AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016204.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016204.01.T01 MTR_3g085590 85.714 406 27 3 1 401 1 380 0.0 662
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016204.01.T01 AT1G24310 68.990 287 66 1 105 391 107 370 2.99e-140 405

Find 129 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACCTTAAAAGCGTATT+TGG 0.127759 3:-80415316 None:intergenic
CAGACTTTGATCGTGAATTT+TGG 0.193440 3:-80418957 None:intergenic
TGGTAACTCAGCTCATCTTC+TGG 0.215937 3:+80418928 MsG0380016204.01.T01:CDS
CTATCACCTTCTACTGGTTT+TGG 0.235625 3:+80415054 MsG0380016204.01.T01:CDS
TATCTGCTTGAAAATGTCTT+TGG 0.301845 3:-80418492 None:intergenic
TTTGTTGCTGCTGCTGTTGT+TGG 0.303851 3:-80415017 None:intergenic
GAAGCGAGACGCACGGGATA+TGG 0.316915 3:+80419198 MsG0380016204.01.T01:CDS
AAAACCTTAAAAGCGTATTT+GGG 0.319798 3:-80415315 None:intergenic
CAATCTTCATCTTCCCTCTT+CGG 0.322179 3:+80414818 MsG0380016204.01.T01:CDS
TTTGTCCATGTATCATGATT+TGG 0.323361 3:+80419328 MsG0380016204.01.T01:three_prime_UTR
AACCCAAAGCAATGTTAAAA+TGG 0.323703 3:+80418374 MsG0380016204.01.T01:CDS
GTGTAACAGACCCACAGTTT+AGG 0.324603 3:+80415961 MsG0380016204.01.T01:CDS
GACATGGGAACCTCAGAAAA+TGG 0.331518 3:+80419238 MsG0380016204.01.T01:CDS
CTACTTCCTGTTCTGTTGCT+TGG 0.335830 3:+80418793 MsG0380016204.01.T01:CDS
TTGAGTAGTCAATTGAGAAT+TGG 0.345156 3:-80415116 None:intergenic
GGTAACTCAGCTCATCTTCT+GGG 0.368462 3:+80418929 MsG0380016204.01.T01:CDS
CCTTCTTCAACTCCCGCTTT+TGG 0.369276 3:+80414923 MsG0380016204.01.T01:CDS
GGATCTTTCCCAACGCCTTA+AGG 0.376166 3:+80416196 MsG0380016204.01.T01:CDS
TGTAACAGACCCACAGTTTA+GGG 0.381508 3:+80415962 MsG0380016204.01.T01:CDS
GCTTCTTCTACACCCGCTTT+CGG 0.390655 3:+80414947 MsG0380016204.01.T01:CDS
GAATGTAGGAAGATTCAAAT+AGG 0.392916 3:-80419436 None:intergenic
AATCTTCATCTTCCCTCTTC+GGG 0.396928 3:+80414819 MsG0380016204.01.T01:CDS
AAGGCTAATAGCAATGGATT+TGG 0.408263 3:+80418908 MsG0380016204.01.T01:CDS
GATCATGTGGGCGGAAGCTA+TGG 0.409669 3:+80416106 MsG0380016204.01.T01:intron
CTGGAGCGGAATTATCTAGA+AGG 0.413522 3:+80418855 MsG0380016204.01.T01:CDS
GTGCTGATAGAGAACGTCTT+TGG 0.413609 3:+80416150 MsG0380016204.01.T01:CDS
TTCCTGTTCTGTTGCTTGGA+TGG 0.417857 3:+80418797 MsG0380016204.01.T01:CDS
AACGGCGAAGGTTGCGGCGC+CGG 0.423275 3:-80415092 None:intergenic
GCATTCGGCACTCCAACTTT+CGG 0.423472 3:+80414854 MsG0380016204.01.T01:CDS
GAAGAAGGGGTACCGAAGCC+TGG 0.427369 3:-80414908 None:intergenic
TAGGCCACAAACATCGCAAA+TGG 0.427930 3:-80419417 None:intergenic
GAATCTTCCTACATTCTTGA+AGG 0.428611 3:+80419443 MsG0380016204.01.T01:three_prime_UTR
TTGTTGCTGCTGCTGTTGTT+GGG 0.433813 3:-80415016 None:intergenic
TGCCGTATTCCATTAACAAA+AGG 0.445652 3:+80418710 MsG0380016204.01.T01:CDS
GCTTTCAGCACCCCAGGCTT+CGG 0.445658 3:+80414896 MsG0380016204.01.T01:CDS
TCTACACCCGCTTTCGGTGG+TGG 0.448947 3:+80414953 MsG0380016204.01.T01:CDS
TTCTCAATTGACTACTCAAA+TGG 0.449916 3:+80415120 MsG0380016204.01.T01:CDS
GGGACCCCATCTTCAGCATT+CGG 0.452689 3:+80414839 MsG0380016204.01.T01:CDS
GAGAATAGTGGAGGCGTTGG+AGG 0.455797 3:+80418679 MsG0380016204.01.T01:CDS
TGACCCATTTGCGATGTTTG+TGG 0.457218 3:+80419413 MsG0380016204.01.T01:three_prime_UTR
CTGAAACCAAAACCAGTAGA+AGG 0.458949 3:-80415060 None:intergenic
TTCAAGCAGATACTCTTCCT+TGG 0.459845 3:+80418503 MsG0380016204.01.T01:CDS
CTTTGGCCACAACAAGTTCA+AGG 0.461110 3:+80416167 MsG0380016204.01.T01:CDS
ACGCCGCACACCACCATGTT+CGG 0.462481 3:+80414791 MsG0380016204.01.T01:exon
AAGCCTGGGGTGCTGAAAGC+TGG 0.465129 3:-80414893 None:intergenic
CAAAATTCACGATCAAAGTC+TGG 0.467189 3:+80418958 MsG0380016204.01.T01:CDS
TCCGCTAGTGAGAATGGAAC+TGG 0.468365 3:-80415154 None:intergenic
TATGGGGAAGCTTGAGGGTA+TGG 0.469058 3:+80416124 MsG0380016204.01.T01:CDS
TTCCATCCAAGCAACAGAAC+AGG 0.470093 3:-80418799 None:intergenic
CAGTTTAGGGTGAAGCCTGC+TGG 0.475949 3:+80415975 MsG0380016204.01.T01:CDS
TCAAAGTCTGGCTGACCTGC+AGG 0.480292 3:+80418970 MsG0380016204.01.T01:CDS
GATGAGAATAGTGGAGGCGT+TGG 0.481773 3:+80418676 MsG0380016204.01.T01:CDS
TCACGATCCGCTAGTGAGAA+TGG 0.483587 3:-80415160 None:intergenic
GCCGTATTCCATTAACAAAA+GGG 0.485365 3:+80418711 MsG0380016204.01.T01:CDS
ATTGGAAACGGCGAAGGTTG+CGG 0.485544 3:-80415098 None:intergenic
TTTCAACTATCACCTTCTAC+TGG 0.487130 3:+80415048 MsG0380016204.01.T01:CDS
GAAGCTATGGGGAAGCTTGA+GGG 0.490154 3:+80416119 MsG0380016204.01.T01:CDS
CAGAGACAATGACTTCATCT+TGG 0.494474 3:-80418332 None:intergenic
AAGAAGGGGTACCGAAGCCT+GGG 0.499083 3:-80414907 None:intergenic
TTAAAACCTTGAACTTGTTG+TGG 0.500336 3:-80416173 None:intergenic
GTGGAGGCGTTGGAGGGAAA+AGG 0.503729 3:+80418686 MsG0380016204.01.T01:CDS
GCGCTTAAATTTAGCAGTCT+AGG 0.504211 3:-80414696 None:intergenic
CCAAAAGCGGGAGTTGAAGA+AGG 0.506648 3:-80414923 None:intergenic
ACACCAGCTTTCAGCACCCC+AGG 0.510458 3:+80414890 MsG0380016204.01.T01:CDS
TTCTACCTGTCTAGTTATTG+TGG 0.512168 3:-80418759 None:intergenic
AGAGAACGGTGTTGAGAAGA+GGG 0.519091 3:-80414981 None:intergenic
GATTATGATGGCTGAGGACA+TGG 0.520825 3:+80419222 MsG0380016204.01.T01:CDS
TGTTTCAGTCTTTGAATCCA+AGG 0.521920 3:-80418520 None:intergenic
ACAGGTATTGCAGCAGCAGA+TGG 0.527438 3:+80419147 MsG0380016204.01.T01:intron
GATTCTTATAAAGAAGATGC+TGG 0.529366 3:+80415288 MsG0380016204.01.T01:CDS
AATCTTCCTACATTCTTGAA+GGG 0.531796 3:+80419444 MsG0380016204.01.T01:three_prime_UTR
GGTAGAATCTTACCTCCTGC+AGG 0.538215 3:-80418985 None:intergenic
GGAGTGCCGAATGCTGAAGA+TGG 0.538730 3:-80414845 None:intergenic
ACTAGCCACAATAACTAGAC+AGG 0.539256 3:+80418754 MsG0380016204.01.T01:CDS
TTGAGAATTGGAAACGGCGA+AGG 0.540717 3:-80415104 None:intergenic
ATCATGTGGGCGGAAGCTAT+GGG 0.541380 3:+80416107 MsG0380016204.01.T01:CDS
CGTGTCAAGGCTAATAGCAA+TGG 0.543360 3:+80418902 MsG0380016204.01.T01:CDS
CTGAAGATGGGGTCCCGAAG+AGG 0.544355 3:-80414832 None:intergenic
CAGAGAACGGTGTTGAGAAG+AGG 0.544554 3:-80414982 None:intergenic
GGAAGCTATGGGGAAGCTTG+AGG 0.544713 3:+80416118 MsG0380016204.01.T01:CDS
GTTTATGTTGCTAGATCATG+TGG 0.544933 3:+80416093 MsG0380016204.01.T01:intron
CTGAAAGCTGGTGTTGAAGA+AGG 0.547067 3:-80414881 None:intergenic
AGGCCACAAACATCGCAAAT+GGG 0.549395 3:-80419416 None:intergenic
TATTACCAAATCATGATACA+TGG 0.551515 3:-80419333 None:intergenic
AGAATAGTGGAGGCGTTGGA+GGG 0.552709 3:+80418680 MsG0380016204.01.T01:CDS
GAGTGCCGAATGCTGAAGAT+GGG 0.561315 3:-80414844 None:intergenic
TGTTCTGAAGCGAGACGCAC+GGG 0.561337 3:+80419192 MsG0380016204.01.T01:CDS
AACACTGCCAAGTCTTGCTA+TGG 0.563127 3:-80419173 None:intergenic
GAAGAACCACCACCGAAAGC+GGG 0.563527 3:-80414959 None:intergenic
GAAGAAGGAGTACCGAAAGT+TGG 0.564163 3:-80414866 None:intergenic
GTGTTCTGAAGCGAGACGCA+CGG 0.568554 3:+80419191 MsG0380016204.01.T01:CDS
GGAAGAACCACCACCGAAAG+CGG 0.569387 3:-80414960 None:intergenic
TCCAGTTCCATTCTCACTAG+CGG 0.572002 3:+80415153 MsG0380016204.01.T01:CDS
TGAAGATGGGGTCCCGAAGA+GGG 0.572735 3:-80414831 None:intergenic
GCTGAACCCTTCAAGAATGT+AGG 0.576573 3:-80419450 None:intergenic
TGAAGATTGACCGCCGAACA+TGG 0.577493 3:-80414804 None:intergenic
ATTGAAGGTGATGAGAATAG+TGG 0.583298 3:+80418667 MsG0380016204.01.T01:intron
CAAAAGCGGGAGTTGAAGAA+GGG 0.585231 3:-80414922 None:intergenic
GTAGAAGAAGCACCAAAAGC+GGG 0.586298 3:-80414935 None:intergenic
TCTTCTACACCCGCTTTCGG+TGG 0.586639 3:+80414950 MsG0380016204.01.T01:CDS
ACGGGATATGGAGATTATGA+TGG 0.590444 3:+80419210 MsG0380016204.01.T01:CDS
TATGGAGATTATGATGGCTG+AGG 0.590797 3:+80419216 MsG0380016204.01.T01:CDS
ATGGATGCCATAGCAAGACT+TGG 0.599180 3:+80419166 MsG0380016204.01.T01:CDS
GGTTGTTGTTGAGCAGAGAA+CGG 0.603528 3:-80414995 None:intergenic
ATGGACAAATTACAAACCAA+AGG 0.608304 3:-80419314 None:intergenic
CAGGCTTCACCCTAAACTGT+GGG 0.612681 3:-80415971 None:intergenic
AGTCAATTGAGAATTGGAAA+CGG 0.615421 3:-80415110 None:intergenic
ATTATGATGGCTGAGGACAT+GGG 0.618742 3:+80419223 MsG0380016204.01.T01:CDS
CTTACATCTGAAACACCAGC+AGG 0.625885 3:-80415990 None:intergenic
CCGTATTCCATTAACAAAAG+GGG 0.630334 3:+80418712 MsG0380016204.01.T01:CDS
AAACCTTAAAAGCGTATTTG+GGG 0.630724 3:-80415314 None:intergenic
TGGAGCGGAATTATCTAGAA+GGG 0.631061 3:+80418856 MsG0380016204.01.T01:CDS
TCAGCTGAAAGGATCTGGAG+CGG 0.638114 3:+80418841 MsG0380016204.01.T01:CDS
CCGCCGAACATGGTGGTGTG+CGG 0.642470 3:-80414794 None:intergenic
TGTAGAAGAAGCACCAAAAG+CGG 0.643383 3:-80414936 None:intergenic
GCAGGCTTCACCCTAAACTG+TGG 0.646030 3:-80415972 None:intergenic
GAAGGTGATGAGAATAGTGG+AGG 0.650075 3:+80418670 MsG0380016204.01.T01:intron
ACTCGGCGTATCTCGTGTCA+AGG 0.651033 3:+80418889 MsG0380016204.01.T01:CDS
AGAAGGGTACAAAATCTACT+CGG 0.654843 3:+80418872 MsG0380016204.01.T01:CDS
TTGGTTTCAGAATTCTACGC+CGG 0.655438 3:+80415073 MsG0380016204.01.T01:CDS
CCGCACACCACCATGTTCGG+CGG 0.655972 3:+80414794 MsG0380016204.01.T01:exon
AAGTCTGGCTGACCTGCAGG+AGG 0.657558 3:+80418973 MsG0380016204.01.T01:CDS
TCATGTGGGCGGAAGCTATG+GGG 0.675093 3:+80416108 MsG0380016204.01.T01:CDS
TTTATGTTGCTAGATCATGT+GGG 0.694092 3:+80416094 MsG0380016204.01.T01:intron
ATGTTGCTAGATCATGTGGG+CGG 0.703435 3:+80416097 MsG0380016204.01.T01:intron
AAAAGCGGGAGTTGAAGAAG+GGG 0.703806 3:-80414921 None:intergenic
AGAAGGGGTACCGAAGCCTG+GGG 0.706896 3:-80414906 None:intergenic
AGTGCCGAATGCTGAAGATG+GGG 0.747720 3:-80414843 None:intergenic
AGATTGACCGCCGAACATGG+TGG 0.846340 3:-80414801 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGTTAAATAATTATATAA+TGG + Chr3:80416746-80416765 MsG0380016204.01.T01:intron 10.0%
!!! AGTTTATTTTTAGTAAAATA+GGG + Chr3:80416629-80416648 MsG0380016204.01.T01:intron 10.0%
!!! TAAATTTATTTGGAATTATA+GGG + Chr3:80415360-80415379 MsG0380016204.01.T01:intron 10.0%
!!! TTAAATTTATTTGGAATTAT+AGG + Chr3:80415359-80415378 MsG0380016204.01.T01:intron 10.0%
!! ATCATAAAATTTCCAAATAT+TGG + Chr3:80416424-80416443 MsG0380016204.01.T01:intron 15.0%
!! ATTTATTCTAACAAGAAAAT+GGG - Chr3:80417066-80417085 None:intergenic 15.0%
!! CTAAAACAACTAAAATTAAT+AGG - Chr3:80417900-80417919 None:intergenic 15.0%
!! CTTCTTCATTTAAATTTATT+TGG + Chr3:80415350-80415369 MsG0380016204.01.T01:intron 15.0%
!! TATTGATCTAATACTAAAAT+TGG - Chr3:80418111-80418130 None:intergenic 15.0%
!! TATTTATTCTAACAAGAAAA+TGG - Chr3:80417067-80417086 None:intergenic 15.0%
!! TTAATTAACAAGTTAAAACA+AGG + Chr3:80417109-80417128 MsG0380016204.01.T01:intron 15.0%
!! TTGTTATAATAGATTTAGAA+TGG - Chr3:80416709-80416728 None:intergenic 15.0%
!!! AATATTTGGAAATTTTATGA+TGG - Chr3:80416425-80416444 None:intergenic 15.0%
!!! AGCTTATAACTTATTTTTAT+TGG - Chr3:80415784-80415803 None:intergenic 15.0%
!!! CAGTTTATTTTTAGTAAAAT+AGG + Chr3:80416628-80416647 MsG0380016204.01.T01:intron 15.0%
!!! GTTTATTTTTAGTAAAATAG+GGG + Chr3:80416630-80416649 MsG0380016204.01.T01:intron 15.0%
!!! TTTATTTTCTTTACCAATTT+TGG + Chr3:80416334-80416353 MsG0380016204.01.T01:intron 15.0%
!!! TTTTTATAGTGTTTAAAACA+GGG + Chr3:80416286-80416305 MsG0380016204.01.T01:intron 15.0%
!!! TTTTTTATAGTGTTTAAAAC+AGG + Chr3:80416285-80416304 MsG0380016204.01.T01:intron 15.0%
!! AAAATTTCCAAATATTGGTA+TGG + Chr3:80416429-80416448 MsG0380016204.01.T01:intron 20.0%
!! AATTAGAAACTGTTGAAATA+CGG + Chr3:80418270-80418289 MsG0380016204.01.T01:intron 20.0%
!! AGAAAATAAAACGTATTAGA+TGG - Chr3:80416324-80416343 None:intergenic 20.0%
!! AGAAATGTCATGTAATTTAT+AGG - Chr3:80417624-80417643 None:intergenic 20.0%
!! ATTATAGCAATGAATTTGAT+AGG + Chr3:80416514-80416533 MsG0380016204.01.T01:intron 20.0%
!! TATATTGAAATATGCCATAA+TGG + Chr3:80418166-80418185 MsG0380016204.01.T01:intron 20.0%
!! TATTAATATAGCATGTGTTT+GGG + Chr3:80417961-80417980 MsG0380016204.01.T01:intron 20.0%
!! TATTTAACATCTAAATTGCA+AGG - Chr3:80416737-80416756 None:intergenic 20.0%
!! TTATTAATATAGCATGTGTT+TGG + Chr3:80417960-80417979 MsG0380016204.01.T01:intron 20.0%
!! TTTGGATAAATAGCTTAATT+AGG - Chr3:80415406-80415425 None:intergenic 20.0%
!!! ACATTTTAAATGAAGTTGAT+CGG + Chr3:80417665-80417684 MsG0380016204.01.T01:intron 20.0%
!!! ATCTTTGTTTTTTTCCAATT+AGG + Chr3:80415257-80415276 MsG0380016204.01.T01:intron 20.0%
!!! GTTGATTAAATTTTTGTGTT+TGG + Chr3:80415596-80415615 MsG0380016204.01.T01:intron 20.0%
! AAAACTACCATACCAATATT+TGG - Chr3:80416439-80416458 None:intergenic 25.0%
! AAAAGTTTAATTCCGATGTT+TGG - Chr3:80416395-80416414 None:intergenic 25.0%
! AAAGTTTAATTCCGATGTTT+GGG - Chr3:80416394-80416413 None:intergenic 25.0%
! AATATATACAACTCTTCACT+GGG + Chr3:80418139-80418158 MsG0380016204.01.T01:intron 25.0%
! ACATATGATTAGACATAATG+AGG - Chr3:80418643-80418662 None:intergenic 25.0%
! ATATGATTAGACATAATGAG+GGG - Chr3:80418641-80418660 None:intergenic 25.0%
! ATATGCTAAAGGATAAGTTA+AGG + Chr3:80418055-80418074 MsG0380016204.01.T01:intron 25.0%
! ATGATAAATTAGGTTCTGTT+TGG - Chr3:80415424-80415443 None:intergenic 25.0%
! ATGTGAAAAGTAGAACAAAT+AGG + Chr3:80417165-80417184 MsG0380016204.01.T01:intron 25.0%
! ATTAGAAACTGTTGAAATAC+GGG + Chr3:80418271-80418290 MsG0380016204.01.T01:intron 25.0%
! ATTGATTGATTGCATAATGA+TGG - Chr3:80417447-80417466 None:intergenic 25.0%
! CATATGATTAGACATAATGA+GGG - Chr3:80418642-80418661 None:intergenic 25.0%
! GAAACAGCTTATGATAAATT+AGG - Chr3:80415434-80415453 None:intergenic 25.0%
! GAGAAAAATAATACTTGATG+AGG + Chr3:80417806-80417825 MsG0380016204.01.T01:intron 25.0%
! GTCAATTCTAAGTAAAATGT+TGG + Chr3:80417208-80417227 MsG0380016204.01.T01:intron 25.0%
! TAAAACAAGGCATAACATAT+GGG + Chr3:80417122-80417141 MsG0380016204.01.T01:intron 25.0%
! TAAAATCAAGTTCAAATGTC+TGG - Chr3:80416819-80416838 None:intergenic 25.0%
! TAATGATAGGTGAAATTGAA+TGG - Chr3:80416465-80416484 None:intergenic 25.0%
! TAGATATCCAAACAGAAAAT+AGG + Chr3:80416483-80416502 MsG0380016204.01.T01:intron 25.0%
! TATTACCAAATCATGATACA+TGG - Chr3:80419336-80419355 None:intergenic 25.0%
! TTAAAACAAGGCATAACATA+TGG + Chr3:80417121-80417140 MsG0380016204.01.T01:intron 25.0%
!! AAAACCTTAAAAGCGTATTT+GGG - Chr3:80415318-80415337 None:intergenic 25.0%
!! AGACAATTTAAGACAGATTA+TGG - Chr3:80415456-80415475 None:intergenic 25.0%
!! ATTTTTCTCAACTTTTGTTG+TGG - Chr3:80417795-80417814 None:intergenic 25.0%
!! CTTGAATATACGATTTTAGA+AGG + Chr3:80416562-80416581 MsG0380016204.01.T01:intron 25.0%
!! GAAATATATGCTTTTCTGAA+AGG - Chr3:80417383-80417402 None:intergenic 25.0%
!! GTTCTATTTTCAAAACAAAC+TGG + Chr3:80416962-80416981 MsG0380016204.01.T01:intron 25.0%
!!! AACTTAAGCTGTTTTTGAAA+AGG - Chr3:80417331-80417350 None:intergenic 25.0%
!!! AATAACCATGCCTTTTAATT+TGG - Chr3:80417945-80417964 None:intergenic 25.0%
!!! ACTTAAGCTGTTTTTGAAAA+GGG - Chr3:80417330-80417349 None:intergenic 25.0%
!!! ATACCATTTTAACATTGCTT+TGG - Chr3:80418380-80418399 None:intergenic 25.0%
!!! TACCATTTTAACATTGCTTT+GGG - Chr3:80418379-80418398 None:intergenic 25.0%
!!! TATACGATTTTAGAAGGAAA+TGG + Chr3:80416568-80416587 MsG0380016204.01.T01:intron 25.0%
AAAAAATGAAACTGAACAGC+TGG - Chr3:80417255-80417274 None:intergenic 30.0%
AAAAAATTACCTTAAGGCGT+TGG - Chr3:80416208-80416227 None:intergenic 30.0%
AACATCTAAATTGCAAGGTA+AGG - Chr3:80416732-80416751 None:intergenic 30.0%
AACCCAAAGCAATGTTAAAA+TGG + Chr3:80418374-80418393 MsG0380016204.01.T01:CDS 30.0%
AAGGAAATGGATGTTCATAT+GGG + Chr3:80416581-80416600 MsG0380016204.01.T01:intron 30.0%
AATCTTCCTACATTCTTGAA+GGG + Chr3:80419444-80419463 MsG0380016204.01.T01:three_prime_UTR 30.0%
AATTATAGGGTCATGGATAT+AGG + Chr3:80415373-80415392 MsG0380016204.01.T01:intron 30.0%
AGAAACGAGAGAAATATGAT+TGG + Chr3:80417918-80417937 MsG0380016204.01.T01:intron 30.0%
AGATAGGTTAGCATAAAAAC+CGG - Chr3:80418444-80418463 None:intergenic 30.0%
AGTCAATTGAGAATTGGAAA+CGG - Chr3:80415113-80415132 None:intergenic 30.0%
ATAAGCTTGTGAGAAAATGA+CGG + Chr3:80415797-80415816 MsG0380016204.01.T01:intron 30.0%
ATATATATATAGACGTGCGT+CGG + Chr3:80417008-80417027 MsG0380016204.01.T01:intron 30.0%
ATCAGCTCATATGACTAAAA+AGG - Chr3:80415836-80415855 None:intergenic 30.0%
ATGAGAAAACATGAAAGCTA+CGG - Chr3:80415903-80415922 None:intergenic 30.0%
ATGGACAAATTACAAACCAA+AGG - Chr3:80419317-80419336 None:intergenic 30.0%
ATGGGATAAGTATATGCTAA+AGG + Chr3:80418044-80418063 MsG0380016204.01.T01:intron 30.0%
ATTATAGGGTCATGGATATA+GGG + Chr3:80415374-80415393 MsG0380016204.01.T01:intron 30.0%
CTGTTTGGATATCTAATGAT+AGG - Chr3:80416478-80416497 None:intergenic 30.0%
GAAACGAGAGAAATATGATT+GGG + Chr3:80417919-80417938 MsG0380016204.01.T01:intron 30.0%
GAAGAACTCAATGTTAATGA+TGG + Chr3:80419110-80419129 MsG0380016204.01.T01:intron 30.0%
GAATATATACAACTCTTCAC+TGG + Chr3:80418138-80418157 MsG0380016204.01.T01:intron 30.0%
GAATGTAGGAAGATTCAAAT+AGG - Chr3:80419439-80419458 None:intergenic 30.0%
GAATTTGATAGGTTAACTAC+TGG + Chr3:80416525-80416544 MsG0380016204.01.T01:intron 30.0%
GAGCAGAAAAAATTACCTTA+AGG - Chr3:80416214-80416233 None:intergenic 30.0%
GATTCTTATAAAGAAGATGC+TGG + Chr3:80415288-80415307 MsG0380016204.01.T01:CDS 30.0%
GCTTATAAGTTAACTTACAG+CGG + Chr3:80415547-80415566 MsG0380016204.01.T01:intron 30.0%
GTCTAAGTTACTGTTTGAAT+CGG - Chr3:80415503-80415522 None:intergenic 30.0%
TAAACCTCATATTGCCATAT+TGG - Chr3:80419009-80419028 None:intergenic 30.0%
TAATCATATGTCGTGATTGA+AGG + Chr3:80418652-80418671 MsG0380016204.01.T01:intron 30.0%
TATCTGCTTGAAAATGTCTT+TGG - Chr3:80418495-80418514 None:intergenic 30.0%
TATGATTGGGCCAAATTAAA+AGG + Chr3:80417932-80417951 MsG0380016204.01.T01:intron 30.0%
TATGTTTGGATTGATTGGAA+GGG + Chr3:80416237-80416256 MsG0380016204.01.T01:intron 30.0%
TGAGTAAAAATGTGTCATCA+AGG - Chr3:80418297-80418316 None:intergenic 30.0%
TTCTCAATTGACTACTCAAA+TGG + Chr3:80415120-80415139 MsG0380016204.01.T01:CDS 30.0%
TTGAGTAGTCAATTGAGAAT+TGG - Chr3:80415119-80415138 None:intergenic 30.0%
TTTAAATGAAGAAGACAGAG+AGG - Chr3:80415344-80415363 None:intergenic 30.0%
TTTATGTTGCTAGATCATGT+GGG + Chr3:80416094-80416113 MsG0380016204.01.T01:intron 30.0%
TTTCAAAACAAACTGGTGAT+AGG + Chr3:80416969-80416988 MsG0380016204.01.T01:intron 30.0%
TTTGTCCATGTATCATGATT+TGG + Chr3:80419328-80419347 MsG0380016204.01.T01:three_prime_UTR 30.0%
! AAAAAGGTGTAGGTAACATT+TGG - Chr3:80417285-80417304 None:intergenic 30.0%
! AAAAATTACCTTAAGGCGTT+GGG - Chr3:80416207-80416226 None:intergenic 30.0%
! AAAATGTCTTTTCAGCTGAA+AGG + Chr3:80418830-80418849 MsG0380016204.01.T01:CDS 30.0%
! AAACCTTAAAAGCGTATTTG+GGG - Chr3:80415317-80415336 None:intergenic 30.0%
! ACAACAAGTTCAAGGTTTTA+AGG + Chr3:80416175-80416194 MsG0380016204.01.T01:CDS 30.0%
! ATAATGATGGAAATGAAAGG+GGG - Chr3:80417434-80417453 None:intergenic 30.0%
! ATTTGATGATAGAAAGAGGT+AGG + Chr3:80417831-80417850 MsG0380016204.01.T01:intron 30.0%
! CATAATGATGGAAATGAAAG+GGG - Chr3:80417435-80417454 None:intergenic 30.0%
! CATTAAATGTCCATTTTCTG+AGG - Chr3:80419251-80419270 None:intergenic 30.0%
! GAAAACCTTAAAAGCGTATT+TGG - Chr3:80415319-80415338 None:intergenic 30.0%
! GCATAATGATGGAAATGAAA+GGG - Chr3:80417436-80417455 None:intergenic 30.0%
! TATAGTGTTTAAAACAGGGT+TGG + Chr3:80416290-80416309 MsG0380016204.01.T01:intron 30.0%
! TATTTGGAATTATAGGGTCA+TGG + Chr3:80415366-80415385 MsG0380016204.01.T01:intron 30.0%
! TCTTACTTCGTATTTTCCTT+TGG + Chr3:80419298-80419317 MsG0380016204.01.T01:three_prime_UTR 30.0%
! TGCATAATGATGGAAATGAA+AGG - Chr3:80417437-80417456 None:intergenic 30.0%
! TGTAAATCCCCATTTTGTAA+CGG + Chr3:80417541-80417560 MsG0380016204.01.T01:intron 30.0%
! TTCTGAAAGCAAAAAGCAAA+AGG - Chr3:80414723-80414742 None:intergenic 30.0%
!! AGCAACGTATTTTAAGAGTA+TGG + Chr3:80418560-80418579 MsG0380016204.01.T01:intron 30.0%
!! AGTTTTGGTCCAAATGAAAA+AGG - Chr3:80417301-80417320 None:intergenic 30.0%
!! TCAAAAACAGCTTAAGTTGA+TGG + Chr3:80417333-80417352 MsG0380016204.01.T01:intron 30.0%
!! TTAAAACCTTGAACTTGTTG+TGG - Chr3:80416176-80416195 None:intergenic 30.0%
!! TTACCTACACCTTTTTCATT+TGG + Chr3:80417289-80417308 MsG0380016204.01.T01:intron 30.0%
!!! TATGGGTTTTGTTTCATGTT+TGG + Chr3:80417139-80417158 MsG0380016204.01.T01:intron 30.0%
!!! TTCTTTACCAATTTTGGCTA+TGG + Chr3:80416340-80416359 MsG0380016204.01.T01:intron 30.0%
AATGCATCCGTTACAAAATG+GGG - Chr3:80417551-80417570 None:intergenic 35.0%
AGAAAATGACGGTTACCAAA+CGG + Chr3:80415808-80415827 MsG0380016204.01.T01:intron 35.0%
AGAATCAAGAATCGCCTAAT+TGG - Chr3:80415274-80415293 None:intergenic 35.0%
AGGAAATGGATGTTCATATG+GGG + Chr3:80416582-80416601 MsG0380016204.01.T01:intron 35.0%
AGTCATGTTCCTAAAAGCTT+TGG - Chr3:80418085-80418104 None:intergenic 35.0%
ATGACTAAAAAGGATCCGTT+TGG - Chr3:80415826-80415845 None:intergenic 35.0%
ATGTTTGGATTGATTGGAAG+GGG + Chr3:80416238-80416257 MsG0380016204.01.T01:intron 35.0%
ATTGAAGGTGATGAGAATAG+TGG + Chr3:80418667-80418686 MsG0380016204.01.T01:intron 35.0%
CAAAATTCACGATCAAAGTC+TGG + Chr3:80418958-80418977 MsG0380016204.01.T01:CDS 35.0%
CAATGCATCCGTTACAAAAT+GGG - Chr3:80417552-80417571 None:intergenic 35.0%
CATATACTTATCCCATTCGT+AGG - Chr3:80418040-80418059 None:intergenic 35.0%
CATCAGAGAATCGAAAAGAT+AGG - Chr3:80418460-80418479 None:intergenic 35.0%
CCGTATTCCATTAACAAAAG+GGG + Chr3:80418712-80418731 MsG0380016204.01.T01:CDS 35.0%
CTATGTTTGGATTGATTGGA+AGG + Chr3:80416236-80416255 MsG0380016204.01.T01:intron 35.0%
CTCTGCTTTAGTATAAACCA+TGG - Chr3:80416887-80416906 None:intergenic 35.0%
GAAGGAAATGGATGTTCATA+TGG + Chr3:80416580-80416599 MsG0380016204.01.T01:intron 35.0%
GAATCTTCCTACATTCTTGA+AGG + Chr3:80419443-80419462 MsG0380016204.01.T01:three_prime_UTR 35.0%
GACTAACATACCAATCTTTG+CGG - Chr3:80417740-80417759 None:intergenic 35.0%
GAGGTAAGATTCTACCAATA+TGG + Chr3:80418992-80419011 MsG0380016204.01.T01:intron 35.0%
GCCGTATTCCATTAACAAAA+GGG + Chr3:80418711-80418730 MsG0380016204.01.T01:CDS 35.0%
GTTTATGTTGCTAGATCATG+TGG + Chr3:80416093-80416112 MsG0380016204.01.T01:intron 35.0%
TCCAATCAATCCAAACATAG+TGG - Chr3:80416236-80416255 None:intergenic 35.0%
TCCACTATGTTTGGATTGAT+TGG + Chr3:80416232-80416251 MsG0380016204.01.T01:intron 35.0%
TCCCAAGAAAAATGTTGAAC+CGG + Chr3:80418416-80418435 MsG0380016204.01.T01:intron 35.0%
TCTACCAATATGGCAATATG+AGG + Chr3:80419002-80419021 MsG0380016204.01.T01:intron 35.0%
TGCCGTATTCCATTAACAAA+AGG + Chr3:80418710-80418729 MsG0380016204.01.T01:CDS 35.0%
TGTTTCAGTCTTTGAATCCA+AGG - Chr3:80418523-80418542 None:intergenic 35.0%
TTAGTAAAATAGGGGAAACC+TGG + Chr3:80416638-80416657 MsG0380016204.01.T01:intron 35.0%
TTCTACCTGTCTAGTTATTG+TGG - Chr3:80418762-80418781 None:intergenic 35.0%
TTCTACTCTAGTCTCTGTTA+TGG + Chr3:80417640-80417659 MsG0380016204.01.T01:intron 35.0%
TTTCAACTATCACCTTCTAC+TGG + Chr3:80415048-80415067 MsG0380016204.01.T01:CDS 35.0%
! AAACCCCAAATACGCTTTTA+AGG + Chr3:80415311-80415330 MsG0380016204.01.T01:CDS 35.0%
! AACAGCTACTCTGTGTTATT+AGG - Chr3:80417506-80417525 None:intergenic 35.0%
! AAGGCTAATAGCAATGGATT+TGG + Chr3:80418908-80418927 MsG0380016204.01.T01:CDS 35.0%
! AGAAGGGTACAAAATCTACT+CGG + Chr3:80418872-80418891 MsG0380016204.01.T01:CDS 35.0%
! ATAGTGAGCACAGTAGTTTT+AGG + Chr3:80419355-80419374 MsG0380016204.01.T01:three_prime_UTR 35.0%
! CAGACTTTGATCGTGAATTT+TGG - Chr3:80418960-80418979 None:intergenic 35.0%
! CCCCTTTTGTTAATGGAATA+CGG - Chr3:80418715-80418734 None:intergenic 35.0%
! CTATCTTTTCGATTCTCTGA+TGG + Chr3:80418458-80418477 MsG0380016204.01.T01:intron 35.0%
! GCTTTCATGTTTTCTCATGT+TGG + Chr3:80415905-80415924 MsG0380016204.01.T01:intron 35.0%
! GGACATTTGATGATAGAAAG+AGG + Chr3:80417827-80417846 MsG0380016204.01.T01:intron 35.0%
! TACGATGCCTATTTTCTGTT+TGG - Chr3:80416493-80416512 None:intergenic 35.0%
! TGAAAAGGGAGAATGAGTTT+TGG - Chr3:80417316-80417335 None:intergenic 35.0%
! TTGCTGATGTCAAGATTTTG+TGG + Chr3:80416914-80416933 MsG0380016204.01.T01:intron 35.0%
! TTTTTCTGCTCCACTATGTT+TGG + Chr3:80416223-80416242 MsG0380016204.01.T01:intron 35.0%
! TTTTTCTTATGTCATGCCAC+TGG + Chr3:80416054-80416073 MsG0380016204.01.T01:intron 35.0%
! TTTTTGCACCAAATACTGAC+TGG - Chr3:80418221-80418240 None:intergenic 35.0%
!! ACCGGTTCAACATTTTTCTT+GGG - Chr3:80418420-80418439 None:intergenic 35.0%
!! TAGTGAGCACAGTAGTTTTA+GGG + Chr3:80419356-80419375 MsG0380016204.01.T01:three_prime_UTR 35.0%
!! TTTCTCAACTTTTGTTGTGG+CGG - Chr3:80417792-80417811 None:intergenic 35.0%
!!! TACCGGTTCAACATTTTTCT+TGG - Chr3:80418421-80418440 None:intergenic 35.0%
AACTGAGCTTCCATGATAGT+TGG + Chr3:80416664-80416683 MsG0380016204.01.T01:intron 40.0%
AATCTTCATCTTCCCTCTTC+GGG + Chr3:80414819-80414838 MsG0380016204.01.T01:CDS 40.0%
AATGGATGTTCATATGGGGT+TGG + Chr3:80416586-80416605 MsG0380016204.01.T01:intron 40.0%
ACGGGATATGGAGATTATGA+TGG + Chr3:80419210-80419229 MsG0380016204.01.T01:CDS 40.0%
ACTAGCCACAATAACTAGAC+AGG + Chr3:80418754-80418773 MsG0380016204.01.T01:CDS 40.0%
AGTAGCTCCATAGCCAAAAT+TGG - Chr3:80416350-80416369 None:intergenic 40.0%
ATATACAACTCTTCACTGGG+TGG + Chr3:80418142-80418161 MsG0380016204.01.T01:intron 40.0%
ATGAAAGCTACGGTTCTGTT+TGG - Chr3:80415893-80415912 None:intergenic 40.0%
ATGATAGAAAGAGGTAGGAG+TGG + Chr3:80417836-80417855 MsG0380016204.01.T01:intron 40.0%
ATGGATGTTCATATGGGGTT+GGG + Chr3:80416587-80416606 MsG0380016204.01.T01:intron 40.0%
ATTATGATGGCTGAGGACAT+GGG + Chr3:80419223-80419242 MsG0380016204.01.T01:CDS 40.0%
CAATCTTCATCTTCCCTCTT+CGG + Chr3:80414818-80414837 MsG0380016204.01.T01:CDS 40.0%
CAGAGACAATGACTTCATCT+TGG - Chr3:80418335-80418354 None:intergenic 40.0%
CCAATGCATCCGTTACAAAA+TGG - Chr3:80417553-80417572 None:intergenic 40.0%
CTGAAACCAAAACCAGTAGA+AGG - Chr3:80415063-80415082 None:intergenic 40.0%
GAAAAATGTTGAACCGGTAC+CGG + Chr3:80418422-80418441 MsG0380016204.01.T01:intron 40.0%
GCGCTTAAATTTAGCAGTCT+AGG - Chr3:80414699-80414718 None:intergenic 40.0%
GGACAGACGTTGAGAAAAAA+AGG + Chr3:80417186-80417205 MsG0380016204.01.T01:intron 40.0%
GGTGATAGGAAGTGATATGA+AGG + Chr3:80416983-80417002 MsG0380016204.01.T01:intron 40.0%
GTGCATAGAAAGGACTCAAT+TGG + Chr3:80416260-80416279 MsG0380016204.01.T01:intron 40.0%
GTTAGCATAAAAACCGGTAC+CGG - Chr3:80418438-80418457 None:intergenic 40.0%
TACCAACTAGAATGCTCAGT+GGG - Chr3:80416029-80416048 None:intergenic 40.0%
TAGAGAGGAAATGCACAAAC+TGG - Chr3:80418016-80418035 None:intergenic 40.0%
TATGGAGATTATGATGGCTG+AGG + Chr3:80419216-80419235 MsG0380016204.01.T01:CDS 40.0%
TATTCCCCAAAATTAGCCAG+TGG - Chr3:80416073-80416092 None:intergenic 40.0%
TCCTACATTCTTGAAGGGTT+CGG + Chr3:80419449-80419468 MsG0380016204.01.T01:three_prime_UTR 40.0%
TGGAGCGGAATTATCTAGAA+GGG + Chr3:80418856-80418875 MsG0380016204.01.T01:CDS 40.0%
TGTAACAGACCCACAGTTTA+GGG + Chr3:80415962-80415981 MsG0380016204.01.T01:CDS 40.0%
TGTATCCACCAGTCAGTATT+TGG + Chr3:80418210-80418229 MsG0380016204.01.T01:intron 40.0%
TTCAAGCAGATACTCTTCCT+TGG + Chr3:80418503-80418522 MsG0380016204.01.T01:CDS 40.0%
TTCCATGATAGTTGGATCCA+AGG + Chr3:80416672-80416691 MsG0380016204.01.T01:intron 40.0%
TTCCTCTCTAACCTACGAAT+GGG + Chr3:80418026-80418045 MsG0380016204.01.T01:intron 40.0%
TTCCTTGGATCCAACTATCA+TGG - Chr3:80416677-80416696 None:intergenic 40.0%
TTGGGCCAAATTAAAAGGCA+TGG + Chr3:80417937-80417956 MsG0380016204.01.T01:intron 40.0%
TTGGTTTCAGAATTCTACGC+CGG + Chr3:80415073-80415092 MsG0380016204.01.T01:CDS 40.0%
TTTCCTCTCTAACCTACGAA+TGG + Chr3:80418025-80418044 MsG0380016204.01.T01:intron 40.0%
! AACATTTTTCTTGGGAGAGC+AGG - Chr3:80418412-80418431 None:intergenic 40.0%
! ATAGCATGTGTTTGGGATCA+TGG + Chr3:80417968-80417987 MsG0380016204.01.T01:intron 40.0%
! GAATGGATTTGAGTCTTCCT+TGG - Chr3:80416692-80416711 None:intergenic 40.0%
! GGTCCAAATGAAAAAGGTGT+AGG - Chr3:80417295-80417314 None:intergenic 40.0%
! TAAGGAGAGCCAAAGCTTTT+AGG + Chr3:80418073-80418092 MsG0380016204.01.T01:intron 40.0%
! TCAGCTTCCCCTTTTGTTAA+TGG - Chr3:80418722-80418741 None:intergenic 40.0%
! TCTTTTCAGCTGAAAGGATC+TGG + Chr3:80418836-80418855 MsG0380016204.01.T01:CDS 40.0%
!! TCATGCCACTGGCTAATTTT+GGG + Chr3:80416065-80416084 MsG0380016204.01.T01:intron 40.0%
!! TGTAACGGATGCATTGGAAA+AGG + Chr3:80417556-80417575 MsG0380016204.01.T01:intron 40.0%
!! TGTAGAAGAAGCACCAAAAG+CGG - Chr3:80414939-80414958 None:intergenic 40.0%
!!! CCATTTTGTAACGGATGCAT+TGG + Chr3:80417550-80417569 MsG0380016204.01.T01:intron 40.0%
!!! CTATCACCTTCTACTGGTTT+TGG + Chr3:80415054-80415073 MsG0380016204.01.T01:CDS 40.0%
AAAAGCGGGAGTTGAAGAAG+GGG - Chr3:80414924-80414943 None:intergenic 45.0%
AACACTGCCAAGTCTTGCTA+TGG - Chr3:80419176-80419195 None:intergenic 45.0%
AATTCCGATGTTTGGGAGCA+CGG - Chr3:80416387-80416406 None:intergenic 45.0%
ACAAACTGGATGTGCGTTAG+GGG - Chr3:80418002-80418021 None:intergenic 45.0%
ACGGATGCATTGGAAAAGGA+AGG + Chr3:80417560-80417579 MsG0380016204.01.T01:intron 45.0%
AGGCCACAAACATCGCAAAT+GGG - Chr3:80419419-80419438 None:intergenic 45.0%
ATCCCATTCGTAGGTTAGAG+AGG - Chr3:80418031-80418050 None:intergenic 45.0%
ATGGATGCCATAGCAAGACT+TGG + Chr3:80419166-80419185 MsG0380016204.01.T01:CDS 45.0%
ATGGTCTACTTTGCGAGAAC+AGG + Chr3:80419129-80419148 MsG0380016204.01.T01:intron 45.0%
ATGTTGCTAGATCATGTGGG+CGG + Chr3:80416097-80416116 MsG0380016204.01.T01:intron 45.0%
CAAAAGCGGGAGTTGAAGAA+GGG - Chr3:80414925-80414944 None:intergenic 45.0%
CAAATGTCTGGCATCATTGC+AGG - Chr3:80416807-80416826 None:intergenic 45.0%
CACAAACTGGATGTGCGTTA+GGG - Chr3:80418003-80418022 None:intergenic 45.0%
CGTGTCAAGGCTAATAGCAA+TGG + Chr3:80418902-80418921 MsG0380016204.01.T01:CDS 45.0%
CTACCAACTAGAATGCTCAG+TGG - Chr3:80416030-80416049 None:intergenic 45.0%
CTACTTCCTGTTCTGTTGCT+TGG + Chr3:80418793-80418812 MsG0380016204.01.T01:CDS 45.0%
CTGGAGCGGAATTATCTAGA+AGG + Chr3:80418855-80418874 MsG0380016204.01.T01:CDS 45.0%
CTTTGGCCACAACAAGTTCA+AGG + Chr3:80416167-80416186 MsG0380016204.01.T01:CDS 45.0%
GACATGGGAACCTCAGAAAA+TGG + Chr3:80419238-80419257 MsG0380016204.01.T01:CDS 45.0%
GATTATGATGGCTGAGGACA+TGG + Chr3:80419222-80419241 MsG0380016204.01.T01:CDS 45.0%
GGTAACTCAGCTCATCTTCT+GGG + Chr3:80418929-80418948 MsG0380016204.01.T01:CDS 45.0%
GTGTAACAGACCCACAGTTT+AGG + Chr3:80415961-80415980 MsG0380016204.01.T01:CDS 45.0%
TAGGCCACAAACATCGCAAA+TGG - Chr3:80419420-80419439 None:intergenic 45.0%
TCAAACAATCCCCTCCACAA+AGG - Chr3:80417699-80417718 None:intergenic 45.0%
TCCAGTTCCATTCTCACTAG+CGG + Chr3:80415153-80415172 MsG0380016204.01.T01:CDS 45.0%
TGACCCATTTGCGATGTTTG+TGG + Chr3:80419413-80419432 MsG0380016204.01.T01:three_prime_UTR 45.0%
TGGTAACTCAGCTCATCTTC+TGG + Chr3:80418928-80418947 MsG0380016204.01.T01:CDS 45.0%
TGTGGAGGGGATTGTTTGAT+TGG + Chr3:80417700-80417719 MsG0380016204.01.T01:intron 45.0%
TTCCATCCAAGCAACAGAAC+AGG - Chr3:80418802-80418821 None:intergenic 45.0%
TTCCCACTGAGCATTCTAGT+TGG + Chr3:80416024-80416043 MsG0380016204.01.T01:intron 45.0%
TTCTGCTCATCAGATGTCCA+TGG + Chr3:80416867-80416886 MsG0380016204.01.T01:intron 45.0%
TTGAGAATTGGAAACGGCGA+AGG - Chr3:80415107-80415126 None:intergenic 45.0%
TTGTTGCTGCTGCTGTTGTT+GGG - Chr3:80415019-80415038 None:intergenic 45.0%
TTTGTTGCTGCTGCTGTTGT+TGG - Chr3:80415020-80415039 None:intergenic 45.0%
! AGAGAACGGTGTTGAGAAGA+GGG - Chr3:80414984-80415003 None:intergenic 45.0%
! AGGGACACTTTTCGTGTAGT+CGG + Chr3:80419375-80419394 MsG0380016204.01.T01:three_prime_UTR 45.0%
! ATTGGAAGGGGTGCATAGAA+AGG + Chr3:80416250-80416269 MsG0380016204.01.T01:intron 45.0%
! CTGAAAGCTGGTGTTGAAGA+AGG - Chr3:80414884-80414903 None:intergenic 45.0%
! CTTACATCTGAAACACCAGC+AGG - Chr3:80415993-80416012 None:intergenic 45.0%
! GCAGCAGTCTTTTGCCATTA+TGG - Chr3:80418183-80418202 None:intergenic 45.0%
! GGTTGTTGTTGAGCAGAGAA+CGG - Chr3:80414998-80415017 None:intergenic 45.0%
! GTGCTGATAGAGAACGTCTT+TGG + Chr3:80416150-80416169 MsG0380016204.01.T01:CDS 45.0%
! TCATATGGGGTTGGGCATTT+TGG + Chr3:80416595-80416614 MsG0380016204.01.T01:intron 45.0%
! TTCCTGTTCTGTTGCTTGGA+TGG + Chr3:80418797-80418816 MsG0380016204.01.T01:CDS 45.0%
! TTGCACCAAATACTGACTGG+TGG - Chr3:80418218-80418237 None:intergenic 45.0%
!! CATGCCACTGGCTAATTTTG+GGG + Chr3:80416066-80416085 MsG0380016204.01.T01:intron 45.0%
!! GAAGAAGGAGTACCGAAAGT+TGG - Chr3:80414869-80414888 None:intergenic 45.0%
!! GTAGAAGAAGCACCAAAAGC+GGG - Chr3:80414938-80414957 None:intergenic 45.0%
!! GTCATGCCACTGGCTAATTT+TGG + Chr3:80416064-80416083 MsG0380016204.01.T01:intron 45.0%
ATCATGTGGGCGGAAGCTAT+GGG + Chr3:80416107-80416126 MsG0380016204.01.T01:CDS 50.0%
ATTGGAAACGGCGAAGGTTG+CGG - Chr3:80415101-80415120 None:intergenic 50.0%
CAAACTGGATGTGCGTTAGG+GGG - Chr3:80418001-80418020 None:intergenic 50.0%
CAGGCTTCACCCTAAACTGT+GGG - Chr3:80415974-80415993 None:intergenic 50.0%
CATGGAAGCTCAGTTACACC+AGG - Chr3:80416659-80416678 None:intergenic 50.0%
CCAAAAGCGGGAGTTGAAGA+AGG - Chr3:80414926-80414945 None:intergenic 50.0%
GAAGCTATGGGGAAGCTTGA+GGG + Chr3:80416119-80416138 MsG0380016204.01.T01:CDS 50.0%
GAGTTAGCAGCCGCAAAGAT+TGG + Chr3:80417727-80417746 MsG0380016204.01.T01:intron 50.0%
GATCGGCGTCTAATCCTTTG+TGG + Chr3:80417682-80417701 MsG0380016204.01.T01:intron 50.0%
GATGGAAATGAAAGGGGGCA+TGG - Chr3:80417429-80417448 None:intergenic 50.0%
GCACAAACTGGATGTGCGTT+AGG - Chr3:80418004-80418023 None:intergenic 50.0%
GCATTCGGCACTCCAACTTT+CGG + Chr3:80414854-80414873 MsG0380016204.01.T01:CDS 50.0%
GCGTCTAATCCTTTGTGGAG+GGG + Chr3:80417687-80417706 MsG0380016204.01.T01:intron 50.0%
GCTTCTTCTACACCCGCTTT+CGG + Chr3:80414947-80414966 MsG0380016204.01.T01:CDS 50.0%
GGATCTTTCCCAACGCCTTA+AGG + Chr3:80416196-80416215 MsG0380016204.01.T01:CDS 50.0%
GGCGTCTAATCCTTTGTGGA+GGG + Chr3:80417686-80417705 MsG0380016204.01.T01:intron 50.0%
GGTAGAATCTTACCTCCTGC+AGG - Chr3:80418988-80419007 None:intergenic 50.0%
TATGGGGAAGCTTGAGGGTA+TGG + Chr3:80416124-80416143 MsG0380016204.01.T01:CDS 50.0%
TCACGATCCGCTAGTGAGAA+TGG - Chr3:80415163-80415182 None:intergenic 50.0%
TCAGCTGAAAGGATCTGGAG+CGG + Chr3:80418841-80418860 MsG0380016204.01.T01:CDS 50.0%
TCCGCTAGTGAGAATGGAAC+TGG - Chr3:80415157-80415176 None:intergenic 50.0%
TCTTCCGTGCTCCCAAACAT+CGG + Chr3:80416380-80416399 MsG0380016204.01.T01:intron 50.0%
TGAAGATTGACCGCCGAACA+TGG - Chr3:80414807-80414826 None:intergenic 50.0%
TTAGCAGTTCCCGTGTGTCT+AGG - Chr3:80417037-80417056 None:intergenic 50.0%
TTCTTGGGAGAGCAGGAGAA+AGG - Chr3:80418405-80418424 None:intergenic 50.0%
! AAAGGGGGCATGGCATTAAC+AGG - Chr3:80417419-80417438 None:intergenic 50.0%
! ACAGGTATTGCAGCAGCAGA+TGG + Chr3:80419147-80419166 MsG0380016204.01.T01:intron 50.0%
! AGTGCCGAATGCTGAAGATG+GGG - Chr3:80414846-80414865 None:intergenic 50.0%
! CAGAGAACGGTGTTGAGAAG+AGG - Chr3:80414985-80415004 None:intergenic 50.0%
! CCTTCTTCAACTCCCGCTTT+TGG + Chr3:80414923-80414942 MsG0380016204.01.T01:CDS 50.0%
! GACACTTTTCGTGTAGTCGG+CGG + Chr3:80419378-80419397 MsG0380016204.01.T01:three_prime_UTR 50.0%
! GCATGTGTTTGGGATCATGG+TGG + Chr3:80417971-80417990 MsG0380016204.01.T01:intron 50.0%
!! GAGTGCCGAATGCTGAAGAT+GGG - Chr3:80414847-80414866 None:intergenic 50.0%
ACTCGGCGTATCTCGTGTCA+AGG + Chr3:80418889-80418908 MsG0380016204.01.T01:CDS 55.0%
AGATTGACCGCCGAACATGG+TGG - Chr3:80414804-80414823 None:intergenic 55.0%
CGGCGTCTAATCCTTTGTGG+AGG + Chr3:80417685-80417704 MsG0380016204.01.T01:intron 55.0%
CGTCGGTAACCTAGACACAC+GGG + Chr3:80417025-80417044 MsG0380016204.01.T01:intron 55.0%
GAAGAACCACCACCGAAAGC+GGG - Chr3:80414962-80414981 None:intergenic 55.0%
GATCATGTGGGCGGAAGCTA+TGG + Chr3:80416106-80416125 MsG0380016204.01.T01:intron 55.0%
GCAGGCTTCACCCTAAACTG+TGG - Chr3:80415975-80415994 None:intergenic 55.0%
GGAAGAACCACCACCGAAAG+CGG - Chr3:80414963-80414982 None:intergenic 55.0%
GGAAGCTATGGGGAAGCTTG+AGG + Chr3:80416118-80416137 MsG0380016204.01.T01:CDS 55.0%
GGGACCCCATCTTCAGCATT+CGG + Chr3:80414839-80414858 MsG0380016204.01.T01:CDS 55.0%
TCAAAGTCTGGCTGACCTGC+AGG + Chr3:80418970-80418989 MsG0380016204.01.T01:CDS 55.0%
TCATGTGGGCGGAAGCTATG+GGG + Chr3:80416108-80416127 MsG0380016204.01.T01:CDS 55.0%
TCTTCTACACCCGCTTTCGG+TGG + Chr3:80414950-80414969 MsG0380016204.01.T01:CDS 55.0%
TGAAGATGGGGTCCCGAAGA+GGG - Chr3:80414834-80414853 None:intergenic 55.0%
! CAGTTTAGGGTGAAGCCTGC+TGG + Chr3:80415975-80415994 MsG0380016204.01.T01:CDS 55.0%
! GATGTTTGGGAGCACGGAAG+AGG - Chr3:80416381-80416400 None:intergenic 55.0%
! GCGTCGGTAACCTAGACACA+CGG + Chr3:80417024-80417043 MsG0380016204.01.T01:intron 55.0%
!! AAGAAGGGGTACCGAAGCCT+GGG - Chr3:80414910-80414929 None:intergenic 55.0%
!! GGAGTGCCGAATGCTGAAGA+TGG - Chr3:80414848-80414867 None:intergenic 55.0%
!! GTGTTCTGAAGCGAGACGCA+CGG + Chr3:80419191-80419210 MsG0380016204.01.T01:CDS 55.0%
!! TGTTCTGAAGCGAGACGCAC+GGG + Chr3:80419192-80419211 MsG0380016204.01.T01:CDS 55.0%
AAGTCTGGCTGACCTGCAGG+AGG + Chr3:80418973-80418992 MsG0380016204.01.T01:CDS 60.0%
ACACCAGCTTTCAGCACCCC+AGG + Chr3:80414890-80414909 MsG0380016204.01.T01:CDS 60.0%
ACGCCGCACACCACCATGTT+CGG + Chr3:80414791-80414810 MsG0380016204.01.T01:exon 60.0%
CTGAAGATGGGGTCCCGAAG+AGG - Chr3:80414835-80414854 None:intergenic 60.0%
GAAGCGAGACGCACGGGATA+TGG + Chr3:80419198-80419217 MsG0380016204.01.T01:CDS 60.0%
GCTTTCAGCACCCCAGGCTT+CGG + Chr3:80414896-80414915 MsG0380016204.01.T01:CDS 60.0%
TCTACACCCGCTTTCGGTGG+TGG + Chr3:80414953-80414972 MsG0380016204.01.T01:CDS 60.0%
!! AAGCCTGGGGTGCTGAAAGC+TGG - Chr3:80414896-80414915 None:intergenic 60.0%
!! AGAAGGGGTACCGAAGCCTG+GGG - Chr3:80414909-80414928 None:intergenic 60.0%
!! GAAGAAGGGGTACCGAAGCC+TGG - Chr3:80414911-80414930 None:intergenic 60.0%
CCGCACACCACCATGTTCGG+CGG + Chr3:80414794-80414813 MsG0380016204.01.T01:exon 65.0%
! CCGCCGAACATGGTGGTGTG+CGG - Chr3:80414797-80414816 None:intergenic 65.0%
AACGGCGAAGGTTGCGGCGC+CGG - Chr3:80415095-80415114 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80414691 80419469 80414691 ID=MsG0380016204.01;Name=MsG0380016204.01
Chr3 mRNA 80414691 80419469 80414691 ID=MsG0380016204.01.T01;Parent=MsG0380016204.01;Name=MsG0380016204.01.T01;_AED=0.41;_eAED=0.41;_QI=115|1|0.87|1|1|1|8|196|401
Chr3 exon 80414691 80415189 80414691 ID=MsG0380016204.01.T01:exon:13591;Parent=MsG0380016204.01.T01
Chr3 exon 80415279 80415332 80415279 ID=MsG0380016204.01.T01:exon:13592;Parent=MsG0380016204.01.T01
Chr3 exon 80415948 80416007 80415948 ID=MsG0380016204.01.T01:exon:13593;Parent=MsG0380016204.01.T01
Chr3 exon 80416107 80416217 80416107 ID=MsG0380016204.01.T01:exon:13594;Parent=MsG0380016204.01.T01
Chr3 exon 80418330 80418395 80418330 ID=MsG0380016204.01.T01:exon:13595;Parent=MsG0380016204.01.T01
Chr3 exon 80418490 80418576 80418490 ID=MsG0380016204.01.T01:exon:13596;Parent=MsG0380016204.01.T01
Chr3 exon 80418674 80418994 80418674 ID=MsG0380016204.01.T01:exon:13597;Parent=MsG0380016204.01.T01
Chr3 exon 80419151 80419469 80419151 ID=MsG0380016204.01.T01:exon:13598;Parent=MsG0380016204.01.T01
Chr3 five_prime_UTR 80414691 80414805 80414691 ID=MsG0380016204.01.T01:five_prime_utr;Parent=MsG0380016204.01.T01
Chr3 CDS 80414806 80415189 80414806 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80415279 80415332 80415279 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80415948 80416007 80415948 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80416107 80416217 80416107 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80418330 80418395 80418330 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80418490 80418576 80418490 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80418674 80418994 80418674 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 CDS 80419151 80419273 80419151 ID=MsG0380016204.01.T01:cds;Parent=MsG0380016204.01.T01
Chr3 three_prime_UTR 80419274 80419469 80419274 ID=MsG0380016204.01.T01:three_prime_utr;Parent=MsG0380016204.01.T01
Gene Sequence

>MsG0380016204.01.T01

ATGTTCGGCGGTCAATCTTCATCTTCCCTCTTCGGGACCCCATCTTCAGCATTCGGCACTCCAACTTTCGGTACTCCTTCTTCAACACCAGCTTTCAGCACCCCAGGCTTCGGTACCCCTTCTTCAACTCCCGCTTTTGGTGCTTCTTCTACACCCGCTTTCGGTGGTGGTTCTTCCCTCTTCTCAACACCGTTCTCTGCTCAACAACAACCCAACAACAGCAGCAGCAACAAAATTCACTCTTTCAACTATCACCTTCTACTGGTTTTGGTTTCAGAATTCTACGCCGGCGCCGCAACCTTCGCCGTTTCCAATTCTCAATTGACTACTCAAATGGCTAATGTTGCTCCAGTTCCATTCTCACTAGCGGATCGTGATATTCAAGCGATTCTTGATTCTTATAAAGAAGATGCTGGAAACCCCAAATACGCTTTTAAGCATTTGTTATTCAGTGTAACAGACCCACAGTTTAGGGTGAAGCCTGCTGGTGTTTCAGATATCATGTGGGCGGAAGCTATGGGGAAGCTTGAGGGTATGGAAAGTGCTGATAGAGAACGTCTTTGGCCACAACAAGTTCAAGGTTTTAAGGATCTTTCCCAACGCCTTAAGCTCCAAGATGAAGTCATTGTCTCTGATGCAGAGAGATTAAGTGTAACCCAAAGCAATGTTAAAATGCTCCAAAGACATTTTCAAGCAGATACTCTTCCTTGGATTCAAAGACTGAAACAGAAAGAACAGATTCTTCAGCAACGTATTTTAAGAGTGATGAGAATAGTGGAGGCGTTGGAGGGAAAAGGCTGCCGTATTCCATTAACAAAAGGGGAAGCTGAACTCGCTGAGAAACTAGCCACAATAACTAGACAGGTAGAATTTTGTATCTTCTACTTCCTGTTCTGTTGCTTGGATGGAACTAACGTGAAAATGTCTTTTCAGCTGAAAGGATCTGGAGCGGAATTATCTAGAAGGGTACAAAATCTACTCGGCGTATCTCGTGTCAAGGCTAATAGCAATGGATTTGGTAACTCAGCTCATCTTCTGGGCTCAACCAAAATTCACGATCAAAGTCTGGCTGACCTGCAGGAGGTATTGCAGCAGCAGATGGATGCCATAGCAAGACTTGGCAGTGTTCTGAAGCGAGACGCACGGGATATGGAGATTATGATGGCTGAGGACATGGGAACCTCAGAAAATGGACATTTAATGTAA
Protein sequence

>MsG0380016204.01.T01

MFGGQSSSSLFGTPSSAFGTPTFGTPSSTPAFSTPGFGTPSSTPAFGASSTPAFGGGSSLFSTPFSAQQQPNNSSSNKIHSFNYHLLLVLVSEFYAGAATFAVSNSQLTTQMANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAEAMGKLEGMESADRERLWPQQVQGFKDLSQRLKLQDEVIVSDAERLSVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRILRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQVEFCIFYFLFCCLDGTNVKMSFQLKGSGAELSRRVQNLLGVSRVKANSNGFGNSAHLLGSTKIHDQSLADLQEVLQQQMDAIARLGSVLKRDARDMEIMMAEDMGTSENGHLM*