AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046715.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046715.01.T01 AT1G68680 70.667 75 20 1 4 78 3 75 5.27e-31 103

Find 16 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGGTCAATTAAGAAAA+AGG 0.227301 8:-77263502 MsG0880046715.01.T01:exon
TGATTCATTGTATCGGAAAA+AGG 0.264475 8:-77263470 MsG0880046715.01.T01:exon
AAATAAATCTAATATTCTTT+TGG 0.276474 8:+77263718 None:intergenic
TTTGAGTTAGAAATCAAGTT+AGG 0.382396 8:+77263813 None:intergenic
TCGAGAGTTGTTGAAACAGC+AGG 0.457017 8:+77263433 None:intergenic
AGAAAACGTTACATGTTAGC+AGG 0.515067 8:+77263372 None:intergenic
TCTTAAAAGTGTCCTTCTGA+AGG 0.524301 8:-77263765 MsG0880046715.01.T01:exon
ATCAGTGTGATTCATTGTAT+CGG 0.527719 8:-77263477 MsG0880046715.01.T01:exon
GTTTCAACAACTCTCGATCT+CGG 0.543448 8:-77263427 MsG0880046715.01.T01:exon
ATCGAACGACGTCGGCGCCA+TGG 0.544487 8:+77263395 None:intergenic
GGCTTAAATATCGCGTCCCA+AGG 0.573721 8:+77263834 None:intergenic
AAGAAAACTAATCCTTCAGA+AGG 0.577047 8:+77263753 None:intergenic
GATCTCGGTCAATTCCGCCA+TGG 0.632156 8:-77263412 MsG0880046715.01.T01:exon
CGAGAGTTGTTGAAACAGCA+GGG 0.636152 8:+77263434 None:intergenic
GAACGACGTCGGCGCCATGG+CGG 0.678846 8:+77263398 None:intergenic
TTAGCAGGATCGAACGACGT+CGG 0.711088 8:+77263387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATTATTTATTTAATT+AGG - Chr8:77263273-77263292 MsG0880046715.01.T01:CDS 0.0%
!! TAATTAAATAAATAATATAA+TGG + Chr8:77263274-77263293 None:intergenic 0.0%
!! TAGAATAAATTAAAGAAAAA+AGG + Chr8:77261106-77261125 None:intergenic 10.0%
!!! AAATAAATCTAATATTCTTT+TGG + Chr8:77260401-77260420 None:intergenic 10.0%
!!! TCATTTTTTTTTTTTTTTTG+AGG + Chr8:77263052-77263071 None:intergenic 10.0%
!!! ACTGTATTTATCTTTTTTTT+AGG + Chr8:77261951-77261970 None:intergenic 15.0%
!!! AGTCAAATTGTTTTTATATA+AGG - Chr8:77261968-77261987 MsG0880046715.01.T01:intron 15.0%
!!! ATTTGAATTTGATTTTTTGA+TGG + Chr8:77260483-77260502 None:intergenic 15.0%
!! ACAAGTCAAATAATTTATTG+AGG + Chr8:77263835-77263854 None:intergenic 20.0%
!! TAGAATGAAATTACATTGAT+TGG - Chr8:77263581-77263600 MsG0880046715.01.T01:exon 20.0%
!! TGGTATATGATAGAAAATTA+TGG - Chr8:77261726-77261745 MsG0880046715.01.T01:intron 20.0%
!! TTAATTGATATCAGAATCAA+TGG + Chr8:77263098-77263117 None:intergenic 20.0%
!!! AAGGATTAGTTTTCTTTTTT+GGG - Chr8:77260370-77260389 MsG0880046715.01.T01:CDS 20.0%
!!! ACTATTTTCATAAGTTATCT+TGG - Chr8:77261996-77262015 MsG0880046715.01.T01:intron 20.0%
!!! TTGAACATTTAGAATAGTTT+GGG - Chr8:77261308-77261327 MsG0880046715.01.T01:intron 20.0%
!!! TTTGAACATTTAGAATAGTT+TGG - Chr8:77261307-77261326 MsG0880046715.01.T01:intron 20.0%
!!! TTTTTTTAGCACTATTATTC+TGG - Chr8:77260598-77260617 MsG0880046715.01.T01:intron 20.0%
! AACATTTAGACTATCAAACA+GGG + Chr8:77261836-77261855 None:intergenic 25.0%
! AATACAGCAACACTAATAAT+AGG - Chr8:77263463-77263482 MsG0880046715.01.T01:exon 25.0%
! AATGAATTGAATGAAGAAAG+TGG + Chr8:77260932-77260951 None:intergenic 25.0%
! AGCAGTTAAAGAATTGATTA+AGG + Chr8:77260807-77260826 None:intergenic 25.0%
! ATACAGCAACACTAATAATA+GGG - Chr8:77263464-77263483 MsG0880046715.01.T01:exon 25.0%
! ATTCTGGTCAATTAAGAAAA+AGG - Chr8:77260614-77260633 MsG0880046715.01.T01:intron 25.0%
! CATTATCATTAGTCCAAATT+TGG - Chr8:77262912-77262931 MsG0880046715.01.T01:intron 25.0%
! GGATGGTAACAAAAAATTTA+CGG - Chr8:77263602-77263621 MsG0880046715.01.T01:exon 25.0%
! TACAAATTGTTGTCAAATAG+CGG + Chr8:77262445-77262464 None:intergenic 25.0%
! TCTAGTTATACAATTCAGAA+AGG + Chr8:77263565-77263584 None:intergenic 25.0%
! TGATTGTCTCAAATTATTGT+CGG + Chr8:77261524-77261543 None:intergenic 25.0%
! TTGAGTTATGACAGTAAATA+AGG - Chr8:77263364-77263383 MsG0880046715.01.T01:intron 25.0%
! TTTCTATCATATACCATGTT+TGG + Chr8:77261722-77261741 None:intergenic 25.0%
!! ATGAAATTACATTGATTGGA+TGG - Chr8:77263585-77263604 MsG0880046715.01.T01:exon 25.0%
!! ATTTTCAATTTCAGTTCGTT+TGG - Chr8:77260994-77261013 MsG0880046715.01.T01:intron 25.0%
!! CAATTAATCTTCATTCGTTT+TGG - Chr8:77263111-77263130 MsG0880046715.01.T01:CDS 25.0%
!! TGAACATTTAGAATAGTTTG+GGG - Chr8:77261309-77261328 MsG0880046715.01.T01:intron 25.0%
!! TTTGAGTTAGAAATCAAGTT+AGG + Chr8:77260306-77260325 None:intergenic 25.0%
!! TTTTCAATTTCAGTTCGTTT+GGG - Chr8:77260995-77261014 MsG0880046715.01.T01:intron 25.0%
!!! ACGTCAAAATTATTTTGTGA+AGG + Chr8:77262990-77263009 None:intergenic 25.0%
!!! GAAGGATTAGTTTTCTTTTT+TGG - Chr8:77260369-77260388 MsG0880046715.01.T01:CDS 25.0%
AAACAGTCATTTAGATGTCT+CGG + Chr8:77262606-77262625 None:intergenic 30.0%
AAATGCAAAAGATTAGGGTT+AGG + Chr8:77262150-77262169 None:intergenic 30.0%
AAGAAAACTAATCCTTCAGA+AGG + Chr8:77260366-77260385 None:intergenic 30.0%
AAGATGTTGTAACTAAGCTT+AGG - Chr8:77261418-77261437 MsG0880046715.01.T01:intron 30.0%
AAGTTATCTTGGAGAGTTTA+TGG - Chr8:77262007-77262026 MsG0880046715.01.T01:intron 30.0%
AATAATTTATTGAGGACCTG+AGG + Chr8:77263827-77263846 None:intergenic 30.0%
AATTAAGCCCTTATAGCATA+AGG - Chr8:77261872-77261891 MsG0880046715.01.T01:intron 30.0%
ACTAATAATAGGGAGAAGTA+TGG - Chr8:77263474-77263493 MsG0880046715.01.T01:exon 30.0%
AGATGTCTCGGAAAAATTAT+GGG + Chr8:77262594-77262613 None:intergenic 30.0%
ATAGTCTAAATGTTGTCAAG+TGG - Chr8:77261842-77261861 MsG0880046715.01.T01:intron 30.0%
ATCAGTGTGATTCATTGTAT+CGG - Chr8:77260639-77260658 MsG0880046715.01.T01:intron 30.0%
ATCATTAGTCCAAATTTGGT+TGG - Chr8:77262916-77262935 MsG0880046715.01.T01:intron 30.0%
ATCCCAAAATGCAAAAGATT+AGG + Chr8:77262156-77262175 None:intergenic 30.0%
ATTAAGCCCTTATAGCATAA+GGG - Chr8:77261873-77261892 MsG0880046715.01.T01:intron 30.0%
CAACATTTAGACTATCAAAC+AGG + Chr8:77261837-77261856 None:intergenic 30.0%
CAAGCCAAAATGATACTAAA+AGG - Chr8:77263393-77263412 MsG0880046715.01.T01:exon 30.0%
GATTCATTGTATCGGAAAAA+GGG - Chr8:77260647-77260666 MsG0880046715.01.T01:intron 30.0%
GCTTATGAACATATCAGTAA+CGG - Chr8:77262046-77262065 MsG0880046715.01.T01:intron 30.0%
TACAACATCTTTCCTACTAT+AGG + Chr8:77261409-77261428 None:intergenic 30.0%
TACAATTCAGAAAGGAAACA+TGG + Chr8:77263557-77263576 None:intergenic 30.0%
TAGATGTCTCGGAAAAATTA+TGG + Chr8:77262595-77262614 None:intergenic 30.0%
TATGCTATAAGGGCTTAATT+AGG + Chr8:77261872-77261891 None:intergenic 30.0%
TCAAATTAGCCAATTCAAAC+AGG - Chr8:77262124-77262143 MsG0880046715.01.T01:intron 30.0%
TCAGAATAGAATCACAACTT+AGG - Chr8:77262948-77262967 MsG0880046715.01.T01:intron 30.0%
TCCCAAAATGCAAAAGATTA+GGG + Chr8:77262155-77262174 None:intergenic 30.0%
TGATCTGGATATTGTCATTA+AGG + Chr8:77263728-77263747 None:intergenic 30.0%
TGATTATACAGAGCATGTAT+TGG - Chr8:77263772-77263791 MsG0880046715.01.T01:exon 30.0%
TGATTCATTGTATCGGAAAA+AGG - Chr8:77260646-77260665 MsG0880046715.01.T01:intron 30.0%
TGGTCAATTGCAAATTTACA+AGG + Chr8:77263647-77263666 None:intergenic 30.0%
TTCATTATAAGATGCCAGTT+TGG - Chr8:77263204-77263223 MsG0880046715.01.T01:intron 30.0%
TTGACTAAAAAAACAGTCGA+TGG + Chr8:77263681-77263700 None:intergenic 30.0%
TTGTATTAAATAGCGTTTCG+TGG - Chr8:77262460-77262479 MsG0880046715.01.T01:intron 30.0%
TTTCAATTTCAGTTCGTTTG+GGG - Chr8:77260996-77261015 MsG0880046715.01.T01:intron 30.0%
TTTGTGTAGGATTGCAAAAT+GGG - Chr8:77261284-77261303 MsG0880046715.01.T01:intron 30.0%
! AAAAAAAGTGCAAACTGAAC+AGG - Chr8:77262824-77262843 MsG0880046715.01.T01:intron 30.0%
! AACCCTAATCTTTTGCATTT+TGG - Chr8:77262150-77262169 MsG0880046715.01.T01:intron 30.0%
! ACCCTAATCTTTTGCATTTT+GGG - Chr8:77262151-77262170 MsG0880046715.01.T01:intron 30.0%
! AGCACCTTTTAGTATCATTT+TGG + Chr8:77263400-77263419 None:intergenic 30.0%
! CTAATAATAGGGAGAAGTAT+GGG - Chr8:77263475-77263494 MsG0880046715.01.T01:exon 30.0%
! CTCATTTAGAGTTAAGAAAC+CGG - Chr8:77261251-77261270 MsG0880046715.01.T01:intron 30.0%
! CTTGTTAACTTTTGCTTTGT+GGG - Chr8:77262260-77262279 MsG0880046715.01.T01:intron 30.0%
! CTTTATGCGTGACTTAATTT+TGG - Chr8:77261209-77261228 MsG0880046715.01.T01:intron 30.0%
! GAACATTTAGAATAGTTTGG+GGG - Chr8:77261310-77261329 MsG0880046715.01.T01:intron 30.0%
! GAATTTTTCTGATGCTAAAC+TGG - Chr8:77262870-77262889 MsG0880046715.01.T01:intron 30.0%
! GCTAATTTGAAATTATCTGC+TGG + Chr8:77262114-77262133 None:intergenic 30.0%
! TAATGAGTTGAATCCAAACA+TGG - Chr8:77261706-77261725 MsG0880046715.01.T01:intron 30.0%
! TGCTCGTTCTTTGTTAATTT+TGG - Chr8:77263416-77263435 MsG0880046715.01.T01:exon 30.0%
! TTAGACTTTAGAGAAAGTAG+TGG - Chr8:77263149-77263168 MsG0880046715.01.T01:intron 30.0%
! TTTTGTGTAGGATTGCAAAA+TGG - Chr8:77261283-77261302 MsG0880046715.01.T01:intron 30.0%
!! ACTTGTTAACTTTTGCTTTG+TGG - Chr8:77262259-77262278 MsG0880046715.01.T01:intron 30.0%
!! TATAATGGCATTGACTTCAA+AGG + Chr8:77263259-77263278 None:intergenic 30.0%
!! TTATTTTGTGAAGGAATCCA+AGG + Chr8:77262981-77263000 None:intergenic 30.0%
AACAAACGATCTCTCAAAAC+AGG + Chr8:77261034-77261053 None:intergenic 35.0%
AAGACTGCTTAGACAGTTTA+TGG + Chr8:77262075-77262094 None:intergenic 35.0%
AAGTTTGAATTGCTTCTCTG+AGG - Chr8:77262213-77262232 MsG0880046715.01.T01:intron 35.0%
ACTCAATTAGTGTCAGTTTG+TGG + Chr8:77263350-77263369 None:intergenic 35.0%
AGAAAACGTTACATGTTAGC+AGG + Chr8:77260747-77260766 None:intergenic 35.0%
AGACAAGACAAACATGTAAG+AGG + Chr8:77263519-77263538 None:intergenic 35.0%
AGCATCATACAAATCTGATC+TGG + Chr8:77263743-77263762 None:intergenic 35.0%
AGTCTATGTATCCTTGATCT+CGG - Chr8:77262362-77262381 MsG0880046715.01.T01:intron 35.0%
ATGTTGTAACTAAGCTTAGG+TGG - Chr8:77261421-77261440 MsG0880046715.01.T01:intron 35.0%
ATTGTTCTTCCTTCTTGCAA+CGG + Chr8:77260844-77260863 None:intergenic 35.0%
CAGAGAAGCAATTCAAACTT+TGG + Chr8:77262213-77262232 None:intergenic 35.0%
CTACACAAAACACTAAACAC+CGG + Chr8:77261273-77261292 None:intergenic 35.0%
CTTAAACTTTCAGTGTGGTT+AGG - Chr8:77262848-77262867 MsG0880046715.01.T01:intron 35.0%
GAAAGGGGAAATAACATGAT+AGG - Chr8:77262301-77262320 MsG0880046715.01.T01:intron 35.0%
GACAAGACAAACATGTAAGA+GGG + Chr8:77263518-77263537 None:intergenic 35.0%
GAGACATCTAAATGACTGTT+TGG - Chr8:77262605-77262624 MsG0880046715.01.T01:intron 35.0%
GAGCATATATGAGAGGAAAA+AGG + Chr8:77260884-77260903 None:intergenic 35.0%
GATAAGCCCTTATGCTATAA+GGG + Chr8:77261882-77261901 None:intergenic 35.0%
GTAGTTATATTTGTCCGTGT+CGG - Chr8:77261555-77261574 MsG0880046715.01.T01:intron 35.0%
TAACTAAGCTTAGGTGGTTT+GGG - Chr8:77261427-77261446 MsG0880046715.01.T01:intron 35.0%
TCTCGGAAAAATTATGGGAA+GGG + Chr8:77262589-77262608 None:intergenic 35.0%
TGATAAGCCCTTATGCTATA+AGG + Chr8:77261883-77261902 None:intergenic 35.0%
TTAGTATTCTGTGCAACTTG+TGG - Chr8:77261182-77261201 MsG0880046715.01.T01:intron 35.0%
! ACTTTAGAGAAAGTAGTGGA+AGG - Chr8:77263153-77263172 MsG0880046715.01.T01:intron 35.0%
! GGAAGGTTTAAGATCAGTTA+GGG - Chr8:77263170-77263189 MsG0880046715.01.T01:intron 35.0%
! TAGTCCAAATTTGGTTGGTA+AGG - Chr8:77262921-77262940 MsG0880046715.01.T01:intron 35.0%
! TGGAAGGTTTAAGATCAGTT+AGG - Chr8:77263169-77263188 MsG0880046715.01.T01:intron 35.0%
!! AGTCCAAATTTGGTTGGTAA+GGG - Chr8:77262922-77262941 MsG0880046715.01.T01:intron 35.0%
!! AGTCGATGGATTGTTGAATT+TGG + Chr8:77263667-77263686 None:intergenic 35.0%
!! TCTTAAAAGTGTCCTTCTGA+AGG - Chr8:77260351-77260370 MsG0880046715.01.T01:exon 35.0%
AAGGAGAGTTTGTGCTTCAT+AGG - Chr8:77261616-77261635 MsG0880046715.01.T01:intron 40.0%
AAGTGGAGTGACTAACTTAG+AGG + Chr8:77260915-77260934 None:intergenic 40.0%
ACAACTTAGGCATCTTTCCT+TGG - Chr8:77262961-77262980 MsG0880046715.01.T01:intron 40.0%
AGAGGAAAAAGGAACTTGAG+AGG + Chr8:77260873-77260892 None:intergenic 40.0%
AGAGTTTGTGCTTCATAGGA+TGG - Chr8:77261620-77261639 MsG0880046715.01.T01:intron 40.0%
AGTAAGGAGGGTAGATCATA+TGG - Chr8:77261479-77261498 MsG0880046715.01.T01:intron 40.0%
AGTGGAGTGACTAACTTAGA+GGG + Chr8:77260914-77260933 None:intergenic 40.0%
ATCGTTTACATCACAACCTC+AGG - Chr8:77263808-77263827 MsG0880046715.01.T01:exon 40.0%
CAATGCTAGGCAAGAAAAGT+AGG - Chr8:77262559-77262578 MsG0880046715.01.T01:intron 40.0%
CAGGTCTTAAACTTTCAGTG+TGG - Chr8:77262843-77262862 MsG0880046715.01.T01:intron 40.0%
CATATGGCATTGTAGCATAG+CGG + Chr8:77262410-77262429 None:intergenic 40.0%
GTAACTAAGCTTAGGTGGTT+TGG - Chr8:77261426-77261445 MsG0880046715.01.T01:intron 40.0%
GTCTCGGAAAAATTATGGGA+AGG + Chr8:77262590-77262609 None:intergenic 40.0%
GTTGCAAGAAGGAAGAACAA+TGG - Chr8:77260843-77260862 MsG0880046715.01.T01:intron 40.0%
GTTTCAACAACTCTCGATCT+CGG - Chr8:77260689-77260708 MsG0880046715.01.T01:intron 40.0%
TAAGAGCAAGAATGCCAAAC+TGG + Chr8:77263221-77263240 None:intergenic 40.0%
TATGAAGCACAAACTCTCCT+TGG + Chr8:77261617-77261636 None:intergenic 40.0%
TCCTTGATCTCGGAAAATAG+AGG - Chr8:77262372-77262391 MsG0880046715.01.T01:intron 40.0%
TCGTTTGTTTACAGCTGTCT+TGG - Chr8:77261045-77261064 MsG0880046715.01.T01:intron 40.0%
TGACAACACTAGTCAATGCT+AGG - Chr8:77262546-77262565 MsG0880046715.01.T01:intron 40.0%
TGCGCTATAACGCAATAACA+CGG + Chr8:77262512-77262531 None:intergenic 40.0%
TGTCTAAGCAGTCTTACAAG+TGG - Chr8:77262080-77262099 MsG0880046715.01.T01:intron 40.0%
TGTGTGAGTAGACAAGGAAA+GGG - Chr8:77262285-77262304 MsG0880046715.01.T01:intron 40.0%
TTGTCAAATAGCGGCTATAC+TGG + Chr8:77262436-77262455 None:intergenic 40.0%
TTGTTCTTCCTTCTTGCAAC+GGG + Chr8:77260843-77260862 None:intergenic 40.0%
! ACCTCTATTTTCCGAGATCA+AGG + Chr8:77262376-77262395 None:intergenic 40.0%
! AGAACAGGAGCATATATGAG+AGG + Chr8:77260891-77260910 None:intergenic 40.0%
! CGGTGTTTAGTGTTTTGTGT+AGG - Chr8:77261271-77261290 MsG0880046715.01.T01:intron 40.0%
!! GTCCAAATTTGGTTGGTAAG+GGG - Chr8:77262923-77262942 MsG0880046715.01.T01:intron 40.0%
!! TAAGATCAGTTAGGGTGTTG+AGG - Chr8:77263178-77263197 MsG0880046715.01.T01:intron 40.0%
!! TCCAAATTTGGTTGGTAAGG+GGG - Chr8:77262924-77262943 MsG0880046715.01.T01:intron 40.0%
!! TGGCATTGACTTCAAAGGAA+TGG + Chr8:77263254-77263273 None:intergenic 40.0%
AAGGAGGGTAGATCATATGG+AGG - Chr8:77261482-77261501 MsG0880046715.01.T01:intron 45.0%
ACTAAGTGGGGTCAGTTACA+TGG + Chr8:77261763-77261782 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - Chr8:77261371-77261390 MsG0880046715.01.T01:intron 45.0%
AGGGTTAGGCCTGTTTGAAT+TGG + Chr8:77262136-77262155 None:intergenic 45.0%
ATGTAACTGACCCCACTTAG+TGG - Chr8:77261762-77261781 MsG0880046715.01.T01:intron 45.0%
CGAGAGTTGTTGAAACAGCA+GGG + Chr8:77260685-77260704 None:intergenic 45.0%
CGCTATGCTACAATGCCATA+TGG - Chr8:77262408-77262427 MsG0880046715.01.T01:intron 45.0%
CTGTGTGAGTAGACAAGGAA+AGG - Chr8:77262284-77262303 MsG0880046715.01.T01:intron 45.0%
GACTAACTTAGAGGGAGAAC+AGG + Chr8:77260906-77260925 None:intergenic 45.0%
GCACAAACTCTCCTTGGATT+AGG + Chr8:77261611-77261630 None:intergenic 45.0%
GCTATAACGCAATAACACGG+CGG + Chr8:77262509-77262528 None:intergenic 45.0%
GGAAAAAGGAACTTGAGAGG+AGG + Chr8:77260870-77260889 None:intergenic 45.0%
GGTTGTGATGTAAACGATGC+TGG + Chr8:77263806-77263825 None:intergenic 45.0%
GTGTGAGTAGACAAGGAAAG+GGG - Chr8:77262286-77262305 MsG0880046715.01.T01:intron 45.0%
GTTTGTGCTTCATAGGATGG+AGG - Chr8:77261623-77261642 MsG0880046715.01.T01:intron 45.0%
TCGAGAGTTGTTGAAACAGC+AGG + Chr8:77260686-77260705 None:intergenic 45.0%
TGTAACTGACCCCACTTAGT+GGG - Chr8:77261763-77261782 MsG0880046715.01.T01:intron 45.0%
TTGTTTACAGCTGTCTTGGC+TGG - Chr8:77261049-77261068 MsG0880046715.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr8:77261775-77261794 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr8:77261776-77261795 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + Chr8:77261777-77261796 None:intergenic 45.0%
! TTGGCTGGTGCTTTTCTTCA+TGG - Chr8:77261064-77261083 MsG0880046715.01.T01:intron 45.0%
! TTTCAGTTCGTTTGGGGTTG+CGG - Chr8:77261002-77261021 MsG0880046715.01.T01:intron 45.0%
!! AATTGCTTCTCTGAGGCTAC+TGG - Chr8:77262220-77262239 MsG0880046715.01.T01:intron 45.0%
!!! ATTTTAAATAAATGATAATT+CGG + Chr8:77260510-77260529 None:intergenic 5.0%
ACAGAGAACCCGTTGCAAGA+AGG - Chr8:77260832-77260851 MsG0880046715.01.T01:intron 50.0%
ACGTGGATTCTGCAGTAAGG+AGG - Chr8:77261466-77261485 MsG0880046715.01.T01:intron 50.0%
ACTGGCACATGCCTAATCCA+AGG - Chr8:77261597-77261616 MsG0880046715.01.T01:intron 50.0%
AGAGAGAGAGAGTTGGGGTT+GGG - Chr8:77261377-77261396 MsG0880046715.01.T01:intron 50.0%
CGTGGATTCTGCAGTAAGGA+GGG - Chr8:77261467-77261486 MsG0880046715.01.T01:intron 50.0%
GACACGTGGATTCTGCAGTA+AGG - Chr8:77261463-77261482 MsG0880046715.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - Chr8:77261370-77261389 MsG0880046715.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGTTG+GGG - Chr8:77261372-77261391 MsG0880046715.01.T01:intron 50.0%
GATTAGGCATGTGCCAGTGT+CGG + Chr8:77261595-77261614 None:intergenic 50.0%
GCATGTAGAGAGAAGACACG+TGG - Chr8:77261449-77261468 MsG0880046715.01.T01:intron 50.0%
GCCCCCTTACCAACCAAATT+TGG + Chr8:77262928-77262947 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG - Chr8:77261769-77261788 MsG0880046715.01.T01:intron 50.0%
TGGGTCTGTGTGAGTAGACA+AGG - Chr8:77262279-77262298 MsG0880046715.01.T01:intron 50.0%
TTAGCAGGATCGAACGACGT+CGG + Chr8:77260732-77260751 None:intergenic 50.0%
! GCTGGTGCTTTTCTTCATGG+AGG - Chr8:77261067-77261086 MsG0880046715.01.T01:intron 50.0%
!! TCTCTGAGGCTACTGGAGAT+TGG - Chr8:77262227-77262246 MsG0880046715.01.T01:intron 50.0%
GAGAGAGAGAGAGTTGGGGT+TGG - Chr8:77261376-77261395 MsG0880046715.01.T01:intron 55.0%
GAGAGAGAGAGTTGGGGTTG+GGG - Chr8:77261378-77261397 MsG0880046715.01.T01:intron 55.0%
GATCTCGGTCAATTCCGCCA+TGG - Chr8:77260704-77260723 MsG0880046715.01.T01:intron 55.0%
GCGGCTATACTGGCACCATA+TGG + Chr8:77262426-77262445 None:intergenic 55.0%
GTTGGGGTGGCACCTATAGT+AGG - Chr8:77261394-77261413 MsG0880046715.01.T01:intron 55.0%
AGAGAGAGTTGGGGTTGGGG+TGG - Chr8:77261381-77261400 MsG0880046715.01.T01:intron 60.0%
ATCGAACGACGTCGGCGCCA+TGG + Chr8:77260724-77260743 None:intergenic 65.0%
! ACACGCGTCGGTGTCCGACA+CGG + Chr8:77261572-77261591 None:intergenic 65.0%
! TGCCAGTGTCGGACACGCGT+CGG + Chr8:77261584-77261603 None:intergenic 65.0%
CACCGACGCGTGTCCGACAC+TGG - Chr8:77261579-77261598 MsG0880046715.01.T01:intron 70.0%
GAACGACGTCGGCGCCATGG+CGG + Chr8:77260721-77260740 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 77260283 77263855 77260283 ID=MsG0880046715.01;
Chr8 mRNA 77260283 77263855 77260283 ID=MsG0880046715.01.T01;Parent=MsG0880046715.01
Chr8 exon 77260283 77260394 77260283 ID=MsG0880046715.01.T01.exon;Parent=MsG0880046715.01.T01
Chr8 CDS 77260364 77260394 77260364 ID=MsG0880046715.01.T01.cds;Parent=MsG0880046715.01.T01
Chr8 CDS 77263040 77263130 77263040 ID=MsG0880046715.01.T01.cds;Parent=MsG0880046715.01.T01
Chr8 exon 77263040 77263130 77263040 ID=MsG0880046715.01.T01.exon;Parent=MsG0880046715.01.T01
Chr8 CDS 77263220 77263302 77263220 ID=MsG0880046715.01.T01.cds;Parent=MsG0880046715.01.T01
Chr8 exon 77263220 77263302 77263220 ID=MsG0880046715.01.T01.exon;Parent=MsG0880046715.01.T01
Chr8 CDS 77263384 77263415 77263384 ID=MsG0880046715.01.T01.cds;Parent=MsG0880046715.01.T01
Chr8 exon 77263384 77263855 77263384 ID=MsG0880046715.01.T01.exon;Parent=MsG0880046715.01.T01
Gene Sequence

>MsG0880046715.01.T01

ATGGCGCCGACGTCGTTCGATCCTGCTAACATAGAACCCGTTGCAAGAAGGAAGAACAATGGTCCTCCTCTCAAGTTCCTTTTTCCTCTCATATATGCTCCTGTTCTCCCTCTAATTCGTTTGGGGTTGCGGCATAAACCTGTTTTGAGAGATCGTTTGTTTACAGCTGTCTTGGCTGGTGCTTTTCTTCATGGAGGCTATCTTGTATCAGATTTGTATGATGCTGAGAGCAAATGA
Protein sequence

>MsG0880046715.01.T01

MAPTSFDPANIEPVARRKNNGPPLKFLFPLIYAPVLPLIRLGLRHKPVLRDRLFTAVLAGAFLHGGYLVSDLYDAESK*