Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047484.01.T01 | XP_024637086.1 | 95.584 | 317 | 6 | 2 | 1 | 310 | 1 | 316 | 0 | 628 |
| MsG0880047484.01.T02 | XP_024637086.1 | 95.425 | 306 | 6 | 2 | 1 | 299 | 12 | 316 | 0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047484.01.T01 | G7JVH5 | 95.584 | 317 | 6 | 2 | 1 | 310 | 1 | 316 | 0.0 | 628 |
| MsG0880047484.01.T02 | G7JVH5 | 95.425 | 306 | 6 | 2 | 1 | 299 | 12 | 316 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880047484.01 | MsG0880047490.01 | 0.828656 | 7.964150e-55 | 7.966395e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047484.01.T01 | MTR_4g128310 | 95.584 | 317 | 6 | 2 | 1 | 310 | 1 | 316 | 0.0 | 628 |
| MsG0880047484.01.T02 | MTR_4g128310 | 95.425 | 306 | 6 | 2 | 1 | 299 | 12 | 316 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047484.01.T01 | AT5G57500 | 67.722 | 316 | 91 | 4 | 3 | 309 | 4 | 317 | 2.64e-153 | 432 |
| MsG0880047484.01.T02 | AT5G57500 | 70.370 | 297 | 77 | 4 | 11 | 298 | 23 | 317 | 1.68e-153 | 432 |
Find 64 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGACATGTAATGTTTAAA+AGG | 0.205102 | 8:-86992503 | None:intergenic |
| GCTTCCATAAATCTAAAATT+TGG | 0.230071 | 8:+86991981 | MsG0880047484.01.T01:CDS |
| GGACCCTCCACGTGTTTCTT+TGG | 0.278399 | 8:-86992581 | None:intergenic |
| TAAATAGGTTTAATGCAAAA+TGG | 0.292393 | 8:+86992651 | MsG0880047484.01.T01:CDS |
| CCGAAGGAGGATTTATACTA+TGG | 0.340654 | 8:+86992452 | MsG0880047484.01.T01:CDS |
| CATTTCCTCCGTCTAGTATA+CGG | 0.365908 | 8:+86992134 | MsG0880047484.01.T01:CDS |
| TCACCAAACACCTTATCTTC+TGG | 0.390933 | 8:-86992602 | None:intergenic |
| ACTGTTTCGTTGAAAATCTC+TGG | 0.393515 | 8:-86992332 | None:intergenic |
| GATATTGTTGAGTGGATTCA+TGG | 0.394735 | 8:+86992548 | MsG0880047484.01.T01:CDS |
| TCATGACTACAAACAGAAAC+TGG | 0.402005 | 8:-86992695 | None:intergenic |
| GTTTGGTGATTGGATGAGAT+GGG | 0.402196 | 8:+86992616 | MsG0880047484.01.T01:CDS |
| ATTCCTTCAAAGGACCAGTA+TGG | 0.406618 | 8:-86992793 | None:intergenic |
| AAGATAAGGTGTTTGGTGAT+TGG | 0.421030 | 8:+86992606 | MsG0880047484.01.T01:CDS |
| TAGTGGTATGGAGGGTAATC+TGG | 0.421093 | 8:-86992362 | None:intergenic |
| GGAAATGTCGTCGTAGGTAT+TGG | 0.424035 | 8:-86992118 | None:intergenic |
| TAACCATACTGGTCCTTTGA+AGG | 0.433399 | 8:+86992790 | MsG0880047484.01.T01:CDS |
| GGGGTCGTAGAGGATTAAAT+AGG | 0.437529 | 8:+86992636 | MsG0880047484.01.T01:CDS |
| CTACGTGAGGTTAAACAGTT+TGG | 0.440226 | 8:+86992409 | MsG0880047484.01.T01:CDS |
| TTGTTCGTTTGTTGAAATTG+AGG | 0.462976 | 8:-86992042 | None:intergenic |
| AAACATTACATGTCAGGGAT+GGG | 0.467261 | 8:+86992509 | MsG0880047484.01.T01:CDS |
| GGTCCAGAAGATAAGGTGTT+TGG | 0.479428 | 8:+86992599 | MsG0880047484.01.T01:CDS |
| CTGACATGTAATGTTTAAAA+GGG | 0.485872 | 8:-86992502 | None:intergenic |
| TGTCGTCGTAGGTATTGGTC+GGG | 0.487255 | 8:-86992113 | None:intergenic |
| CCATAGTATAAATCCTCCTT+CGG | 0.492356 | 8:-86992452 | None:intergenic |
| CGTGGAGGGTCCAGAAGATA+AGG | 0.500488 | 8:+86992592 | MsG0880047484.01.T01:CDS |
| TGTTTGGTGATTGGATGAGA+TGG | 0.507770 | 8:+86992615 | MsG0880047484.01.T01:CDS |
| TAAACATTACATGTCAGGGA+TGG | 0.509130 | 8:+86992508 | MsG0880047484.01.T01:CDS |
| AACATTACATGTCAGGGATG+GGG | 0.512875 | 8:+86992510 | MsG0880047484.01.T01:CDS |
| TGTTGAAGAATCAAGAGAAG+TGG | 0.520516 | 8:+86992747 | MsG0880047484.01.T01:CDS |
| GTTAAAACCGTTACCGAAGG+AGG | 0.529382 | 8:+86992439 | MsG0880047484.01.T01:CDS |
| GCTTTCATAACGTAGTGGTA+TGG | 0.537061 | 8:-86992374 | None:intergenic |
| CTACAAACAGAAACTGGATC+AGG | 0.538009 | 8:-86992689 | None:intergenic |
| CTAAGCTATATGATACATGT+TGG | 0.547955 | 8:-86992816 | None:intergenic |
| TATAAATCCTCCTTCGGTAA+CGG | 0.548830 | 8:-86992446 | None:intergenic |
| TGTGATACCGTGTGGAAGCA+TGG | 0.553514 | 8:+86992478 | MsG0880047484.01.T01:CDS |
| TACATGTTGGATTCCTTCAA+AGG | 0.556547 | 8:-86992803 | None:intergenic |
| TTCATAACGTAGTGGTATGG+AGG | 0.568786 | 8:-86992371 | None:intergenic |
| ATGTCGTCGTAGGTATTGGT+CGG | 0.574850 | 8:-86992114 | None:intergenic |
| TTCGTTTGTTGAAATTGAGG+TGG | 0.579470 | 8:-86992039 | None:intergenic |
| TTTGGTGATTGGATGAGATG+GGG | 0.586718 | 8:+86992617 | MsG0880047484.01.T01:CDS |
| TGGATGAGATGGGGTCGTAG+AGG | 0.587450 | 8:+86992626 | MsG0880047484.01.T01:CDS |
| TAATATGCAGAGGAAGAAGA+TGG | 0.589646 | 8:-86991958 | None:intergenic |
| ATCGTTAAAACCGTTACCGA+AGG | 0.597958 | 8:+86992436 | MsG0880047484.01.T01:CDS |
| CAAGAGATTCGAATCCTCAT+CGG | 0.604375 | 8:+86992077 | MsG0880047484.01.T01:CDS |
| TGGATCAGGATAATTATACA+TGG | 0.630360 | 8:-86992675 | None:intergenic |
| GTCGTCGTAGGTATTGGTCG+GGG | 0.638088 | 8:-86992112 | None:intergenic |
| TCATAACGTAGTGGTATGGA+GGG | 0.642383 | 8:-86992370 | None:intergenic |
| AAAGGGTCCATGCTTCCACA+CGG | 0.645296 | 8:-86992485 | None:intergenic |
| TAAGTTGGGATATTGTTGAG+TGG | 0.646567 | 8:+86992540 | MsG0880047484.01.T01:CDS |
| TGCACGGAAAACATGAACAA+AGG | 0.648841 | 8:+86992281 | MsG0880047484.01.T01:CDS |
| TTTGTGTACCGTATACTAGA+CGG | 0.650769 | 8:-86992142 | None:intergenic |
| CATCATAATTCTCAACTGCA+CGG | 0.654565 | 8:+86992265 | MsG0880047484.01.T01:CDS |
| GACGGAGGAAATGTCGTCGT+AGG | 0.669841 | 8:-86992124 | None:intergenic |
| TACGGTACACAAAACCCTGA+AGG | 0.670631 | 8:+86992152 | MsG0880047484.01.T01:CDS |
| ATACCAAAGAAACACGTGGA+GGG | 0.671115 | 8:+86992578 | MsG0880047484.01.T01:CDS |
| CATCTGCTTTCATAACGTAG+TGG | 0.672252 | 8:-86992379 | None:intergenic |
| TTATGGAAGCTAATATGCAG+AGG | 0.674957 | 8:-86991968 | None:intergenic |
| GCTTGTGAATGATACTATTG+CGG | 0.687103 | 8:+86992718 | MsG0880047484.01.T01:CDS |
| TGATATACCAAAGAAACACG+TGG | 0.712302 | 8:+86992574 | MsG0880047484.01.T01:CDS |
| CAGATGATGATACCTACGTG+AGG | 0.721080 | 8:+86992396 | MsG0880047484.01.T01:CDS |
| GTGTACCGTATACTAGACGG+AGG | 0.721667 | 8:-86992139 | None:intergenic |
| GGAGTGTGAGAACTCCGATG+AGG | 0.728142 | 8:-86992091 | None:intergenic |
| CAAACTGTTTAACCTCACGT+AGG | 0.729711 | 8:-86992408 | None:intergenic |
| TATACCAAAGAAACACGTGG+AGG | 0.751966 | 8:+86992577 | MsG0880047484.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAGGTTTAATGCAAAA+TGG | + | Chr8:86992651-86992670 | MsG0880047484.01.T01:CDS | 20.0% |
| !!! | CTTAATTTTTTTAACCATAC+TGG | + | Chr8:86992779-86992798 | MsG0880047484.01.T01:CDS | 20.0% |
| ! | CTGACATGTAATGTTTAAAA+GGG | - | Chr8:86992505-86992524 | None:intergenic | 25.0% |
| !! | CTTTTAAACATTACATGTCA+GGG | + | Chr8:86992504-86992523 | MsG0880047484.01.T01:CDS | 25.0% |
| !! | GCTTCCATAAATCTAAAATT+TGG | + | Chr8:86991981-86992000 | MsG0880047484.01.T01:CDS | 25.0% |
| !! | TCGACCAAATTTTAGATTTA+TGG | - | Chr8:86991988-86992007 | None:intergenic | 25.0% |
| CCTGACATGTAATGTTTAAA+AGG | - | Chr8:86992506-86992525 | None:intergenic | 30.0% | |
| CTAAGCTATATGATACATGT+TGG | - | Chr8:86992819-86992838 | None:intergenic | 30.0% | |
| TGGATCAGGATAATTATACA+TGG | - | Chr8:86992678-86992697 | None:intergenic | 30.0% | |
| ! | ATTTTCAACGAAACAGTGAA+TGG | + | Chr8:86992338-86992357 | MsG0880047484.01.T01:CDS | 30.0% |
| ! | CCTTTTAAACATTACATGTC+AGG | + | Chr8:86992503-86992522 | MsG0880047484.01.T01:CDS | 30.0% |
| ! | TTGTTCGTTTGTTGAAATTG+AGG | - | Chr8:86992045-86992064 | None:intergenic | 30.0% |
| !! | ATAAGAGCATGAAACGTTTT+CGG | - | Chr8:86991929-86991948 | None:intergenic | 30.0% |
| AAACATTACATGTCAGGGAT+GGG | + | Chr8:86992509-86992528 | MsG0880047484.01.T01:CDS | 35.0% | |
| ACTGTTTCGTTGAAAATCTC+TGG | - | Chr8:86992335-86992354 | None:intergenic | 35.0% | |
| CATCATAATTCTCAACTGCA+CGG | + | Chr8:86992265-86992284 | MsG0880047484.01.T01:CDS | 35.0% | |
| CCATAGTATAAATCCTCCTT+CGG | - | Chr8:86992455-86992474 | None:intergenic | 35.0% | |
| GCTTGTGAATGATACTATTG+CGG | + | Chr8:86992718-86992737 | MsG0880047484.01.T01:CDS | 35.0% | |
| TAAACATTACATGTCAGGGA+TGG | + | Chr8:86992508-86992527 | MsG0880047484.01.T01:CDS | 35.0% | |
| TAATATGCAGAGGAAGAAGA+TGG | - | Chr8:86991961-86991980 | None:intergenic | 35.0% | |
| TACATGTTGGATTCCTTCAA+AGG | - | Chr8:86992806-86992825 | None:intergenic | 35.0% | |
| TATAAATCCTCCTTCGGTAA+CGG | - | Chr8:86992449-86992468 | None:intergenic | 35.0% | |
| TCATGACTACAAACAGAAAC+TGG | - | Chr8:86992698-86992717 | None:intergenic | 35.0% | |
| TGATATACCAAAGAAACACG+TGG | + | Chr8:86992574-86992593 | MsG0880047484.01.T01:CDS | 35.0% | |
| TGTTGAAGAATCAAGAGAAG+TGG | + | Chr8:86992747-86992766 | MsG0880047484.01.T01:CDS | 35.0% | |
| TTATGGAAGCTAATATGCAG+AGG | - | Chr8:86991971-86991990 | None:intergenic | 35.0% | |
| TTTGTGTACCGTATACTAGA+CGG | - | Chr8:86992145-86992164 | None:intergenic | 35.0% | |
| ! | AAGATAAGGTGTTTGGTGAT+TGG | + | Chr8:86992606-86992625 | MsG0880047484.01.T01:CDS | 35.0% |
| ! | GATATTGTTGAGTGGATTCA+TGG | + | Chr8:86992548-86992567 | MsG0880047484.01.T01:CDS | 35.0% |
| ! | TAAGTTGGGATATTGTTGAG+TGG | + | Chr8:86992540-86992559 | MsG0880047484.01.T01:CDS | 35.0% |
| ! | TTCGTTTGTTGAAATTGAGG+TGG | - | Chr8:86992042-86992061 | None:intergenic | 35.0% |
| !!! | AAACGTTTTCGGTTTGGTTT+TGG | - | Chr8:86991918-86991937 | None:intergenic | 35.0% |
| !!! | AACGTTTTCGGTTTGGTTTT+GGG | - | Chr8:86991917-86991936 | None:intergenic | 35.0% |
| AACATTACATGTCAGGGATG+GGG | + | Chr8:86992510-86992529 | MsG0880047484.01.T01:CDS | 40.0% | |
| ATACCAAAGAAACACGTGGA+GGG | + | Chr8:86992578-86992597 | MsG0880047484.01.T01:CDS | 40.0% | |
| ATCGTTAAAACCGTTACCGA+AGG | + | Chr8:86992436-86992455 | MsG0880047484.01.T01:CDS | 40.0% | |
| ATTCCTTCAAAGGACCAGTA+TGG | - | Chr8:86992796-86992815 | None:intergenic | 40.0% | |
| CAAACTGTTTAACCTCACGT+AGG | - | Chr8:86992411-86992430 | None:intergenic | 40.0% | |
| CAAGAGATTCGAATCCTCAT+CGG | + | Chr8:86992077-86992096 | MsG0880047484.01.T01:CDS | 40.0% | |
| CATCTGCTTTCATAACGTAG+TGG | - | Chr8:86992382-86992401 | None:intergenic | 40.0% | |
| CATTTCCTCCGTCTAGTATA+CGG | + | Chr8:86992134-86992153 | MsG0880047484.01.T01:CDS | 40.0% | |
| CCGAAGGAGGATTTATACTA+TGG | + | Chr8:86992452-86992471 | MsG0880047484.01.T01:CDS | 40.0% | |
| CTACAAACAGAAACTGGATC+AGG | - | Chr8:86992692-86992711 | None:intergenic | 40.0% | |
| CTACGTGAGGTTAAACAGTT+TGG | + | Chr8:86992409-86992428 | MsG0880047484.01.T01:CDS | 40.0% | |
| GCTTTCATAACGTAGTGGTA+TGG | - | Chr8:86992377-86992396 | None:intergenic | 40.0% | |
| TAACCATACTGGTCCTTTGA+AGG | + | Chr8:86992790-86992809 | MsG0880047484.01.T01:CDS | 40.0% | |
| TATACCAAAGAAACACGTGG+AGG | + | Chr8:86992577-86992596 | MsG0880047484.01.T01:CDS | 40.0% | |
| TCACCAAACACCTTATCTTC+TGG | - | Chr8:86992605-86992624 | None:intergenic | 40.0% | |
| TCATAACGTAGTGGTATGGA+GGG | - | Chr8:86992373-86992392 | None:intergenic | 40.0% | |
| TGCACGGAAAACATGAACAA+AGG | + | Chr8:86992281-86992300 | MsG0880047484.01.T01:CDS | 40.0% | |
| TTCATAACGTAGTGGTATGG+AGG | - | Chr8:86992374-86992393 | None:intergenic | 40.0% | |
| ! | AGCATGAAACGTTTTCGGTT+TGG | - | Chr8:86991924-86991943 | None:intergenic | 40.0% |
| ! | GTTTGGTGATTGGATGAGAT+GGG | + | Chr8:86992616-86992635 | MsG0880047484.01.T01:CDS | 40.0% |
| ! | TGTTTGGTGATTGGATGAGA+TGG | + | Chr8:86992615-86992634 | MsG0880047484.01.T01:CDS | 40.0% |
| ! | TTTGGTGATTGGATGAGATG+GGG | + | Chr8:86992617-86992636 | MsG0880047484.01.T01:CDS | 40.0% |
| !!! | ACGTTTTCGGTTTGGTTTTG+GGG | - | Chr8:86991916-86991935 | None:intergenic | 40.0% |
| !!! | GATGGGGTTTTTGGTAAGTT+GGG | + | Chr8:86992526-86992545 | MsG0880047484.01.T01:CDS | 40.0% |
| !!! | TATGGTTTTGTGATACCGTG+TGG | + | Chr8:86992470-86992489 | MsG0880047484.01.T01:CDS | 40.0% |
| CAGATGATGATACCTACGTG+AGG | + | Chr8:86992396-86992415 | MsG0880047484.01.T01:CDS | 45.0% | |
| GGAAATGTCGTCGTAGGTAT+TGG | - | Chr8:86992121-86992140 | None:intergenic | 45.0% | |
| GGGGTCGTAGAGGATTAAAT+AGG | + | Chr8:86992636-86992655 | MsG0880047484.01.T01:CDS | 45.0% | |
| GTTAAAACCGTTACCGAAGG+AGG | + | Chr8:86992439-86992458 | MsG0880047484.01.T01:CDS | 45.0% | |
| TACGGTACACAAAACCCTGA+AGG | + | Chr8:86992152-86992171 | MsG0880047484.01.T01:CDS | 45.0% | |
| TAGTGGTATGGAGGGTAATC+TGG | - | Chr8:86992365-86992384 | None:intergenic | 45.0% | |
| ! | GGTCCAGAAGATAAGGTGTT+TGG | + | Chr8:86992599-86992618 | MsG0880047484.01.T01:CDS | 45.0% |
| !! | ATGTCGTCGTAGGTATTGGT+CGG | - | Chr8:86992117-86992136 | None:intergenic | 45.0% |
| !!! | ACGTCGATTTTTGCACCTTC+AGG | - | Chr8:86992170-86992189 | None:intergenic | 45.0% |
| !!! | CGTCGATTTTTGCACCTTCA+GGG | - | Chr8:86992169-86992188 | None:intergenic | 45.0% |
| !!! | GGATGGGGTTTTTGGTAAGT+TGG | + | Chr8:86992525-86992544 | MsG0880047484.01.T01:CDS | 45.0% |
| AAAGGGTCCATGCTTCCACA+CGG | - | Chr8:86992488-86992507 | None:intergenic | 50.0% | |
| GTGTACCGTATACTAGACGG+AGG | - | Chr8:86992142-86992161 | None:intergenic | 50.0% | |
| TGTGATACCGTGTGGAAGCA+TGG | + | Chr8:86992478-86992497 | MsG0880047484.01.T01:CDS | 50.0% | |
| ! | CATGTCAGGGATGGGGTTTT+TGG | + | Chr8:86992517-86992536 | MsG0880047484.01.T01:CDS | 50.0% |
| !! | TGTCGTCGTAGGTATTGGTC+GGG | - | Chr8:86992116-86992135 | None:intergenic | 50.0% |
| CGTGGAGGGTCCAGAAGATA+AGG | + | Chr8:86992592-86992611 | MsG0880047484.01.T01:CDS | 55.0% | |
| GACGGAGGAAATGTCGTCGT+AGG | - | Chr8:86992127-86992146 | None:intergenic | 55.0% | |
| GGACCCTCCACGTGTTTCTT+TGG | - | Chr8:86992584-86992603 | None:intergenic | 55.0% | |
| GGAGTGTGAGAACTCCGATG+AGG | - | Chr8:86992094-86992113 | None:intergenic | 55.0% | |
| TGGATGAGATGGGGTCGTAG+AGG | + | Chr8:86992626-86992645 | MsG0880047484.01.T01:CDS | 55.0% | |
| !! | GTCGTCGTAGGTATTGGTCG+GGG | - | Chr8:86992115-86992134 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 86991906 | 86992838 | 86991906 | ID=MsG0880047484.01;Name=MsG0880047484.01 |
| Chr8 | mRNA | 86991906 | 86992838 | 86991906 | ID=MsG0880047484.01.T01;Parent=MsG0880047484.01;Name=MsG0880047484.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|310 |
| Chr8 | exon | 86991906 | 86992838 | 86991906 | ID=MsG0880047484.01.T01:exon:18524;Parent=MsG0880047484.01.T01 |
| Chr8 | CDS | 86991906 | 86992838 | 86991906 | ID=MsG0880047484.01.T01:cds;Parent=MsG0880047484.01.T01 |
| Chr8 | mRNA | 86991939 | 86992838 | 86991939 | ID=MsG0880047484.01.T02;Parent=MsG0880047484.01;Name=MsG0880047484.01.T02;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|299 |
| Chr8 | exon | 86991939 | 86992838 | 86991939 | ID=MsG0880047484.01.T02:exon:18525;Parent=MsG0880047484.01.T02 |
| Chr8 | CDS | 86991939 | 86992838 | 86991939 | ID=MsG0880047484.01.T02:cds;Parent=MsG0880047484.01.T02 |
| Gene Sequence |
| Protein sequence |