AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016246.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016246.01.T01 MTR_3g086330 97.091 550 1 1 1 550 1 535 0.0 1086
MsG0380016246.01.T01 MTR_3g109925 36.245 538 314 9 17 546 14 530 3.98e-95 300
MsG0380016246.01.T01 MTR_2g013540 32.472 542 335 10 14 546 5 524 8.42e-85 274
MsG0380016246.01.T01 MTR_7g113470 32.710 535 335 8 14 546 6 517 7.54e-81 263
MsG0380016246.01.T01 MTR_7g067470 33.015 524 328 7 25 546 15 517 1.20e-80 262
MsG0380016246.01.T01 MTR_5g087560 30.515 544 347 9 10 545 6 526 2.74e-75 249
MsG0380016246.01.T01 MTR_3g109925 32.000 525 276 8 28 546 24 473 5.43e-73 240
MsG0380016246.01.T01 MTR_8g088270 31.810 547 329 11 20 545 11 534 2.74e-68 230
MsG0380016246.01.T01 MTR_7g406870 28.868 530 342 10 29 545 18 525 3.07e-56 197
MsG0380016246.01.T01 MTR_6g032870 28.545 536 350 10 18 545 10 520 3.82e-53 189
MsG0380016246.01.T01 MTR_1g030650 26.554 531 367 7 18 545 13 523 1.93e-51 184
MsG0380016246.01.T01 MTR_2g013540 30.504 377 251 7 176 546 4 375 1.08e-50 179
MsG0380016246.01.T01 MTR_7g406870 27.619 420 284 9 139 545 1 413 4.82e-35 137
MsG0380016246.01.T01 MTR_8g105970 30.976 297 175 7 203 492 62 335 1.03e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016246.01.T01 AT1G24510 86.909 550 57 1 1 550 1 535 0.0 993
MsG0380016246.01.T01 AT1G24510 89.979 469 47 0 82 550 14 482 0.0 886
MsG0380016246.01.T01 AT1G24510 89.978 459 46 0 92 550 1 459 0.0 868
MsG0380016246.01.T01 AT3G18190 35.294 527 313 8 28 546 28 534 7.16e-97 305
MsG0380016246.01.T01 AT5G26360 33.149 543 334 9 11 546 4 524 4.03e-82 267
MsG0380016246.01.T01 AT5G20890 32.634 524 330 7 25 546 15 517 2.13e-80 261
MsG0380016246.01.T01 AT3G11830 30.147 544 349 8 10 545 6 526 2.68e-72 241
MsG0380016246.01.T01 AT3G20050 31.261 547 332 10 20 545 11 534 9.88e-72 239
MsG0380016246.01.T01 AT3G11830 30.331 544 346 9 10 545 6 524 2.67e-71 238
MsG0380016246.01.T01 AT5G16070 28.053 524 343 9 34 545 23 524 3.26e-55 195
MsG0380016246.01.T01 AT3G02530 27.925 530 347 10 29 545 18 525 2.47e-53 189
MsG0380016246.01.T01 AT3G03960 25.368 544 357 8 18 545 16 526 2.28e-49 179
MsG0380016246.01.T01 AT1G67760 85.455 55 8 0 1 55 1 55 6.56e-26 102

Find 160 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATTTATGTTAAGATTT+TGG 0.164114 3:-80917044 MsG0380016246.01.T01:three_prime_UTR
TGAGTTTGGTGAAACTATTT+TGG 0.252642 3:-80920478 MsG0380016246.01.T01:CDS
AGAGAGGAAAGATGTTAATT+TGG 0.255619 3:-80920212 MsG0380016246.01.T01:CDS
TGAGCAAGCTGAGAGGCTTT+TGG 0.271412 3:-80920592 MsG0380016246.01.T01:CDS
AGGAAAGGTTGGTGGGAAAT+TGG 0.275960 3:-80920173 MsG0380016246.01.T01:CDS
ATTGCTAATAAGTTTGAGTT+TGG 0.316748 3:-80920492 MsG0380016246.01.T01:CDS
AAAACACCGCCATAGGGTTT+TGG 0.319043 3:-80921217 MsG0380016246.01.T01:five_prime_UTR
AATACGAGCGACGGCTTTAC+CGG 0.319084 3:+80921067 None:intergenic
ATCGACCTTTATCAGGAAAA+AGG 0.321680 3:+80916988 None:intergenic
GAAGATACTGAGTTGGTATA+TGG 0.326902 3:-80920151 MsG0380016246.01.T01:CDS
GGAACTTGCCAGCTGTTAGA+TGG 0.327806 3:-80919650 MsG0380016246.01.T01:CDS
CAGTATGCAATTAGAGCATT+TGG 0.332724 3:-80917565 MsG0380016246.01.T01:CDS
AATATGGTAAGATATTTAAA+TGG 0.334624 3:-80916730 MsG0380016246.01.T01:three_prime_UTR
TTGGATCTGATTAAAGTAGA+AGG 0.353109 3:-80920193 MsG0380016246.01.T01:CDS
TAGAGCATTTGGGGATGCTT+TGG 0.353755 3:-80917554 MsG0380016246.01.T01:CDS
CGCAATAATTCAATTGTGTA+TGG 0.358368 3:-80918808 MsG0380016246.01.T01:CDS
TCAATTTGCTTTGGCATTTG+AGG 0.361290 3:+80920100 None:intergenic
AAAACCCTATGGCGGTGTTT+TGG 0.367098 3:+80921219 None:intergenic
AAGATAATGTTTCAATTGGT+TGG 0.367949 3:+80917494 None:intergenic
AGTATGCAATTAGAGCATTT+GGG 0.374111 3:-80917564 MsG0380016246.01.T01:CDS
AACCCTTGTTATTTGCCAAT+GGG 0.374410 3:-80919709 MsG0380016246.01.T01:CDS
GAGGATTGCTGTTGAGAATC+TGG 0.374887 3:-80920520 MsG0380016246.01.T01:CDS
GCACGTCTTTGTATTGGAGT+TGG 0.378877 3:-80917022 MsG0380016246.01.T01:three_prime_UTR
GTCGAAAGCCAGCGCCATAT+TGG 0.382908 3:+80921178 None:intergenic
TATTCAAGGCTGGCATCGTT+AGG 0.383631 3:-80919228 MsG0380016246.01.T01:intron
AAATGATGGAGCAACGATAT+TGG 0.384183 3:-80920730 MsG0380016246.01.T01:CDS
ATACCCTTCAGCAATCCTAA+TGG 0.384256 3:+80920554 None:intergenic
AAGAACAATCGACCTTTATC+AGG 0.388339 3:+80916981 None:intergenic
GTTGCTATTATGCTACTAAC+TGG 0.393064 3:+80921319 None:intergenic
ACAGAAGATAATGTTTCAAT+TGG 0.393608 3:+80917490 None:intergenic
CACGTCTTTGTATTGGAGTT+GGG 0.398308 3:-80917021 MsG0380016246.01.T01:three_prime_UTR
TTAGCATCTTCAATTTGCTT+TGG 0.400918 3:+80920091 None:intergenic
CAACCCTTGTTATTTGCCAA+TGG 0.407278 3:-80919710 MsG0380016246.01.T01:CDS
CCGTACCTCCCTCGGTCCTA+AGG 0.408810 3:-80921042 MsG0380016246.01.T01:CDS
CCACCATCAGCTTCGCAATC+TGG 0.410693 3:+80920688 None:intergenic
GAATTGATTGCCATAGCAAC+AGG 0.418257 3:-80919609 MsG0380016246.01.T01:intron
ATCAATATCAACCTTATGCT+TGG 0.422485 3:+80920024 None:intergenic
GAAATCGGTGATGGAACTAC+TGG 0.427461 3:-80920642 MsG0380016246.01.T01:CDS
ACTGGGGTTGTTGTGTTGGC+TGG 0.427887 3:-80920624 MsG0380016246.01.T01:CDS
TCTCACTCTCACATTTCTCT+AGG 0.428747 3:-80921295 MsG0380016246.01.T01:five_prime_UTR
CGTGACCGTGTAAACCAATA+TGG 0.433266 3:-80921192 MsG0380016246.01.T01:exon
TCAAGATTGAGTTACATTGC+AGG 0.437085 3:-80916885 MsG0380016246.01.T01:three_prime_UTR
CTCACTCTCACATTTCTCTA+GGG 0.437936 3:-80921294 MsG0380016246.01.T01:five_prime_UTR
TACCCTTCAGCAATCCTAAT+GGG 0.440408 3:+80920555 None:intergenic
GGTGGAGTTGTCGAGGAGTC+AGG 0.444912 3:-80920670 MsG0380016246.01.T01:CDS
GAATCGAAGAACCGTCTTCG+TGG 0.447830 3:-80921119 MsG0380016246.01.T01:CDS
AAGAATTGTTCCTAGGTTCC+AGG 0.448072 3:-80919450 MsG0380016246.01.T01:CDS
ATTATGAATTCGTGAAGTCC+TGG 0.449769 3:-80916926 MsG0380016246.01.T01:three_prime_UTR
GGAGTTAACTGCAGAAAAGT+TGG 0.452554 3:-80919429 MsG0380016246.01.T01:CDS
CTCCCTCGGTCCTAAGGGTA+TGG 0.454270 3:-80921036 MsG0380016246.01.T01:CDS
AACTACTGGGGTTGTTGTGT+TGG 0.458410 3:-80920628 MsG0380016246.01.T01:CDS
ATGGGTTGGTGGTGTTGAGT+TGG 0.463335 3:-80919631 MsG0380016246.01.T01:CDS
TAGATACCCTGGTGTAGAAC+AGG 0.465187 3:-80918734 MsG0380016246.01.T01:intron
AATGGTGAAAATTGATTGAA+CGG 0.465702 3:-80916712 MsG0380016246.01.T01:three_prime_UTR
TCGAACCAAAACACCGCCAT+AGG 0.475402 3:-80921224 MsG0380016246.01.T01:five_prime_UTR
GGATGACAAAGTAGTCATAC+AGG 0.482426 3:+80920440 None:intergenic
TTGCCAGCTGTTAGATGGGT+TGG 0.487328 3:-80919645 MsG0380016246.01.T01:CDS
CGTATTCTCCGTACCTCCCT+CGG 0.488532 3:-80921050 MsG0380016246.01.T01:CDS
AACGTGGGATTCATCCCATT+AGG 0.490904 3:-80920569 MsG0380016246.01.T01:CDS
CTTCATCGTCAAAACCCCAT+TGG 0.502021 3:+80919694 None:intergenic
AATGCTCAATGTACAGCATT+CGG 0.502628 3:+80919179 None:intergenic
TTTGCTTTGGCATTTGAGGA+TGG 0.503760 3:+80920104 None:intergenic
AAGATATATTAGTACTCAGA+TGG 0.504953 3:+80917162 None:intergenic
AGCAACGATATTGGAGCAGA+TGG 0.506348 3:-80920721 MsG0380016246.01.T01:CDS
GCAGTTAACTCCTGGAACCT+AGG 0.506692 3:+80919440 None:intergenic
TGCTTTGGAGTCGATTCCTA+TGG 0.507540 3:-80917539 MsG0380016246.01.T01:CDS
GATTGCTGAAGGGTATGAAA+TGG 0.509686 3:-80920547 MsG0380016246.01.T01:CDS
TTGAGCATTGTGCAAACTCA+AGG 0.510053 3:-80919165 MsG0380016246.01.T01:CDS
GGCATTGATTGCAATGATGT+TGG 0.511857 3:-80917300 MsG0380016246.01.T01:CDS
GAGTTAACTGCAGAAAAGTT+GGG 0.512302 3:-80919428 MsG0380016246.01.T01:CDS
AGGAGTCAGGACTATGAAAT+CGG 0.512722 3:-80920657 MsG0380016246.01.T01:CDS
CAACAGTAGTTCAACTTCCC+AGG 0.514104 3:+80916908 None:intergenic
CAAATCATCTCTTGATGCAC+AGG 0.514162 3:-80919671 MsG0380016246.01.T01:CDS
ATTAAAGTAGAAGGAAAGGT+TGG 0.519658 3:-80920184 MsG0380016246.01.T01:CDS
TACATTGCAGGATTGTGTGC+TGG 0.519676 3:-80916873 MsG0380016246.01.T01:three_prime_UTR
CCAGCTGTTAGATGGGTTGG+TGG 0.521172 3:-80919642 MsG0380016246.01.T01:CDS
ATTCAAGGCTGGCATCGTTA+GGG 0.521490 3:-80919227 MsG0380016246.01.T01:intron
TGTTTGTTTGAAGCAAATGA+TGG 0.522169 3:-80920744 MsG0380016246.01.T01:CDS
TGAAAGCATACCTGTTGCTA+TGG 0.526459 3:+80919599 None:intergenic
AACGTCTTTGAGACTTTGAT+CGG 0.527660 3:-80917255 MsG0380016246.01.T01:CDS
GAACTTGCCAGCTGTTAGAT+GGG 0.529474 3:-80919649 MsG0380016246.01.T01:CDS
ATGGCCCTTGCTGAAAATAG+TGG 0.530306 3:-80917520 MsG0380016246.01.T01:CDS
AAGGTGGAAGAATTGTTCCT+AGG 0.532762 3:-80919457 MsG0380016246.01.T01:CDS
TGTGAAGTCTCAGCAAATAA+CGG 0.532861 3:-80917470 MsG0380016246.01.T01:intron
ACCCTTGTTATTTGCCAATG+GGG 0.538387 3:-80919708 MsG0380016246.01.T01:CDS
AGATATATTAGTACTCAGAT+GGG 0.538795 3:+80917163 None:intergenic
ATTAATGTTGCAGTGTGAAT+CGG 0.540958 3:-80920291 MsG0380016246.01.T01:intron
CAGATGATGACGTCACCGTC+GGG 0.542055 3:+80920996 None:intergenic
AGCATCTTATCCATACCCTT+AGG 0.545363 3:+80921026 None:intergenic
CGTGTAAACCAATATGGCGC+TGG 0.546887 3:-80921186 MsG0380016246.01.T01:exon
AACCCCATTGGCAAATAACA+AGG 0.547165 3:+80919706 None:intergenic
CGTACCTCCCTCGGTCCTAA+GGG 0.552162 3:-80921041 MsG0380016246.01.T01:CDS
GTCATACAGGTCTGAATCAA+CGG 0.552447 3:+80920453 None:intergenic
TCTGATTAAAGTAGAAGGAA+AGG 0.558317 3:-80920188 MsG0380016246.01.T01:CDS
TATTGCCGTGGAGGCAGCTG+CGG 0.559909 3:-80918758 MsG0380016246.01.T01:CDS
ATAACATTGTGCAATGGTGC+AGG 0.561438 3:-80916843 MsG0380016246.01.T01:three_prime_UTR
AAGTAGAAGGAAAGGTTGGT+GGG 0.562439 3:-80920180 MsG0380016246.01.T01:CDS
CATCCCATTAGGATTGCTGA+AGG 0.563109 3:-80920558 MsG0380016246.01.T01:CDS
CCTTAGGACCGAGGGAGGTA+CGG 0.563649 3:+80921042 None:intergenic
CGAACCAAAACACCGCCATA+GGG 0.564081 3:-80921223 MsG0380016246.01.T01:five_prime_UTR
CCACCAACCCATCTAACAGC+TGG 0.565017 3:+80919642 None:intergenic
AGCAGAGATTGCTGTGAAAG+CGG 0.565406 3:-80920254 MsG0380016246.01.T01:CDS
TATGTTGATTTGCAGGATGT+AGG 0.567292 3:-80919735 MsG0380016246.01.T01:intron
AATTCAATTGTGTATGGTGG+TGG 0.567875 3:-80918802 MsG0380016246.01.T01:CDS
GCGCTGGCTTTCGACGAGTA+CGG 0.568819 3:-80921170 MsG0380016246.01.T01:CDS
GCTGTAACAATATTCATTCG+TGG 0.573464 3:-80919142 MsG0380016246.01.T01:CDS
AAAGTAGAAGGAAAGGTTGG+TGG 0.573563 3:-80920181 MsG0380016246.01.T01:CDS
TTATGAATTCGTGAAGTCCT+GGG 0.577434 3:-80916925 MsG0380016246.01.T01:three_prime_UTR
ATCCATACCCTTAGGACCGA+GGG 0.577863 3:+80921034 None:intergenic
AGCTGATGGTGGAGTTGTCG+AGG 0.578499 3:-80920677 MsG0380016246.01.T01:CDS
AACTGCAGAAAAGTTGGGAA+AGG 0.579205 3:-80919423 MsG0380016246.01.T01:intron
AAATCGGTGATGGAACTACT+GGG 0.579865 3:-80920641 MsG0380016246.01.T01:CDS
CAGCGCCATATTGGTTTACA+CGG 0.580699 3:+80921187 None:intergenic
TCAAGATGCAGAATTGCTGA+TGG 0.586308 3:-80917118 MsG0380016246.01.T01:three_prime_UTR
TTGCTGTTGCTGATCTAGAG+AGG 0.592013 3:-80920228 MsG0380016246.01.T01:CDS
ATGCATACCTGTTCTACACC+AGG 0.592892 3:+80918727 None:intergenic
TCTTCGATTCTTGTTCTCTG+AGG 0.593724 3:+80921132 None:intergenic
CAGGACTATGAAATCGGTGA+TGG 0.595822 3:-80920651 MsG0380016246.01.T01:CDS
GAAATTGGAAGATACTGAGT+TGG 0.598794 3:-80920158 MsG0380016246.01.T01:CDS
TGGCTTTCGACGAGTACGGA+AGG 0.601110 3:-80921166 MsG0380016246.01.T01:CDS
GCAGCTGCGGATAGATACCC+TGG 0.603416 3:-80918745 MsG0380016246.01.T01:CDS
GTATGCAATTAGAGCATTTG+GGG 0.605163 3:-80917563 MsG0380016246.01.T01:CDS
TGGAGAAGTTTCAGACGTTG+AGG 0.608157 3:-80919997 MsG0380016246.01.T01:CDS
GAGCATCGAGACCACGAAGA+CGG 0.609862 3:+80921108 None:intergenic
TAAGGTTGATATTGATACAG+TGG 0.610608 3:-80920017 MsG0380016246.01.T01:CDS
CCAGATTGCGAAGCTGATGG+TGG 0.611857 3:-80920688 MsG0380016246.01.T01:CDS
TAACCAGATTGCGAAGCTGA+TGG 0.613821 3:-80920691 MsG0380016246.01.T01:CDS
ATATGGAATCATTGTTGACA+AGG 0.619909 3:-80920134 MsG0380016246.01.T01:CDS
TGCATGCTCTATTGCCGTGG+AGG 0.622636 3:-80918767 MsG0380016246.01.T01:CDS
TCTATCCGCAGCTGCCTCCA+CGG 0.622675 3:+80918753 None:intergenic
CAGAAAGCTAACATCTCCGC+CGG 0.623005 3:-80921086 MsG0380016246.01.T01:CDS
ACAGATGATGACGTCACCGT+CGG 0.624893 3:+80920995 None:intergenic
GGTCACGATCCAAAACCCTA+TGG 0.624975 3:+80921208 None:intergenic
TGAGCATTGTGCAAACTCAA+GGG 0.627646 3:-80919164 MsG0380016246.01.T01:CDS
GATTGCATGCTCTATTGCCG+TGG 0.631363 3:-80918770 MsG0380016246.01.T01:CDS
CTCTTCTTGAGCAAGCTGAG+AGG 0.642735 3:-80920599 MsG0380016246.01.T01:CDS
TTGCAATCAATGCCAAAGTG+AGG 0.646416 3:+80917309 None:intergenic
AGGTAACAAAATGATCATTG+AGG 0.649249 3:-80918881 MsG0380016246.01.T01:CDS
TGACATGGTTCAACAATGCA+AGG 0.652286 3:-80919951 MsG0380016246.01.T01:intron
ATGATGCATTGTGTGTGGCT+AGG 0.656157 3:-80918840 MsG0380016246.01.T01:CDS
ATCCCATTAGGATTGCTGAA+GGG 0.658268 3:-80920557 MsG0380016246.01.T01:CDS
TATCCATACCCTTAGGACCG+AGG 0.663023 3:+80921033 None:intergenic
TGTTCTCTGAGGATAATGAA+CGG 0.665836 3:+80921143 None:intergenic
GATATATTAGTACTCAGATG+GGG 0.666907 3:+80917164 None:intergenic
ACGAGCGACGGCTTTACCGG+CGG 0.667012 3:+80921070 None:intergenic
TGCATACCTGTTCTACACCA+GGG 0.668346 3:+80918728 None:intergenic
AATAATTCAATTGTGTATGG+TGG 0.668688 3:-80918805 MsG0380016246.01.T01:CDS
ATGTTGGCACCAATGACATG+AGG 0.676772 3:-80917284 MsG0380016246.01.T01:CDS
ACCCCATTGGCAAATAACAA+GGG 0.683763 3:+80919707 None:intergenic
AAGGGTATGAAATGGCGTCG+AGG 0.691726 3:-80920539 MsG0380016246.01.T01:CDS
TATTCATGATGCATTGTGTG+TGG 0.693925 3:-80918845 MsG0380016246.01.T01:CDS
TAAGCTATAACATTGTGCAA+TGG 0.697406 3:-80916849 MsG0380016246.01.T01:three_prime_UTR
AAGATGCTTCAAAGCCCCGA+CGG 0.703801 3:-80921011 MsG0380016246.01.T01:CDS
AGATGATGACGTCACCGTCG+GGG 0.704549 3:+80920997 None:intergenic
CACGATCCAAAACCCTATGG+CGG 0.707942 3:+80921211 None:intergenic
CATACCCTTAGGACCGAGGG+AGG 0.709998 3:+80921037 None:intergenic
GTAACAATATTCATTCGTGG+AGG 0.711015 3:-80919139 MsG0380016246.01.T01:intron
TGTTGGCACCAATGACATGA+GGG 0.722471 3:-80917283 MsG0380016246.01.T01:CDS
GGTACGGAGAATACGAGCGA+CGG 0.723999 3:+80921058 None:intergenic
AATCGGTGATGGAACTACTG+GGG 0.803459 3:-80920640 MsG0380016246.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAATCTTATAAAAATT+TGG + Chr3:80919896-80919915 None:intergenic 10.0%
!! TTATTTAATAAAAATAAGCA+GGG + Chr3:80919533-80919552 None:intergenic 10.0%
!! TTTATTTAATAAAAATAAGC+AGG + Chr3:80919534-80919553 None:intergenic 10.0%
!!! AAATTTTCCTTTTTTTTTAA+GGG - Chr3:80920210-80920229 MsG0380016246.01.T01:CDS 10.0%
!!! TTGAATATTATAATCTTTTA+TGG - Chr3:80919044-80919063 MsG0380016246.01.T01:intron 10.0%
!! AATATGGTAAGATATTTAAA+TGG - Chr3:80921304-80921323 MsG0380016246.01.T01:five_prime_UTR 15.0%
!! ATTAAAAAATAACCAAATGA+CGG + Chr3:80920416-80920435 None:intergenic 15.0%
!! TTTAAAAAAAGCAAAGTAAA+TGG + Chr3:80920354-80920373 None:intergenic 15.0%
!!! AATAGATTTTTTAGTGTTAA+CGG - Chr3:80917244-80917263 MsG0380016246.01.T01:CDS 15.0%
!!! AATTTTCCTTTTTTTTTAAG+GGG - Chr3:80920211-80920230 MsG0380016246.01.T01:CDS 15.0%
!!! ACTTTGCTTTTTTTAAATAA+TGG - Chr3:80920357-80920376 MsG0380016246.01.T01:intron 15.0%
!!! ATCTTATAAAAATTTGGTTT+CGG + Chr3:80919890-80919909 None:intergenic 15.0%
!!! CAAATTTTCCTTTTTTTTTA+AGG - Chr3:80920209-80920228 MsG0380016246.01.T01:CDS 15.0%
!!! GATTATAAATTTTAAGCATT+TGG - Chr3:80920110-80920129 MsG0380016246.01.T01:CDS 15.0%
!!! TTTTATTCTATTGTTTTGTA+TGG + Chr3:80919821-80919840 None:intergenic 15.0%
!! AAATGAAATTAAGAGAGAAA+TGG + Chr3:80917073-80917092 None:intergenic 20.0%
!! AAATTTATAATCCTTGTGAT+TGG + Chr3:80920102-80920121 None:intergenic 20.0%
!! AATTATAATTTACCGTCATT+TGG - Chr3:80920401-80920420 MsG0380016246.01.T01:intron 20.0%
!! AGAAGATCCAAAAAAAAAAA+AGG + Chr3:80918681-80918700 None:intergenic 20.0%
!! ATCCAAAAAAAAAAAAGGAA+AGG + Chr3:80918676-80918695 None:intergenic 20.0%
!! CATATTATATTATTAACCCA+CGG - Chr3:80919327-80919346 MsG0380016246.01.T01:intron 20.0%
!! GATCTAATTAATTTCCAAAT+TGG - Chr3:80919590-80919609 MsG0380016246.01.T01:intron 20.0%
!! GTTAATTTATGATCTATTCA+AGG - Chr3:80918792-80918811 MsG0380016246.01.T01:CDS 20.0%
!! GTTACAATAATTAGTTACAT+AGG - Chr3:80917177-80917196 MsG0380016246.01.T01:CDS 20.0%
!! TAATTTCCAAATTGGAAAAA+GGG - Chr3:80919598-80919617 MsG0380016246.01.T01:intron 20.0%
!! TCTATTCTACTAAATTAGTA+CGG + Chr3:80917230-80917249 None:intergenic 20.0%
!! TTAATTTCCAAATTGGAAAA+AGG - Chr3:80919597-80919616 MsG0380016246.01.T01:intron 20.0%
!! TTGTGGTTAATTTCATAATT+TGG - Chr3:80919495-80919514 MsG0380016246.01.T01:intron 20.0%
!!! ATAGACAAAAATTCTGAAAA+TGG - Chr3:80919708-80919727 MsG0380016246.01.T01:CDS 20.0%
!!! ATTTTCCTTTTTTTTTAAGG+GGG - Chr3:80920212-80920231 MsG0380016246.01.T01:CDS 20.0%
!!! CAATTATGATTCTTTTGTTT+TGG - Chr3:80918456-80918475 MsG0380016246.01.T01:intron 20.0%
!!! GATTTTCTTTTTGTAAATGA+AGG - Chr3:80918558-80918577 MsG0380016246.01.T01:intron 20.0%
!!! GCATATTTATGTTAAGATTT+TGG - Chr3:80920990-80921009 MsG0380016246.01.T01:intron 20.0%
!!! TATGTAATTAGTCATCTTTT+AGG - Chr3:80918965-80918984 MsG0380016246.01.T01:intron 20.0%
!!! TTTTTTTACCTATCTAAGTA+GGG - Chr3:80918148-80918167 MsG0380016246.01.T01:intron 20.0%
!!! TTTTTTTTACCTATCTAAGT+AGG - Chr3:80918147-80918166 MsG0380016246.01.T01:intron 20.0%
! AAAAAAAAAAGGAAAGGTCA+AGG + Chr3:80918670-80918689 None:intergenic 25.0%
! AAACGCGTAAAAAAGATATT+AGG + Chr3:80917134-80917153 None:intergenic 25.0%
! AACGCGTAAAAAAGATATTA+GGG + Chr3:80917133-80917152 None:intergenic 25.0%
! AAGATAATGTTTCAATTGGT+TGG + Chr3:80920543-80920562 None:intergenic 25.0%
! AAGATATATTAGTACTCAGA+TGG + Chr3:80920875-80920894 None:intergenic 25.0%
! AATAATTCAATTGTGTATGG+TGG - Chr3:80919229-80919248 MsG0380016246.01.T01:intron 25.0%
! AATGGTGAAAATTGATTGAA+CGG - Chr3:80921322-80921341 MsG0380016246.01.T01:five_prime_UTR 25.0%
! AATTTCCAAATTGGAAAAAG+GGG - Chr3:80919599-80919618 MsG0380016246.01.T01:intron 25.0%
! ACAGAAGATAATGTTTCAAT+TGG + Chr3:80920547-80920566 None:intergenic 25.0%
! ACCACTAAAACAAAATGTTA+AGG + Chr3:80918932-80918951 None:intergenic 25.0%
! AGATATATTAGTACTCAGAT+GGG + Chr3:80920874-80920893 None:intergenic 25.0%
! ATTGTACTTGTCTAAATGAT+TGG + Chr3:80920296-80920315 None:intergenic 25.0%
! CAAAGTAAATGGTCTTTATT+TGG + Chr3:80920343-80920362 None:intergenic 25.0%
! GTAAGCCATAAAAAGAAATA+AGG + Chr3:80918648-80918667 None:intergenic 25.0%
! TATTGGTATTTGAGCTAATT+GGG - Chr3:80918194-80918213 MsG0380016246.01.T01:intron 25.0%
! TGTTAACACTTAACAATAAC+AGG + Chr3:80919461-80919480 None:intergenic 25.0%
! TTCACATTATAAGAATGTCT+TGG - Chr3:80920156-80920175 MsG0380016246.01.T01:CDS 25.0%
! TTGAATTTACTAGCAATTGT+GGG - Chr3:80918704-80918723 MsG0380016246.01.T01:intron 25.0%
! TTTGAATTTACTAGCAATTG+TGG - Chr3:80918703-80918722 MsG0380016246.01.T01:intron 25.0%
!! AATACTCAAGAGATAGATTT+TGG + Chr3:80920043-80920062 None:intergenic 25.0%
!! ACAAAAATTCTGAAAATGGA+GGG - Chr3:80919712-80919731 MsG0380016246.01.T01:CDS 25.0%
!! ATTGCTAATAAGTTTGAGTT+TGG - Chr3:80917542-80917561 MsG0380016246.01.T01:CDS 25.0%
!! GAATTTTTGTCTATGAACAT+TGG + Chr3:80919702-80919721 None:intergenic 25.0%
!! TTAAAGTCGTTCTAAACTTT+AGG - Chr3:80919373-80919392 MsG0380016246.01.T01:intron 25.0%
!! TTTCTTTTTGTAAATGAAGG+TGG - Chr3:80918561-80918580 MsG0380016246.01.T01:intron 25.0%
!!! ACAGAAATATTTTGATGACA+TGG - Chr3:80918068-80918087 MsG0380016246.01.T01:intron 25.0%
!!! GACCTTTCCTTTTTTTTTTT+TGG - Chr3:80918671-80918690 MsG0380016246.01.T01:intron 25.0%
!!! GATATTAGGGTTTGATTTTA+CGG + Chr3:80917120-80917139 None:intergenic 25.0%
!!! GATTATTTATGTTGATTTGC+AGG - Chr3:80918292-80918311 MsG0380016246.01.T01:intron 25.0%
!!! GTGTGTTTTAGAAAACAATA+TGG - Chr3:80921288-80921307 MsG0380016246.01.T01:five_prime_UTR 25.0%
!!! TCCTTAACATTTTGTTTTAG+TGG - Chr3:80918928-80918947 MsG0380016246.01.T01:intron 25.0%
!!! TTAATGCTTTTGTTGATTGA+TGG - Chr3:80920431-80920450 MsG0380016246.01.T01:intron 25.0%
AAACAGACAACAAGAATCAT+TGG + Chr3:80918751-80918770 None:intergenic 30.0%
AAATGAACTGTTAGTGTATC+AGG - Chr3:80919738-80919757 MsG0380016246.01.T01:intron 30.0%
AATTGTGGGGAAAGTAATTT+AGG - Chr3:80918718-80918737 MsG0380016246.01.T01:intron 30.0%
AGACTAAATATGGAGATAGA+TGG + Chr3:80919671-80919690 None:intergenic 30.0%
AGAGAGGAAAGATGTTAATT+TGG - Chr3:80917822-80917841 MsG0380016246.01.T01:intron 30.0%
AGGTAACAAAATGATCATTG+AGG - Chr3:80919153-80919172 MsG0380016246.01.T01:CDS 30.0%
ATATGGAATCATTGTTGACA+AGG - Chr3:80917900-80917919 MsG0380016246.01.T01:intron 30.0%
ATCAATATCAACCTTATGCT+TGG + Chr3:80918013-80918032 None:intergenic 30.0%
ATTAAAGTAGAAGGAAAGGT+TGG - Chr3:80917850-80917869 MsG0380016246.01.T01:intron 30.0%
ATTAATGTTGCAGTGTGAAT+CGG - Chr3:80917743-80917762 MsG0380016246.01.T01:intron 30.0%
ATTGTATAAACTTCATACCC+TGG + Chr3:80919793-80919812 None:intergenic 30.0%
ATTTATGATCTATTCAAGGC+TGG - Chr3:80918796-80918815 MsG0380016246.01.T01:CDS 30.0%
CGCAATAATTCAATTGTGTA+TGG - Chr3:80919226-80919245 MsG0380016246.01.T01:intron 30.0%
GATATATTAGTACTCAGATG+GGG + Chr3:80920873-80920892 None:intergenic 30.0%
GTGTTTGCACTTTATTGAAA+AGG - Chr3:80918270-80918289 MsG0380016246.01.T01:intron 30.0%
TAAGCTATAACATTGTGCAA+TGG - Chr3:80921185-80921204 MsG0380016246.01.T01:exon 30.0%
TACGGTTTGATTGAATAGAA+CGG + Chr3:80917102-80917121 None:intergenic 30.0%
TCCCAAATAAATTAAACCGT+GGG + Chr3:80919346-80919365 None:intergenic 30.0%
TCTGATTAAAGTAGAAGGAA+AGG - Chr3:80917846-80917865 MsG0380016246.01.T01:intron 30.0%
TGAATTTACTAGCAATTGTG+GGG - Chr3:80918705-80918724 MsG0380016246.01.T01:intron 30.0%
TTGGATCTGATTAAAGTAGA+AGG - Chr3:80917841-80917860 MsG0380016246.01.T01:intron 30.0%
! AACCCACGGTTTAATTTATT+TGG - Chr3:80919341-80919360 MsG0380016246.01.T01:intron 30.0%
! ACAATAGATCTTTGACTTTG+TGG - Chr3:80919478-80919497 MsG0380016246.01.T01:intron 30.0%
! ACCCACGGTTTAATTTATTT+GGG - Chr3:80919342-80919361 MsG0380016246.01.T01:intron 30.0%
! AGTATGCAATTAGAGCATTT+GGG - Chr3:80920470-80920489 MsG0380016246.01.T01:CDS 30.0%
! CAAAAATTCTGAAAATGGAG+GGG - Chr3:80919713-80919732 MsG0380016246.01.T01:CDS 30.0%
! GACAAAAATTCTGAAAATGG+AGG - Chr3:80919711-80919730 MsG0380016246.01.T01:CDS 30.0%
! GTATTGGTATTTGAGCTAAT+TGG - Chr3:80918193-80918212 MsG0380016246.01.T01:intron 30.0%
! GTTTTCCTTTTTCCTGATAA+AGG - Chr3:80921041-80921060 MsG0380016246.01.T01:CDS 30.0%
! TGTTTGTTTGAAGCAAATGA+TGG - Chr3:80917290-80917309 MsG0380016246.01.T01:CDS 30.0%
! TTAGCATCTTCAATTTGCTT+TGG + Chr3:80917946-80917965 None:intergenic 30.0%
! TTCACTAAACGCTTACATTT+TGG + Chr3:80917618-80917637 None:intergenic 30.0%
! TTTATCCCCTTTTTCCAATT+TGG + Chr3:80919607-80919626 None:intergenic 30.0%
!! TAAGGTTGATATTGATACAG+TGG - Chr3:80918017-80918036 MsG0380016246.01.T01:intron 30.0%
!! TGAGTTTGGTGAAACTATTT+TGG - Chr3:80917556-80917575 MsG0380016246.01.T01:CDS 30.0%
!! TTAGTCATCTTTTAGGAGAT+AGG - Chr3:80918972-80918991 MsG0380016246.01.T01:intron 30.0%
!!! CTCAGCCTTATTTCTTTTTA+TGG - Chr3:80918640-80918659 MsG0380016246.01.T01:intron 30.0%
AAAGTCAATGTCATGATGTG+CGG + Chr3:80920682-80920701 None:intergenic 35.0%
AAGAACAATCGACCTTTATC+AGG + Chr3:80921056-80921075 None:intergenic 35.0%
AATGCTCAATGTACAGCATT+CGG + Chr3:80918858-80918877 None:intergenic 35.0%
AATTCAATTGTGTATGGTGG+TGG - Chr3:80919232-80919251 MsG0380016246.01.T01:intron 35.0%
AGTGAATCGATACATGATCT+TGG - Chr3:80917632-80917651 MsG0380016246.01.T01:intron 35.0%
ATCGACCTTTATCAGGAAAA+AGG + Chr3:80921049-80921068 None:intergenic 35.0%
ATGCTCTAATTGCATACTGT+AGG + Chr3:80920468-80920487 None:intergenic 35.0%
ATTATGAATTCGTGAAGTCC+TGG - Chr3:80921108-80921127 MsG0380016246.01.T01:CDS 35.0%
CTCCCAAATAAATTAAACCG+TGG + Chr3:80919347-80919366 None:intergenic 35.0%
GAAATTGGAAGATACTGAGT+TGG - Chr3:80917876-80917895 MsG0380016246.01.T01:intron 35.0%
GAGTTAACTGCAGAAAAGTT+GGG - Chr3:80918606-80918625 MsG0380016246.01.T01:intron 35.0%
GCATGAGCATAGTAATAATC+AGG + Chr3:80920616-80920635 None:intergenic 35.0%
GCTGTAACAATATTCATTCG+TGG - Chr3:80918892-80918911 MsG0380016246.01.T01:intron 35.0%
GGAAAATTTGAGAAGAGTTG+TGG + Chr3:80920199-80920218 None:intergenic 35.0%
GGCAAAGTGAAGACTAAATA+TGG + Chr3:80919681-80919700 None:intergenic 35.0%
GGCATGTAAATTGACACAAA+TGG - Chr3:80920264-80920283 MsG0380016246.01.T01:CDS 35.0%
GTAACAATATTCATTCGTGG+AGG - Chr3:80918895-80918914 MsG0380016246.01.T01:intron 35.0%
GTCAATTTACATGCCTACTT+TGG + Chr3:80920259-80920278 None:intergenic 35.0%
GTGATCAAAAGTTCATCTGA+AGG - Chr3:80919968-80919987 MsG0380016246.01.T01:CDS 35.0%
TAATAACCACACCAATCACA+AGG - Chr3:80920088-80920107 MsG0380016246.01.T01:CDS 35.0%
TATAATCCTTGTGATTGGTG+TGG + Chr3:80920097-80920116 None:intergenic 35.0%
TATTCATGATGCATTGTGTG+TGG - Chr3:80919189-80919208 MsG0380016246.01.T01:CDS 35.0%
TCAAGATTGAGTTACATTGC+AGG - Chr3:80921149-80921168 MsG0380016246.01.T01:CDS 35.0%
TCATACCCTGGACAAAATAA+AGG + Chr3:80919781-80919800 None:intergenic 35.0%
TCTGATATGTTGCAGTTTCT+GGG + Chr3:80919867-80919886 None:intergenic 35.0%
TGCTCTAATTGCATACTGTA+GGG + Chr3:80920467-80920486 None:intergenic 35.0%
TGTGAAGTCTCAGCAAATAA+CGG - Chr3:80920564-80920583 MsG0380016246.01.T01:CDS 35.0%
TTATGAATTCGTGAAGTCCT+GGG - Chr3:80921109-80921128 MsG0380016246.01.T01:CDS 35.0%
TTTGGCCCCCTTAAAAAAAA+AGG + Chr3:80920220-80920239 None:intergenic 35.0%
! AAATGATGGAGCAACGATAT+TGG - Chr3:80917304-80917323 MsG0380016246.01.T01:CDS 35.0%
! CAGTATGCAATTAGAGCATT+TGG - Chr3:80920469-80920488 MsG0380016246.01.T01:CDS 35.0%
! GTATGCAATTAGAGCATTTG+GGG - Chr3:80920471-80920490 MsG0380016246.01.T01:CDS 35.0%
! GTTGCTATTATGCTACTAAC+TGG + Chr3:80916718-80916737 None:intergenic 35.0%
! TCAATTTGCTTTGGCATTTG+AGG + Chr3:80917937-80917956 None:intergenic 35.0%
! TGTTCTCTGAGGATAATGAA+CGG + Chr3:80916894-80916913 None:intergenic 35.0%
! TTCATCTGAAGGTATGAAGA+GGG - Chr3:80919979-80919998 MsG0380016246.01.T01:CDS 35.0%
!! AAAAAAGCTGCCTTGTTGTT+TGG - Chr3:80919123-80919142 MsG0380016246.01.T01:intron 35.0%
!! AACCCTTGTTATTTGCCAAT+GGG - Chr3:80918325-80918344 MsG0380016246.01.T01:intron 35.0%
!! AACGTCTTTGAGACTTTGAT+CGG - Chr3:80920779-80920798 MsG0380016246.01.T01:CDS 35.0%
!! ATCGTTAGGGAAAAAGCATT+TGG - Chr3:80918820-80918839 MsG0380016246.01.T01:CDS 35.0%
!! ATTTTGGCACGTCTTTGTAT+TGG - Chr3:80921006-80921025 MsG0380016246.01.T01:CDS 35.0%
!! GAAGATACTGAGTTGGTATA+TGG - Chr3:80917883-80917902 MsG0380016246.01.T01:intron 35.0%
!! TATGTTGATTTGCAGGATGT+AGG - Chr3:80918299-80918318 MsG0380016246.01.T01:intron 35.0%
!! TCAACCTTATGCTTGGTTTT+TGG + Chr3:80918006-80918025 None:intergenic 35.0%
!!! CTTGTCCTTTATTTTGTCCA+GGG - Chr3:80919773-80919792 MsG0380016246.01.T01:intron 35.0%
!!! TCTTGTCCTTTATTTTGTCC+AGG - Chr3:80919772-80919791 MsG0380016246.01.T01:intron 35.0%
!!! TTATGCTTGGTTTTTGGCTT+CGG + Chr3:80918000-80918019 None:intergenic 35.0%
AAAGTAGAAGGAAAGGTTGG+TGG - Chr3:80917853-80917872 MsG0380016246.01.T01:intron 40.0%
AACCCCATTGGCAAATAACA+AGG + Chr3:80918331-80918350 None:intergenic 40.0%
AACTGCAGAAAAGTTGGGAA+AGG - Chr3:80918611-80918630 MsG0380016246.01.T01:intron 40.0%
AAGAATTGTTCCTAGGTTCC+AGG - Chr3:80918584-80918603 MsG0380016246.01.T01:intron 40.0%
AAGGTGGAAGAATTGTTCCT+AGG - Chr3:80918577-80918596 MsG0380016246.01.T01:intron 40.0%
AAGTGCAAACACATTCTAGC+AGG + Chr3:80918262-80918281 None:intergenic 40.0%
AATATTCATTCGTGGAGGTG+AGG - Chr3:80918900-80918919 MsG0380016246.01.T01:intron 40.0%
ACCCCATTGGCAAATAACAA+GGG + Chr3:80918330-80918349 None:intergenic 40.0%
AGCATCTTATCCATACCCTT+AGG + Chr3:80917011-80917030 None:intergenic 40.0%
AGGAGTCAGGACTATGAAAT+CGG - Chr3:80917377-80917396 MsG0380016246.01.T01:intron 40.0%
ATAACATTGTGCAATGGTGC+AGG - Chr3:80921191-80921210 MsG0380016246.01.T01:exon 40.0%
ATACCCTTCAGCAATCCTAA+TGG + Chr3:80917483-80917502 None:intergenic 40.0%
ATCCCATTAGGATTGCTGAA+GGG - Chr3:80917477-80917496 MsG0380016246.01.T01:CDS 40.0%
ATGGTTCAACAATGCAAGGT+TGG - Chr3:80918087-80918106 MsG0380016246.01.T01:intron 40.0%
ATTTACATGCCTACTTTGGC+AGG + Chr3:80920255-80920274 None:intergenic 40.0%
CAAATCATCTCTTGATGCAC+AGG - Chr3:80918363-80918382 MsG0380016246.01.T01:intron 40.0%
CACGTCTTTGTATTGGAGTT+GGG - Chr3:80921013-80921032 MsG0380016246.01.T01:CDS 40.0%
CACTTGCTCTTTACTGGTAT+TGG - Chr3:80918177-80918196 MsG0380016246.01.T01:intron 40.0%
CAGGAGAAAAATCCTCACTT+TGG - Chr3:80920713-80920732 MsG0380016246.01.T01:CDS 40.0%
CTCACTCTCACATTTCTCTA+GGG - Chr3:80916740-80916759 MsG0380016246.01.T01:three_prime_UTR 40.0%
GAAGCCAAAAACCAAGCATA+AGG - Chr3:80917999-80918018 MsG0380016246.01.T01:intron 40.0%
GAATTGATTGCCATAGCAAC+AGG - Chr3:80918425-80918444 MsG0380016246.01.T01:intron 40.0%
GCTCTAATTGCATACTGTAG+GGG + Chr3:80920466-80920485 None:intergenic 40.0%
GCTGAAAGTGAATGTTCAAG+AGG + Chr3:80919413-80919432 None:intergenic 40.0%
GGAGTTAACTGCAGAAAAGT+TGG - Chr3:80918605-80918624 MsG0380016246.01.T01:intron 40.0%
GGATGACAAAGTAGTCATAC+AGG + Chr3:80917597-80917616 None:intergenic 40.0%
GTCATACAGGTCTGAATCAA+CGG + Chr3:80917584-80917603 None:intergenic 40.0%
GTCTGATATGTTGCAGTTTC+TGG + Chr3:80919868-80919887 None:intergenic 40.0%
TACCCTTCAGCAATCCTAAT+GGG + Chr3:80917482-80917501 None:intergenic 40.0%
TCAAGATGCAGAATTGCTGA+TGG - Chr3:80920916-80920935 MsG0380016246.01.T01:intron 40.0%
TCTCACTCTCACATTTCTCT+AGG - Chr3:80916739-80916758 MsG0380016246.01.T01:three_prime_UTR 40.0%
TCTTCGATTCTTGTTCTCTG+AGG + Chr3:80916905-80916924 None:intergenic 40.0%
TGACATGGTTCAACAATGCA+AGG - Chr3:80918083-80918102 MsG0380016246.01.T01:intron 40.0%
TTGCAATCAATGCCAAAGTG+AGG + Chr3:80920728-80920747 None:intergenic 40.0%
TTTGCTTTGGCATTTGAGGA+TGG + Chr3:80917933-80917952 None:intergenic 40.0%
! AAGTAGAAGGAAAGGTTGGT+GGG - Chr3:80917854-80917873 MsG0380016246.01.T01:intron 40.0%
! ACTTTTCTGCAGTTAACTCC+TGG + Chr3:80918605-80918624 None:intergenic 40.0%
! GAGACCACTATTTTCAGCAA+GGG + Chr3:80920521-80920540 None:intergenic 40.0%
! GATTGCTGAAGGGTATGAAA+TGG - Chr3:80917487-80917506 MsG0380016246.01.T01:CDS 40.0%
! GTTCATCTGAAGGTATGAAG+AGG - Chr3:80919978-80919997 MsG0380016246.01.T01:CDS 40.0%
! TGAAAGCATACCTGTTGCTA+TGG + Chr3:80918438-80918457 None:intergenic 40.0%
! TGAGCATTGTGCAAACTCAA+GGG - Chr3:80918870-80918889 MsG0380016246.01.T01:CDS 40.0%
! TTGAGCATTGTGCAAACTCA+AGG - Chr3:80918869-80918888 MsG0380016246.01.T01:CDS 40.0%
!! AAATCGGTGATGGAACTACT+GGG - Chr3:80917393-80917412 MsG0380016246.01.T01:intron 40.0%
!! ACCCTTGTTATTTGCCAATG+GGG - Chr3:80918326-80918345 MsG0380016246.01.T01:intron 40.0%
!! CAACCCTTGTTATTTGCCAA+TGG - Chr3:80918324-80918343 MsG0380016246.01.T01:intron 40.0%
!! GGCATTGATTGCAATGATGT+TGG - Chr3:80920734-80920753 MsG0380016246.01.T01:CDS 40.0%
!! GTCATCTTTTAGGAGATAGG+TGG - Chr3:80918975-80918994 MsG0380016246.01.T01:intron 40.0%
!!! TATGCTTGGTTTTTGGCTTC+GGG + Chr3:80917999-80918018 None:intergenic 40.0%
!!! TTTTGGTTCGAAACTGCGAT+CGG + Chr3:80916801-80916820 None:intergenic 40.0%
AACGTGGGATTCATCCCATT+AGG - Chr3:80917465-80917484 MsG0380016246.01.T01:intron 45.0%
AACTACTGGGGTTGTTGTGT+TGG - Chr3:80917406-80917425 MsG0380016246.01.T01:intron 45.0%
AGCAACGATATTGGAGCAGA+TGG - Chr3:80917313-80917332 MsG0380016246.01.T01:CDS 45.0%
AGCAGAGATTGCTGTGAAAG+CGG - Chr3:80917780-80917799 MsG0380016246.01.T01:intron 45.0%
ATGATGCATTGTGTGTGGCT+AGG - Chr3:80919194-80919213 MsG0380016246.01.T01:CDS 45.0%
ATGCATACCTGTTCTACACC+AGG + Chr3:80919310-80919329 None:intergenic 45.0%
ATGGCAAACATCACGACATC+AGG + Chr3:80919652-80919671 None:intergenic 45.0%
ATGGCCCTTGCTGAAAATAG+TGG - Chr3:80920514-80920533 MsG0380016246.01.T01:CDS 45.0%
ATGTTGGCACCAATGACATG+AGG - Chr3:80920750-80920769 MsG0380016246.01.T01:CDS 45.0%
ATTCAAGGCTGGCATCGTTA+GGG - Chr3:80918807-80918826 MsG0380016246.01.T01:CDS 45.0%
CAACAGTAGTTCAACTTCCC+AGG + Chr3:80921129-80921148 None:intergenic 45.0%
CAGGACTATGAAATCGGTGA+TGG - Chr3:80917383-80917402 MsG0380016246.01.T01:intron 45.0%
CATCCCATTAGGATTGCTGA+AGG - Chr3:80917476-80917495 MsG0380016246.01.T01:CDS 45.0%
CCTGCCATTACCAAACAACA+AGG + Chr3:80919136-80919155 None:intergenic 45.0%
CGTGACCGTGTAAACCAATA+TGG - Chr3:80916842-80916861 MsG0380016246.01.T01:three_prime_UTR 45.0%
CTTCATCGTCAAAACCCCAT+TGG + Chr3:80918343-80918362 None:intergenic 45.0%
GAACTTGCCAGCTGTTAGAT+GGG - Chr3:80918385-80918404 MsG0380016246.01.T01:intron 45.0%
GCACGTCTTTGTATTGGAGT+TGG - Chr3:80921012-80921031 MsG0380016246.01.T01:CDS 45.0%
TAACCAGATTGCGAAGCTGA+TGG - Chr3:80917343-80917362 MsG0380016246.01.T01:intron 45.0%
TACATTGCAGGATTGTGTGC+TGG - Chr3:80921161-80921180 MsG0380016246.01.T01:CDS 45.0%
TAGATACCCTGGTGTAGAAC+AGG - Chr3:80919300-80919319 MsG0380016246.01.T01:intron 45.0%
TATTCAAGGCTGGCATCGTT+AGG - Chr3:80918806-80918825 MsG0380016246.01.T01:CDS 45.0%
TGACAGTGCCCTACTTAGAT+AGG + Chr3:80918159-80918178 None:intergenic 45.0%
TGCATACCTGTTCTACACCA+GGG + Chr3:80919309-80919328 None:intergenic 45.0%
TGGAGAAGTTTCAGACGTTG+AGG - Chr3:80918037-80918056 MsG0380016246.01.T01:intron 45.0%
TGTTGGCACCAATGACATGA+GGG - Chr3:80920751-80920770 MsG0380016246.01.T01:CDS 45.0%
! AAAACACCGCCATAGGGTTT+TGG - Chr3:80916817-80916836 MsG0380016246.01.T01:three_prime_UTR 45.0%
! AAAACCCTATGGCGGTGTTT+TGG + Chr3:80916818-80916837 None:intergenic 45.0%
! AGTGAGGATTTTTCTCCTGC+AGG + Chr3:80920712-80920731 None:intergenic 45.0%
! CACTGTCACTTGCTCTTTAC+TGG - Chr3:80918171-80918190 MsG0380016246.01.T01:intron 45.0%
! CTATTTTCAGCAAGGGCCAT+AGG + Chr3:80920514-80920533 None:intergenic 45.0%
! GAGGATTGCTGTTGAGAATC+TGG - Chr3:80917514-80917533 MsG0380016246.01.T01:CDS 45.0%
! GGAGACCACTATTTTCAGCA+AGG + Chr3:80920522-80920541 None:intergenic 45.0%
! GTTTTGCTCCCTCATGTCAT+TGG + Chr3:80920762-80920781 None:intergenic 45.0%
! TAGAGCATTTGGGGATGCTT+TGG - Chr3:80920480-80920499 MsG0380016246.01.T01:CDS 45.0%
! TTGCTGTTGCTGATCTAGAG+AGG - Chr3:80917806-80917825 MsG0380016246.01.T01:intron 45.0%
!! AATCGGTGATGGAACTACTG+GGG - Chr3:80917394-80917413 MsG0380016246.01.T01:intron 45.0%
!! AGGAAAGGTTGGTGGGAAAT+TGG - Chr3:80917861-80917880 MsG0380016246.01.T01:intron 45.0%
!! CAGCGCCATATTGGTTTACA+CGG + Chr3:80916850-80916869 None:intergenic 45.0%
!! CCTTGTTGTTTGGTAATGGC+AGG - Chr3:80919133-80919152 MsG0380016246.01.T01:intron 45.0%
!! GAAATCGGTGATGGAACTAC+TGG - Chr3:80917392-80917411 MsG0380016246.01.T01:intron 45.0%
!! GCTGCCTTGTTGTTTGGTAA+TGG - Chr3:80919129-80919148 MsG0380016246.01.T01:intron 45.0%
!! TGCTTTGGAGTCGATTCCTA+TGG - Chr3:80920495-80920514 MsG0380016246.01.T01:CDS 45.0%
!!! ATGCTTGGTTTTTGGCTTCG+GGG + Chr3:80917998-80918017 None:intergenic 45.0%
AAGATGCTTCAAAGCCCCGA+CGG - Chr3:80917023-80917042 MsG0380016246.01.T01:three_prime_UTR 50.0%
AATACGAGCGACGGCTTTAC+CGG + Chr3:80916970-80916989 None:intergenic 50.0%
AGAGGGAATCTGCATGAGTC+AGG - Chr3:80919996-80920015 MsG0380016246.01.T01:CDS 50.0%
ATCCATACCCTTAGGACCGA+GGG + Chr3:80917003-80917022 None:intergenic 50.0%
ATGTCTCCACCTGCCAAAGT+AGG - Chr3:80920243-80920262 MsG0380016246.01.T01:CDS 50.0%
CACGATCCAAAACCCTATGG+CGG + Chr3:80916826-80916845 None:intergenic 50.0%
CAGAAAGCTAACATCTCCGC+CGG - Chr3:80916948-80916967 MsG0380016246.01.T01:three_prime_UTR 50.0%
CGAACCAAAACACCGCCATA+GGG - Chr3:80916811-80916830 MsG0380016246.01.T01:three_prime_UTR 50.0%
CGTGTAAACCAATATGGCGC+TGG - Chr3:80916848-80916867 MsG0380016246.01.T01:three_prime_UTR 50.0%
CTCTTCTTGAGCAAGCTGAG+AGG - Chr3:80917435-80917454 MsG0380016246.01.T01:intron 50.0%
GAATCGAAGAACCGTCTTCG+TGG - Chr3:80916915-80916934 MsG0380016246.01.T01:three_prime_UTR 50.0%
GAGGGAATCTGCATGAGTCA+GGG - Chr3:80919997-80920016 MsG0380016246.01.T01:CDS 50.0%
GATTGCATGCTCTATTGCCG+TGG - Chr3:80919264-80919283 MsG0380016246.01.T01:intron 50.0%
GCAGTTAACTCCTGGAACCT+AGG + Chr3:80918597-80918616 None:intergenic 50.0%
GGAACTTGCCAGCTGTTAGA+TGG - Chr3:80918384-80918403 MsG0380016246.01.T01:intron 50.0%
GGCAGGTGGAGACATTTCTT+TGG + Chr3:80920238-80920257 None:intergenic 50.0%
GGTCACGATCCAAAACCCTA+TGG + Chr3:80916829-80916848 None:intergenic 50.0%
TACATGCCTACTTTGGCAGG+TGG + Chr3:80920252-80920271 None:intergenic 50.0%
TATCCATACCCTTAGGACCG+AGG + Chr3:80917004-80917023 None:intergenic 50.0%
TCGAACCAAAACACCGCCAT+AGG - Chr3:80916810-80916829 MsG0380016246.01.T01:three_prime_UTR 50.0%
TTGCCAGCTGTTAGATGGGT+TGG - Chr3:80918389-80918408 MsG0380016246.01.T01:intron 50.0%
! AAGGGTATGAAATGGCGTCG+AGG - Chr3:80917495-80917514 MsG0380016246.01.T01:CDS 50.0%
! ACAGATGATGACGTCACCGT+CGG + Chr3:80917042-80917061 None:intergenic 50.0%
! TGAGCAAGCTGAGAGGCTTT+TGG - Chr3:80917442-80917461 MsG0380016246.01.T01:intron 50.0%
!! ATGGGTTGGTGGTGTTGAGT+TGG - Chr3:80918403-80918422 MsG0380016246.01.T01:intron 50.0%
!!! CTGAGAGGCTTTTGGAACGT+GGG - Chr3:80917450-80917469 MsG0380016246.01.T01:intron 50.0%
!!! TGCTTGGTTTTTGGCTTCGG+GGG + Chr3:80917997-80918016 None:intergenic 50.0%
CCACCAACCCATCTAACAGC+TGG + Chr3:80918395-80918414 None:intergenic 55.0%
CCACCATCAGCTTCGCAATC+TGG + Chr3:80917349-80917368 None:intergenic 55.0%
CCAGATTGCGAAGCTGATGG+TGG - Chr3:80917346-80917365 MsG0380016246.01.T01:intron 55.0%
CGTATTCTCCGTACCTCCCT+CGG - Chr3:80916984-80917003 MsG0380016246.01.T01:three_prime_UTR 55.0%
GGTACGGAGAATACGAGCGA+CGG + Chr3:80916979-80916998 None:intergenic 55.0%
GTCGAAAGCCAGCGCCATAT+TGG + Chr3:80916859-80916878 None:intergenic 55.0%
TGCATGCTCTATTGCCGTGG+AGG - Chr3:80919267-80919286 MsG0380016246.01.T01:intron 55.0%
TGGCTTTCGACGAGTACGGA+AGG - Chr3:80916868-80916887 MsG0380016246.01.T01:three_prime_UTR 55.0%
TTGGCTTCGGGGGCTCAAAT+GGG + Chr3:80917987-80918006 None:intergenic 55.0%
! ACTGGGGTTGTTGTGTTGGC+TGG - Chr3:80917410-80917429 MsG0380016246.01.T01:intron 55.0%
! AGATGATGACGTCACCGTCG+GGG + Chr3:80917040-80917059 None:intergenic 55.0%
! CAGATGATGACGTCACCGTC+GGG + Chr3:80917041-80917060 None:intergenic 55.0%
! TTTGGCTTCGGGGGCTCAAA+TGG + Chr3:80917988-80918007 None:intergenic 55.0%
!! AGCTGATGGTGGAGTTGTCG+AGG - Chr3:80917357-80917376 MsG0380016246.01.T01:intron 55.0%
!! CCAGCTGTTAGATGGGTTGG+TGG - Chr3:80918392-80918411 MsG0380016246.01.T01:intron 55.0%
!! GAGCATCGAGACCACGAAGA+CGG + Chr3:80916929-80916948 None:intergenic 55.0%
!!! GCTGAGAGGCTTTTGGAACG+TGG - Chr3:80917449-80917468 MsG0380016246.01.T01:intron 55.0%
CATACCCTTAGGACCGAGGG+AGG + Chr3:80917000-80917019 None:intergenic 60.0%
CCTTAGGACCGAGGGAGGTA+CGG + Chr3:80916995-80917014 None:intergenic 60.0%
CGTACCTCCCTCGGTCCTAA+GGG - Chr3:80916993-80917012 MsG0380016246.01.T01:three_prime_UTR 60.0%
CTCCCTCGGTCCTAAGGGTA+TGG - Chr3:80916998-80917017 MsG0380016246.01.T01:three_prime_UTR 60.0%
GCAGCTGCGGATAGATACCC+TGG - Chr3:80919289-80919308 MsG0380016246.01.T01:intron 60.0%
GGTGGAGTTGTCGAGGAGTC+AGG - Chr3:80917364-80917383 MsG0380016246.01.T01:intron 60.0%
TATTGCCGTGGAGGCAGCTG+CGG - Chr3:80919276-80919295 MsG0380016246.01.T01:intron 60.0%
TCTATCCGCAGCTGCCTCCA+CGG + Chr3:80919284-80919303 None:intergenic 60.0%
!! GCGCTGGCTTTCGACGAGTA+CGG - Chr3:80916864-80916883 MsG0380016246.01.T01:three_prime_UTR 60.0%
ACGAGCGACGGCTTTACCGG+CGG + Chr3:80916967-80916986 None:intergenic 65.0%
CCGTACCTCCCTCGGTCCTA+AGG - Chr3:80916992-80917011 MsG0380016246.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80916707 80921349 80916707 ID=MsG0380016246.01;Name=MsG0380016246.01
Chr3 mRNA 80916707 80921349 80916707 ID=MsG0380016246.01.T01;Parent=MsG0380016246.01;Name=MsG0380016246.01.T01;_AED=0.26;_eAED=0.27;_QI=154|0.87|0.88|1|0.87|0.77|9|463|550
Chr3 exon 80916707 80917340 80916707 ID=MsG0380016246.01.T01:exon:10576;Parent=MsG0380016246.01.T01
Chr3 exon 80917471 80917584 80917471 ID=MsG0380016246.01.T01:exon:10575;Parent=MsG0380016246.01.T01
Chr3 exon 80918735 80918901 80918735 ID=MsG0380016246.01.T01:exon:10574;Parent=MsG0380016246.01.T01
Chr3 exon 80919140 80919242 80919140 ID=MsG0380016246.01.T01:exon:10573;Parent=MsG0380016246.01.T01
Chr3 exon 80919424 80919476 80919424 ID=MsG0380016246.01.T01:exon:10572;Parent=MsG0380016246.01.T01
Chr3 exon 80919610 80919742 80919610 ID=MsG0380016246.01.T01:exon:10571;Parent=MsG0380016246.01.T01
Chr3 exon 80919952 80920300 80919952 ID=MsG0380016246.01.T01:exon:10570;Parent=MsG0380016246.01.T01
Chr3 exon 80920435 80920798 80920435 ID=MsG0380016246.01.T01:exon:10569;Parent=MsG0380016246.01.T01
Chr3 exon 80920997 80921349 80920997 ID=MsG0380016246.01.T01:exon:10568;Parent=MsG0380016246.01.T01
Chr3 five_prime_UTR 80921196 80921349 80921196 ID=MsG0380016246.01.T01:five_prime_utr;Parent=MsG0380016246.01.T01
Chr3 CDS 80920997 80921195 80920997 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80920435 80920798 80920435 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80919952 80920300 80919952 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80919610 80919742 80919610 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80919424 80919476 80919424 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80919140 80919242 80919140 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80918735 80918901 80918735 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80917471 80917584 80917471 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 CDS 80917170 80917340 80917170 ID=MsG0380016246.01.T01:cds;Parent=MsG0380016246.01.T01
Chr3 three_prime_UTR 80916707 80917169 80916707 ID=MsG0380016246.01.T01:three_prime_utr;Parent=MsG0380016246.01.T01
Gene Sequence

>MsG0380016246.01.T01

ATGGCGCTGGCTTTCGACGAGTACGGAAGGCCGTTCATTATCCTCAGAGAACAAGAATCGAAGAACCGTCTTCGTGGTCTCGATGCTCAGAAAGCTAACATCTCCGCCGGTAAAGCCGTCGCTCGTATTCTCCGTACCTCCCTCGGTCCTAAGGGTATGGATAAGATGCTTCAAAGCCCCGACGGTGACGTCATCATCTTGTTAACGGCACTTTATAGTAACATTTTTGTGTGTTTGTTTGAAGCAAATGATGGAGCAACGATATTGGAGCAGATGGATGTAGATAACCAGATTGCGAAGCTGATGGTGGAGTTGTCGAGGAGTCAGGACTATGAAATCGGTGATGGAACTACTGGGGTTGTTGTGTTGGCTGGATCTCTTCTTGAGCAAGCTGAGAGGCTTTTGGAACGTGGGATTCATCCCATTAGGATTGCTGAAGGGTATGAAATGGCGTCGAGGATTGCTGTTGAGAATCTGGAGAAGATTGCTAATAAGTTTGAGTTTGGTGAAACTATTTTGGAGCCGTTGATTCAGACCTGTATGACTACTTTGTCATCCAAAATTGTGAATCGGTGTAAGCGTAGCTTAGCAGAGATTGCTGTGAAAGCGGTTCTTGCTGTTGCTGATCTAGAGAGGAAAGATGTTAATTTGGATCTGATTAAAGTAGAAGGAAAGGTTGGTGGGAAATTGGAAGATACTGAGTTGGTATATGGAATCATTGTTGACAAGGATATGAGCCATCCTCAAATGCCAAAGCAAATTGAAGATGCTAAAATTGCTATTCTTACTTGCCCATTTGAGCCCCCGAAGCCAAAAACCAAGCATAAGGTTGATATTGATACAGTGGAGAAGTTTCAGACGTTGAGGAAACAAGAACAGAAATATTTTGATGACATGGTTCAACAATGCAAGGATGTAGGTGCAACCCTTGTTATTTGCCAATGGGGTTTTGACGATGAAGCAAATCATCTCTTGATGCACAGGAACTTGCCAGCTGTTAGATGGGTTGGTGGTGTTGAGTTGGAATTGATTGCCATAGCAACAGGTGGAAGAATTGTTCCTAGGTTCCAGGAGTTAACTGCAGAAAAGTTGGGAAAGGCTGGCATCGTTAGGGAAAAAGCATTTGGAACAACTAAAGACCGAATGCTGTACATTGAGCATTGTGCAAACTCAAGGGCTGTAACAATATTCATTCGTGGAGGTAACAAAATGATCATTGAGGAGACAAAGCGCAGTATTCATGATGCATTGTGTGTGGCTAGGAATCTTATTCGCAATAATTCAATTGTGTATGGTGGTGGTTCAGCTGAGATTGCATGCTCTATTGCCGTGGAGGCAGCTGCGGATAGATACCCTGGTGTAGAACAGTATGCAATTAGAGCATTTGGGGATGCTTTGGAGTCGATTCCTATGGCCCTTGCTGAAAATAGTGGTCTCCAACCAATTGAAACATTATCTTCTGTGAAGTCTCAGCAAATAACGGAGAAAAATCCTCACTTTGGCATTGATTGCAATGATGTTGGCACCAATGACATGAGGGAGCAAAACGTCTTTGAGACTTTGATCGGAAAGCAGCAACAGATATTGCTTGCTACTCAAGTTGTCAAGATGATATTAAAAATTGATGATGTTATTTCCCCATCTGAGTACTAA
Protein sequence

>MsG0380016246.01.T01

MALAFDEYGRPFIILREQESKNRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVIILLTALYSNIFVCLFEANDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVLAGSLLEQAERLLERGIHPIRIAEGYEMASRIAVENLEKIANKFEFGETILEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRKQEQKYFDDMVQQCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGIVREKAFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSIHDALCVARNLIRNNSIVYGGGSAEIACSIAVEAAADRYPGVEQYAIRAFGDALESIPMALAENSGLQPIETLSSVKSQQITEKNPHFGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY*