AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046514.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046514.01.T01 MTR_4g109300 89.254 335 18 2 1 317 1 335 0.0 587
MsG0880046514.01.T01 MTR_4g109300 89.254 335 18 2 1 317 1 335 0.0 587
MsG0880046514.01.T01 MTR_4g109300 81.030 369 18 3 1 317 1 369 0.0 569
MsG0880046514.01.T01 MTR_3g023710 65.192 339 96 4 1 317 1 339 4.47e-159 455
MsG0880046514.01.T01 MTR_3g023700 64.095 337 101 3 1 317 1 337 1.35e-154 443
MsG0880046514.01.T01 MTR_3g023690 63.393 336 104 3 1 317 1 336 1.10e-151 436
MsG0880046514.01.T01 MTR_4g109300 92.632 190 13 1 129 317 1 190 9.60e-124 360
MsG0880046514.01.T01 MTR_5g043710 47.112 329 154 3 9 317 6 334 2.30e-105 317
MsG0880046514.01.T01 MTR_2g451510 43.824 340 161 8 3 317 11 345 3.07e-91 282
MsG0880046514.01.T01 MTR_3g023690 64.767 193 65 2 128 317 56 248 2.12e-85 263
MsG0880046514.01.T01 MTR_4g116070 44.304 316 148 6 25 317 39 349 2.58e-82 258
MsG0880046514.01.T01 MTR_4g116040 49.080 163 81 2 156 317 21 182 5.82e-45 156
MsG0880046514.01.T01 MTR_4g109260 71.795 78 22 0 210 287 59 136 7.83e-35 124
MsG0880046514.01.T01 MTR_8g091920 36.508 126 41 3 155 280 2 88 1.76e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046514.01.T01 AT5G61250 58.457 337 120 3 1 317 1 337 2.94e-144 417
MsG0880046514.01.T01 AT5G61250 58.457 337 120 3 1 317 1 337 2.94e-144 417
MsG0880046514.01.T01 AT5G61250 58.457 337 120 3 1 317 1 337 2.94e-144 417
MsG0880046514.01.T01 AT5G07830 56.891 341 123 5 1 317 1 341 9.10e-141 409
MsG0880046514.01.T01 AT5G34940 43.582 335 166 4 5 317 7 340 1.18e-88 275
MsG0880046514.01.T01 AT5G34940 42.090 335 171 4 5 317 7 340 1.10e-85 263
MsG0880046514.01.T01 AT5G34940 45.631 206 110 2 113 317 1 205 6.35e-54 181
MsG0880046514.01.T01 AT5G34940 40.777 103 59 2 216 317 2 103 2.33e-17 81.3

Find 79 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCCTTGTTTCTCTTCC+TGG 0.115486 8:+74258461 MsG0880046514.01.T01:CDS
CACTCATCATGTATATAATT+TGG 0.131943 8:+74260306 MsG0880046514.01.T01:CDS
GATAAGCTTCTTGAGGTTTC+AGG 0.238177 8:+74260262 MsG0880046514.01.T01:CDS
TGCAGGGCCATGATGACTTT+TGG 0.268128 8:+74259863 MsG0880046514.01.T01:intron
CAAAATTAGTCACACTGTTT+GGG 0.269343 8:+74259910 MsG0880046514.01.T01:CDS
ACAAAATTAGTCACACTGTT+TGG 0.287075 8:+74259909 MsG0880046514.01.T01:CDS
AAGATGAAAGGTGGATTGTT+TGG 0.303097 8:+74259135 MsG0880046514.01.T01:CDS
ACACATTTGTGGATAGCTTT+TGG 0.308106 8:+74260595 MsG0880046514.01.T01:CDS
GGCTGCTTGGGTGGAGAAGC+TGG 0.311042 8:+74260539 MsG0880046514.01.T01:CDS
GAAATTGATTCATGGGAGTT+TGG 0.328046 8:+74259995 MsG0880046514.01.T01:CDS
ATGGTCCTTGGTCGGCTGCT+TGG 0.342909 8:+74260526 MsG0880046514.01.T01:CDS
TGGTCCTTGGTCGGCTGCTT+GGG 0.343954 8:+74260527 MsG0880046514.01.T01:CDS
ATGAAATCATAAGCATTTGT+AGG 0.373227 8:-74259947 None:intergenic
ACTCATCATGTATATAATTT+GGG 0.394197 8:+74260307 MsG0880046514.01.T01:CDS
CTTCTTGAGGTTTCAGGCAC+AGG 0.398220 8:+74260268 MsG0880046514.01.T01:CDS
TCATTTGCGCTACTATTGAT+TGG 0.400129 8:+74258574 MsG0880046514.01.T01:CDS
CCAAGGACCATGTGTTTGAA+TGG 0.403691 8:-74260514 None:intergenic
TGATAGCTCTCAGGCCTTTG+AGG 0.412095 8:+74259034 MsG0880046514.01.T01:intron
CACTGTTTGGGGAGGAGACT+GGG 0.416439 8:+74259922 MsG0880046514.01.T01:CDS
AAGAATACGAAATTGATTCA+TGG 0.442797 8:+74259987 MsG0880046514.01.T01:CDS
ACCAGGAGGTTTCTATCAAA+AGG 0.447090 8:+74260231 MsG0880046514.01.T01:CDS
ACACTGTTTGGGGAGGAGAC+TGG 0.447803 8:+74259921 MsG0880046514.01.T01:CDS
TTGAACTCCGTTCACTTCGA+TGG 0.456238 8:-74258526 None:intergenic
GGTAATGAATTGAGTGGTAA+AGG 0.458190 8:+74260100 MsG0880046514.01.T01:intron
ATCGAAGTGAACGGAGTTCA+AGG 0.459204 8:+74258528 MsG0880046514.01.T01:CDS
CATGTATATAATTTGGGACC+AGG 0.472337 8:+74260313 MsG0880046514.01.T01:CDS
TCCTTGGTCGGCTGCTTGGG+TGG 0.475682 8:+74260530 MsG0880046514.01.T01:CDS
CCATTCAAACACATGGTCCT+TGG 0.480449 8:+74260514 MsG0880046514.01.T01:CDS
TGAAATCATAAGCATTTGTA+GGG 0.485591 8:-74259946 None:intergenic
TGATGTTTCTGACACATTTG+TGG 0.489087 8:+74260584 MsG0880046514.01.T01:CDS
AGAATACGAAATTGATTCAT+GGG 0.492373 8:+74259988 MsG0880046514.01.T01:CDS
TGGGATGCTTACACATGAAA+AGG 0.495260 8:+74259166 MsG0880046514.01.T01:CDS
TTTGGCTTGAATGCACTCCA+TGG 0.503899 8:+74259881 MsG0880046514.01.T01:CDS
TTGGCTTGAATGCACTCCAT+GGG 0.511301 8:+74259882 MsG0880046514.01.T01:CDS
GAGGTTTCTATCAAAAGGAA+TGG 0.511315 8:+74260236 MsG0880046514.01.T01:CDS
TACCTTGTATTGCCTTTGCA+AGG 0.519151 8:-74258872 None:intergenic
GTGTTGATGCTGCACAGTAC+GGG 0.519288 8:+74260134 MsG0880046514.01.T01:CDS
ATGGTTACTTGATAGCTCTC+AGG 0.519664 8:+74259025 MsG0880046514.01.T01:intron
TGTATTGCCTTTGCAAGGAT+AGG 0.525022 8:-74258867 None:intergenic
TCTACCTTGCTTAAGTGCGC+AGG 0.525217 8:-74260465 None:intergenic
TTTGCGCTACTATTGATTGG+TGG 0.527563 8:+74258577 MsG0880046514.01.T01:CDS
CCTTTGAGGATAAGAGTTGG+AGG 0.533950 8:+74259048 MsG0880046514.01.T01:CDS
CAACAATTTCAAAAGATGAA+AGG 0.535454 8:+74259123 MsG0880046514.01.T01:CDS
GCAAGACCGAGTGCTGTATG+AGG 0.545556 8:+74259077 MsG0880046514.01.T01:CDS
ATCCTTGCAAAGGCAATACA+AGG 0.545859 8:+74258870 MsG0880046514.01.T01:CDS
GTCTAATCCTATCCTTGCAA+AGG 0.563157 8:+74258860 MsG0880046514.01.T01:CDS
AGTGTTGATGCTGCACAGTA+CGG 0.569712 8:+74260133 MsG0880046514.01.T01:CDS
TCCACCCAAGCAGCCGACCA+AGG 0.571962 8:-74260531 None:intergenic
AAATCAAACGAAGAGAAACC+AGG 0.578290 8:-74258479 None:intergenic
CCTCCTGGTGCTATAAGTGA+TGG 0.580527 8:-74260217 None:intergenic
TATAAGTGATGGTTTGAACT+TGG 0.581272 8:-74260206 None:intergenic
TATTGTAGTCACACTTCTTG+AGG 0.582117 8:-74258600 None:intergenic
AGGCCTTTGAGGATAAGAGT+TGG 0.586029 8:+74259045 MsG0880046514.01.T01:CDS
TTCCTACCTCATACAGCACT+CGG 0.589704 8:-74259083 None:intergenic
ATTCAAGCCAAAAGTCATCA+TGG 0.593934 8:-74259870 None:intergenic
GAATTGAGTGGTAAAGGCAT+CGG 0.596750 8:+74260106 MsG0880046514.01.T01:CDS
AAAATTAGTCACACTGTTTG+GGG 0.597978 8:+74259911 MsG0880046514.01.T01:CDS
CAATTTCAAAAGATGAAAGG+TGG 0.600121 8:+74259126 MsG0880046514.01.T01:CDS
GCTTGAATGCACTCCATGGG+AGG 0.602432 8:+74259885 MsG0880046514.01.T01:CDS
CATGGTTCCATCGAAGTGAA+CGG 0.605034 8:+74258519 MsG0880046514.01.T01:CDS
CCTCCAACTCTTATCCTCAA+AGG 0.605128 8:-74259048 None:intergenic
TCAAACACATGGTCCTTGGT+CGG 0.613086 8:+74260518 MsG0880046514.01.T01:CDS
CATATAGGTAATGAATTGAG+TGG 0.618353 8:+74260094 MsG0880046514.01.T01:intron
GATGCTTACACATGAAAAGG+TGG 0.621026 8:+74259169 MsG0880046514.01.T01:CDS
ATGGTTTGATAAGCTTCTTG+AGG 0.622444 8:+74260255 MsG0880046514.01.T01:CDS
AGATCCTGCGCACTTAAGCA+AGG 0.625009 8:+74260461 MsG0880046514.01.T01:CDS
AGAAACCAGGAAGAGAAACA+AGG 0.628706 8:-74258466 None:intergenic
TCAACTCAAGATATTGAACA+TGG 0.630831 8:+74258501 MsG0880046514.01.T01:CDS
TCAGAAACCATTCAAACACA+TGG 0.631922 8:+74260507 MsG0880046514.01.T01:CDS
ATTAGTCACACTGTTTGGGG+AGG 0.644368 8:+74259914 MsG0880046514.01.T01:CDS
AAACCATCACTTATAGCACC+AGG 0.645834 8:+74260214 MsG0880046514.01.T01:CDS
CTGGCGGCATTCAACAGTGG+TGG 0.649696 8:+74260558 MsG0880046514.01.T01:CDS
GACCGAGTGCTGTATGAGGT+AGG 0.656808 8:+74259081 MsG0880046514.01.T01:CDS
GGAAGAGAAACAAGGCAAGG+TGG 0.665239 8:-74258458 None:intergenic
CCAGGAAGAGAAACAAGGCA+AGG 0.670315 8:-74258461 None:intergenic
ATGCTTACACATGAAAAGGT+GGG 0.687081 8:+74259170 MsG0880046514.01.T01:CDS
AAGCTGGCGGCATTCAACAG+TGG 0.693965 8:+74260555 MsG0880046514.01.T01:CDS
TGCTTGGGTGGAGAAGCTGG+CGG 0.694982 8:+74260542 MsG0880046514.01.T01:CDS
CCATCACTTATAGCACCAGG+AGG 0.730152 8:+74260217 MsG0880046514.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCATTTTTTCAAAAATAC+AGG + Chr8:74259201-74259220 MsG0880046514.01.T01:CDS 15.0%
!!! ATCATTTTTTCAAAAATACA+GGG + Chr8:74259202-74259221 MsG0880046514.01.T01:CDS 15.0%
!!! TAAATGATTTGTTTTTGTTT+AGG + Chr8:74260408-74260427 MsG0880046514.01.T01:intron 15.0%
!! ACTCATCATGTATATAATTT+GGG + Chr8:74260307-74260326 MsG0880046514.01.T01:CDS 20.0%
!! AGAGTTTGAAAAGTTAAATT+AGG + Chr8:74259296-74259315 MsG0880046514.01.T01:intron 20.0%
!! TGATGTTATTCTTTCAATAA+TGG + Chr8:74259006-74259025 MsG0880046514.01.T01:intron 20.0%
!!! AATTTCGTATTCTTTTGATA+TGG - Chr8:74259981-74260000 None:intergenic 20.0%
!!! TTTAGTTCTTGAAATTGTAA+AGG + Chr8:74259479-74259498 MsG0880046514.01.T01:intron 20.0%
! AACAAATCATTTAAACCTGT+AGG - Chr8:74260401-74260420 None:intergenic 25.0%
! AATGATAACTCAATGTTGAT+TGG + Chr8:74258824-74258843 MsG0880046514.01.T01:intron 25.0%
! ATGAAATCATAAGCATTTGT+AGG - Chr8:74259950-74259969 None:intergenic 25.0%
! CAACAATTTCAAAAGATGAA+AGG + Chr8:74259123-74259142 MsG0880046514.01.T01:CDS 25.0%
! CACTCATCATGTATATAATT+TGG + Chr8:74260306-74260325 MsG0880046514.01.T01:CDS 25.0%
! CTTATAACAATATATGCAAG+TGG + Chr8:74259779-74259798 MsG0880046514.01.T01:intron 25.0%
! TAAACAGAAACAGTTTCATT+TGG - Chr8:74259427-74259446 None:intergenic 25.0%
! TAAATTAGGTTCTCTTATGT+AGG + Chr8:74259310-74259329 MsG0880046514.01.T01:intron 25.0%
! TCTCAATTTGGTTAGTATTT+AGG + Chr8:74258647-74258666 MsG0880046514.01.T01:intron 25.0%
! TGAAATCATAAGCATTTGTA+GGG - Chr8:74259949-74259968 None:intergenic 25.0%
! TTATGTCAACTCTATTTCAT+TGG + Chr8:74260049-74260068 MsG0880046514.01.T01:intron 25.0%
! TTTACTAGTAGTATCAATCT+TGG + Chr8:74258966-74258985 MsG0880046514.01.T01:intron 25.0%
!! AACTTTTCAAACTCTTACTT+TGG - Chr8:74259291-74259310 None:intergenic 25.0%
!! AAGAATACGAAATTGATTCA+TGG + Chr8:74259987-74260006 MsG0880046514.01.T01:CDS 25.0%
!! AATTTAGCACCACATTTTAA+AGG + Chr8:74259574-74259593 MsG0880046514.01.T01:intron 25.0%
!! ACATTGTTTCTTAGATCATA+TGG - Chr8:74258923-74258942 None:intergenic 25.0%
!! AGAATACGAAATTGATTCAT+GGG + Chr8:74259988-74260007 MsG0880046514.01.T01:CDS 25.0%
!! TATTTGTTAGAAATTCCTAC+AGG + Chr8:74260383-74260402 MsG0880046514.01.T01:intron 25.0%
!! TTAAAATGTGGTGCTAAATT+TGG - Chr8:74259574-74259593 None:intergenic 25.0%
!!! AGGTGTTTTATTGATTTTGA+TGG + Chr8:74259644-74259663 MsG0880046514.01.T01:intron 25.0%
!!! CTTTCATCTTTTGAAATTGT+TGG - Chr8:74259125-74259144 None:intergenic 25.0%
!!! GTTTTATTGATTTTGATGGA+AGG + Chr8:74259648-74259667 MsG0880046514.01.T01:intron 25.0%
!!! TAAAAATGCATTGCTGTTTT+AGG - Chr8:74258950-74258969 None:intergenic 25.0%
AAAATTAGTCACACTGTTTG+GGG + Chr8:74259911-74259930 MsG0880046514.01.T01:CDS 30.0%
AAATTTGAGAGACAATTTCG+TGG + Chr8:74259721-74259740 MsG0880046514.01.T01:intron 30.0%
ACAAAATTAGTCACACTGTT+TGG + Chr8:74259909-74259928 MsG0880046514.01.T01:CDS 30.0%
ACTTAGAATTTATCACTTGC+AGG + Chr8:74259846-74259865 MsG0880046514.01.T01:intron 30.0%
CAAAATTAGTCACACTGTTT+GGG + Chr8:74259910-74259929 MsG0880046514.01.T01:CDS 30.0%
CAAGGGATATATACAGTATA+GGG - Chr8:74258756-74258775 None:intergenic 30.0%
CAATTTCAAAAGATGAAAGG+TGG + Chr8:74259126-74259145 MsG0880046514.01.T01:CDS 30.0%
CACTCAATTCATTACCTATA+TGG - Chr8:74260096-74260115 None:intergenic 30.0%
CATATAGGTAATGAATTGAG+TGG + Chr8:74260094-74260113 MsG0880046514.01.T01:intron 30.0%
CTTAGAATTTATCACTTGCA+GGG + Chr8:74259847-74259866 MsG0880046514.01.T01:intron 30.0%
GACTATTAAAGTCAATAAGC+AGG + Chr8:74259624-74259643 MsG0880046514.01.T01:intron 30.0%
TATAAGTGATGGTTTGAACT+TGG - Chr8:74260209-74260228 None:intergenic 30.0%
TCAACTCAAGATATTGAACA+TGG + Chr8:74258501-74258520 MsG0880046514.01.T01:CDS 30.0%
TCTGCTATAGTCATTAATAG+AGG + Chr8:74260350-74260369 MsG0880046514.01.T01:intron 30.0%
! AGAAGTACATTATGACAATG+AGG + Chr8:74259446-74259465 MsG0880046514.01.T01:intron 30.0%
! GGATTGTTTGGATTTTCAAT+GGG + Chr8:74259147-74259166 MsG0880046514.01.T01:CDS 30.0%
! GTGACTAAATTGACTTTAAG+CGG - Chr8:74259547-74259566 None:intergenic 30.0%
! TGGATTGTTTGGATTTTCAA+TGG + Chr8:74259146-74259165 MsG0880046514.01.T01:CDS 30.0%
! TTTTAGTCCTCGAAATTGTA+AGG - Chr8:74259747-74259766 None:intergenic 30.0%
!! AACAGAGAACCTTTAAAATG+TGG - Chr8:74259586-74259605 None:intergenic 30.0%
!! CAGAAAAATCACTTTTATGC+TGG + Chr8:74259822-74259841 MsG0880046514.01.T01:intron 30.0%
!! TTGCTATTTCGCAAACTTAA+AGG - Chr8:74259519-74259538 None:intergenic 30.0%
!!! ATCTTTTGAAATTGTTGGCA+AGG - Chr8:74259120-74259139 None:intergenic 30.0%
!!! TCTTTTGAAATTGTTGGCAA+GGG - Chr8:74259119-74259138 None:intergenic 30.0%
AAACTCTTACTTTGGCAAGA+AGG - Chr8:74259283-74259302 None:intergenic 35.0%
AAATCAAACGAAGAGAAACC+AGG - Chr8:74258482-74258501 None:intergenic 35.0%
ACTTTGGCAAGAAGGAAAAA+AGG - Chr8:74259275-74259294 None:intergenic 35.0%
AGTTCAAAATGAGAGAATGC+AGG - Chr8:74258781-74258800 None:intergenic 35.0%
ATGCTTACACATGAAAAGGT+GGG + Chr8:74259170-74259189 MsG0880046514.01.T01:CDS 35.0%
ATGGTTTGATAAGCTTCTTG+AGG + Chr8:74260255-74260274 MsG0880046514.01.T01:CDS 35.0%
ATTAGGTTCTCTTATGTAGG+AGG + Chr8:74259313-74259332 MsG0880046514.01.T01:intron 35.0%
ATTCAAGCCAAAAGTCATCA+TGG - Chr8:74259873-74259892 None:intergenic 35.0%
CAGAAAGAACTATGTAAACC+TGG - Chr8:74260334-74260353 None:intergenic 35.0%
CTCTTCATCTGTTCTCAATT+TGG + Chr8:74258635-74258654 MsG0880046514.01.T01:intron 35.0%
GAGGTTTCTATCAAAAGGAA+TGG + Chr8:74260236-74260255 MsG0880046514.01.T01:CDS 35.0%
GCAAGGGATATATACAGTAT+AGG - Chr8:74258757-74258776 None:intergenic 35.0%
GGTAATGAATTGAGTGGTAA+AGG + Chr8:74260100-74260119 MsG0880046514.01.T01:intron 35.0%
TATTGTAGTCACACTTCTTG+AGG - Chr8:74258603-74258622 None:intergenic 35.0%
TCAGAAACCATTCAAACACA+TGG + Chr8:74260507-74260526 MsG0880046514.01.T01:CDS 35.0%
TCATTTGCGCTACTATTGAT+TGG + Chr8:74258574-74258593 MsG0880046514.01.T01:CDS 35.0%
TTAGGTTCTCTTATGTAGGA+GGG + Chr8:74259314-74259333 MsG0880046514.01.T01:intron 35.0%
! ACACATTTGTGGATAGCTTT+TGG + Chr8:74260595-74260614 MsG0880046514.01.T01:CDS 35.0%
! CATGTATATAATTTGGGACC+AGG + Chr8:74260313-74260332 MsG0880046514.01.T01:CDS 35.0%
! GAAATTGATTCATGGGAGTT+TGG + Chr8:74259995-74260014 MsG0880046514.01.T01:CDS 35.0%
! TGATGTTTCTGACACATTTG+TGG + Chr8:74260584-74260603 MsG0880046514.01.T01:CDS 35.0%
!! AAGATGAAAGGTGGATTGTT+TGG + Chr8:74259135-74259154 MsG0880046514.01.T01:CDS 35.0%
!!! CTTTTGAAATTGTTGGCAAG+GGG - Chr8:74259118-74259137 None:intergenic 35.0%
!!! TCAATGTTGATTGGCTTTTC+AGG + Chr8:74258833-74258852 MsG0880046514.01.T01:intron 35.0%
!!! TGCTATCACTTTTTGTAGCT+TGG + Chr8:74259395-74259414 MsG0880046514.01.T01:intron 35.0%
AAACCATCACTTATAGCACC+AGG + Chr8:74260214-74260233 MsG0880046514.01.T01:CDS 40.0%
ACCAGGAGGTTTCTATCAAA+AGG + Chr8:74260231-74260250 MsG0880046514.01.T01:CDS 40.0%
AGAAACCAGGAAGAGAAACA+AGG - Chr8:74258469-74258488 None:intergenic 40.0%
ATCCTTGCAAAGGCAATACA+AGG + Chr8:74258870-74258889 MsG0880046514.01.T01:CDS 40.0%
GATAAGCTTCTTGAGGTTTC+AGG + Chr8:74260262-74260281 MsG0880046514.01.T01:CDS 40.0%
GATGCTTACACATGAAAAGG+TGG + Chr8:74259169-74259188 MsG0880046514.01.T01:CDS 40.0%
GTCTAATCCTATCCTTGCAA+AGG + Chr8:74258860-74258879 MsG0880046514.01.T01:CDS 40.0%
TACCTTGTATTGCCTTTGCA+AGG - Chr8:74258875-74258894 None:intergenic 40.0%
TGGGATGCTTACACATGAAA+AGG + Chr8:74259166-74259185 MsG0880046514.01.T01:CDS 40.0%
TGTATTGCCTTTGCAAGGAT+AGG - Chr8:74258870-74258889 None:intergenic 40.0%
TTCTTTGCATGCTGCCATAT+AGG + Chr8:74260079-74260098 MsG0880046514.01.T01:intron 40.0%
! ATGGTTACTTGATAGCTCTC+AGG + Chr8:74259025-74259044 MsG0880046514.01.T01:intron 40.0%
! GAATTGAGTGGTAAAGGCAT+CGG + Chr8:74260106-74260125 MsG0880046514.01.T01:CDS 40.0%
! TCCTTTTGATAGAAACCTCC+TGG - Chr8:74260235-74260254 None:intergenic 40.0%
! TTTGCGCTACTATTGATTGG+TGG + Chr8:74258577-74258596 MsG0880046514.01.T01:CDS 40.0%
AATGAGAGAATGCAGGTGCA+AGG - Chr8:74258774-74258793 None:intergenic 45.0%
ATCGAAGTGAACGGAGTTCA+AGG + Chr8:74258528-74258547 MsG0880046514.01.T01:CDS 45.0%
ATGAGAGAATGCAGGTGCAA+GGG - Chr8:74258773-74258792 None:intergenic 45.0%
ATTAGTCACACTGTTTGGGG+AGG + Chr8:74259914-74259933 MsG0880046514.01.T01:CDS 45.0%
CAATCACTTGTGTTAGACCC+CGG + Chr8:74258720-74258739 MsG0880046514.01.T01:intron 45.0%
CATGGTTCCATCGAAGTGAA+CGG + Chr8:74258519-74258538 MsG0880046514.01.T01:CDS 45.0%
CCAAGGACCATGTGTTTGAA+TGG - Chr8:74260517-74260536 None:intergenic 45.0%
CCATTCAAACACATGGTCCT+TGG + Chr8:74260514-74260533 MsG0880046514.01.T01:CDS 45.0%
CCTCCAACTCTTATCCTCAA+AGG - Chr8:74259051-74259070 None:intergenic 45.0%
GTGACTACAATATTGCCCCT+GGG + Chr8:74258611-74258630 MsG0880046514.01.T01:intron 45.0%
TCAAACACATGGTCCTTGGT+CGG + Chr8:74260518-74260537 MsG0880046514.01.T01:CDS 45.0%
TGACTACAATATTGCCCCTG+GGG + Chr8:74258612-74258631 MsG0880046514.01.T01:intron 45.0%
TGTGACTACAATATTGCCCC+TGG + Chr8:74258610-74258629 MsG0880046514.01.T01:intron 45.0%
TTCCTACCTCATACAGCACT+CGG - Chr8:74259086-74259105 None:intergenic 45.0%
TTGAACTCCGTTCACTTCGA+TGG - Chr8:74258529-74258548 None:intergenic 45.0%
! AGGCCTTTGAGGATAAGAGT+TGG + Chr8:74259045-74259064 MsG0880046514.01.T01:CDS 45.0%
! CCTTTGAGGATAAGAGTTGG+AGG + Chr8:74259048-74259067 MsG0880046514.01.T01:CDS 45.0%
! GACTAATTTTGTGCCTCCCA+TGG - Chr8:74259901-74259920 None:intergenic 45.0%
! TTCGTGGCCTTACAATTTCG+AGG + Chr8:74259737-74259756 MsG0880046514.01.T01:intron 45.0%
! TTGGCTTGAATGCACTCCAT+GGG + Chr8:74259882-74259901 MsG0880046514.01.T01:CDS 45.0%
!! AGTGTTGATGCTGCACAGTA+CGG + Chr8:74260133-74260152 MsG0880046514.01.T01:CDS 45.0%
!! TTTGGCTTGAATGCACTCCA+TGG + Chr8:74259881-74259900 MsG0880046514.01.T01:CDS 45.0%
!!! AATAATGTTATTTAATTTAA+AGG + Chr8:74259679-74259698 MsG0880046514.01.T01:intron 5.0%
!!! ATAATGTTATTTAATTTAAA+GGG + Chr8:74259680-74259699 MsG0880046514.01.T01:intron 5.0%
AGAACAGATGAAGAGCCCCA+GGG - Chr8:74258630-74258649 None:intergenic 50.0%
AGATCCTGCGCACTTAAGCA+AGG + Chr8:74260461-74260480 MsG0880046514.01.T01:CDS 50.0%
AGTATAGGGCCAGTACCTAC+CGG - Chr8:74258742-74258761 None:intergenic 50.0%
CCAGGAAGAGAAACAAGGCA+AGG - Chr8:74258464-74258483 None:intergenic 50.0%
CCATCACTTATAGCACCAGG+AGG + Chr8:74260217-74260236 MsG0880046514.01.T01:CDS 50.0%
CGGGGTCTAACACAAGTGAT+TGG - Chr8:74258722-74258741 None:intergenic 50.0%
CTTCTTGAGGTTTCAGGCAC+AGG + Chr8:74260268-74260287 MsG0880046514.01.T01:CDS 50.0%
GGAAGAGAAACAAGGCAAGG+TGG - Chr8:74258461-74258480 None:intergenic 50.0%
TCTACCTTGCTTAAGTGCGC+AGG - Chr8:74260468-74260487 None:intergenic 50.0%
TGATAGCTCTCAGGCCTTTG+AGG + Chr8:74259034-74259053 MsG0880046514.01.T01:intron 50.0%
! GTGTTGATGCTGCACAGTAC+GGG + Chr8:74260134-74260153 MsG0880046514.01.T01:CDS 50.0%
! TGCAGGGCCATGATGACTTT+TGG + Chr8:74259863-74259882 MsG0880046514.01.T01:intron 50.0%
!! CCTCCTGGTGCTATAAGTGA+TGG - Chr8:74260220-74260239 None:intergenic 50.0%
!! CCTTGCCTTGTTTCTCTTCC+TGG + Chr8:74258461-74258480 MsG0880046514.01.T01:CDS 50.0%
AAGCTGGCGGCATTCAACAG+TGG + Chr8:74260555-74260574 MsG0880046514.01.T01:CDS 55.0%
ACACTGTTTGGGGAGGAGAC+TGG + Chr8:74259921-74259940 MsG0880046514.01.T01:CDS 55.0%
CACTGTTTGGGGAGGAGACT+GGG + Chr8:74259922-74259941 MsG0880046514.01.T01:CDS 55.0%
CACTTGTGTTAGACCCCGGT+AGG + Chr8:74258724-74258743 MsG0880046514.01.T01:intron 55.0%
GAACAGATGAAGAGCCCCAG+GGG - Chr8:74258629-74258648 None:intergenic 55.0%
GAGAACAGATGAAGAGCCCC+AGG - Chr8:74258631-74258650 None:intergenic 55.0%
GCTTGAATGCACTCCATGGG+AGG + Chr8:74259885-74259904 MsG0880046514.01.T01:CDS 55.0%
GTATAGGGCCAGTACCTACC+GGG - Chr8:74258741-74258760 None:intergenic 55.0%
TATAGGGCCAGTACCTACCG+GGG - Chr8:74258740-74258759 None:intergenic 55.0%
TGTTAGACCCCGGTAGGTAC+TGG + Chr8:74258730-74258749 MsG0880046514.01.T01:intron 55.0%
! GACCGAGTGCTGTATGAGGT+AGG + Chr8:74259081-74259100 MsG0880046514.01.T01:CDS 55.0%
! GCAAGACCGAGTGCTGTATG+AGG + Chr8:74259077-74259096 MsG0880046514.01.T01:CDS 55.0%
ATGGTCCTTGGTCGGCTGCT+TGG + Chr8:74260526-74260545 MsG0880046514.01.T01:CDS 60.0%
CTGGCGGCATTCAACAGTGG+TGG + Chr8:74260558-74260577 MsG0880046514.01.T01:CDS 60.0%
TGCTTGGGTGGAGAAGCTGG+CGG + Chr8:74260542-74260561 MsG0880046514.01.T01:CDS 60.0%
TGGTCCTTGGTCGGCTGCTT+GGG + Chr8:74260527-74260546 MsG0880046514.01.T01:CDS 60.0%
GGCTGCTTGGGTGGAGAAGC+TGG + Chr8:74260539-74260558 MsG0880046514.01.T01:CDS 65.0%
TCCACCCAAGCAGCCGACCA+AGG - Chr8:74260534-74260553 None:intergenic 65.0%
TCCTTGGTCGGCTGCTTGGG+TGG + Chr8:74260530-74260549 MsG0880046514.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 74258450 74260620 74258450 ID=MsG0880046514.01;Name=MsG0880046514.01
Chr8 mRNA 74258450 74260620 74258450 ID=MsG0880046514.01.T01;Parent=MsG0880046514.01;Name=MsG0880046514.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0.8|0.66|1|1|1|6|0|317
Chr8 exon 74258450 74258608 74258450 ID=MsG0880046514.01.T01:exon:30897;Parent=MsG0880046514.01.T01
Chr8 exon 74258855 74258891 74258855 ID=MsG0880046514.01.T01:exon:30898;Parent=MsG0880046514.01.T01
Chr8 exon 74259040 74259223 74259040 ID=MsG0880046514.01.T01:exon:30899;Parent=MsG0880046514.01.T01
Chr8 exon 74259868 74260016 74259868 ID=MsG0880046514.01.T01:exon:30900;Parent=MsG0880046514.01.T01
Chr8 exon 74260101 74260334 74260101 ID=MsG0880046514.01.T01:exon:30901;Parent=MsG0880046514.01.T01
Chr8 exon 74260430 74260620 74260430 ID=MsG0880046514.01.T01:exon:30902;Parent=MsG0880046514.01.T01
Chr8 CDS 74258450 74258608 74258450 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Chr8 CDS 74258855 74258891 74258855 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Chr8 CDS 74259040 74259223 74259040 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Chr8 CDS 74259868 74260016 74259868 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Chr8 CDS 74260101 74260334 74260101 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Chr8 CDS 74260430 74260620 74260430 ID=MsG0880046514.01.T01:cds;Parent=MsG0880046514.01.T01
Gene Sequence

>MsG0880046514.01.T01

ATGGGATTCCACCTTGCCTTGTTTCTCTTCCTGGTTTCTCTTCGTTTGATTTCAACTCAAGATATTGAACATGGTTCCATCGAAGTGAACGGAGTTCAAGGAATTGCTGAAAATGATGATAACTTCATTTGCGCTACTATTGATTGGTGGCCTCAAGAAGACTTGTCTAATCCTATCCTTGCAAAGGCAATACAAGCTCTCAGGCCTTTGAGGATAAGAGTTGGAGGTTCATTGCAAGACCGAGTGCTGTATGAGGTAGGAAGTTTGAAGTCCCCTTGCCAACAATTTCAAAAGATGAAAGGTGGATTGTTTGGATTTTCAATGGGATGCTTACACATGAAAAGGTGGGATGAGCTGAATCATTTTTTCAAAAATACAGGGGCCATGATGACTTTTGGCTTGAATGCACTCCATGGGAGGCACAAAATTAGTCACACTGTTTGGGGAGGAGACTGGGACCCTACAAATGCTTATGATTTCATAAATTACACCATATCAAAAGAATACGAAATTGATTCATGGGAGTTTGGTAATGAATTGAGTGGTAAAGGCATCGGTGCAAGTGTTGATGCTGCACAGTACGGGAAAGACTTGATCAAGCTTAAACAAAAGTTAAACACACTATACAAGAACACCAAGTTCAAACCATCACTTATAGCACCAGGAGGTTTCTATCAAAAGGAATGGTTTGATAAGCTTCTTGAGGTTTCAGGCACAGGCGTTGTCGATGTGATCACTCATCATGTATATAATTTGGGACCAGGTAATGATGCGCATCTTGAAAATAAGATTCTAGATCCTGCGCACTTAAGCAAGGTAGAATCAATTTTTAGCAATCTTTCAGAAACCATTCAAACACATGGTCCTTGGTCGGCTGCTTGGGTGGAGAAGCTGGCGGCATTCAACAGTGGTGGTCGTGATGTTTCTGACACATTTGTGGATAGCTTTTGGTAA
Protein sequence

>MsG0880046514.01.T01

MGFHLALFLFLVSLRLISTQDIEHGSIEVNGVQGIAENDDNFICATIDWWPQEDLSNPILAKAIQALRPLRIRVGGSLQDRVLYEVGSLKSPCQQFQKMKGGLFGFSMGCLHMKRWDELNHFFKNTGAMMTFGLNALHGRHKISHTVWGGDWDPTNAYDFINYTISKEYEIDSWEFGNELSGKGIGASVDAAQYGKDLIKLKQKLNTLYKNTKFKPSLIAPGGFYQKEWFDKLLEVSGTGVVDVITHHVYNLGPGNDAHLENKILDPAHLSKVESIFSNLSETIQTHGPWSAAWVEKLAAFNSGGRDVSDTFVDSFW*