AlfalfaGEDB | MsG0780040157.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040157.01

KEGG: K03106
GO: GO:0005525 GO:0006614
PFAM: PF00448 PF02881

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040157.01.T01	XP_004486653.1	58.214	280	80	5	1	252	1	271	3.18E-92	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040157.01.T01	P49972	55.714	280	87	5	1	252	1	271	3.63E-90	278

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040157.01.T01	A0A1S2XEC4	58.214	280	80	5	1	252	1	271	1.52e-92	290
MsG0780040157.01.T01	A0A7N0TCW0	57.857	280	81	5	1	252	1	271	3.22e-93	289

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0780040157.01	MsG0280007044.01	PPI
MsG0780040157.01	MsG0780041128.01	PPI
MsG0780040157.01	MsG0880047227.01	PPI
MsG0780041138.01	MsG0780040157.01	PPI
MsG0880047227.01	MsG0780040157.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040157.01.T01	MTR_7g085470	60.219	274	65	7	1	252	1	252	2.03e-95	283
MsG0780040157.01.T01	MTR_4g010050	56.429	280	85	5	1	252	1	271	5.31e-93	283
MsG0780040157.01.T01	MTR_2g104050	56.071	280	86	5	1	252	1	271	5.21e-88	269
MsG0780040157.01.T01	MTR_7g085570	52.814	231	66	7	17	217	1	218	1.72e-65	206
MsG0780040157.01.T01	MTR_7g104890	28.713	202	112	5	76	251	7	202	1.36e-18	84.7
MsG0780040157.01.T01	MTR_7g104890	25.283	265	165	6	13	251	78	335	2.85e-18	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040157.01.T01	AT1G48900	52.500	280	96	5	1	252	1	271	2.68e-86	263
MsG0780040157.01.T01	AT1G48900	52.500	280	96	5	1	252	1	271	1.37e-85	263
MsG0780040157.01.T01	AT1G15310	50.357	280	102	5	1	252	1	271	2.30e-79	247
MsG0780040157.01.T01	AT5G49500	46.809	282	111	5	1	252	1	273	7.11e-70	223
MsG0780040157.01.T01	AT5G49500	69.565	115	30	1	138	252	42	151	1.51e-45	157
MsG0780040157.01.T01	AT5G03940	25.283	265	165	6	13	251	88	345	5.90e-17	80.5
MsG0780040157.01.T01	AT2G45770	31.148	183	90	4	100	251	163	340	1.32e-12	67.0

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Find 100 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAATCCGACGGAA+TGG	0.583898	7:-73812670	MsG0780040157.01.T01:five_prime_UTR
AAAATGGATGGCCATGCTAT+GGG	0.624594	7:-73811059	MsG0780040157.01.T01:CDS
AAAATGGGTCTAGCGGATTT+TGG	0.261549	7:-73812603	MsG0780040157.01.T01:CDS
AACAAATGGTGCAACGATGG+AGG	0.544048	7:+73810647	None:intergenic
AACACTTTGTGCAAATGCCA+TGG	0.643369	7:+73811106	None:intergenic
AACAGATTACTCCATTCCGT+CGG	0.612317	7:+73812659	None:intergenic
AACTTAGACCGATCCGACAC+CGG	0.546624	7:-73812747	None:intergenic
ACAAATGGTGCAACGATGGA+GGG	0.572588	7:+73810648	None:intergenic
ACAAGTGTTGTCATGTTTGT+TGG	0.414474	7:-73812300	MsG0780040157.01.T01:CDS
ACAGTTTGTCTGAAATGTGT+TGG	0.585711	7:-73810403	MsG0780040157.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATTCTCTCGGAAGT+GGG	-	Chr7:73811157-73811176	MsG0780040157.01.T01:CDS	30.0%
AACAAGAATGAAAAGTGGTT+GGG	+	Chr7:73811450-73811469	None:intergenic	30.0%
AATTACCACTCTCTTAATAC+AGG	+	Chr7:73811251-73811270	None:intergenic	30.0%
AGTTTCCATAATCAAGCAAA+TGG	+	Chr7:73811515-73811534	None:intergenic	30.0%
ATAAAGGGTAGTAATGTTTC+AGG	+	Chr7:73811083-73811102	None:intergenic	30.0%
ATAACAAGATCTGGTATCAA+AGG	+	Chr7:73811795-73811814	None:intergenic	30.0%
ATCAATCAAGCAAGCAAAAT+GGG	-	Chr7:73810422-73810441	MsG0780040157.01.T01:three_prime_UTR	30.0%
ATTACCACTCTCTTAATACA+GGG	+	Chr7:73811250-73811269	None:intergenic	30.0%
ATTATCAAAACTCATCTGCA+AGG	+	Chr7:73811479-73811498	None:intergenic	30.0%
ATTCAACAAGTTGTGTTTGA+TGG	-	Chr7:73810665-73810684	MsG0780040157.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	73810304	73812758	73810304	ID=MsG0780040157.01;Name=MsG0780040157.01
Chr7	mRNA	73810304	73812758	73810304	ID=MsG0780040157.01.T01;Parent=MsG0780040157.01;Name=MsG0780040157.01.T01;_AED=0.49;_eAED=0.49;_QI=136\|0.75\|0.6\|1\|0.75\|0.8\|5\|525\|256
Chr7	exon	73810304	73810871	73810304	ID=MsG0780040157.01.T01:exon:13309;Parent=MsG0780040157.01.T01
Chr7	exon	73811041	73811204	73811041	ID=MsG0780040157.01.T01:exon:13308;Parent=MsG0780040157.01.T01
Chr7	exon	73811296	73811462	73811296	ID=MsG0780040157.01.T01:exon:13307;Parent=MsG0780040157.01.T01
Chr7	exon	73812129	73812194	73812129	ID=MsG0780040157.01.T01:exon:13306;Parent=MsG0780040157.01.T01
Chr7	exon	73812292	73812758	73812292	ID=MsG0780040157.01.T01:exon:13305;Parent=MsG0780040157.01.T01
Chr7	five_prime_UTR	73812623	73812758	73812623	ID=MsG0780040157.01.T01:five_prime_utr;Parent=MsG0780040157.01.T01
Chr7	CDS	73812292	73812622	73812292	ID=MsG0780040157.01.T01:cds;Parent=MsG0780040157.01.T01
Chr7	CDS	73812129	73812194	73812129	ID=MsG0780040157.01.T01:cds;Parent=MsG0780040157.01.T01
Chr7	CDS	73811296	73811462	73811296	ID=MsG0780040157.01.T01:cds;Parent=MsG0780040157.01.T01
Chr7	CDS	73811041	73811204	73811041	ID=MsG0780040157.01.T01:cds;Parent=MsG0780040157.01.T01
Chr7	CDS	73810829	73810871	73810829	ID=MsG0780040157.01.T01:cds;Parent=MsG0780040157.01.T01
Chr7	three_prime_UTR	73810304	73810828	73810304	ID=MsG0780040157.01.T01:three_prime_utr;Parent=MsG0780040157.01.T01

Gene Sequence

>MsG0780040157.01.T01

ATGGGTCTAGCGGATTTTGGAGAGAGTATTTTGCGTGCTTTCGACAAGATGAGCAAGGAAACGGTGATCGATAAGGAAGTCCGTAAGCGTTGTTTCGGCGAGATTAGGCTAGCTTTCCTTCGTTCCTATATTGAACCCATGTTCACCCGAGACATGCGTGCTAAAATCAAGAACATTCTCATCAATCATCTTAATCTTGATGATCTCGACGCTGCTCGTAAGATGATTCAACAAGTTGTGTTTGATGGACTCTGCAAATTGTTGGAACCTAACCCTTCTTTCGTTCCCAAATCAGGGAAAACAAGTGTTGTCATGTTTGTTGGTGCTCAAGGTTGTGGAAAAACAACAACTTGTATACAATATGCAAATTATTATCAGAAGAAAGGATTAAAGACAGCCGCATTCCTCTATAGCTATACAGAGTTGGATCATGTCAAAATTGCTGTGAAAGGCGTGGAGAGATGCAAGGAAGAAAACTGTGATCTTATAATTGTTGATGCGAGTGGAGGGCACAAACAAGAAGATGCTCTTTTTGAAGAAATGCACCAAATTTCAAAAGCAACGAAACCAGATCTTGTTATACTGGTTACCGATGGCAACATTGGCCAGGATGGTTTTGATAATGATAGCCATAAGCAGGCCATGGCATTTGCACAAAGTGTTGACATTGGAGCTGTAATTCTTACTAAAATGGATGGCCATGCTATGGGTGGTGGTTCTCTTAGCGCTGTTGCAGCAGCAAAGAGTCCGGTCATTCATAGGAACTGGTGA

Protein sequence

>MsG0780040157.01.T01

MGLADFGESILRAFDKMSKETVIDKEVRKRCFGEIRLAFLRSYIEPMFTRDMRAKIKNILINHLNLDDLDAARKMIQQVVFDGLCKLLEPNPSFVPKSGKTSVVMFVGAQGCGKTTTCIQYANYYQKKGLKTAAFLYSYTELDHVKIAVKGVERCKEENCDLIIVDASGGHKQEDALFEEMHQISKATKPDLVILVTDGNIGQDGFDNDSHKQAMAFAQSVDIGAVILTKMDGHAMGGGSLSAVAAAKSPVIHRNW*