AlfalfaGEDB | MsG0880046704.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046704.01

KEGG: -
GO: -
PFAM: PF03151

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046704.01.T01	AES91418.2	99.133	346	2	1	1	346	1	345	0	681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046704.01.T01	Q84L08	71.47	347	91	3	1	346	1	340	1.69E-168	475

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046704.01.T01	G7JU76	99.133	346	2	1	1	346	1	345	0.0	681

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0380015550.01	MsG0880046704.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046704.01.T01	MTR_4g113270	99.133	346	2	1	1	346	1	345	0.0	681
MsG0880046704.01.T01	MTR_4g113270	99.118	340	2	1	1	340	1	339	0.0	670
MsG0880046704.01.T01	MTR_1g100860	50.158	317	149	3	15	328	41	351	3.76e-98	295
MsG0880046704.01.T01	MTR_4g018770	49.527	317	151	3	15	328	35	345	4.61e-98	295
MsG0880046704.01.T01	MTR_4g018770	49.412	255	120	3	77	328	5	253	2.26e-76	236
MsG0880046704.01.T01	MTR_1g100860	49.804	255	119	3	77	328	5	253	3.06e-76	236
MsG0880046704.01.T01	MTR_3g463360	24.242	297	206	6	19	304	108	396	9.78e-13	68.9
MsG0880046704.01.T01	MTR_3g109070	27.692	260	164	7	18	267	20	265	2.18e-12	67.4
MsG0880046704.01.T01	MTR_3g109070	27.692	260	164	7	18	267	20	265	3.44e-12	66.2
MsG0880046704.01.T01	MTR_3g096310	23.102	303	218	5	18	311	45	341	6.90e-12	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046704.01.T01	AT5G19980	71.470	347	91	3	1	346	1	340	1.73e-169	475
MsG0880046704.01.T01	AT1G76340	48.148	324	166	2	15	337	37	359	8.55e-100	300
MsG0880046704.01.T01	AT4G31600	26.848	257	170	5	18	267	19	264	4.45e-13	69.7
MsG0880046704.01.T01	AT2G13650	22.896	297	212	5	18	304	38	327	8.98e-12	65.9
MsG0880046704.01.T01	AT2G13650	22.896	297	212	5	18	304	38	327	8.98e-12	65.9
MsG0880046704.01.T01	AT4G31600	27.136	199	132	3	18	210	19	210	1.32e-11	65.1

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Find 62 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCCAGTAACGGTAAACG+CGG	0.739549	8:+77033126	None:intergenic
AAGAAGAAAACGAGTGCTGC+AGG	0.450306	8:+77033661	None:intergenic
AAGCATATGGTTATGAGTCT+TGG	0.400403	8:-77033373	MsG0880046704.01.T01:CDS
AAGGTAAAATTAGACGGAGA+AGG	0.587179	8:+77033523	None:intergenic
AATAACAACCAAGGACAAAA+AGG	0.342091	8:+77033504	None:intergenic
ACCAGCAAGAATAACAACCA+AGG	0.595444	8:+77033495	None:intergenic
ACCGATTACTAAGCCACTTG+TGG	0.637733	8:+77033864	None:intergenic
ACTCCCAGTACTCGATCTCA+AGG	0.635928	8:+77033249	None:intergenic
ACTGCCTTGAGATCGAGTAC+TGG	0.496102	8:-77033253	MsG0880046704.01.T01:CDS
AGAAGAAAACGAGTGCTGCA+GGG	0.656660	8:+77033662	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAACAACCAAGGACAAAA+AGG	+	Chr8:77033277-77033296	None:intergenic	30.0%
ATAAACCATCTCAGTAGTAA+TGG	+	Chr8:77033382-77033401	None:intergenic	30.0%
GAAACCCTAATTTACCTAAA+AGG	+	Chr8:77033053-77033072	None:intergenic	30.0%
AAGCATATGGTTATGAGTCT+TGG	-	Chr8:77033405-77033424	MsG0880046704.01.T01:CDS	35.0%
AAGGTAAAATTAGACGGAGA+AGG	+	Chr8:77033258-77033277	None:intergenic	35.0%
AGTCTTGGATTGAATACTTG+GGG	-	Chr8:77033420-77033439	MsG0880046704.01.T01:CDS	35.0%
ATTACTCAATTCAACTACCC+AGG	-	Chr8:77032982-77033001	MsG0880046704.01.T01:CDS	35.0%
CAATATCTCACTTCTTCACT+CGG	-	Chr8:77033021-77033040	MsG0880046704.01.T01:CDS	35.0%
CCAGTCAAAAACCAAAAAAC+AGG	+	Chr8:77033486-77033505	None:intergenic	35.0%
GAGTCTTGGATTGAATACTT+GGG	-	Chr8:77033419-77033438	MsG0880046704.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	77032880	77033920	77032880	ID=MsG0880046704.01;Name=MsG0880046704.01
Chr8	mRNA	77032880	77033920	77032880	ID=MsG0880046704.01.T01;Parent=MsG0880046704.01;Name=MsG0880046704.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|346
Chr8	exon	77032880	77033920	77032880	ID=MsG0880046704.01.T01:exon:8761;Parent=MsG0880046704.01.T01
Chr8	CDS	77032880	77033920	77032880	ID=MsG0880046704.01.T01:cds;Parent=MsG0880046704.01.T01

Gene Sequence

>MsG0880046704.01.T01

ATGTCATCAACAACATTGAAACAACAACACTACGCCACAAGTGGCTTAGTAATCGGTTACGCACTCTGTTCAAGCTTATTAGCAATCATAAACAAATACGCTATTACTCAATTCAACTACCCAGGTCTTTTAACTGCGTTACAATATCTCACTTCTTCACTCGGTGTTTACCTTTTAGGTAAATTAGGGTTTCTTCATCACGATCCTTTCACTATTCCAATCGCTAAGAAATTCTTCCCTGCAGCACTCGTTTTCTTCTTAGCGATCTTCACCAACACCAATCTCCTTCGTCACGCTAACGTTGATACGTTCATTGTTTTCAGATCTCTTACCCCTCTTCTTGTTGCTCTCGCTGATACTGCGTTTCGCGGTCAACCTTCTCCGTCTAATTTTACCTTTTTGTCCTTGGTTGTTATTCTTGCTGGTGCTGTTGGTTATGTTGCTACTGATTCCGGTTTTACACTCACGGCTTATTCTTGGGCTTTTGCTTATTTGGTTACCATTACTACTGAGATGGTTTATATTAAGCATATGGTTATGAGTCTTGGATTGAATACTTGGGGTTTTGTGCTTTATAATAATGTATTGTCATTGATGATTGCTCCTGTTTTTTGGTTTTTGACTGGTGAGAATTTTGAGGTTTTTACTGCCTTGAGATCGAGTACTGGGAGTTTGTTCGACGTGAATGCGTTTTTGGCGGTTTCGTTGTCTTGTGTGTTTGGTTTGTTGATTAGTTTCTTTGGATTTGCTGCTAGAAAAGCTGTTTCTGCTACCGCGTTTACCGTTACTGGGGTTGTGAATAAGTTTCTGACTGTGGCAATTAATGTGACGATTTGGGATAAGCATGCTAGTCCAGCTGGTTTGGTTTGTTTGCTTTTTACGATTATTGGGGGTGTTCTTTATCAGCAATCGGTGACTGGAAGTGGTTCGCAACAGGCGGTTGTGGTGACTAAACAACAGTCTGATGTTGAAAGTAGTCTTGTTGGTGATGGTGATTCTGAAGATGAGAGTGAAGGAAAGGGTAAACATGCTTCTCTATGA

Protein sequence

>MsG0880046704.01.T01

MSSTTLKQQHYATSGLVIGYALCSSLLAIINKYAITQFNYPGLLTALQYLTSSLGVYLLGKLGFLHHDPFTIPIAKKFFPAALVFFLAIFTNTNLLRHANVDTFIVFRSLTPLLVALADTAFRGQPSPSNFTFLSLVVILAGAVGYVATDSGFTLTAYSWAFAYLVTITTEMVYIKHMVMSLGLNTWGFVLYNNVLSLMIAPVFWFLTGENFEVFTALRSSTGSLFDVNAFLAVSLSCVFGLLISFFGFAARKAVSATAFTVTGVVNKFLTVAINVTIWDKHASPAGLVCLLFTIIGGVLYQQSVTGSGSQQAVVVTKQQSDVESSLVGDGDSEDESEGKGKHASL*