AlfalfaGEDB | MsG0880047372.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047372.01

KEGG: K15263
GO: GO:0003676 GO:0008270
PFAM: PF08790 PF12874

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047372.01.T01	XP_013458440.1	92.105	266	21	0	65	330	29	294	6.57E-175	496

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047372.01.T01	O64571	35.028	177	87	6	65	225	29	193	7.11E-18	87.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047372.01.T01	A0A072UT04	92.105	266	21	0	65	330	29	294	3.14e-175	496

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016246.01	MsG0880047372.01	0.805930	1.052236e-49	5.637791e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047372.01.T01	MTR_4g125720	92.105	266	21	0	65	330	29	294	7.95e-179	496
MsG0880047372.01.T01	MTR_4g125720	92.308	208	16	0	65	272	29	236	6.35e-139	394
MsG0880047372.01.T01	MTR_5g099270	91.071	56	4	1	1	55	7	62	3.93e-30	110
MsG0880047372.01.T01	MTR_0025s0050	87.500	48	6	0	1	48	137	184	9.92e-23	94.4
MsG0880047372.01.T01	MTR_3g032450	85.106	47	7	0	1	47	1	47	9.55e-22	87.8
MsG0880047372.01.T01	MTR_7g018160	87.500	48	6	0	1	48	202	249	1.13e-21	93.6
MsG0880047372.01.T01	MTR_1g107470	89.362	47	5	0	1	47	311	357	3.71e-21	93.2
MsG0880047372.01.T01	MTR_3g034020	89.362	47	5	0	1	47	358	404	5.07e-21	93.6
MsG0880047372.01.T01	MTR_3g109050	87.234	47	6	0	1	47	129	175	6.32e-20	87.0
MsG0880047372.01.T01	MTR_1g047970	58.228	79	28	1	1	79	163	236	7.89e-20	90.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047372.01.T01	AT2G19385	48.699	269	113	7	65	330	29	275	4.49e-61	196
MsG0880047372.01.T01	AT2G19380	35.028	177	87	6	65	225	29	193	7.25e-19	87.8
MsG0880047372.01.T01	AT2G19380	44.578	83	44	1	114	196	207	287	3.19e-13	70.9

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Find 78 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCATTCACCGGTTTC+AGG	0.267736	8:-85375126	None:intergenic
AAATGAAAATGAATTGAGCG+AGG	0.672838	8:+85375609	MsG0880047372.01.T01:CDS
AAATTATCTGTCTGGACTAG+TGG	0.555342	8:-85374998	None:intergenic
AACGTCCTCCGTGGTTCTGT+AGG	0.574054	8:+85374077	MsG0880047372.01.T01:CDS
AAGTATGGTCCAAAAGGCCA+AGG	0.606114	8:+85373971	MsG0880047372.01.T01:CDS
AATGACAATAAATAAAAGTC+AGG	0.434020	8:+85370814	MsG0880047372.01.T01:CDS
AATTCAACATACAAATTTCA+AGG	0.401997	8:-85375305	None:intergenic
ACACTGTCTAGAACTAGCAT+TGG	0.542344	8:-85376050	None:intergenic
ACATCAGTTGACGTGGAAAA+TGG	0.191316	8:+85375217	MsG0880047372.01.T01:CDS
ACGGATAATTTATTGTTGAT+TGG	0.350472	8:+85375916	MsG0880047372.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAAAATGAATTGAGCG+AGG	+	Chr8:85375609-85375628	MsG0880047372.01.T01:CDS	30.0%
AAATTGAGGATGGATATTAG+AGG	-	Chr8:85373135-85373154	None:intergenic	30.0%
AACTAAAGTTGCGTATTGTT+TGG	+	Chr8:85371064-85371083	MsG0880047372.01.T01:intron	30.0%
AAGCTACATAGCATAAACAA+CGG	-	Chr8:85372714-85372733	None:intergenic	30.0%
AAGCTATATGAACATGTCAT+AGG	+	Chr8:85372925-85372944	MsG0880047372.01.T01:intron	30.0%
AATTAAAAGTCAATGGTAGG+AGG	-	Chr8:85371165-85371184	None:intergenic	30.0%
ACACCCGTAAAAAATTTAAC+GGG	+	Chr8:85371894-85371913	MsG0880047372.01.T01:intron	30.0%
ACTAATTTGAGCTTACTTAC+CGG	-	Chr8:85372994-85373013	None:intergenic	30.0%
AGACAAAAATTAACGACTCT+TGG	-	Chr8:85375841-85375860	None:intergenic	30.0%
AGGATGTTGAAAAATTAGCT+GGG	+	Chr8:85374367-85374386	MsG0880047372.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	85370737	85376082	85370737	ID=MsG0880047372.01;Name=MsG0880047372.01
Chr8	mRNA	85370737	85376082	85370737	ID=MsG0880047372.01.T01;Parent=MsG0880047372.01;Name=MsG0880047372.01.T01;_AED=0.36;_eAED=0.36;_QI=0\|0.8\|0.83\|1\|1\|1\|6\|271\|330
Chr8	exon	85370737	85370931	85370737	ID=MsG0880047372.01.T01:exon:17701;Parent=MsG0880047372.01.T01
Chr8	exon	85372731	85372805	85372731	ID=MsG0880047372.01.T01:exon:17702;Parent=MsG0880047372.01.T01
Chr8	exon	85373968	85374098	85373968	ID=MsG0880047372.01.T01:exon:17703;Parent=MsG0880047372.01.T01
Chr8	exon	85374898	85375315	85374898	ID=MsG0880047372.01.T01:exon:17704;Parent=MsG0880047372.01.T01
Chr8	exon	85375535	85375645	85375535	ID=MsG0880047372.01.T01:exon:17705;Parent=MsG0880047372.01.T01
Chr8	exon	85375749	85376082	85375749	ID=MsG0880047372.01.T01:exon:17706;Parent=MsG0880047372.01.T01
Chr8	CDS	85370737	85370931	85370737	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	CDS	85372731	85372805	85372731	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	CDS	85373968	85374098	85373968	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	CDS	85374898	85375315	85374898	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	CDS	85375535	85375645	85375535	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	CDS	85375749	85375811	85375749	ID=MsG0880047372.01.T01:cds;Parent=MsG0880047372.01.T01
Chr8	three_prime_UTR	85375812	85376082	85375812	ID=MsG0880047372.01.T01:three_prime_utr;Parent=MsG0880047372.01.T01

Gene Sequence

>MsG0880047372.01.T01

ATGAATCTTATTCTGAGTGATCCAAGACTACCCTTCAAATTCAGGCGCAGACAATTTCCATTGACACTTTGTTTTGCAATGACAATAAATAAAAGTCAGGGTCAATCTTTATCTCGAGTGGGAGTTTATCTTCCTAACCCGTGTTCACGGATGGACAACTCTATGTCGTTGTCTCTCGAGTTAATTCTAGAAAAGCTTTCGTGCATTGACTGTGGACAGATGTTTGGTCGAGACACTGTTCAGAACCACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGAAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGCAAACAAAGGCTAGTCGTTGATATTAATGTGGGCTTAGCTGAACGTCCTCCGTGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCACTTCTTCTACATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCGTTCCATGCTTCGAAGCAACCACTAGTCCAGACAGATAATTTTGCGCCTGATGCAAAGGATGCAGTGGAGACGGGTTCTAATGATATGGCAAAAGATGACAAAATTTCAGAGCAGCCAAAGTTGCACGAGTCTTCTGAACAAAATAACCTGAAACCGGTGAATGAAGTTTCTTCCGAAAAGAAAAAGAGGAAACATGAAGCATTAGAGGGTGACGTTATTAAAAAAAACAAGAATGACACATCAGTTGACGTGGAAAATGGGGAAGTATTTCAGGGCGAGAAGGCAAGAGAGAGGAAAATAAAGTGGAAGAAGTTTATCAAAGCAGCCTTGAAATTTCATCCTGATGGATTGAAGATGAAGAAATTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTAGCATTGTAGTAAATGAAAATGAATTGAGCGAGGCGATTGAGCAGAAGATAAACTCCAGCTCCAACTTTGCAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA

Protein sequence

>MsG0880047372.01.T01

MNLILSDPRLPFKFRRRQFPLTLCFAMTINKSQGQSLSRVGVYLPNPCSRMDNSMSLSLELILEKLSCIDCGQMFGRDTVQNHTQCITEAEKYGPKGQGKTLNAAAAKPVKDGKQRLVVDINVGLAERPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASKQPLVQTDNFAPDAKDAVETGSNDMAKDDKISEQPKLHESSEQNNLKPVNEVSSEKKKRKHEALEGDVIKKNKNDTSVDVENGEVFQGEKARERKIKWKKFIKAALKFHPDGLKMKKLRKVVLKALQESSIVVNENELSEAIEQKINSSSNFAVENKYVRLVAKD*