AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047227.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047227.01.T01 MTR_7g096570 91.045 134 11 1 1 133 1 134 3.08e-85 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047227.01.T01 AT1G48160 68.468 111 35 0 1 111 1 111 1.07e-55 171
MsG0880047227.01.T01 AT1G48160 68.468 111 35 0 1 111 1 111 1.07e-55 171

Find 50 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTACTTGTCTTGAAAT+TGG 0.153966 8:-83592657 MsG0880047227.01.T01:CDS
TGGTCCTACCATGGTGTTTA+GGG 0.217271 8:+83590192 None:intergenic
TTACCCAAGCCAAGCAATTT+AGG 0.233737 8:-83589803 MsG0880047227.01.T01:three_prime_UTR
TTGGTCCTACCATGGTGTTT+AGG 0.265677 8:+83590191 None:intergenic
TGGTGCAGTCTCCTGCTTCT+TGG 0.286321 8:+83590172 None:intergenic
ACCCTACTTGTCTTGAAATT+GGG 0.308703 8:-83592656 MsG0880047227.01.T01:CDS
GGTACAACTTCAATTTAGTT+AGG 0.333994 8:+83590034 None:intergenic
ACTGGACCTTCCAACAAATC+TGG 0.347799 8:-83590137 MsG0880047227.01.T01:CDS
GAAGTTGTACCACTCGGAAA+TGG 0.352593 8:-83590022 MsG0880047227.01.T01:three_prime_UTR
TCCACCTTTCCCAGATTTGT+TGG 0.379710 8:+83590127 None:intergenic
GCACCAACAACAACTGCAAC+TGG 0.381025 8:-83590155 MsG0880047227.01.T01:CDS
GAAAACATCACCGTCACGTT+TGG 0.390796 8:-83589902 MsG0880047227.01.T01:three_prime_UTR
CATGGTCGTCCCCATTGTTA+AGG 0.397715 8:+83589776 None:intergenic
TTTAGGTTGCCCTTAACAAT+GGG 0.417919 8:-83589786 MsG0880047227.01.T01:three_prime_UTR
GCAACCTAAATTGCTTGGCT+TGG 0.427124 8:+83589799 None:intergenic
CAACCTAAATTGCTTGGCTT+GGG 0.442263 8:+83589800 None:intergenic
ACGATCCACTTCTTTATGCT+TGG 0.447336 8:+83592756 None:intergenic
CCTTTCCCAGATTTGTTGGA+AGG 0.448852 8:+83590131 None:intergenic
GGTCCAGTTGCAGTTGTTGT+TGG 0.454893 8:+83590152 None:intergenic
CCCTACTTGTCTTGAAATTG+GGG 0.455560 8:-83592655 MsG0880047227.01.T01:CDS
ATGGTCGTCCCCATTGTTAA+GGG 0.468525 8:+83589777 None:intergenic
AAGTTGTACCACTCGGAAAT+GGG 0.471619 8:-83590021 MsG0880047227.01.T01:three_prime_UTR
TAAGGGCAACCTAAATTGCT+TGG 0.483827 8:+83589794 None:intergenic
CTGGACCTTCCAACAAATCT+GGG 0.502779 8:-83590136 MsG0880047227.01.T01:CDS
CCCCAATTTCAAGACAAGTA+GGG 0.509580 8:+83592655 None:intergenic
TAATTAACCTCGATTGCAAA+AGG 0.520958 8:+83592609 None:intergenic
AATGTTACGCGTTGCAGAGA+TGG 0.526719 8:-83590216 MsG0880047227.01.T01:CDS
TTCTGACATTGTAAGATGGA+AGG 0.527164 8:-83592786 MsG0880047227.01.T01:exon
TCCCCAATTTCAAGACAAGT+AGG 0.528619 8:+83592654 None:intergenic
GTTGCTGAAGGAAGACGAAT+CGG 0.531220 8:-83592699 MsG0880047227.01.T01:CDS
ATTTAGGTTGCCCTTAACAA+TGG 0.532543 8:-83589787 MsG0880047227.01.T01:three_prime_UTR
CCTGCTTCTTGGTCCTACCA+TGG 0.543215 8:+83590183 None:intergenic
CCATGGTAGGACCAAGAAGC+AGG 0.548076 8:-83590183 MsG0880047227.01.T01:CDS
ACATCACCGTCACGTTTGGA+AGG 0.553091 8:-83589898 MsG0880047227.01.T01:three_prime_UTR
AACTTACTCGAAGCTATGGA+TGG 0.559095 8:+83592423 None:intergenic
CCTCGTGATTTCATGCAAAG+AGG 0.566493 8:-83592492 MsG0880047227.01.T01:CDS
CTTAACAATGGGGACGACCA+TGG 0.569647 8:-83589775 MsG0880047227.01.T01:three_prime_UTR
TCCAACAAATCTGGGAAAGG+TGG 0.573312 8:-83590128 MsG0880047227.01.T01:CDS
CCTTCCAACAAATCTGGGAA+AGG 0.605602 8:-83590131 MsG0880047227.01.T01:CDS
AATTACCAAGCATAAAGAAG+TGG 0.608084 8:-83592761 MsG0880047227.01.T01:CDS
TGGTCCCTAAACACCATGGT+AGG 0.614906 8:-83590196 MsG0880047227.01.T01:CDS
TTGTTGATCACAGCTTGACA+AGG 0.618583 8:-83592520 MsG0880047227.01.T01:intron
CCTCTTTGCATGAAATCACG+AGG 0.620436 8:+83592492 None:intergenic
TCATTTCCTTCCAAACGTGA+CGG 0.623316 8:+83589892 None:intergenic
TAAATTGAAGTTGTACCACT+CGG 0.647405 8:-83590028 MsG0880047227.01.T01:three_prime_UTR
GTCTTGTAGTAGCAAAACCA+TGG 0.670524 8:+83589758 None:intergenic
CTCTTTGCATGAAATCACGA+GGG 0.694337 8:+83592493 None:intergenic
TTAGGTTGCCCTTAACAATG+GGG 0.711400 8:-83589785 MsG0880047227.01.T01:three_prime_UTR
GAGATGGTCCCTAAACACCA+TGG 0.720221 8:-83590200 MsG0880047227.01.T01:CDS
GCGCAAAACCCATTTCCGAG+TGG 0.747399 8:+83590013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTGTTATAAAGA+CGG + Chr8:83591821-83591840 None:intergenic 10.0%
!!! AATATTTTCAAAATGATATT+TGG - Chr8:83591780-83591799 MsG0880047227.01.T01:intron 10.0%
!!! CATATAAAAAAATTTTTTTC+GGG - Chr8:83590492-83590511 MsG0880047227.01.T01:intron 10.0%
!!! TACTTTTATGTTAAATAAAA+TGG + Chr8:83591006-83591025 None:intergenic 10.0%
!!! TCACAAAAAATTTAAATTTT+GGG - Chr8:83590283-83590302 MsG0880047227.01.T01:intron 10.0%
!!! TTCACAAAAAATTTAAATTT+TGG - Chr8:83590282-83590301 MsG0880047227.01.T01:intron 10.0%
!!! TTTTATTTTCTAGAAATTAT+AGG - Chr8:83591718-83591737 MsG0880047227.01.T01:intron 10.0%
!! ATATATATTGTTATAAAGAC+GGG + Chr8:83591820-83591839 None:intergenic 15.0%
!! TTAGGATATAGATTTATAAA+GGG + Chr8:83591252-83591271 None:intergenic 15.0%
!! TTTCCTATTTAAATAGAATT+TGG + Chr8:83591850-83591869 None:intergenic 15.0%
!!! AAATATTTTCAACTTATACT+CGG + Chr8:83592507-83592526 None:intergenic 15.0%
!! AATCCTTAAAAATTTGAACA+GGG + Chr8:83590264-83590283 None:intergenic 20.0%
!! AATGGTAAAGGTTAAAAAAT+GGG - Chr8:83591485-83591504 MsG0880047227.01.T01:intron 20.0%
!! ATATATTCCTCAATATAGAT+AGG - Chr8:83590641-83590660 MsG0880047227.01.T01:intron 20.0%
!! CTACCAAATTCTATTTAAAT+AGG - Chr8:83591844-83591863 MsG0880047227.01.T01:intron 20.0%
!! CTTAGGATATAGATTTATAA+AGG + Chr8:83591253-83591272 None:intergenic 20.0%
!!! ATTTCATTTCTAAGAAAGAA+AGG + Chr8:83591108-83591127 None:intergenic 20.0%
!!! TCACTTATAAGTTTTAATTG+TGG - Chr8:83590927-83590946 MsG0880047227.01.T01:intron 20.0%
!!! TTATAAGTTTTAATTGTGGA+TGG - Chr8:83590931-83590950 MsG0880047227.01.T01:intron 20.0%
!!! TTATGATAGCTTATTTCTTA+AGG - Chr8:83591934-83591953 MsG0880047227.01.T01:intron 20.0%
!!! TTCTAGAAATTATAGGATTT+AGG - Chr8:83591725-83591744 MsG0880047227.01.T01:intron 20.0%
!!! TTCTTTTTAGTGTCTTATTT+AGG + Chr8:83590318-83590337 None:intergenic 20.0%
!!! TTTTGAAATTCATGTAAACA+GGG + Chr8:83589839-83589858 None:intergenic 20.0%
!!! TTTTTGAAATTCATGTAAAC+AGG + Chr8:83589840-83589859 None:intergenic 20.0%
! AAAAGAATAGCATAATCTTG+TGG + Chr8:83591700-83591719 None:intergenic 25.0%
! ACTTTATTCTTATTGAACGT+CGG - Chr8:83591582-83591601 MsG0880047227.01.T01:intron 25.0%
! AGAAAAACAATTGATGGAAA+TGG + Chr8:83590731-83590750 None:intergenic 25.0%
! AGACCATGATAATATAACAT+CGG - Chr8:83591674-83591693 MsG0880047227.01.T01:intron 25.0%
! ATGGTTAGAAAAACAATTGA+TGG + Chr8:83590737-83590756 None:intergenic 25.0%
! ATTAACAAAAATCACCTTAG+TGG - Chr8:83590342-83590361 MsG0880047227.01.T01:intron 25.0%
! ATTAACATGTCCATGTAAAT+GGG + Chr8:83591330-83591349 None:intergenic 25.0%
! GAAAAACAATTGATGGAAAT+GGG + Chr8:83590730-83590749 None:intergenic 25.0%
! GAATCCTTAAAAATTTGAAC+AGG + Chr8:83590265-83590284 None:intergenic 25.0%
! GAATGGTAAAGGTTAAAAAA+TGG - Chr8:83591484-83591503 MsG0880047227.01.T01:intron 25.0%
! GTAGGAACTACATATATATT+TGG - Chr8:83591193-83591212 MsG0880047227.01.T01:intron 25.0%
! TAGAAATGAAATTGAATCCT+AGG - Chr8:83591116-83591135 MsG0880047227.01.T01:intron 25.0%
! TATTAACATGTCCATGTAAA+TGG + Chr8:83591331-83591350 None:intergenic 25.0%
! TCTTTATCTTCTATCTCTAT+TGG + Chr8:83590203-83590222 None:intergenic 25.0%
! TTAACAAAAATCACCTTAGT+GGG - Chr8:83590343-83590362 MsG0880047227.01.T01:intron 25.0%
! TTAGAGTAGAATTGGAAATT+AGG - Chr8:83590956-83590975 MsG0880047227.01.T01:intron 25.0%
!! ATGTTTTCTTCTTGTAAGTT+CGG + Chr8:83592649-83592668 None:intergenic 25.0%
!!! ACTTGTTGACATTTTCATAA+CGG - Chr8:83592474-83592493 MsG0880047227.01.T01:CDS 25.0%
!!! AGTGTCTTATTTAGGTTTTT+GGG + Chr8:83590310-83590329 None:intergenic 25.0%
!!! GTCTTTTTTTGTTGTTGTTA+AGG - Chr8:83592718-83592737 MsG0880047227.01.T01:CDS 25.0%
!!! TAGTGTCTTATTTAGGTTTT+TGG + Chr8:83590311-83590330 None:intergenic 25.0%
!!! TTTTGTTTTTATGTCTTTGC+AGG - Chr8:83592098-83592117 MsG0880047227.01.T01:intron 25.0%
AAAAAACTTACTCGAAGCTA+TGG + Chr8:83590147-83590166 None:intergenic 30.0%
AATATCATAGATGATCTCTC+TGG + Chr8:83591909-83591928 None:intergenic 30.0%
AATTACCAAGCATAAAGAAG+TGG - Chr8:83589802-83589821 MsG0880047227.01.T01:three_prime_UTR 30.0%
GGTACAACTTCAATTTAGTT+AGG + Chr8:83592532-83592551 None:intergenic 30.0%
GTTAATAACATCACAACAGA+GGG - Chr8:83591344-83591363 MsG0880047227.01.T01:intron 30.0%
TAAATTGAAGTTGTACCACT+CGG - Chr8:83592535-83592554 MsG0880047227.01.T01:intron 30.0%
TAATTAACCTCGATTGCAAA+AGG + Chr8:83589957-83589976 None:intergenic 30.0%
TGATAAGGCCATTACAAAAA+GGG + Chr8:83591639-83591658 None:intergenic 30.0%
TGCAAGCATCACATATTAAA+AGG - Chr8:83591993-83592012 MsG0880047227.01.T01:intron 30.0%
TGTTAATAACATCACAACAG+AGG - Chr8:83591343-83591362 MsG0880047227.01.T01:intron 30.0%
TTAATAACATCACAACAGAG+GGG - Chr8:83591345-83591364 MsG0880047227.01.T01:intron 30.0%
TTCTTCTTAGAGAATGGTAA+AGG - Chr8:83591473-83591492 MsG0880047227.01.T01:intron 30.0%
TTGATAAGGCCATTACAAAA+AGG + Chr8:83591640-83591659 None:intergenic 30.0%
! AGTTAGAGTTTTGCTCAAAA+AGG - Chr8:83590097-83590116 MsG0880047227.01.T01:exon 30.0%
! ATTCAAAGTACCCATTTACA+TGG - Chr8:83591317-83591336 MsG0880047227.01.T01:intron 30.0%
! GGATGTAACATTTTGTTAAG+AGG - Chr8:83592576-83592595 MsG0880047227.01.T01:intron 30.0%
! GTGTTTTTCTTCTTAGAGAA+TGG - Chr8:83591467-83591486 MsG0880047227.01.T01:intron 30.0%
! TCTTTTCTGACATTGTAAGA+TGG - Chr8:83589773-83589792 MsG0880047227.01.T01:three_prime_UTR 30.0%
!! CACTACTTTAGAGTTTGATA+AGG + Chr8:83591654-83591673 None:intergenic 30.0%
!! CTTGTGATATTCCACTTTTA+TGG - Chr8:83590875-83590894 MsG0880047227.01.T01:intron 30.0%
!! TTGAATTTGTAAAAGTGCCA+CGG + Chr8:83591303-83591322 None:intergenic 30.0%
!!! CTCCAATATTTTGACTGTTT+AGG - Chr8:83591277-83591296 MsG0880047227.01.T01:intron 30.0%
!!! GTGTCTTATTTAGGTTTTTG+GGG + Chr8:83590309-83590328 None:intergenic 30.0%
AACAATTGATGGAAATGGGA+TGG + Chr8:83590726-83590745 None:intergenic 35.0%
AACATACTATTATCGTGTCG+TGG - Chr8:83590771-83590790 MsG0880047227.01.T01:intron 35.0%
AACCCTACTTGTCTTGAAAT+TGG - Chr8:83589906-83589925 MsG0880047227.01.T01:three_prime_UTR 35.0%
AATAAAACACAGAGCTTCAG+TGG + Chr8:83590423-83590442 None:intergenic 35.0%
ACCCTACTTGTCTTGAAATT+GGG - Chr8:83589907-83589926 MsG0880047227.01.T01:three_prime_UTR 35.0%
AGTTACGAAATTGACCTACA+TGG + Chr8:83591538-83591557 None:intergenic 35.0%
ATGTTGCAGCAATGTTATGA+TGG + Chr8:83590756-83590775 None:intergenic 35.0%
CAAAATATTGGAGCATGCTT+AGG + Chr8:83591270-83591289 None:intergenic 35.0%
CAATGCTCCTATCTATATTG+AGG + Chr8:83590651-83590670 None:intergenic 35.0%
CCACAAACATAACCAAAAGT+AGG - Chr8:83590393-83590412 MsG0880047227.01.T01:intron 35.0%
GCATAACATTACTTTGTCCT+AGG + Chr8:83591136-83591155 None:intergenic 35.0%
GGCCTAAACAGTCAAAATAT+TGG + Chr8:83591282-83591301 None:intergenic 35.0%
TAATAACATCACAACAGAGG+GGG - Chr8:83591346-83591365 MsG0880047227.01.T01:intron 35.0%
TGGCCGATGTTATATTATCA+TGG + Chr8:83591680-83591699 None:intergenic 35.0%
TTCAAAAAGACTGTTGCTGA+AGG - Chr8:83589852-83589871 MsG0880047227.01.T01:three_prime_UTR 35.0%
TTCTGACATTGTAAGATGGA+AGG - Chr8:83589777-83589796 MsG0880047227.01.T01:three_prime_UTR 35.0%
TTGGTTATGTTTGTGGTTGT+GGG + Chr8:83590389-83590408 None:intergenic 35.0%
TTTGGTTATGTTTGTGGTTG+TGG + Chr8:83590390-83590409 None:intergenic 35.0%
! GTAAAACTAGTTTGCACTGA+CGG - Chr8:83591606-83591625 MsG0880047227.01.T01:intron 35.0%
! TAAACTTCCTTTTGCAATCG+AGG - Chr8:83589947-83589966 MsG0880047227.01.T01:three_prime_UTR 35.0%
! TAGAGTTTTGCTCAAAAAGG+AGG - Chr8:83590100-83590119 MsG0880047227.01.T01:exon 35.0%
! TGGCCCTGTTCAAATTTTTA+AGG - Chr8:83590258-83590277 MsG0880047227.01.T01:intron 35.0%
! TTTTCAACTTATACTCGGAG+TGG + Chr8:83592502-83592521 None:intergenic 35.0%
!! AGATAGACTTGATGATGTAG+TGG + Chr8:83590820-83590839 None:intergenic 35.0%
!! ATATTCCACTTTTATGGCTC+TGG - Chr8:83590881-83590900 MsG0880047227.01.T01:intron 35.0%
!! ATTTAGGTTGCCCTTAACAA+TGG - Chr8:83592776-83592795 MsG0880047227.01.T01:exon 35.0%
!! CCTACTTTTGGTTATGTTTG+TGG + Chr8:83590396-83590415 None:intergenic 35.0%
!! GGCCAACAAATTTGTTAAGA+CGG + Chr8:83590243-83590262 None:intergenic 35.0%
!! TGAGTTTGATTTGCTCACTT+AGG - Chr8:83591040-83591059 MsG0880047227.01.T01:intron 35.0%
!! TTTAGGTTGCCCTTAACAAT+GGG - Chr8:83592777-83592796 MsG0880047227.01.T01:exon 35.0%
AACTTACTCGAAGCTATGGA+TGG + Chr8:83590143-83590162 None:intergenic 40.0%
AAGTTGTACCACTCGGAAAT+GGG - Chr8:83592542-83592561 MsG0880047227.01.T01:intron 40.0%
ACGATCCACTTCTTTATGCT+TGG + Chr8:83589810-83589829 None:intergenic 40.0%
CAACCTAAATTGCTTGGCTT+GGG + Chr8:83592766-83592785 None:intergenic 40.0%
CCCCAATTTCAAGACAAGTA+GGG + Chr8:83589911-83589930 None:intergenic 40.0%
CCCTACTTGTCTTGAAATTG+GGG - Chr8:83589908-83589927 MsG0880047227.01.T01:three_prime_UTR 40.0%
CTCTTTGCATGAAATCACGA+GGG + Chr8:83590073-83590092 None:intergenic 40.0%
GATCAACATAGAAGCTACGT+AGG - Chr8:83591175-83591194 MsG0880047227.01.T01:intron 40.0%
GGCCGTCTTAACAAATTTGT+TGG - Chr8:83590238-83590257 MsG0880047227.01.T01:intron 40.0%
TAAGGGCAACCTAAATTGCT+TGG + Chr8:83592772-83592791 None:intergenic 40.0%
TCATTTCCTTCCAAACGTGA+CGG + Chr8:83592674-83592693 None:intergenic 40.0%
TCCCCAATTTCAAGACAAGT+AGG + Chr8:83589912-83589931 None:intergenic 40.0%
TGGAATATCACAAGTAGTGC+TGG + Chr8:83590869-83590888 None:intergenic 40.0%
TTACCCAAGCCAAGCAATTT+AGG - Chr8:83592760-83592779 MsG0880047227.01.T01:CDS 40.0%
TTGTTGATCACAGCTTGACA+AGG - Chr8:83590043-83590062 MsG0880047227.01.T01:three_prime_UTR 40.0%
! AGTAGGGTTTTCGCATGATT+TGG + Chr8:83589895-83589914 None:intergenic 40.0%
! ATAAAGACCCTGTTCTAGAC+AGG - Chr8:83590216-83590235 MsG0880047227.01.T01:CDS 40.0%
! ATCAAGCTAGTCTAGAACCA+GGG + Chr8:83590575-83590594 None:intergenic 40.0%
! GGATGGACTTAGAGTAGAAT+TGG - Chr8:83590948-83590967 MsG0880047227.01.T01:intron 40.0%
! GTGTGTGTCCCTTTTTGTAA+TGG - Chr8:83591628-83591647 MsG0880047227.01.T01:intron 40.0%
! GTTTTGCTCAAAAAGGAGGA+TGG - Chr8:83590104-83590123 MsG0880047227.01.T01:exon 40.0%
! TAAAGACCCTGTTCTAGACA+GGG - Chr8:83590217-83590236 MsG0880047227.01.T01:CDS 40.0%
! TTAGGTTGCCCTTAACAATG+GGG - Chr8:83592778-83592797 MsG0880047227.01.T01:exon 40.0%
!! GAAATAGCATTCTGAAGCAG+CGG - Chr8:83591430-83591449 MsG0880047227.01.T01:intron 40.0%
!!! TATTTTGACTGTTTAGGCCG+TGG - Chr8:83591283-83591302 MsG0880047227.01.T01:intron 40.0%
AACCTGTCATCTTGCCATGT+AGG - Chr8:83591521-83591540 MsG0880047227.01.T01:intron 45.0%
AAGGGTCCTTCATGGTGTTT+AGG + Chr8:83592158-83592177 None:intergenic 45.0%
AATGTTACGCGTTGCAGAGA+TGG - Chr8:83592130-83592149 MsG0880047227.01.T01:intron 45.0%
ACTGGACCTTCCAACAAATC+TGG - Chr8:83592426-83592445 MsG0880047227.01.T01:intron 45.0%
AGGATTTAGGCACAGAGAGA+AGG - Chr8:83591738-83591757 MsG0880047227.01.T01:intron 45.0%
AGGGTCCTTCATGGTGTTTA+GGG + Chr8:83592157-83592176 None:intergenic 45.0%
ATAGATGATCTCTCTGGCGT+GGG + Chr8:83591903-83591922 None:intergenic 45.0%
ATGGTCCCTAAACACCATGA+AGG - Chr8:83592149-83592168 MsG0880047227.01.T01:intron 45.0%
ATGGTCGTCCCCATTGTTAA+GGG + Chr8:83592789-83592808 None:intergenic 45.0%
CCTCGTGATTTCATGCAAAG+AGG - Chr8:83590071-83590090 MsG0880047227.01.T01:three_prime_UTR 45.0%
CCTCTTTGCATGAAATCACG+AGG + Chr8:83590074-83590093 None:intergenic 45.0%
CCTTCCAACAAATCTGGGAA+AGG - Chr8:83592432-83592451 MsG0880047227.01.T01:CDS 45.0%
CTGGACCTTCCAACAAATCT+GGG - Chr8:83592427-83592446 MsG0880047227.01.T01:intron 45.0%
GAAAACATCACCGTCACGTT+TGG - Chr8:83592661-83592680 MsG0880047227.01.T01:CDS 45.0%
GAAGTTGTACCACTCGGAAA+TGG - Chr8:83592541-83592560 MsG0880047227.01.T01:intron 45.0%
GCAACCTAAATTGCTTGGCT+TGG + Chr8:83592767-83592786 None:intergenic 45.0%
GCGATTCTCAACTCGACATT+GGG + Chr8:83591965-83591984 None:intergenic 45.0%
GTTGCTGAAGGAAGACGAAT+CGG - Chr8:83589864-83589883 MsG0880047227.01.T01:three_prime_UTR 45.0%
TCCAACAAATCTGGGAAAGG+TGG - Chr8:83592435-83592454 MsG0880047227.01.T01:CDS 45.0%
TCCACCTTTCCCAGATTTGT+TGG + Chr8:83592439-83592458 None:intergenic 45.0%
TCTCAACTCGACATTGGGAA+GGG + Chr8:83591960-83591979 None:intergenic 45.0%
TGCGATTCTCAACTCGACAT+TGG + Chr8:83591966-83591985 None:intergenic 45.0%
TGGTCCTACCATGGTGTTTA+GGG + Chr8:83592374-83592393 None:intergenic 45.0%
TTCTCAACTCGACATTGGGA+AGG + Chr8:83591961-83591980 None:intergenic 45.0%
TTGGTCCTACCATGGTGTTT+AGG + Chr8:83592375-83592394 None:intergenic 45.0%
! GATCAAGCTAGTCTAGAACC+AGG + Chr8:83590576-83590595 None:intergenic 45.0%
! TTCAGTGGTGTGCCTACTTT+TGG + Chr8:83590408-83590427 None:intergenic 45.0%
! TTGTTGCTTGCTAAAGCCTG+TGG - Chr8:83590691-83590710 MsG0880047227.01.T01:intron 45.0%
!! CCTTTCCCAGATTTGTTGGA+AGG + Chr8:83592435-83592454 None:intergenic 45.0%
!!! AAAAAATTTTTTTATATGTT+AGG + Chr8:83590490-83590509 None:intergenic 5.0%
!!! ACATATAAAAAAATTTTTTT+CGG - Chr8:83590491-83590510 MsG0880047227.01.T01:intron 5.0%
ACATCACCGTCACGTTTGGA+AGG - Chr8:83592665-83592684 MsG0880047227.01.T01:CDS 50.0%
ACATTGGGAAGGGTCCTTCA+TGG + Chr8:83592166-83592185 None:intergenic 50.0%
CATAGATGATCTCTCTGGCG+TGG + Chr8:83591904-83591923 None:intergenic 50.0%
CATGGTCGTCCCCATTGTTA+AGG + Chr8:83592790-83592809 None:intergenic 50.0%
CCCAAACAAAAATCGAGGCC+CGG - Chr8:83590515-83590534 MsG0880047227.01.T01:intron 50.0%
CGAGTCCAGAGCCATAAAAG+TGG + Chr8:83590889-83590908 None:intergenic 50.0%
CTTAACAATGGGGACGACCA+TGG - Chr8:83592788-83592807 MsG0880047227.01.T01:exon 50.0%
GACCTACATGGCAAGATGAC+AGG + Chr8:83591526-83591545 None:intergenic 50.0%
GAGATGGTCCCTAAACACCA+TGG - Chr8:83592146-83592165 MsG0880047227.01.T01:intron 50.0%
GCACCAACAACAACTGCAAC+TGG - Chr8:83592408-83592427 MsG0880047227.01.T01:intron 50.0%
GGTCCAGTTGCAGTTGTTGT+TGG + Chr8:83592414-83592433 None:intergenic 50.0%
TCGGGCCCAAACAAAAATCG+AGG - Chr8:83590510-83590529 MsG0880047227.01.T01:intron 50.0%
TGATGGAAATGGGATGGCAC+TGG + Chr8:83590720-83590739 None:intergenic 50.0%
TGGTCCCTAAACACCATGGT+AGG - Chr8:83592367-83592386 MsG0880047227.01.T01:intron 50.0%
TGGTTGTGGGTTCAACTCCT+GGG + Chr8:83590376-83590395 None:intergenic 50.0%
! ACCGGGCCTCGATTTTTGTT+TGG + Chr8:83590519-83590538 None:intergenic 50.0%
! ACTCGACACTGGATTGGAAC+TGG - Chr8:83590904-83590923 MsG0880047227.01.T01:intron 50.0%
!! CCGGGCCTCGATTTTTGTTT+GGG + Chr8:83590518-83590537 None:intergenic 50.0%
!! CGGAAATGGGTTTTGCGCAT+AGG - Chr8:83592555-83592574 MsG0880047227.01.T01:intron 50.0%
CCATGGTAGGACCAAGAAGC+AGG - Chr8:83592380-83592399 MsG0880047227.01.T01:intron 55.0%
CCTGCTTCTTGGTCCTACCA+TGG + Chr8:83592383-83592402 None:intergenic 55.0%
CCTGGGTTCAACTCCCACTA+AGG + Chr8:83590359-83590378 None:intergenic 55.0%
CCTTAGTGGGAGTTGAACCC+AGG - Chr8:83590356-83590375 MsG0880047227.01.T01:intron 55.0%
CTCTGGACTCGACACTGGAT+TGG - Chr8:83590898-83590917 MsG0880047227.01.T01:intron 55.0%
GCGCAAAACCCATTTCCGAG+TGG + Chr8:83592553-83592572 None:intergenic 55.0%
GTGGTTGTGGGTTCAACTCC+TGG + Chr8:83590377-83590396 None:intergenic 55.0%
TGGTGCAGTCTCCTGCTTCT+TGG + Chr8:83592394-83592413 None:intergenic 55.0%
! AAGACGGCCCTGTCTAGAAC+AGG + Chr8:83590227-83590246 None:intergenic 55.0%
! AGACGGCCCTGTCTAGAACA+GGG + Chr8:83590226-83590245 None:intergenic 55.0%
! AGCTAGTCTAGAACCAGGGC+CGG + Chr8:83590571-83590590 None:intergenic 55.0%
!! TATGGCTCTGGACTCGACAC+TGG - Chr8:83590893-83590912 MsG0880047227.01.T01:intron 55.0%
TGACATAGCCCAGCCTCGCA+CGG - Chr8:83590538-83590557 MsG0880047227.01.T01:intron 60.0%
! GGGATGGCACTGGAATCCAC+AGG + Chr8:83590710-83590729 None:intergenic 60.0%
AGCCTCGCACGGCTTATGGC+CGG - Chr8:83590549-83590568 MsG0880047227.01.T01:intron 65.0%
CGAGGCTGGGCTATGTCACC+GGG + Chr8:83590536-83590555 None:intergenic 65.0%
GCCATAAGCCGTGCGAGGCT+GGG + Chr8:83590549-83590568 None:intergenic 65.0%
GCGAGGCTGGGCTATGTCAC+CGG + Chr8:83590537-83590556 None:intergenic 65.0%
GCCCAGCCTCGCACGGCTTA+TGG - Chr8:83590545-83590564 MsG0880047227.01.T01:intron 70.0%
GGCCATAAGCCGTGCGAGGC+TGG + Chr8:83590550-83590569 None:intergenic 70.0%
GCACGGCTTATGGCCGGCCC+TGG - Chr8:83590555-83590574 MsG0880047227.01.T01:intron 75.0%
GGCCGGCCATAAGCCGTGCG+AGG + Chr8:83590554-83590573 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 83589768 83592817 83589768 ID=MsG0880047227.01;Name=MsG0880047227.01
Chr8 mRNA 83589768 83592817 83589768 ID=MsG0880047227.01.T01;Parent=MsG0880047227.01;Name=MsG0880047227.01.T01;_AED=0.49;_eAED=0.49;_QI=24|1|1|1|1|1|3|347|136
Chr8 exon 83589768 83590248 83589768 ID=MsG0880047227.01.T01:exon:20813;Parent=MsG0880047227.01.T01
Chr8 exon 83592430 83592529 83592430 ID=MsG0880047227.01.T01:exon:20812;Parent=MsG0880047227.01.T01
Chr8 exon 83592617 83592817 83592617 ID=MsG0880047227.01.T01:exon:20811;Parent=MsG0880047227.01.T01
Chr8 five_prime_UTR 83592794 83592817 83592794 ID=MsG0880047227.01.T01:five_prime_utr;Parent=MsG0880047227.01.T01
Chr8 CDS 83592617 83592793 83592617 ID=MsG0880047227.01.T01:cds;Parent=MsG0880047227.01.T01
Chr8 CDS 83592430 83592529 83592430 ID=MsG0880047227.01.T01:cds;Parent=MsG0880047227.01.T01
Chr8 CDS 83590115 83590248 83590115 ID=MsG0880047227.01.T01:cds;Parent=MsG0880047227.01.T01
Chr8 three_prime_UTR 83589768 83590114 83589768 ID=MsG0880047227.01.T01:three_prime_utr;Parent=MsG0880047227.01.T01
Gene Sequence

>MsG0880047227.01.T01

ATGGAAGGTGAATTACCAAGCATAAAGAAGTGGATCGTATTATACCCTGTTTACATGAATTTCAAAAAGACTGTTGCTGAAGGAAGACGAATCGGAATCTCCAAATCATGCGAAAACCCTACTTGTCTTGAAATTGGGGATTGTTGCAATTATCTTAAACTTCCTTTTGCAATCGAGCTTGACAAGGCTTACCCTCGTGATTTCATGCAAAGAGGACGAGTTAGAGTTTTGCTCAAAAAGGAGGATGGAACTCTTATTAATCCATCCATAGCTTCGAGAAAGCAACTAATGTTACGCGTTGCAGAGATGGTCCCTAAACACCATGGTAGGACCAAGAAGCAGGAGACTGCACCAACAACAACTGCAACTGGACCTTCCAACAAATCTGGGAAAGGTGGAATTCTGTGTTAG
Protein sequence

>MsG0880047227.01.T01

MEGELPSIKKWIVLYPVYMNFKKTVAEGRRIGISKSCENPTCLEIGDCCNYLKLPFAIELDKAYPRDFMQRGRVRVLLKKEDGTLINPSIASRKQLMLRVAEMVPKHHGRTKKQETAPTTTATGPSNKSGKGGILC*