CGG - Chr6:7935160-7935179 None:intergenic 35.0%
TGGAGGAGAAACTAATAGTT+TGG + Chr6:7933309-7933328 MsG0680030720.01.T01:intron 35.0%
TTAAACCTGGGCTTACTTAA+CGG + Chr6:7934503-7934522 MsG0680030720.01.T01:intron 35.0%
TTAGTTTCTCCTCCAAGTAA+AGG - Chr6:7933304-7933323 None:intergenic 35.0%
TTTGACACCATGAAGGAAAT+CGG + Chr6:7936377-7936396 MsG0680030720.01.T01:CDS 35.0%
! AAACACTTGTGAGACTGTTT+TGG + Chr6:7935805-7935824 MsG0680030720.01.T01:intron 35.0%
! AATTCAGGGCTTGTTTGTAT+TGG + Chr6:7933355-7933374 MsG0680030720.01.T01:intron 35.0%
! GAACACAGATGAAGATTTTG+AGG - Chr6:7936408-7936427 None:intergenic 35.0%
! TTTTAGGCGATGTCAATGTA+CGG + Chr6:7935165-7935184 MsG0680030720.01.T01:intron 35.0%
!! CGGTTTGTTAGAAGTGAAAA+AGG - Chr6:7934415-7934434 None:intergenic 35.0%
!!! GTTTTTGTGTTGGTCTTGAA+TGG + Chr6:7935497-7935516 MsG0680030720.01.T01:intron 35.0%
AATAGCTGCAAGAATGAGGT+TGG + Chr6:7936145-7936164 MsG0680030720.01.T01:intron 40.0%
ACAGCATCCAATTCCAACTT+CGG - Chr6:7934989-7935008 None:intergenic 40.0%
ACATCTTTAGCAGTTGTTCC+GGG - Chr6:7936329-7936348 None:intergenic 40.0%
ACTGATACGTACACGAAACA+CGG + Chr6:7933036-7933055 MsG0680030720.01.T01:intron 40.0%
ATATGATTGGATCTGTTCCC+TGG - Chr6:7934688-7934707 None:intergenic 40.0%
ATTGCTGTGCAGATTAGAGA+TGG + Chr6:7936458-7936477 MsG0680030720.01.T01:CDS 40.0%
CAACGTCAAGCTATTGTTGA+CGG + Chr6:7936266-7936285 MsG0680030720.01.T01:CDS 40.0%
CCATTGCAGGATTGAAAGAT+GGG + Chr6:7933805-7933824 MsG0680030720.01.T01:intron 40.0%
GAAATGCGAGACGAAAACTA+AGG + Chr6:7933990-7934009 MsG0680030720.01.T01:CDS 40.0%
GACATCTTTAGCAGTTGTTC+CGG - Chr6:7936330-7936349 None:intergenic 40.0%
GAGTTGTGATATTCCATTGC+AGG + Chr6:7933792-7933811 MsG0680030720.01.T01:intron 40.0%
GCAGAAGAATGACATTGCAA+AGG + Chr6:7935015-7935034 MsG0680030720.01.T01:CDS 40.0%
GCAGAATAGGCGGAAAAAAT+AGG - Chr6:7934029-7934048 None:intergenic 40.0%
GCTCTCTTGACATTAACATC+AGG - Chr6:7935228-7935247 None:intergenic 40.0%
GGATAATGTCTTCGTGAATG+TGG + Chr6:7934596-7934615 MsG0680030720.01.T01:intron 40.0%
GGCGGAAAAAATAGGAAGAA+TGG - Chr6:7934021-7934040 None:intergenic 40.0%
GTGTTAAAAACCGACGTAAG+TGG - Chr6:7933129-7933148 None:intergenic 40.0%
GTTGCTATCAAAGAGCAGTT+TGG + Chr6:7933865-7933884 MsG0680030720.01.T01:CDS 40.0%
TAAACCTGGGCTTACTTAAC+GGG + Chr6:7934504-7934523 MsG0680030720.01.T01:intron 40.0%
TCATCTGTGTTCATTCCACA+TGG + Chr6:7936416-7936435 MsG0680030720.01.T01:CDS 40.0%
TCCATTGCAGGATTGAAAGA+TGG + Chr6:7933804-7933823 MsG0680030720.01.T01:intron 40.0%
TCTCTCTAGCTACAACTCAA+AGG + Chr6:7932583-7932602 MsG0680030720.01.T01:five_prime_UTR 40.0%
TGCTAAAGATGTCATGGACA+TGG + Chr6:7936337-7936356 MsG0680030720.01.T01:CDS 40.0%
TGGTCAAATAGCAGCTATAG+TGG + Chr6:7935313-7935332 MsG0680030720.01.T01:intron 40.0%
TTGAAGGTAACCACTTACGT+CGG + Chr6:7933116-7933135 MsG0680030720.01.T01:intron 40.0%
TTGCAGATCAAGAAAGCTGA+AGG + Chr6:7936200-7936219 MsG0680030720.01.T01:CDS 40.0%
! AAGCGTCTGATGCCTTTTAT+AGG + Chr6:7934652-7934671 MsG0680030720.01.T01:CDS 40.0%
! AGAAAGCATGCTGTTAAACC+TGG + Chr6:7934490-7934509 MsG0680030720.01.T01:intron 40.0%
! ATAAGCTTCTGGAGAGCTTA+TGG - Chr6:7935884-7935903 None:intergenic 40.0%
! CTGCTCTTTGATAGCAACAT+TGG - Chr6:7933863-7933882 None:intergenic 40.0%
! GAAAGCATGCTGTTAAACCT+GGG + Chr6:7934491-7934510 MsG0680030720.01.T01:intron 40.0%
! GACACATTGATAGTCCATGT+TGG - Chr6:7934197-7934216 None:intergenic 40.0%
! TTGTCAAATAGCGGCTTTTG+TGG + Chr6:7935412-7935431 MsG0680030720.01.T01:intron 40.0%
!!! CTTACGTCGGTTTTTAACAC+CGG + Chr6:7933129-7933148 MsG0680030720.01.T01:intron 40.0%
!!! TTGTGGTTTTGTGGCTATGA+AGG + Chr6:7932820-7932839 MsG0680030720.01.T01:intron 40.0%
!!! TTTGCTGATGTTTTGGAACC+TGG + Chr6:7933892-7933911 MsG0680030720.01.T01:CDS 40.0%
AAACCTGGGCTTACTTAACG+GGG + Chr6:7934505-7934524 MsG0680030720.01.T01:intron 45.0%
AACAGTCAGATTCCAGCAAC+AGG - Chr6:7934560-7934579 None:intergenic 45.0%
ACCAAGTCCGGACAGATATT+TGG - Chr6:7936237-7936256 None:intergenic 45.0%
AGATGTCATGGACATGGTGT+TGG + Chr6:7936343-7936362 MsG0680030720.01.T01:CDS 45.0%
AGTGTGTCAGTGTCGTGTTA+GGG - Chr6:7933069-7933088 None:intergenic 45.0%
CATCTTTAGCAGTTGTTCCG+GGG - Chr6:7936328-7936347 None:intergenic 45.0%
CATTGCAAAGGCTGTTGAAG+AGG + Chr6:7935027-7935046 MsG0680030720.01.T01:CDS 45.0%
CCCATCTTTCAATCCTGCAA+TGG - Chr6:7933808-7933827 None:intergenic 45.0%
GCAATGAACGAGATCAATGC+AGG + Chr6:7935246-7935265 MsG0680030720.01.T01:CDS 45.0%
GCAGAGTCCAAATATCTGTC+CGG + Chr6:7936227-7936246 MsG0680030720.01.T01:CDS 45.0%
GCATCATGAAGCAGAATAGG+CGG - Chr6:7934039-7934058 None:intergenic 45.0%
TCCAAATATCTGTCCGGACT+TGG + Chr6:7936233-7936252 MsG0680030720.01.T01:CDS 45.0%
TGAAAGATGGGTCAAGCACT+AGG + Chr6:7933817-7933836 MsG0680030720.01.T01:intron 45.0%
TGTCATGGTAGTCTGTGTTC+TGG + Chr6:7935641-7935660 MsG0680030720.01.T01:intron 45.0%
TGTTGAAGAGGAGCTTGAGA+AGG + Chr6:7935039-7935058 MsG0680030720.01.T01:CDS 45.0%
TTATAGGCTCACCAACACCA+GGG + Chr6:7934668-7934687 MsG0680030720.01.T01:CDS 45.0%
TTCTGCTTCAGCCTTCTCAT+TGG - Chr6:7936174-7936193 None:intergenic 45.0%
TTGACGAGCTATACCAAGTC+CGG - Chr6:7936249-7936268 None:intergenic 45.0%
TTTATAGGCTCACCAACACC+AGG + Chr6:7934667-7934686 MsG0680030720.01.T01:CDS 45.0%
TTTGTGGCACTATAGCGTAG+TGG + Chr6:7935428-7935447 MsG0680030720.01.T01:intron 45.0%
! ATCAAGTTGCTGGACACGAA+GGG - Chr6:7933968-7933987 None:intergenic 45.0%
! CGCATTTCACATCAAGTTGC+TGG - Chr6:7933978-7933997 None:intergenic 45.0%
! GTGTTGTCAATTGCGGATTG+TGG - Chr6:7935474-7935493 None:intergenic 45.0%
!! GGTGTTGGTGAGCCTATAAA+AGG - Chr6:7934667-7934686 None:intergenic 45.0%
!!! AAAATTAAAATTTTAATTCA+GGG + Chr6:7933341-7933360 MsG0680030720.01.T01:intron 5.0%
!!! ATTTTTTATTTTATTTTGTT+TGG + Chr6:7932623-7932642 MsG0680030720.01.T01:intron 5.0%
ACCCTAACACTTCGTGTGTC+CGG - Chr6:7933151-7933170 None:intergenic 50.0%
ATCTGGTAACCGAGACACCA+AGG - Chr6:7933931-7933950 None:intergenic 50.0%
ATCTGTACAATACCGCGCTG+TGG + Chr6:7934623-7934642 MsG0680030720.01.T01:CDS 50.0%
CAAGGCAGACAATGACATCC+AGG - Chr6:7933913-7933932 None:intergenic 50.0%
CAATTCCAACTTCGGCACAC+TGG - Chr6:7934981-7935000 None:intergenic 50.0%
CAGTGTGCCGAAGTTGGAAT+TGG + Chr6:7934979-7934998 MsG0680030720.01.T01:CDS 50.0%
CAGTGTGTCAGTGTCGTGTT+AGG - Chr6:7933070-7933089 None:intergenic 50.0%
CTAACACGACACTGACACAC+TGG + Chr6:7933068-7933087 MsG0680030720.01.T01:intron 50.0%
CTGGATGTCATTGTCTGCCT+TGG + Chr6:7933911-7933930 MsG0680030720.01.T01:CDS 50.0%
GCATTCTCAGAGAATGTCCC+CGG + Chr6:7936308-7936327 MsG0680030720.01.T01:CDS 50.0%
GTGTTCATTCCACATGGTCC+TGG + Chr6:7936422-7936441 MsG0680030720.01.T01:CDS 50.0%
TCGGTTACCAGATTGCTGGT+GGG + Chr6:7933938-7933957 MsG0680030720.01.T01:CDS 50.0%
TGTCTCGGTTACCAGATTGC+TGG + Chr6:7933934-7933953 MsG0680030720.01.T01:CDS 50.0%
TTGGATCTGTTCCCTGGTGT+TGG - Chr6:7934682-7934701 None:intergenic 50.0%
! ACCGGACACACGAAGTGTTA+GGG + Chr6:7933147-7933166 MsG0680030720.01.T01:intron 50.0%
! CATCAAGTTGCTGGACACGA+AGG - Chr6:7933969-7933988 None:intergenic 50.0%
!! CATTGTCTGCCTTGGTGTCT+CGG + Chr6:7933919-7933938 MsG0680030720.01.T01:CDS 50.0%
!! GGATGCACCGATTTCCTTCA+TGG - Chr6:7936387-7936406 None:intergenic 50.0%
CAACCCCGTTAAGTAAGCCC+AGG - Chr6:7934511-7934530 None:intergenic 55.0%
CTCGGTTACCAGATTGCTGG+TGG + Chr6:7933937-7933956 MsG0680030720.01.T01:CDS 55.0%
GCAATGTCTCTGACAGCACC+AGG - Chr6:7936443-7936462 None:intergenic 55.0%
! CACCGGACACACGAAGTGTT+AGG + Chr6:7933146-7933165 MsG0680030720.01.T01:intron 55.0%
! GAGGTTGGCTGCCAATGAGA+AGG + Chr6:7936160-7936179 MsG0680030720.01.T01:CDS 55.0%
AAGGGCCAGTGTGCCGAAGT+TGG + Chr6:7934973-7934992 MsG0680030720.01.T01:CDS 60.0%
ACGCTTTGTCAGCCACAGCG+CGG - Chr6:7934638-7934657 None:intergenic 60.0%
CTGACAGCACCAGGACCATG+TGG - Chr6:7936434-7936453 None:intergenic 60.0%
GGGACAACCCACCAGCAATC+TGG - Chr6:7933948-7933967 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 7932479 7936749 7932479 ID=MsG0680030720.01;Name=MsG0680030720.01
Chr6 mRNA 7932479 7936749 7932479 ID=MsG0680030720.01.T01;Parent=MsG0680030720.01;Name=MsG0680030720.01.T01;_AED=0.49;_eAED=0.49;_QI=135|1|1|1|0.8|0.66|6|238|286
Chr6 exon 7932479 7932604 7932479 ID=MsG0680030720.01.T01:exon:6912;Parent=MsG0680030720.01.T01
Chr6 exon 7936150 7936749 7936150 ID=MsG0680030720.01.T01:exon:6917;Parent=MsG0680030720.01.T01
Chr6 five_prime_UTR 7932479 7932604 7932479 ID=MsG0680030720.01.T01:five_prime_utr;Parent=MsG0680030720.01.T01
Chr6 five_prime_UTR 7933814 7933822 7933814 ID=MsG0680030720.01.T01:five_prime_utr;Parent=MsG0680030720.01.T01
Chr6 CDS 7933823 7934011 7933823 ID=MsG0680030720.01.T01:cds;Parent=MsG0680030720.01.T01
Chr6 CDS 7934597 7934717 7934597 ID=MsG0680030720.01.T01:cds;Parent=MsG0680030720.01.T01
Chr6 CDS 7934969 7935060 7934969 ID=MsG0680030720.01.T01:cds;Parent=MsG0680030720.01.T01
Chr6 CDS 7935171 7935267 7935171 ID=MsG0680030720.01.T01:cds;Parent=MsG0680030720.01.T01
Chr6 CDS 7936150 7936511 7936150 ID=MsG0680030720.01.T01:cds;Parent=MsG0680030720.01.T01
Chr6 three_prime_UTR 7936512 7936749 7936512 ID=MsG0680030720.01.T01:three_prime_utr;Parent=MsG0680030720.01.T01
Chr6 mRNA 7932659 7936746 7932659 ID=MsG0680030720.01.T02;Parent=MsG0680030720.01;Name=MsG0680030720.01.T02;_AED=0.49;_eAED=0.49;_QI=117|1|1|1|0.8|0.66|6|235|286
Chr6 exon 7932659 7932766 7932659 ID=MsG0680030720.01.T02:exon:6918;Parent=MsG0680030720.01.T02
Chr6 exon 7936150 7936746 7936150 ID=MsG0680030720.01.T02:exon:6919;Parent=MsG0680030720.01.T02
Chr6 five_prime_UTR 7932659 7932766 7932659 ID=MsG0680030720.01.T02:five_prime_utr;Parent=MsG0680030720.01.T02
Chr6 five_prime_UTR 7933814 7933822 7933814 ID=MsG0680030720.01.T02:five_prime_utr;Parent=MsG0680030720.01.T02
Chr6 CDS 7933823 7934011 7933823 ID=MsG0680030720.01.T02:cds;Parent=MsG0680030720.01.T02
Chr6 CDS 7934597 7934717 7934597 ID=MsG0680030720.01.T02:cds;Parent=MsG0680030720.01.T02
Chr6 CDS 7934969 7935060 7934969 ID=MsG0680030720.01.T02:cds;Parent=MsG0680030720.01.T02
Chr6 CDS 7935171 7935267 7935171 ID=MsG0680030720.01.T02:cds;Parent=MsG0680030720.01.T02
Chr6 CDS 7936150 7936511 7936150 ID=MsG0680030720.01.T02:cds;Parent=MsG0680030720.01.T02
Chr6 three_prime_UTR 7936512 7936746 7936512 ID=MsG0680030720.01.T02:three_prime_utr;Parent=MsG0680030720.01.T02
Gene Sequence

>MsG0680030720.01.T02

ATGGGTCAAGCACTAGGATGCGTTCAAGTTGATCAGTCCAATGTTGCTATCAAAGAGCAGTTTGGAAAATTTGCTGATGTTTTGGAACCTGGATGTCATTGTCTGCCTTGGTGTCTCGGTTACCAGATTGCTGGTGGGTTGTCCCTTCGTGTCCAGCAACTTGATGTGAAATGCGAGACGAAAACTAAGGATAATGTCTTCGTGAATGTGGTTGCATCTGTACAATACCGCGCTGTGGCTGACAAAGCGTCTGATGCCTTTTATAGGCTCACCAACACCAGGGAACAGATCCAATCATATGTTTTTGATGTTATAAGGGCCAGTGTGCCGAAGTTGGAATTGGATGCTGTATTTGAGCAGAAGAATGACATTGCAAAGGCTGTTGAAGAGGAGCTTGAGAAGGCGATGTCAATGTACGGATATCAGATAGTCCAGACTCTCATTGTTGATATTGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATCAATGCAGCTGCAAGAATGAGGTTGGCTGCCAATGAGAAGGCTGAAGCAGAAAAGATATTGCAGATCAAGAAAGCTGAAGGAGAAGCAGAGTCCAAATATCTGTCCGGACTTGGTATAGCTCGTCAACGTCAAGCTATTGTTGACGGACTGAGAGACAGCGTGCTTGCATTCTCAGAGAATGTCCCCGGAACAACTGCTAAAGATGTCATGGACATGGTGTTGGTGACTCAATACTTTGACACCATGAAGGAAATCGGTGCATCCTCAAAATCTTCATCTGTGTTCATTCCACATGGTCCTGGTGCTGTCAGAGACATTGCTGTGCAGATTAGAGATGGTCTTCTTCAAGGAAATGCTGCAAACTTATAA

>MsG0680030720.01.T01

ATGGGTCAAGCACTAGGATGCGTTCAAGTTGATCAGTCCAATGTTGCTATCAAAGAGCAGTTTGGAAAATTTGCTGATGTTTTGGAACCTGGATGTCATTGTCTGCCTTGGTGTCTCGGTTACCAGATTGCTGGTGGGTTGTCCCTTCGTGTCCAGCAACTTGATGTGAAATGCGAGACGAAAACTAAGGATAATGTCTTCGTGAATGTGGTTGCATCTGTACAATACCGCGCTGTGGCTGACAAAGCGTCTGATGCCTTTTATAGGCTCACCAACACCAGGGAACAGATCCAATCATATGTTTTTGATGTTATAAGGGCCAGTGTGCCGAAGTTGGAATTGGATGCTGTATTTGAGCAGAAGAATGACATTGCAAAGGCTGTTGAAGAGGAGCTTGAGAAGGCGATGTCAATGTACGGATATCAGATAGTCCAGACTCTCATTGTTGATATTGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATCAATGCAGCTGCAAGAATGAGGTTGGCTGCCAATGAGAAGGCTGAAGCAGAAAAGATATTGCAGATCAAGAAAGCTGAAGGAGAAGCAGAGTCCAAATATCTGTCCGGACTTGGTATAGCTCGTCAACGTCAAGCTATTGTTGACGGACTGAGAGACAGCGTGCTTGCATTCTCAGAGAATGTCCCCGGAACAACTGCTAAAGATGTCATGGACATGGTGTTGGTGACTCAATACTTTGACACCATGAAGGAAATCGGTGCATCCTCAAAATCTTCATCTGTGTTCATTCCACATGGTCCTGGTGCTGTCAGAGACATTGCTGTGCAGATTAGAGATGGTCTTCTTCAAGGAAATGCTGCAAACTTATAA
Protein sequence

>MsG0680030720.01.T02

MGQALGCVQVDQSNVAIKEQFGKFADVLEPGCHCLPWCLGYQIAGGLSLRVQQLDVKCETKTKDNVFVNVVASVQYRAVADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAVFEQKNDIAKAVEEELEKAMSMYGYQIVQTLIVDIEPDVNVKRAMNEINAAARMRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDIAVQIRDGLLQGNAANL*

>MsG0680030720.01.T01

MGQALGCVQVDQSNVAIKEQFGKFADVLEPGCHCLPWCLGYQIAGGLSLRVQQLDVKCETKTKDNVFVNVVASVQYRAVADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAVFEQKNDIAKAVEEELEKAMSMYGYQIVQTLIVDIEPDVNVKRAMNEINAAARMRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVRDIAVQIRDGLLQGNAANL*