AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047150.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047150.01.T01 MTR_1g032030 89.552 67 6 1 18 83 15 81 4.02e-22 89.7
MsG0880047150.01.T01 MTR_1g032370 89.552 67 6 1 18 83 15 81 4.02e-22 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047150.01.T01 AT5G49400 73.944 142 22 3 1 129 1 140 3.10e-53 174

Find 88 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACACATCTGGCCTCAATTT+AGG 0.169557 8:-82701886 None:intergenic
ATCTTTAACGTTTGACTTCA+TGG 0.197202 8:+82702498 MsG0880047150.01.T01:three_prime_UTR
GAATCATCTGATTCAGATTC+TGG 0.210758 8:+82702228 MsG0880047150.01.T01:CDS
ATCTGATTATTCTTCTAGTT+CGG 0.261244 8:+82702086 MsG0880047150.01.T01:CDS
ACACATCTGGCCTCAATTTA+GGG 0.271076 8:-82701885 None:intergenic
AGCCGCAGTTGCTGCTCTTT+CGG 0.288446 8:-82701599 None:intergenic
TACTGAGAAAGCTGTTAAAT+TGG 0.291730 8:+82701714 MsG0880047150.01.T01:CDS
CCACTCTGCCTTATCGCATT+TGG 0.312072 8:+82701150 MsG0880047150.01.T01:five_prime_UTR
TAGTAAGAAGGAAGAGATTA+AGG 0.323676 8:+82701534 MsG0880047150.01.T01:CDS
TCTGATTATTCTTCTAGTTC+GGG 0.339870 8:+82702087 MsG0880047150.01.T01:CDS
GATGAATTTCTCGGAGTTGC+CGG 0.354312 8:-82701214 None:intergenic
TCCAAGAGGAAGTATGATTC+AGG 0.361886 8:+82702000 MsG0880047150.01.T01:CDS
AAGCTTATTCTACATTATAT+CGG 0.376503 8:-82702402 None:intergenic
GTGATGCTTAAGCAGTTAGA+TGG 0.380998 8:+82702540 MsG0880047150.01.T01:three_prime_UTR
CCATCGACAGTCGACATTGT+AGG 0.383189 8:-82701757 None:intergenic
ATGAGCGAGTTTATATTTCA+AGG 0.408672 8:+82701836 MsG0880047150.01.T01:CDS
TGTGTCTGTGGGTTATGATT+TGG 0.415795 8:+82701903 MsG0880047150.01.T01:CDS
CTAGCAGATGGCAGGAGAAA+AGG 0.416419 8:+82701662 MsG0880047150.01.T01:CDS
CTCTGATTCAGAGGATGAGC+TGG 0.446364 8:-82702112 None:intergenic
CAGCATTAACTGCTGCCAAA+GGG 0.453514 8:+82701560 MsG0880047150.01.T01:CDS
AATAAGCTTTGCTAGATGCC+TGG 0.456329 8:+82702416 MsG0880047150.01.T01:three_prime_UTR
TAGCAGATGGCAGGAGAAAA+GGG 0.460886 8:+82701663 MsG0880047150.01.T01:CDS
CGGAGACGTTGAATGGTGTA+TGG 0.470479 8:+82702303 MsG0880047150.01.T01:exon
ACTGAGAAAGCTGTTAAATT+GGG 0.471361 8:+82701715 MsG0880047150.01.T01:CDS
GCAGCATTAACTGCTGCCAA+AGG 0.478872 8:+82701559 MsG0880047150.01.T01:CDS
CGAAAATGATGAACTTCGGC+GGG 0.481154 8:-82701191 None:intergenic
TCTTTCTTCCTCTGATTCAG+AGG 0.483023 8:-82702121 None:intergenic
TCAGTGTTTGAGACCGATAG+TGG 0.483942 8:+82702039 MsG0880047150.01.T01:CDS
GAGCGACTCCAAATGCGATA+AGG 0.488521 8:-82701158 None:intergenic
ACCTGAATCATACTTCCTCT+TGG 0.488586 8:-82702001 None:intergenic
TCATAACCCACAGACACATC+TGG 0.498000 8:-82701898 None:intergenic
TGTTAAATTGGGTGAAAGGA+AGG 0.511428 8:+82701726 MsG0880047150.01.T01:CDS
AGTGTTACCAGGGTGGGCAC+TGG 0.514214 8:+82701797 MsG0880047150.01.T01:CDS
TGTATATTCTCAATTTATGC+GGG 0.515270 8:+82702652 MsG0880047150.01.T01:three_prime_UTR
TCGTGATGTGAAGGAGGAAA+AGG 0.516783 8:+82701957 MsG0880047150.01.T01:CDS
TTGAGCACGACTAAGCCCTT+TGG 0.517177 8:-82701575 None:intergenic
ATAAGCTTTGCTAGATGCCT+GGG 0.518000 8:+82702417 MsG0880047150.01.T01:three_prime_UTR
CAGTGGATCATCGTCTGCCA+CGG 0.518690 8:+82702062 MsG0880047150.01.T01:CDS
GCAGTGTCAGAAGTGTTACC+AGG 0.520961 8:+82701786 MsG0880047150.01.T01:CDS
CTCCGAGAAATTCATCATCC+AGG 0.521411 8:+82701221 MsG0880047150.01.T01:five_prime_UTR
GCATAGTCGGAGACGTTGAA+TGG 0.522503 8:+82702296 MsG0880047150.01.T01:exon
AACTTCGGCGGGGTTGAGAT+CGG 0.527306 8:-82701180 None:intergenic
GCGTATGGTCAGAAGGAAGA+AGG 0.528077 8:+82701637 MsG0880047150.01.T01:CDS
CGATGATCCACTGCCACTAT+CGG 0.530022 8:-82702052 None:intergenic
TTAACGTTTGACTTCATGGA+TGG 0.532606 8:+82702502 MsG0880047150.01.T01:three_prime_UTR
GCGCGAAATGTTAACGCGTA+TGG 0.534367 8:+82701622 MsG0880047150.01.T01:CDS
GTATGGAGCAGCTAAGAGTT+TGG 0.536067 8:+82702320 MsG0880047150.01.T01:three_prime_UTR
AAACTTAATGATTGTATCTG+TGG 0.539506 8:-82702376 None:intergenic
GGAGAAAGAAGAGGCATAGT+CGG 0.539953 8:+82702283 MsG0880047150.01.T01:CDS
TAAAGATAAGATCAAACCTC+AGG 0.541145 8:-82702482 None:intergenic
AAGCTGTTAAATTGGGTGAA+AGG 0.542301 8:+82701722 MsG0880047150.01.T01:CDS
GAACATGTCGAGTAGTAAGA+AGG 0.543783 8:+82701522 MsG0880047150.01.T01:intron
TGTTAACGCGTATGGTCAGA+AGG 0.552640 8:+82701630 MsG0880047150.01.T01:CDS
AGTGGATCATCGTCTGCCAC+GGG 0.553302 8:+82702063 MsG0880047150.01.T01:CDS
AGAAGGGCCTAGCAGATGGC+AGG 0.555494 8:+82701654 MsG0880047150.01.T01:CDS
TTGTATATTCTCAATTTATG+CGG 0.555705 8:+82702651 MsG0880047150.01.T01:three_prime_UTR
GCGATAAGGCAGAGTGGCAG+CGG 0.555837 8:-82701144 None:intergenic
TTAAGTTGCTGAGTCCTCGA+TGG 0.557112 8:-82701859 None:intergenic
TTTGAGACCGATAGTGGCAG+TGG 0.557910 8:+82702045 MsG0880047150.01.T01:CDS
CAGCTCATCCTCTGAATCAG+AGG 0.567124 8:+82702113 MsG0880047150.01.T01:CDS
AACCTGGATGATGAATTTCT+CGG 0.571386 8:-82701223 None:intergenic
AGGAAGAAGGGCCTAGCAGA+TGG 0.572751 8:+82701650 MsG0880047150.01.T01:CDS
ATTCTGATGATAAAAGCAGC+AGG 0.581802 8:+82702262 MsG0880047150.01.T01:CDS
TAATAATCATCGTGATGTGA+AGG 0.585747 8:+82701948 MsG0880047150.01.T01:CDS
TGATTCAGGTAGTAATAGTG+AGG 0.590078 8:+82702014 MsG0880047150.01.T01:CDS
AGGAGAAAAGGGAGGCGAAG+AGG 0.596956 8:+82701674 MsG0880047150.01.T01:CDS
AATCAGAGGAAGAAAGAAGA+CGG 0.599944 8:+82702127 MsG0880047150.01.T01:CDS
GTCAGAAGTGTTACCAGGGT+GGG 0.604446 8:+82701791 MsG0880047150.01.T01:CDS
CAGACTAAGAAGAAGAGCAA+AGG 0.608854 8:+82702177 MsG0880047150.01.T01:CDS
TAATCATCGTGATGTGAAGG+AGG 0.609023 8:+82701951 MsG0880047150.01.T01:CDS
CGTATGGTCAGAAGGAAGAA+GGG 0.609566 8:+82701638 MsG0880047150.01.T01:CDS
GCGAAAATGATGAACTTCGG+CGG 0.614836 8:-82701192 None:intergenic
AGCCGAAAGAGCAGCAACTG+CGG 0.616543 8:+82701597 MsG0880047150.01.T01:CDS
CCGGCGAAAATGATGAACTT+CGG 0.620771 8:-82701195 None:intergenic
CCTACAATGTCGACTGTCGA+TGG 0.624864 8:+82701757 MsG0880047150.01.T01:CDS
TGTTATGCTGAAGATACCTG+AGG 0.630164 8:+82702466 MsG0880047150.01.T01:three_prime_UTR
ATTGAGGCCAGATGTGTCTG+TGG 0.651230 8:+82701891 MsG0880047150.01.T01:CDS
AAAGCAGCAGGAGAAAGAAG+AGG 0.653056 8:+82702274 MsG0880047150.01.T01:CDS
GAAATGTCCAGTGCCCACCC+TGG 0.658551 8:-82701804 None:intergenic
TGTCAGAAGTGTTACCAGGG+TGG 0.665235 8:+82701790 MsG0880047150.01.T01:CDS
CAGTGTCAGAAGTGTTACCA+GGG 0.669839 8:+82701787 MsG0880047150.01.T01:CDS
AGAAGAATAATCAGATCCCG+TGG 0.674048 8:-82702079 None:intergenic
AAAGAAAATACGTACAACCC+AGG 0.684099 8:-82702434 None:intergenic
TTTATATTTCAAGGCCATCG+AGG 0.695005 8:+82701845 MsG0880047150.01.T01:CDS
TTGAGGCCAGATGTGTCTGT+GGG 0.707588 8:+82701892 MsG0880047150.01.T01:CDS
CCAAATGCGATAAGGCAGAG+TGG 0.721486 8:-82701150 None:intergenic
GAAAATGATGAACTTCGGCG+GGG 0.727964 8:-82701190 None:intergenic
CAGATGGCAGGAGAAAAGGG+AGG 0.762274 8:+82701666 MsG0880047150.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAACATTACTAATCAAA+TGG + Chr8:82701395-82701414 MsG0880047150.01.T01:intron 15.0%
!!! TTTTCAATAATCAATAGTAT+TGG - Chr8:82701436-82701455 None:intergenic 15.0%
!! AAGCTTATTCTACATTATAT+CGG - Chr8:82702405-82702424 None:intergenic 20.0%
!! ATCTAACAAGAAAATTAATG+TGG - Chr8:82701368-82701387 None:intergenic 20.0%
!! TTGTATATTCTCAATTTATG+CGG + Chr8:82702651-82702670 MsG0880047150.01.T01:three_prime_UTR 20.0%
! AAACTTAATGATTGTATCTG+TGG - Chr8:82702379-82702398 None:intergenic 25.0%
! AACTTAAAAACCCTAAATTG+AGG + Chr8:82701875-82701894 MsG0880047150.01.T01:CDS 25.0%
! CTATTTCAAATGTGAAAATC+TGG - Chr8:82701503-82701522 None:intergenic 25.0%
! TAACATTACTAATCAAATGG+TGG + Chr8:82701398-82701417 MsG0880047150.01.T01:intron 25.0%
! TGTATATTCTCAATTTATGC+GGG + Chr8:82702652-82702671 MsG0880047150.01.T01:three_prime_UTR 25.0%
!! ATCTGATTATTCTTCTAGTT+CGG + Chr8:82702086-82702105 MsG0880047150.01.T01:CDS 25.0%
!!! TTTCGATTTTGTTGATTTGA+CGG - Chr8:82701124-82701143 None:intergenic 25.0%
ACTGAGAAAGCTGTTAAATT+GGG + Chr8:82701715-82701734 MsG0880047150.01.T01:CDS 30.0%
ATGAGCGAGTTTATATTTCA+AGG + Chr8:82701836-82701855 MsG0880047150.01.T01:CDS 30.0%
TAAAGATAAGATCAAACCTC+AGG - Chr8:82702485-82702504 None:intergenic 30.0%
TAATAATCATCGTGATGTGA+AGG + Chr8:82701948-82701967 MsG0880047150.01.T01:CDS 30.0%
TACTGAGAAAGCTGTTAAAT+TGG + Chr8:82701714-82701733 MsG0880047150.01.T01:CDS 30.0%
TAGTAAGAAGGAAGAGATTA+AGG + Chr8:82701534-82701553 MsG0880047150.01.T01:CDS 30.0%
! ATCTTTAACGTTTGACTTCA+TGG + Chr8:82702498-82702517 MsG0880047150.01.T01:three_prime_UTR 30.0%
!! TCTGATTATTCTTCTAGTTC+GGG + Chr8:82702087-82702106 MsG0880047150.01.T01:CDS 30.0%
AAAGAAAATACGTACAACCC+AGG - Chr8:82702437-82702456 None:intergenic 35.0%
AACCTGGATGATGAATTTCT+CGG - Chr8:82701226-82701245 None:intergenic 35.0%
AAGCTGTTAAATTGGGTGAA+AGG + Chr8:82701722-82701741 MsG0880047150.01.T01:CDS 35.0%
AATCAGAGGAAGAAAGAAGA+CGG + Chr8:82702127-82702146 MsG0880047150.01.T01:CDS 35.0%
ATTCTGATGATAAAAGCAGC+AGG + Chr8:82702262-82702281 MsG0880047150.01.T01:CDS 35.0%
GAATCATCTGATTCAGATTC+TGG + Chr8:82702228-82702247 MsG0880047150.01.T01:CDS 35.0%
TGATTCAGGTAGTAATAGTG+AGG + Chr8:82702014-82702033 MsG0880047150.01.T01:CDS 35.0%
TGTTAAATTGGGTGAAAGGA+AGG + Chr8:82701726-82701745 MsG0880047150.01.T01:CDS 35.0%
TTTATATTTCAAGGCCATCG+AGG + Chr8:82701845-82701864 MsG0880047150.01.T01:CDS 35.0%
! TAAAGGAAGGTATAAGGAGA+GGG - Chr8:82701274-82701293 None:intergenic 35.0%
! TTAACGTTTGACTTCATGGA+TGG + Chr8:82702502-82702521 MsG0880047150.01.T01:three_prime_UTR 35.0%
AATAAGCTTTGCTAGATGCC+TGG + Chr8:82702416-82702435 MsG0880047150.01.T01:three_prime_UTR 40.0%
ACACATCTGGCCTCAATTTA+GGG - Chr8:82701888-82701907 None:intergenic 40.0%
ACCTGAATCATACTTCCTCT+TGG - Chr8:82702004-82702023 None:intergenic 40.0%
AGAAGAATAATCAGATCCCG+TGG - Chr8:82702082-82702101 None:intergenic 40.0%
AGAAGAGCAAAGGAAAAAGC+AGG + Chr8:82702187-82702206 MsG0880047150.01.T01:CDS 40.0%
ATAAGCTTTGCTAGATGCCT+GGG + Chr8:82702417-82702436 MsG0880047150.01.T01:three_prime_UTR 40.0%
ATTAATGTGGAATCGCAGTG+CGG - Chr8:82701355-82701374 None:intergenic 40.0%
CAGACTAAGAAGAAGAGCAA+AGG + Chr8:82702177-82702196 MsG0880047150.01.T01:CDS 40.0%
GAACATGTCGAGTAGTAAGA+AGG + Chr8:82701522-82701541 MsG0880047150.01.T01:intron 40.0%
GAAGGAAGATAGGAATAGAG+AGG - Chr8:82701251-82701270 None:intergenic 40.0%
GTGATGCTTAAGCAGTTAGA+TGG + Chr8:82702540-82702559 MsG0880047150.01.T01:three_prime_UTR 40.0%
TAATCATCGTGATGTGAAGG+AGG + Chr8:82701951-82701970 MsG0880047150.01.T01:CDS 40.0%
TAGGAATAGAGAGGAAAACC+TGG - Chr8:82701242-82701261 None:intergenic 40.0%
TCTTTCTTCCTCTGATTCAG+AGG - Chr8:82702124-82702143 None:intergenic 40.0%
TGAGTTCGAAAAAGTCCAAG+AGG + Chr8:82701986-82702005 MsG0880047150.01.T01:CDS 40.0%
TGTTATGCTGAAGATACCTG+AGG + Chr8:82702466-82702485 MsG0880047150.01.T01:three_prime_UTR 40.0%
! AAAGGAAGGTATAAGGAGAG+GGG - Chr8:82701273-82701292 None:intergenic 40.0%
! CTAAAGGAAGGTATAAGGAG+AGG - Chr8:82701275-82701294 None:intergenic 40.0%
! TCCAAGAGGAAGTATGATTC+AGG + Chr8:82702000-82702019 MsG0880047150.01.T01:CDS 40.0%
! TGTGTCTGTGGGTTATGATT+TGG + Chr8:82701903-82701922 MsG0880047150.01.T01:CDS 40.0%
!! TAGTTTTCGAGCAGGATTGA+TGG + Chr8:82702347-82702366 MsG0880047150.01.T01:three_prime_UTR 40.0%
!!! GGACTTTTTCGAACTCACTT+TGG - Chr8:82701983-82702002 None:intergenic 40.0%
AAAGCAGCAGGAGAAAGAAG+AGG + Chr8:82702274-82702293 MsG0880047150.01.T01:CDS 45.0%
AGAGCAAAGGAAAAAGCAGG+AGG + Chr8:82702190-82702209 MsG0880047150.01.T01:CDS 45.0%
CAGCATTAACTGCTGCCAAA+GGG + Chr8:82701560-82701579 MsG0880047150.01.T01:CDS 45.0%
CCGGCGAAAATGATGAACTT+CGG - Chr8:82701198-82701217 None:intergenic 45.0%
CGAAAATGATGAACTTCGGC+GGG - Chr8:82701194-82701213 None:intergenic 45.0%
CGTATGGTCAGAAGGAAGAA+GGG + Chr8:82701638-82701657 MsG0880047150.01.T01:CDS 45.0%
CTCCGAGAAATTCATCATCC+AGG + Chr8:82701221-82701240 MsG0880047150.01.T01:five_prime_UTR 45.0%
GAAAATGATGAACTTCGGCG+GGG - Chr8:82701193-82701212 None:intergenic 45.0%
GACACATCTGGCCTCAATTT+AGG - Chr8:82701889-82701908 None:intergenic 45.0%
GATGAATTTCTCGGAGTTGC+CGG - Chr8:82701217-82701236 None:intergenic 45.0%
GCGAAAATGATGAACTTCGG+CGG - Chr8:82701195-82701214 None:intergenic 45.0%
GTATGGAGCAGCTAAGAGTT+TGG + Chr8:82702320-82702339 MsG0880047150.01.T01:three_prime_UTR 45.0%
TAGCAGATGGCAGGAGAAAA+GGG + Chr8:82701663-82701682 MsG0880047150.01.T01:CDS 45.0%
TCATAACCCACAGACACATC+TGG - Chr8:82701901-82701920 None:intergenic 45.0%
TCGTGATGTGAAGGAGGAAA+AGG + Chr8:82701957-82701976 MsG0880047150.01.T01:CDS 45.0%
TGTTAACGCGTATGGTCAGA+AGG + Chr8:82701630-82701649 MsG0880047150.01.T01:CDS 45.0%
! CCGAAGTTCATCATTTTCGC+CGG + Chr8:82701195-82701214 MsG0880047150.01.T01:five_prime_UTR 45.0%
! GCGAGCTAAAGGAAGGTATA+AGG - Chr8:82701280-82701299 None:intergenic 45.0%
! GGAGAAAGAAGAGGCATAGT+CGG + Chr8:82702283-82702302 MsG0880047150.01.T01:CDS 45.0%
! TCAGTGTTTGAGACCGATAG+TGG + Chr8:82702039-82702058 MsG0880047150.01.T01:CDS 45.0%
! TTAAGTTGCTGAGTCCTCGA+TGG - Chr8:82701862-82701881 None:intergenic 45.0%
!! CAGTGTCAGAAGTGTTACCA+GGG + Chr8:82701787-82701806 MsG0880047150.01.T01:CDS 45.0%
!! TTGGTGAGTAGTTTTCGAGC+AGG + Chr8:82702339-82702358 MsG0880047150.01.T01:three_prime_UTR 45.0%
AAGGAGAGGGGAAGGAAGAT+AGG - Chr8:82701261-82701280 None:intergenic 50.0%
ATTGAGGCCAGATGTGTCTG+TGG + Chr8:82701891-82701910 MsG0880047150.01.T01:CDS 50.0%
CAGCTCATCCTCTGAATCAG+AGG + Chr8:82702113-82702132 MsG0880047150.01.T01:CDS 50.0%
CCAAATGCGATAAGGCAGAG+TGG - Chr8:82701153-82701172 None:intergenic 50.0%
CCACTCTGCCTTATCGCATT+TGG + Chr8:82701150-82701169 MsG0880047150.01.T01:five_prime_UTR 50.0%
CCATCGACAGTCGACATTGT+AGG - Chr8:82701760-82701779 None:intergenic 50.0%
CGATGATCCACTGCCACTAT+CGG - Chr8:82702055-82702074 None:intergenic 50.0%
CGGAGACGTTGAATGGTGTA+TGG + Chr8:82702303-82702322 MsG0880047150.01.T01:exon 50.0%
CTAGCAGATGGCAGGAGAAA+AGG + Chr8:82701662-82701681 MsG0880047150.01.T01:CDS 50.0%
CTCTGATTCAGAGGATGAGC+TGG - Chr8:82702115-82702134 None:intergenic 50.0%
GAGCGACTCCAAATGCGATA+AGG - Chr8:82701161-82701180 None:intergenic 50.0%
GCAGCATTAACTGCTGCCAA+AGG + Chr8:82701559-82701578 MsG0880047150.01.T01:CDS 50.0%
GCATAGTCGGAGACGTTGAA+TGG + Chr8:82702296-82702315 MsG0880047150.01.T01:exon 50.0%
GCGCGAAATGTTAACGCGTA+TGG + Chr8:82701622-82701641 MsG0880047150.01.T01:CDS 50.0%
GCGTATGGTCAGAAGGAAGA+AGG + Chr8:82701637-82701656 MsG0880047150.01.T01:CDS 50.0%
TGAACCCTAGTGCGAGCTAA+AGG - Chr8:82701291-82701310 None:intergenic 50.0%
TGAATTGCGTCGCAGCAGAT+CGG + Chr8:82701320-82701339 MsG0880047150.01.T01:intron 50.0%
TTGAGCACGACTAAGCCCTT+TGG - Chr8:82701578-82701597 None:intergenic 50.0%
TTGAGGCCAGATGTGTCTGT+GGG + Chr8:82701892-82701911 MsG0880047150.01.T01:CDS 50.0%
! ACCTTCCTTTAGCTCGCACT+AGG + Chr8:82701283-82701302 MsG0880047150.01.T01:intron 50.0%
! CCTACAATGTCGACTGTCGA+TGG + Chr8:82701757-82701776 MsG0880047150.01.T01:CDS 50.0%
! CCTTCCTTTAGCTCGCACTA+GGG + Chr8:82701284-82701303 MsG0880047150.01.T01:intron 50.0%
! CTTTTCTCCTGCCATCTGCT+AGG - Chr8:82701664-82701683 None:intergenic 50.0%
! GAAGGTATAAGGAGAGGGGA+AGG - Chr8:82701269-82701288 None:intergenic 50.0%
! TTTGAGACCGATAGTGGCAG+TGG + Chr8:82702045-82702064 MsG0880047150.01.T01:CDS 50.0%
!! GCAGTGTCAGAAGTGTTACC+AGG + Chr8:82701786-82701805 MsG0880047150.01.T01:CDS 50.0%
!! GTCAGAAGTGTTACCAGGGT+GGG + Chr8:82701791-82701810 MsG0880047150.01.T01:CDS 50.0%
!! TGTCAGAAGTGTTACCAGGG+TGG + Chr8:82701790-82701809 MsG0880047150.01.T01:CDS 50.0%
AACTTCGGCGGGGTTGAGAT+CGG - Chr8:82701183-82701202 None:intergenic 55.0%
AGCCGAAAGAGCAGCAACTG+CGG + Chr8:82701597-82701616 MsG0880047150.01.T01:CDS 55.0%
AGCCGCAGTTGCTGCTCTTT+CGG - Chr8:82701602-82701621 None:intergenic 55.0%
AGGAAGAAGGGCCTAGCAGA+TGG + Chr8:82701650-82701669 MsG0880047150.01.T01:CDS 55.0%
AGGAGAAAAGGGAGGCGAAG+AGG + Chr8:82701674-82701693 MsG0880047150.01.T01:CDS 55.0%
AGTGGATCATCGTCTGCCAC+GGG + Chr8:82702063-82702082 MsG0880047150.01.T01:CDS 55.0%
CAGATGGCAGGAGAAAAGGG+AGG + Chr8:82701666-82701685 MsG0880047150.01.T01:CDS 55.0%
CAGTGGATCATCGTCTGCCA+CGG + Chr8:82702062-82702081 MsG0880047150.01.T01:CDS 55.0%
CCCTAGTGCGAGCTAAAGGA+AGG - Chr8:82701287-82701306 None:intergenic 55.0%
AGAAGGGCCTAGCAGATGGC+AGG + Chr8:82701654-82701673 MsG0880047150.01.T01:CDS 60.0%
AGTGTTACCAGGGTGGGCAC+TGG + Chr8:82701797-82701816 MsG0880047150.01.T01:CDS 60.0%
GAAATGTCCAGTGCCCACCC+TGG - Chr8:82701807-82701826 None:intergenic 60.0%
GCGATAAGGCAGAGTGGCAG+CGG - Chr8:82701147-82701166 None:intergenic 60.0%
TGTGGAATCGCAGTGCGGAG+TGG - Chr8:82701350-82701369 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 82701114 82702711 82701114 ID=MsG0880047150.01;Name=MsG0880047150.01
Chr8 mRNA 82701114 82702711 82701114 ID=MsG0880047150.01.T01;Parent=MsG0880047150.01;Name=MsG0880047150.01.T01;_AED=0.27;_eAED=0.27;_QI=129|0|0.5|1|0|0.5|2|397|262
Chr8 exon 82701114 82701242 82701114 ID=MsG0880047150.01.T01:exon:20419;Parent=MsG0880047150.01.T01
Chr8 exon 82701526 82702711 82701526 ID=MsG0880047150.01.T01:exon:20420;Parent=MsG0880047150.01.T01
Chr8 five_prime_UTR 82701114 82701242 82701114 ID=MsG0880047150.01.T01:five_prime_utr;Parent=MsG0880047150.01.T01
Chr8 CDS 82701526 82702314 82701526 ID=MsG0880047150.01.T01:cds;Parent=MsG0880047150.01.T01
Chr8 three_prime_UTR 82702315 82702711 82702315 ID=MsG0880047150.01.T01:three_prime_utr;Parent=MsG0880047150.01.T01
Gene Sequence

>MsG0880047150.01.T01

ATGTCGAGTAGTAAGAAGGAAGAGATTAAGGCTGCAGCATTAACTGCTGCCAAAGGGCTTAGTCGTGCTCAAGCCGAAAGAGCAGCAACTGCGGCTGCGCGAAATGTTAACGCGTATGGTCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAGGCGAAGAGGCAGATGTATTTGATGAGTACTGAGAAAGCTGTTAAATTGGGTGAAAGGAAGGATGTCAAGCCTACAATGTCGACTGTCGATGGTAATGCGCAGTGTCAGAAGTGTTACCAGGGTGGGCACTGGACATTTCAGTGTAAGAATGAGCGAGTTTATATTTCAAGGCCATCGAGGACTCAGCAACTTAAAAACCCTAAATTGAGGCCAGATGTGTCTGTGGGTTATGATTTGGATGATAATAATAATAATAATAATAATAATCATCGTGATGTGAAGGAGGAAAAGGCCAAAGTGAGTTCGAAAAAGTCCAAGAGGAAGTATGATTCAGGTAGTAATAGTGAGGATTCAGTGTTTGAGACCGATAGTGGCAGTGGATCATCGTCTGCCACGGGATCTGATTATTCTTCTAGTTCGGGTTCCAGCTCATCCTCTGAATCAGAGGAAGAAAGAAGACGGAAGAAGAAGAAGAGTCAGAAGAAGAAGCAGACTAAGAAGAAGAGCAAAGGAAAAAGCAGGAGGTACAGTACATCATCTGAATCATCTGATTCAGATTCTGGTTCAGACTCTGATTCTGATGATAAAAGCAGCAGGAGAAAGAAGAGGCATAGTCGGAGACGTTGA
Protein sequence

>MsG0880047150.01.T01

MSSSKKEEIKAAALTAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVKLGERKDVKPTMSTVDGNAQCQKCYQGGHWTFQCKNERVYISRPSRTQQLKNPKLRPDVSVGYDLDDNNNNNNNNHRDVKEEKAKVSSKKSKRKYDSGSNSEDSVFETDSGSGSSSATGSDYSSSSGSSSSSESEEERRRKKKKSQKKKQTKKKSKGKSRRYSTSSESSDSDSGSDSDSDDKSSRRKKRHSRRR*