Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000750 | sp|Q7XJK8|PHE2_ARATH | 28.807 | 243 | 145 | 6 | 6 | 232 | 2 | 232 | 1.66e-19 | 92.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0000750 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000750 | Msa1380290 | 0.818650 | 1.754724e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000750 | MtrunA17_Chr4g0008701 | 77.281 | 559 | 62 | 5 | 1 | 534 | 1 | 519 | 0.0 | 773 |
| Msa0000750 | MtrunA17_Chr7g0267601 | 76.029 | 559 | 53 | 7 | 1 | 534 | 1 | 503 | 0.0 | 759 |
| Msa0000750 | MtrunA17_Chr3g0128721 | 45.408 | 588 | 249 | 12 | 1 | 534 | 1 | 570 | 4.08e-139 | 414 |
| Msa0000750 | MtrunA17_Chr8g0361741 | 50.362 | 276 | 128 | 2 | 13 | 283 | 13 | 284 | 5.15e-66 | 216 |
| Msa0000750 | MtrunA17_Chr3g0107381 | 32.121 | 165 | 108 | 2 | 1 | 164 | 1 | 162 | 1.45e-23 | 99.0 |
| Msa0000750 | MtrunA17_Chr5g0432691 | 33.333 | 156 | 102 | 2 | 7 | 161 | 4 | 158 | 1.15e-22 | 94.7 |
| Msa0000750 | MtrunA17_Chr8g0351751 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 2.45e-21 | 93.6 |
| Msa0000750 | MtrunA17_Chr4g0014321 | 35.246 | 122 | 79 | 0 | 6 | 127 | 3 | 124 | 4.19e-21 | 92.4 |
| Msa0000750 | MtrunA17_Chr4g0013041 | 30.256 | 195 | 124 | 4 | 7 | 196 | 4 | 191 | 6.15e-21 | 91.3 |
| Msa0000750 | MtrunA17_Chr3g0107331 | 33.333 | 150 | 99 | 1 | 6 | 154 | 2 | 151 | 7.07e-20 | 86.7 |
| Msa0000750 | MtrunA17_Chr3g0107361 | 32.026 | 153 | 103 | 1 | 6 | 157 | 2 | 154 | 1.76e-19 | 85.5 |
| Msa0000750 | MtrunA17_Chr4g0014031 | 40.909 | 132 | 75 | 1 | 1 | 132 | 1 | 129 | 2.53e-19 | 87.0 |
| Msa0000750 | MtrunA17_Chr2g0283941 | 31.034 | 145 | 99 | 1 | 7 | 150 | 4 | 148 | 2.75e-19 | 87.4 |
| Msa0000750 | MtrunA17_Chr3g0107351 | 30.719 | 153 | 105 | 1 | 6 | 157 | 2 | 154 | 1.21e-18 | 83.2 |
| Msa0000750 | MtrunA17_Chr1g0197321 | 33.043 | 115 | 76 | 1 | 6 | 120 | 3 | 116 | 3.30e-18 | 82.0 |
| Msa0000750 | MtrunA17_Chr3g0110131 | 33.113 | 151 | 100 | 1 | 6 | 155 | 3 | 153 | 8.00e-18 | 83.2 |
| Msa0000750 | MtrunA17_Chr3g0107341 | 30.065 | 153 | 106 | 1 | 6 | 157 | 2 | 154 | 1.55e-17 | 80.1 |
| Msa0000750 | MtrunA17_Chr4g0014121 | 41.053 | 95 | 56 | 0 | 38 | 132 | 63 | 157 | 1.40e-16 | 78.2 |
| Msa0000750 | MtrunA17_Chr5g0420351 | 34.167 | 120 | 75 | 2 | 1 | 120 | 1 | 116 | 1.68e-16 | 77.0 |
| Msa0000750 | MtrunA17_Chr4g0014131 | 31.613 | 155 | 87 | 3 | 38 | 175 | 35 | 187 | 1.70e-16 | 79.0 |
| Msa0000750 | MtrunA17_Chr2g0296831 | 36.800 | 125 | 76 | 1 | 1 | 125 | 1 | 122 | 2.84e-16 | 75.1 |
| Msa0000750 | MtrunA17_Chr1g0197461 | 26.207 | 145 | 106 | 1 | 6 | 150 | 2 | 145 | 1.38e-15 | 74.3 |
| Msa0000750 | MtrunA17_Chr1g0197261 | 32.479 | 117 | 74 | 2 | 1 | 115 | 1 | 114 | 1.27e-14 | 71.6 |
| Msa0000750 | MtrunA17_Chr1g0188681 | 30.328 | 122 | 83 | 2 | 6 | 126 | 3 | 123 | 1.51e-14 | 71.2 |
| Msa0000750 | MtrunA17_Chr1g0188651 | 33.600 | 125 | 78 | 2 | 6 | 126 | 3 | 126 | 6.42e-14 | 69.7 |
| Msa0000750 | MtrunA17_Chr4g0012761 | 35.374 | 147 | 91 | 3 | 6 | 149 | 3 | 148 | 7.39e-14 | 69.3 |
| Msa0000750 | MtrunA17_Chr1g0193311 | 37.097 | 124 | 70 | 3 | 1 | 120 | 1 | 120 | 2.54e-13 | 67.8 |
| Msa0000750 | MtrunA17_Chr1g0188661 | 35.000 | 120 | 74 | 2 | 1 | 120 | 1 | 116 | 2.58e-13 | 67.8 |
| Msa0000750 | MtrunA17_Chr7g0218151 | 32.895 | 152 | 95 | 4 | 1 | 149 | 1 | 148 | 5.32e-13 | 67.0 |
| Msa0000750 | MtrunA17_Chr3g0107461 | 25.397 | 126 | 90 | 2 | 6 | 127 | 3 | 128 | 1.38e-11 | 63.2 |
| Msa0000750 | MtrunA17_Chr4g0031421 | 29.134 | 127 | 82 | 3 | 34 | 155 | 3 | 126 | 5.54e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000750 | AT1G65300.1 | 28.807 | 243 | 145 | 6 | 6 | 232 | 2 | 232 | 1.69e-20 | 92.0 |
| Msa0000750 | AT2G40210.1 | 28.144 | 167 | 117 | 2 | 4 | 170 | 1 | 164 | 8.69e-19 | 88.6 |
| Msa0000750 | AT3G05860.3 | 31.818 | 132 | 86 | 2 | 1 | 131 | 1 | 129 | 8.41e-17 | 80.9 |
| Msa0000750 | AT3G05860.1 | 31.818 | 132 | 86 | 2 | 1 | 131 | 1 | 129 | 9.37e-17 | 80.9 |
| Msa0000750 | AT5G26650.1 | 31.579 | 114 | 78 | 0 | 7 | 120 | 2 | 115 | 2.47e-16 | 81.3 |
| Msa0000750 | AT1G31630.1 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 2.61e-16 | 80.9 |
| Msa0000750 | AT3G05860.2 | 31.818 | 132 | 86 | 2 | 1 | 131 | 1 | 129 | 3.11e-16 | 78.2 |
| Msa0000750 | AT5G27960.1 | 29.630 | 135 | 87 | 1 | 7 | 133 | 2 | 136 | 7.11e-16 | 79.3 |
| Msa0000750 | AT5G06500.1 | 31.293 | 147 | 94 | 3 | 6 | 149 | 3 | 145 | 2.40e-15 | 76.3 |
| Msa0000750 | AT1G31640.1 | 31.304 | 115 | 78 | 1 | 6 | 120 | 2 | 115 | 2.68e-15 | 79.0 |
| Msa0000750 | AT5G48670.1 | 35.897 | 117 | 75 | 0 | 6 | 122 | 3 | 119 | 6.46e-15 | 76.3 |
| Msa0000750 | AT2G28700.1 | 30.769 | 117 | 81 | 0 | 4 | 120 | 1 | 117 | 9.67e-15 | 75.9 |
| Msa0000750 | AT1G65330.1 | 32.743 | 113 | 76 | 0 | 8 | 120 | 4 | 116 | 1.13e-14 | 75.1 |
| Msa0000750 | AT5G26630.1 | 33.146 | 178 | 110 | 5 | 1 | 177 | 1 | 170 | 2.55e-14 | 72.8 |
| Msa0000750 | AT2G15660.1 | 30.597 | 134 | 88 | 4 | 40 | 172 | 30 | 159 | 3.97e-13 | 69.7 |
| Msa0000750 | AT1G22590.2 | 25.688 | 109 | 78 | 1 | 6 | 114 | 3 | 108 | 8.25e-13 | 67.0 |
| Msa0000750 | AT5G27810.1 | 32.184 | 87 | 59 | 0 | 34 | 120 | 3 | 89 | 1.33e-11 | 62.4 |
Find 118 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTAATCAAGCTAATTT+TGG | 0.158650 | 1_1:-2023806 | Msa0000750:CDS |
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 1_1:-2023371 | Msa0000750:CDS |
| AACTTTGGTGGCAATATTAA+TGG | 0.198018 | 1_1:-2023023 | Msa0000750:CDS |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 1_1:-2023593 | Msa0000750:CDS |
| TTGACTCAAACTTGGTTATT+AGG | 0.210241 | 1_1:+2024317 | None:intergenic |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.211371 | 1_1:+2023345 | None:intergenic |
| TTGTCTCATCAAGGAAATTT+TGG | 0.233564 | 1_1:-2023254 | Msa0000750:CDS |
| GATTGTCACATGCTCCATTT+TGG | 0.244676 | 1_1:+2024426 | None:intergenic |
| CCAACAACCCTTGTCAGATT+TGG | 0.245325 | 1_1:-2023930 | Msa0000750:CDS |
| TTTCTTTGTTGATCTTTCTA+AGG | 0.250528 | 1_1:+2024215 | None:intergenic |
| AACGGTGATGGGGTGCATAA+TGG | 0.258877 | 1_1:-2023980 | Msa0000750:CDS |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 1_1:-2024440 | Msa0000750:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.308700 | 1_1:-2024197 | Msa0000750:CDS |
| TTAATAAAATGCCCCAGATT+TGG | 0.322615 | 1_1:+2023677 | None:intergenic |
| ACGGTGATGGGGTGCATAAT+GGG | 0.323141 | 1_1:-2023979 | Msa0000750:CDS |
| AACTTTGTTGACAATAATTA+CGG | 0.325383 | 1_1:-2022975 | Msa0000750:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.339289 | 1_1:-2024391 | Msa0000750:CDS |
| GAAGTTCAAGACAACTTTAG+AGG | 0.340558 | 1_1:-2023137 | Msa0000750:CDS |
| CAACAACCCTTGTCAGATTT+GGG | 0.353572 | 1_1:-2023929 | Msa0000750:CDS |
| CAAGTTTGAGTCAATGTCAT+TGG | 0.377334 | 1_1:-2024308 | Msa0000750:CDS |
| TATCATGGAGATACCAAATC+TGG | 0.379695 | 1_1:-2023690 | Msa0000750:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 1_1:-2024390 | Msa0000750:CDS |
| TTTGAAGGTCAAGTAAACTT+TGG | 0.391480 | 1_1:-2023461 | Msa0000750:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 1_1:-2024363 | Msa0000750:CDS |
| GCAGGAGATGGCCATATTGA+TGG | 0.394229 | 1_1:+2024352 | None:intergenic |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 1_1:-2024196 | Msa0000750:CDS |
| AACAATATGGGTAGCAACAT+TGG | 0.431457 | 1_1:-2023656 | Msa0000750:CDS |
| GATGTCTAGGCATTTAGAAA+AGG | 0.433553 | 1_1:-2024062 | Msa0000750:CDS |
| ATGTCTAGGCATTTAGAAAA+GGG | 0.436802 | 1_1:-2024061 | Msa0000750:CDS |
| CCTCCACTTGCAGATCTTAG+TGG | 0.439117 | 1_1:-2023845 | Msa0000750:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 1_1:-2024385 | Msa0000750:CDS |
| CATAATGGGGTTAACATGTA+TGG | 0.446371 | 1_1:-2023965 | Msa0000750:CDS |
| CAATGACATTGACTCAAACT+TGG | 0.455302 | 1_1:+2024309 | None:intergenic |
| CCAAATCTGACAAGGGTTGT+TGG | 0.456247 | 1_1:+2023930 | None:intergenic |
| TTTCATCAAAACAACTTTGG+TGG | 0.457377 | 1_1:-2023035 | Msa0000750:CDS |
| GGTGGCAATATTAATGGAGA+TGG | 0.459529 | 1_1:-2023017 | Msa0000750:CDS |
| TTACTTTACACAACGGTGAT+GGG | 0.461878 | 1_1:-2023991 | Msa0000750:CDS |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 1_1:-2023572 | Msa0000750:CDS |
| TTGTGTAAAGTAAAAGATAT+TGG | 0.463560 | 1_1:+2024001 | None:intergenic |
| ATACCACCACATACAAATCT+TGG | 0.466401 | 1_1:-2023296 | Msa0000750:CDS |
| ACTTTGTTGACAATAATTAC+GGG | 0.467038 | 1_1:-2022974 | Msa0000750:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 1_1:+2023065 | None:intergenic |
| ATATTAATGGAGATGGGATG+TGG | 0.470498 | 1_1:-2023010 | Msa0000750:CDS |
| TACCACATGCAAATCTGAAT+GGG | 0.471278 | 1_1:-2023514 | Msa0000750:CDS |
| TTTACTTTACACAACGGTGA+TGG | 0.473941 | 1_1:-2023992 | Msa0000750:CDS |
| ACAATATGGGTAGCAACATT+GGG | 0.477464 | 1_1:-2023655 | Msa0000750:CDS |
| CTACCACATGCAAATCTGAA+TGG | 0.479159 | 1_1:-2023515 | Msa0000750:CDS |
| TCAAAACCACCACTAGAATC+AGG | 0.484744 | 1_1:+2023752 | None:intergenic |
| TACGGGAGCAACTTCAACCC+TGG | 0.503874 | 1_1:-2022957 | Msa0000750:CDS |
| GATATTGGTGCCAACGGTGG+AGG | 0.504265 | 1_1:+2024016 | None:intergenic |
| CTTGCAGATCTTAGTGGTGG+TGG | 0.505108 | 1_1:-2023839 | Msa0000750:CDS |
| ATTAGGTCTTCAGCCACTGC+AGG | 0.513329 | 1_1:+2024334 | None:intergenic |
| AACAACCTTGGAAGTAGCAT+GGG | 0.513933 | 1_1:-2023872 | Msa0000750:CDS |
| ATTGGTGCCAACGGTGGAGG+AGG | 0.517191 | 1_1:+2024019 | None:intergenic |
| ATACCACCTCATACAAATCC+TGG | 0.520709 | 1_1:-2023200 | Msa0000750:CDS |
| TGAGAATAAAACTCGAAGAA+AGG | 0.533789 | 1_1:-2024482 | Msa0000750:CDS |
| GACATTACAGGTAGCAACAC+AGG | 0.536241 | 1_1:-2023542 | Msa0000750:CDS |
| GGTGGAGGAGGATTATTAAG+AGG | 0.544411 | 1_1:+2024031 | None:intergenic |
| ATCATGGAGATACCAAATCT+GGG | 0.548418 | 1_1:-2023689 | Msa0000750:CDS |
| GTGGCAATATTAATGGAGAT+GGG | 0.552269 | 1_1:-2023016 | Msa0000750:CDS |
| CCAACACCAGGATTTGTATG+AGG | 0.556800 | 1_1:+2023194 | None:intergenic |
| TCTTCAGCCACTGCAGGAGA+TGG | 0.560210 | 1_1:+2024340 | None:intergenic |
| TGCTATAAGAGAAGATTGAA+AGG | 0.560605 | 1_1:-2024457 | Msa0000750:CDS |
| TTTGATGACAACACAGGTAG+CGG | 0.563188 | 1_1:-2023434 | Msa0000750:CDS |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 1_1:-2023825 | Msa0000750:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 1_1:-2024075 | Msa0000750:CDS |
| TAACAACCTTGGAAGTAGCA+TGG | 0.574908 | 1_1:-2023873 | Msa0000750:CDS |
| CCATCACCTGATTCTAGTGG+TGG | 0.577153 | 1_1:-2023758 | Msa0000750:CDS |
| TACTTTACACAACGGTGATG+GGG | 0.579959 | 1_1:-2023990 | Msa0000750:CDS |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 1_1:-2023602 | Msa0000750:CDS |
| TAATAATCCTCCTCCACCGT+TGG | 0.582273 | 1_1:-2024026 | Msa0000750:CDS |
| AGTGGTTTCAATAACAACCT+TGG | 0.589310 | 1_1:-2023884 | Msa0000750:CDS |
| GTATCCCCATGCTACTTCCA+AGG | 0.589387 | 1_1:+2023867 | None:intergenic |
| CGGTGATGGGGTGCATAATG+GGG | 0.590425 | 1_1:-2023978 | Msa0000750:CDS |
| GTAAAAGATATTGGTGCCAA+CGG | 0.592046 | 1_1:+2024010 | None:intergenic |
| ACAACACAGGTAGCGGCATG+TGG | 0.592125 | 1_1:-2023427 | Msa0000750:CDS |
| GACAATCTTATGTGGTATTG+AGG | 0.594613 | 1_1:-2024410 | Msa0000750:CDS |
| GCTATAAGAGAAGATTGAAA+GGG | 0.594807 | 1_1:-2024456 | Msa0000750:CDS |
| TTTATTCAGAAGGAAATCCA+GGG | 0.595152 | 1_1:+2022940 | None:intergenic |
| TTTCTCGCCCAAATCTGACA+AGG | 0.596335 | 1_1:+2023922 | None:intergenic |
| CCACATACAAATCTTGGTGT+TGG | 0.598589 | 1_1:-2023290 | Msa0000750:CDS |
| ATAATATATGTAGCAACATG+TGG | 0.610672 | 1_1:-2023106 | Msa0000750:CDS |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 1_1:-2023074 | Msa0000750:CDS |
| TTCTCGCCCAAATCTGACAA+GGG | 0.612284 | 1_1:+2023923 | None:intergenic |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 1_1:-2023077 | Msa0000750:CDS |
| AAAGATATTGGTGCCAACGG+TGG | 0.617732 | 1_1:+2024013 | None:intergenic |
| CCTCATACAAATCCTGGTGT+TGG | 0.617961 | 1_1:-2023194 | Msa0000750:CDS |
| AAAGTTGATCAAATGAGCAG+TGG | 0.618596 | 1_1:-2023902 | Msa0000750:CDS |
| TGTCTAGGCATTTAGAAAAG+GGG | 0.623976 | 1_1:-2024060 | Msa0000750:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 1_1:-2023620 | Msa0000750:CDS |
| GTTGATGTGTTGTCTCATCA+AGG | 0.635762 | 1_1:-2023167 | Msa0000750:CDS |
| GTTGATGTGTTGTCTCATCA+AGG | 0.635762 | 1_1:-2023263 | Msa0000750:CDS |
| CCACTTGCAGATCTTAGTGG+TGG | 0.641334 | 1_1:-2023842 | Msa0000750:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 1_1:-2024166 | Msa0000750:CDS |
| TTTGGAGTTGATAACAACAC+AGG | 0.642445 | 1_1:-2023236 | Msa0000750:CDS |
| CCACATTCAAATTCGAGTGG+TGG | 0.643895 | 1_1:-2023401 | Msa0000750:CDS |
| ACACCAAGATTTGTATGTGG+TGG | 0.650459 | 1_1:+2023293 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 1_1:+2023614 | None:intergenic |
| ACATCAACATCACCAACACC+AGG | 0.652418 | 1_1:+2023182 | None:intergenic |
| ATACCATCACCTGATTCTAG+TGG | 0.652667 | 1_1:-2023761 | Msa0000750:CDS |
| AATATGGCCATCTCCTGCAG+TGG | 0.655817 | 1_1:-2024347 | Msa0000750:CDS |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 1_1:+2023590 | None:intergenic |
| CCAACACCAAGATTTGTATG+TGG | 0.658592 | 1_1:+2023290 | None:intergenic |
| ATGTGGTATTGAGGCATGTG+CGG | 0.658684 | 1_1:-2024401 | Msa0000750:CDS |
| CCACCACTAGAATCAGGTGA+TGG | 0.659191 | 1_1:+2023758 | None:intergenic |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 1_1:+2023587 | None:intergenic |
| TTCCCATTCAGATTTGCATG+TGG | 0.661550 | 1_1:+2023512 | None:intergenic |
| CCACCACTCGAATTTGAATG+TGG | 0.662521 | 1_1:+2023401 | None:intergenic |
| GAGCATGTGACAATCTTATG+TGG | 0.668241 | 1_1:-2024418 | Msa0000750:CDS |
| ACACCAGGATTTGTATGAGG+TGG | 0.668736 | 1_1:+2023197 | None:intergenic |
| ACATTACAGGTAGCAACACA+GGG | 0.671623 | 1_1:-2023541 | Msa0000750:CDS |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 1_1:-2023626 | Msa0000750:CDS |
| CCACTAAGATCTGCAAGTGG+AGG | 0.680631 | 1_1:+2023845 | None:intergenic |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 1_1:-2023629 | Msa0000750:CDS |
| TCATGGAGATACCAAATCTG+GGG | 0.689796 | 1_1:-2023688 | Msa0000750:CDS |
| CCACCACTAAGATCTGCAAG+TGG | 0.694900 | 1_1:+2023842 | None:intergenic |
| ACAACCTTGGAAGTAGCATG+GGG | 0.697964 | 1_1:-2023871 | Msa0000750:CDS |
| ATACCACATTCAAATTCGAG+TGG | 0.714863 | 1_1:-2023404 | Msa0000750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTATTCTCAATCAATT+TGG | + | chr1_1:2022975-2022994 | None:intergenic | 20.0% |
| !! | TTGTGTAAAGTAAAAGATAT+TGG | + | chr1_1:2023466-2023485 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTACACAA+CGG | - | chr1_1:2023466-2023485 | Msa0000750:CDS | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | + | chr1_1:2024122-2024141 | None:intergenic | 20.0% |
| !! | AACTTTGTTGACAATAATTA+CGG | - | chr1_1:2024489-2024508 | Msa0000750:CDS | 20.0% |
| !!! | AGTTTTATTCTCAATCAATT+TGG | + | chr1_1:2022975-2022994 | None:intergenic | 20.0% |
| !! | TTGTGTAAAGTAAAAGATAT+TGG | + | chr1_1:2023466-2023485 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTACACAA+CGG | - | chr1_1:2023466-2023485 | Msa0000750:CDS | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | + | chr1_1:2024122-2024141 | None:intergenic | 20.0% |
| !! | AACTTTGTTGACAATAATTA+CGG | - | chr1_1:2024489-2024508 | Msa0000750:CDS | 20.0% |
| ! | TTTCTTTGTTGATCTTTCTA+AGG | + | chr1_1:2023252-2023271 | None:intergenic | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | - | chr1_1:2023267-2023286 | Msa0000750:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | - | chr1_1:2023268-2023287 | Msa0000750:CDS | 25.0% |
| !!! | GGAAAATTTTGATAGTATCA+TGG | - | chr1_1:2023759-2023778 | Msa0000750:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+GGG | - | chr1_1:2023796-2023815 | Msa0000750:CDS | 25.0% |
| ! | ATAATATATGTAGCAACATG+TGG | - | chr1_1:2024358-2024377 | Msa0000750:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTT+TGG | - | chr1_1:2024426-2024445 | Msa0000750:CDS | 25.0% |
| ! | ACTTTGTTGACAATAATTAC+GGG | - | chr1_1:2024490-2024509 | Msa0000750:CDS | 25.0% |
| ! | TTTCTTTGTTGATCTTTCTA+AGG | + | chr1_1:2023252-2023271 | None:intergenic | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | - | chr1_1:2023267-2023286 | Msa0000750:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | - | chr1_1:2023268-2023287 | Msa0000750:CDS | 25.0% |
| !!! | GGAAAATTTTGATAGTATCA+TGG | - | chr1_1:2023759-2023778 | Msa0000750:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+GGG | - | chr1_1:2023796-2023815 | Msa0000750:CDS | 25.0% |
| ! | ATAATATATGTAGCAACATG+TGG | - | chr1_1:2024358-2024377 | Msa0000750:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTT+TGG | - | chr1_1:2024426-2024445 | Msa0000750:CDS | 25.0% |
| ! | ACTTTGTTGACAATAATTAC+GGG | - | chr1_1:2024490-2024509 | Msa0000750:CDS | 25.0% |
| TGAGAATAAAACTCGAAGAA+AGG | - | chr1_1:2022982-2023001 | Msa0000750:CDS | 30.0% | |
| TGCTATAAGAGAAGATTGAA+AGG | - | chr1_1:2023007-2023026 | Msa0000750:CDS | 30.0% | |
| GCTATAAGAGAAGATTGAAA+GGG | - | chr1_1:2023008-2023027 | Msa0000750:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | - | chr1_1:2023101-2023120 | Msa0000750:CDS | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | + | chr1_1:2023150-2023169 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | + | chr1_1:2023207-2023226 | None:intergenic | 30.0% | |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | - | chr1_1:2023207-2023226 | Msa0000750:CDS | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | - | chr1_1:2023208-2023227 | Msa0000750:CDS | 30.0% |
| ATGCATCAAATTGAAAACGA+AGG | - | chr1_1:2023298-2023317 | Msa0000750:CDS | 30.0% | |
| ATGTCTAGGCATTTAGAAAA+GGG | - | chr1_1:2023403-2023422 | Msa0000750:CDS | 30.0% | |
| ! | TTGGCTAATCAAGCTAATTT+TGG | - | chr1_1:2023658-2023677 | Msa0000750:CDS | 30.0% |
| !!! | TGGTGGTTTTGATAATAGAA+TGG | - | chr1_1:2023678-2023697 | Msa0000750:CDS | 30.0% |
| !!! | GGTGGTTTTGATAATAGAAT+GGG | - | chr1_1:2023679-2023698 | Msa0000750:CDS | 30.0% |
| !!! | GTGGTTTTGATAATAGAATG+GGG | - | chr1_1:2023680-2023699 | Msa0000750:CDS | 30.0% |
| !!! | AGCGTTTTTTCAAGACAATT+TGG | - | chr1_1:2023738-2023757 | Msa0000750:CDS | 30.0% |
| TTAATAAAATGCCCCAGATT+TGG | + | chr1_1:2023790-2023809 | None:intergenic | 30.0% | |
| !! | GGGGCATTTTATTAACAATA+TGG | - | chr1_1:2023795-2023814 | Msa0000750:CDS | 30.0% |
| ! | TGACCTTCAAAATTTTCTTG+AGG | + | chr1_1:2023994-2024013 | None:intergenic | 30.0% |
| TTTGAAGGTCAAGTAAACTT+TGG | - | chr1_1:2024003-2024022 | Msa0000750:CDS | 30.0% | |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | - | chr1_1:2024093-2024112 | Msa0000750:CDS | 30.0% |
| !! | GAAGATTTTGATATCAACAC+AGG | - | chr1_1:2024132-2024151 | Msa0000750:CDS | 30.0% |
| ! | TTGTCTCATCAAGGAAATTT+TGG | - | chr1_1:2024210-2024229 | Msa0000750:CDS | 30.0% |
| TTTCATCAAAACAACTTTGG+TGG | - | chr1_1:2024429-2024448 | Msa0000750:CDS | 30.0% | |
| ! | AACTTTGGTGGCAATATTAA+TGG | - | chr1_1:2024441-2024460 | Msa0000750:CDS | 30.0% |
| TGAGAATAAAACTCGAAGAA+AGG | - | chr1_1:2022982-2023001 | Msa0000750:CDS | 30.0% | |
| TGCTATAAGAGAAGATTGAA+AGG | - | chr1_1:2023007-2023026 | Msa0000750:CDS | 30.0% | |
| GCTATAAGAGAAGATTGAAA+GGG | - | chr1_1:2023008-2023027 | Msa0000750:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | - | chr1_1:2023101-2023120 | Msa0000750:CDS | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | + | chr1_1:2023150-2023169 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | + | chr1_1:2023207-2023226 | None:intergenic | 30.0% | |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | - | chr1_1:2023207-2023226 | Msa0000750:CDS | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | - | chr1_1:2023208-2023227 | Msa0000750:CDS | 30.0% |
| ATGCATCAAATTGAAAACGA+AGG | - | chr1_1:2023298-2023317 | Msa0000750:CDS | 30.0% | |
| ATGTCTAGGCATTTAGAAAA+GGG | - | chr1_1:2023403-2023422 | Msa0000750:CDS | 30.0% | |
| ! | TTGGCTAATCAAGCTAATTT+TGG | - | chr1_1:2023658-2023677 | Msa0000750:CDS | 30.0% |
| !!! | TGGTGGTTTTGATAATAGAA+TGG | - | chr1_1:2023678-2023697 | Msa0000750:CDS | 30.0% |
| !!! | GGTGGTTTTGATAATAGAAT+GGG | - | chr1_1:2023679-2023698 | Msa0000750:CDS | 30.0% |
| !!! | GTGGTTTTGATAATAGAATG+GGG | - | chr1_1:2023680-2023699 | Msa0000750:CDS | 30.0% |
| !!! | AGCGTTTTTTCAAGACAATT+TGG | - | chr1_1:2023738-2023757 | Msa0000750:CDS | 30.0% |
| TTAATAAAATGCCCCAGATT+TGG | + | chr1_1:2023790-2023809 | None:intergenic | 30.0% | |
| !! | GGGGCATTTTATTAACAATA+TGG | - | chr1_1:2023795-2023814 | Msa0000750:CDS | 30.0% |
| ! | TGACCTTCAAAATTTTCTTG+AGG | + | chr1_1:2023994-2024013 | None:intergenic | 30.0% |
| TTTGAAGGTCAAGTAAACTT+TGG | - | chr1_1:2024003-2024022 | Msa0000750:CDS | 30.0% | |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | - | chr1_1:2024093-2024112 | Msa0000750:CDS | 30.0% |
| !! | GAAGATTTTGATATCAACAC+AGG | - | chr1_1:2024132-2024151 | Msa0000750:CDS | 30.0% |
| ! | TTGTCTCATCAAGGAAATTT+TGG | - | chr1_1:2024210-2024229 | Msa0000750:CDS | 30.0% |
| TTTCATCAAAACAACTTTGG+TGG | - | chr1_1:2024429-2024448 | Msa0000750:CDS | 30.0% | |
| ! | AACTTTGGTGGCAATATTAA+TGG | - | chr1_1:2024441-2024460 | Msa0000750:CDS | 30.0% |
| GACAATCTTATGTGGTATTG+AGG | - | chr1_1:2023054-2023073 | Msa0000750:CDS | 35.0% | |
| !!! | ATTGATGGTTTTGTATCACC+TGG | + | chr1_1:2023100-2023119 | None:intergenic | 35.0% |
| !! | CAATGACATTGACTCAAACT+TGG | + | chr1_1:2023158-2023177 | None:intergenic | 35.0% |
| CAAGTTTGAGTCAATGTCAT+TGG | - | chr1_1:2023156-2023175 | Msa0000750:CDS | 35.0% | |
| !!! | GACTGACCAATTGACTTTTT+TGG | - | chr1_1:2023198-2023217 | Msa0000750:CDS | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | - | chr1_1:2023201-2023220 | Msa0000750:CDS | 35.0% |
| AGATCACTAGAAAGATGTCT+AGG | - | chr1_1:2023389-2023408 | Msa0000750:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | - | chr1_1:2023402-2023421 | Msa0000750:CDS | 35.0% | |
| TGTCTAGGCATTTAGAAAAG+GGG | - | chr1_1:2023404-2023423 | Msa0000750:CDS | 35.0% | |
| !! | GTAAAAGATATTGGTGCCAA+CGG | + | chr1_1:2023457-2023476 | None:intergenic | 35.0% |
| TTTACTTTACACAACGGTGA+TGG | - | chr1_1:2023472-2023491 | Msa0000750:CDS | 35.0% | |
| TTACTTTACACAACGGTGAT+GGG | - | chr1_1:2023473-2023492 | Msa0000750:CDS | 35.0% | |
| ! | CATAATGGGGTTAACATGTA+TGG | - | chr1_1:2023499-2023518 | Msa0000750:CDS | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | - | chr1_1:2023562-2023581 | Msa0000750:CDS | 35.0% |
| AGTGGTTTCAATAACAACCT+TGG | - | chr1_1:2023580-2023599 | Msa0000750:CDS | 35.0% | |
| ! | GCTAATCAAGCTAATTTTGG+TGG | - | chr1_1:2023661-2023680 | Msa0000750:CDS | 35.0% |
| TATCATGGAGATACCAAATC+TGG | - | chr1_1:2023774-2023793 | Msa0000750:CDS | 35.0% | |
| ATCATGGAGATACCAAATCT+GGG | - | chr1_1:2023775-2023794 | Msa0000750:CDS | 35.0% | |
| AACAATATGGGTAGCAACAT+TGG | - | chr1_1:2023808-2023827 | Msa0000750:CDS | 35.0% | |
| ACAATATGGGTAGCAACATT+GGG | - | chr1_1:2023809-2023828 | Msa0000750:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | - | chr1_1:2023835-2023854 | Msa0000750:CDS | 35.0% | |
| !! | CAAGGTTTTGATGACATTAC+AGG | - | chr1_1:2023910-2023929 | Msa0000750:CDS | 35.0% |
| TACCACATGCAAATCTGAAT+GGG | - | chr1_1:2023950-2023969 | Msa0000750:CDS | 35.0% | |
| ! | CCTTCAAAATTTTCTTGAGG+AGG | + | chr1_1:2023991-2024010 | None:intergenic | 35.0% |
| ! | CCTCCTCAAGAAAATTTTGA+AGG | - | chr1_1:2023988-2024007 | Msa0000750:CDS | 35.0% |
| ATACCACATTCAAATTCGAG+TGG | - | chr1_1:2024060-2024079 | Msa0000750:CDS | 35.0% | |
| ! | CTTCCTCAAGAAAATTTTGG+AGG | - | chr1_1:2024096-2024115 | Msa0000750:CDS | 35.0% |
| ATACCACCACATACAAATCT+TGG | - | chr1_1:2024168-2024187 | Msa0000750:CDS | 35.0% | |
| !! | TTTGGAGTTGATAACAACAC+AGG | - | chr1_1:2024228-2024247 | Msa0000750:CDS | 35.0% |
| GAAGTTCAAGACAACTTTAG+AGG | - | chr1_1:2024327-2024346 | Msa0000750:CDS | 35.0% | |
| GTGGCAATATTAATGGAGAT+GGG | - | chr1_1:2024448-2024467 | Msa0000750:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+TGG | - | chr1_1:2024454-2024473 | Msa0000750:CDS | 35.0% | |
| GACAATCTTATGTGGTATTG+AGG | - | chr1_1:2023054-2023073 | Msa0000750:CDS | 35.0% | |
| !!! | ATTGATGGTTTTGTATCACC+TGG | + | chr1_1:2023100-2023119 | None:intergenic | 35.0% |
| !! | CAATGACATTGACTCAAACT+TGG | + | chr1_1:2023158-2023177 | None:intergenic | 35.0% |
| CAAGTTTGAGTCAATGTCAT+TGG | - | chr1_1:2023156-2023175 | Msa0000750:CDS | 35.0% | |
| !!! | GACTGACCAATTGACTTTTT+TGG | - | chr1_1:2023198-2023217 | Msa0000750:CDS | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | - | chr1_1:2023201-2023220 | Msa0000750:CDS | 35.0% |
| AGATCACTAGAAAGATGTCT+AGG | - | chr1_1:2023389-2023408 | Msa0000750:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | - | chr1_1:2023402-2023421 | Msa0000750:CDS | 35.0% | |
| TGTCTAGGCATTTAGAAAAG+GGG | - | chr1_1:2023404-2023423 | Msa0000750:CDS | 35.0% | |
| !! | GTAAAAGATATTGGTGCCAA+CGG | + | chr1_1:2023457-2023476 | None:intergenic | 35.0% |
| TTTACTTTACACAACGGTGA+TGG | - | chr1_1:2023472-2023491 | Msa0000750:CDS | 35.0% | |
| TTACTTTACACAACGGTGAT+GGG | - | chr1_1:2023473-2023492 | Msa0000750:CDS | 35.0% | |
| ! | CATAATGGGGTTAACATGTA+TGG | - | chr1_1:2023499-2023518 | Msa0000750:CDS | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | - | chr1_1:2023562-2023581 | Msa0000750:CDS | 35.0% |
| AGTGGTTTCAATAACAACCT+TGG | - | chr1_1:2023580-2023599 | Msa0000750:CDS | 35.0% | |
| ! | GCTAATCAAGCTAATTTTGG+TGG | - | chr1_1:2023661-2023680 | Msa0000750:CDS | 35.0% |
| TATCATGGAGATACCAAATC+TGG | - | chr1_1:2023774-2023793 | Msa0000750:CDS | 35.0% | |
| ATCATGGAGATACCAAATCT+GGG | - | chr1_1:2023775-2023794 | Msa0000750:CDS | 35.0% | |
| AACAATATGGGTAGCAACAT+TGG | - | chr1_1:2023808-2023827 | Msa0000750:CDS | 35.0% | |
| ACAATATGGGTAGCAACATT+GGG | - | chr1_1:2023809-2023828 | Msa0000750:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | - | chr1_1:2023835-2023854 | Msa0000750:CDS | 35.0% | |
| !! | CAAGGTTTTGATGACATTAC+AGG | - | chr1_1:2023910-2023929 | Msa0000750:CDS | 35.0% |
| TACCACATGCAAATCTGAAT+GGG | - | chr1_1:2023950-2023969 | Msa0000750:CDS | 35.0% | |
| ! | CCTTCAAAATTTTCTTGAGG+AGG | + | chr1_1:2023991-2024010 | None:intergenic | 35.0% |
| ! | CCTCCTCAAGAAAATTTTGA+AGG | - | chr1_1:2023988-2024007 | Msa0000750:CDS | 35.0% |
| ATACCACATTCAAATTCGAG+TGG | - | chr1_1:2024060-2024079 | Msa0000750:CDS | 35.0% | |
| ! | CTTCCTCAAGAAAATTTTGG+AGG | - | chr1_1:2024096-2024115 | Msa0000750:CDS | 35.0% |
| ATACCACCACATACAAATCT+TGG | - | chr1_1:2024168-2024187 | Msa0000750:CDS | 35.0% | |
| !! | TTTGGAGTTGATAACAACAC+AGG | - | chr1_1:2024228-2024247 | Msa0000750:CDS | 35.0% |
| GAAGTTCAAGACAACTTTAG+AGG | - | chr1_1:2024327-2024346 | Msa0000750:CDS | 35.0% | |
| GTGGCAATATTAATGGAGAT+GGG | - | chr1_1:2024448-2024467 | Msa0000750:CDS | 35.0% | |
| ATATTAATGGAGATGGGATG+TGG | - | chr1_1:2024454-2024473 | Msa0000750:CDS | 35.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | - | chr1_1:2023024-2023043 | Msa0000750:CDS | 40.0% | |
| ! | GATTGTCACATGCTCCATTT+TGG | + | chr1_1:2023041-2023060 | None:intergenic | 40.0% |
| GAGCATGTGACAATCTTATG+TGG | - | chr1_1:2023046-2023065 | Msa0000750:CDS | 40.0% | |
| TACTTTACACAACGGTGATG+GGG | - | chr1_1:2023474-2023493 | Msa0000750:CDS | 40.0% | |
| CAACAACCCTTGTCAGATTT+GGG | - | chr1_1:2023535-2023554 | Msa0000750:CDS | 40.0% | |
| TAACAACCTTGGAAGTAGCA+TGG | - | chr1_1:2023591-2023610 | Msa0000750:CDS | 40.0% | |
| AACAACCTTGGAAGTAGCAT+GGG | - | chr1_1:2023592-2023611 | Msa0000750:CDS | 40.0% | |
| ATACCATCACCTGATTCTAG+TGG | - | chr1_1:2023703-2023722 | Msa0000750:CDS | 40.0% | |
| TCAAAACCACCACTAGAATC+AGG | + | chr1_1:2023715-2023734 | None:intergenic | 40.0% | |
| TCATGGAGATACCAAATCTG+GGG | - | chr1_1:2023776-2023795 | Msa0000750:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | - | chr1_1:2023838-2023857 | Msa0000750:CDS | 40.0% | |
| ! | TTGCCTCCTCAAGGATATTT+TGG | - | chr1_1:2023871-2023890 | Msa0000750:CDS | 40.0% |
| TGACCTCCAAAATATCCTTG+AGG | + | chr1_1:2023880-2023899 | None:intergenic | 40.0% | |
| ACATTACAGGTAGCAACACA+GGG | - | chr1_1:2023923-2023942 | Msa0000750:CDS | 40.0% | |
| CTACCACATGCAAATCTGAA+TGG | - | chr1_1:2023949-2023968 | Msa0000750:CDS | 40.0% | |
| TTCCCATTCAGATTTGCATG+TGG | + | chr1_1:2023955-2023974 | None:intergenic | 40.0% | |
| !!! | GGATGTTTTGATGACAACAC+AGG | - | chr1_1:2024024-2024043 | Msa0000750:CDS | 40.0% |
| ! | TTTGATGACAACACAGGTAG+CGG | - | chr1_1:2024030-2024049 | Msa0000750:CDS | 40.0% |
| ! | TGGCCTCCAAAATTTTCTTG+AGG | + | chr1_1:2024102-2024121 | None:intergenic | 40.0% |
| ACACCAAGATTTGTATGTGG+TGG | + | chr1_1:2024174-2024193 | None:intergenic | 40.0% | |
| CCAACACCAAGATTTGTATG+TGG | + | chr1_1:2024177-2024196 | None:intergenic | 40.0% | |
| ! | CCACATACAAATCTTGGTGT+TGG | - | chr1_1:2024174-2024193 | Msa0000750:CDS | 40.0% |
| GTTGATGTGTTGTCTCATCA+AGG | - | chr1_1:2024201-2024220 | Msa0000750:CDS | 40.0% | |
| ATACCACCTCATACAAATCC+TGG | - | chr1_1:2024264-2024283 | Msa0000750:CDS | 40.0% | |
| GTTGATGTGTTGTCTCATCA+AGG | - | chr1_1:2024201-2024220 | Msa0000750:CDS | 40.0% | |
| ! | TTGCTTGGATTTTCATGTGG+AGG | + | chr1_1:2024387-2024406 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | + | chr1_1:2024390-2024409 | None:intergenic | 40.0% |
| CCACATGAAAATCCAAGCAA+TGG | - | chr1_1:2024387-2024406 | Msa0000750:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | - | chr1_1:2024390-2024409 | Msa0000750:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | + | chr1_1:2024402-2024421 | None:intergenic | 40.0% | |
| GGTGGCAATATTAATGGAGA+TGG | - | chr1_1:2024447-2024466 | Msa0000750:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | - | chr1_1:2023024-2023043 | Msa0000750:CDS | 40.0% | |
| ! | GATTGTCACATGCTCCATTT+TGG | + | chr1_1:2023041-2023060 | None:intergenic | 40.0% |
| GAGCATGTGACAATCTTATG+TGG | - | chr1_1:2023046-2023065 | Msa0000750:CDS | 40.0% | |
| TACTTTACACAACGGTGATG+GGG | - | chr1_1:2023474-2023493 | Msa0000750:CDS | 40.0% | |
| CAACAACCCTTGTCAGATTT+GGG | - | chr1_1:2023535-2023554 | Msa0000750:CDS | 40.0% | |
| TAACAACCTTGGAAGTAGCA+TGG | - | chr1_1:2023591-2023610 | Msa0000750:CDS | 40.0% | |
| AACAACCTTGGAAGTAGCAT+GGG | - | chr1_1:2023592-2023611 | Msa0000750:CDS | 40.0% | |
| ATACCATCACCTGATTCTAG+TGG | - | chr1_1:2023703-2023722 | Msa0000750:CDS | 40.0% | |
| TCAAAACCACCACTAGAATC+AGG | + | chr1_1:2023715-2023734 | None:intergenic | 40.0% | |
| TCATGGAGATACCAAATCTG+GGG | - | chr1_1:2023776-2023795 | Msa0000750:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | - | chr1_1:2023838-2023857 | Msa0000750:CDS | 40.0% | |
| ! | TTGCCTCCTCAAGGATATTT+TGG | - | chr1_1:2023871-2023890 | Msa0000750:CDS | 40.0% |
| TGACCTCCAAAATATCCTTG+AGG | + | chr1_1:2023880-2023899 | None:intergenic | 40.0% | |
| ACATTACAGGTAGCAACACA+GGG | - | chr1_1:2023923-2023942 | Msa0000750:CDS | 40.0% | |
| CTACCACATGCAAATCTGAA+TGG | - | chr1_1:2023949-2023968 | Msa0000750:CDS | 40.0% | |
| TTCCCATTCAGATTTGCATG+TGG | + | chr1_1:2023955-2023974 | None:intergenic | 40.0% | |
| !!! | GGATGTTTTGATGACAACAC+AGG | - | chr1_1:2024024-2024043 | Msa0000750:CDS | 40.0% |
| ! | TTTGATGACAACACAGGTAG+CGG | - | chr1_1:2024030-2024049 | Msa0000750:CDS | 40.0% |
| ! | TGGCCTCCAAAATTTTCTTG+AGG | + | chr1_1:2024102-2024121 | None:intergenic | 40.0% |
| ACACCAAGATTTGTATGTGG+TGG | + | chr1_1:2024174-2024193 | None:intergenic | 40.0% | |
| CCAACACCAAGATTTGTATG+TGG | + | chr1_1:2024177-2024196 | None:intergenic | 40.0% | |
| ! | CCACATACAAATCTTGGTGT+TGG | - | chr1_1:2024174-2024193 | Msa0000750:CDS | 40.0% |
| GTTGATGTGTTGTCTCATCA+AGG | - | chr1_1:2024201-2024220 | Msa0000750:CDS | 40.0% | |
| ATACCACCTCATACAAATCC+TGG | - | chr1_1:2024264-2024283 | Msa0000750:CDS | 40.0% | |
| GTTGATGTGTTGTCTCATCA+AGG | - | chr1_1:2024201-2024220 | Msa0000750:CDS | 40.0% | |
| ! | TTGCTTGGATTTTCATGTGG+AGG | + | chr1_1:2024387-2024406 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | + | chr1_1:2024390-2024409 | None:intergenic | 40.0% |
| CCACATGAAAATCCAAGCAA+TGG | - | chr1_1:2024387-2024406 | Msa0000750:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | - | chr1_1:2024390-2024409 | Msa0000750:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | + | chr1_1:2024402-2024421 | None:intergenic | 40.0% | |
| GGTGGCAATATTAATGGAGA+TGG | - | chr1_1:2024447-2024466 | Msa0000750:CDS | 40.0% | |
| ! | ATGTGGTATTGAGGCATGTG+CGG | - | chr1_1:2023063-2023082 | Msa0000750:CDS | 45.0% |
| GGTGGAGGAGGATTATTAAG+AGG | + | chr1_1:2023436-2023455 | None:intergenic | 45.0% | |
| TAATAATCCTCCTCCACCGT+TGG | - | chr1_1:2023438-2023457 | Msa0000750:CDS | 45.0% | |
| !! | AAAGATATTGGTGCCAACGG+TGG | + | chr1_1:2023454-2023473 | None:intergenic | 45.0% |
| CCAAATCTGACAAGGGTTGT+TGG | + | chr1_1:2023537-2023556 | None:intergenic | 45.0% | |
| CCAACAACCCTTGTCAGATT+TGG | - | chr1_1:2023534-2023553 | Msa0000750:CDS | 45.0% | |
| TTCTCGCCCAAATCTGACAA+GGG | + | chr1_1:2023544-2023563 | None:intergenic | 45.0% | |
| TTTCTCGCCCAAATCTGACA+AGG | + | chr1_1:2023545-2023564 | None:intergenic | 45.0% | |
| ACAACCTTGGAAGTAGCATG+GGG | - | chr1_1:2023593-2023612 | Msa0000750:CDS | 45.0% | |
| !! | TGGTGGTGGTTGTGATAACT+TGG | - | chr1_1:2023639-2023658 | Msa0000750:CDS | 45.0% |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | - | chr1_1:2023844-2023863 | Msa0000750:CDS | 45.0% |
| CCTCCAAAATATCCTTGAGG+AGG | + | chr1_1:2023877-2023896 | None:intergenic | 45.0% | |
| !! | CCTCCTCAAGGATATTTTGG+AGG | - | chr1_1:2023874-2023893 | Msa0000750:CDS | 45.0% |
| GGAGGTCAAAGCAACTTTCA+AGG | - | chr1_1:2023892-2023911 | Msa0000750:CDS | 45.0% | |
| GACATTACAGGTAGCAACAC+AGG | - | chr1_1:2023922-2023941 | Msa0000750:CDS | 45.0% | |
| CCACCACTCGAATTTGAATG+TGG | + | chr1_1:2024066-2024085 | None:intergenic | 45.0% | |
| CCACATTCAAATTCGAGTGG+TGG | - | chr1_1:2024063-2024082 | Msa0000750:CDS | 45.0% | |
| ACACCAGGATTTGTATGAGG+TGG | + | chr1_1:2024270-2024289 | None:intergenic | 45.0% | |
| CCAACACCAGGATTTGTATG+AGG | + | chr1_1:2024273-2024292 | None:intergenic | 45.0% | |
| CCTCATACAAATCCTGGTGT+TGG | - | chr1_1:2024270-2024289 | Msa0000750:CDS | 45.0% | |
| ACATCAACATCACCAACACC+AGG | + | chr1_1:2024189-2024208 | None:intergenic | 45.0% | |
| ! | ATGTGGTATTGAGGCATGTG+CGG | - | chr1_1:2023063-2023082 | Msa0000750:CDS | 45.0% |
| GGTGGAGGAGGATTATTAAG+AGG | + | chr1_1:2023436-2023455 | None:intergenic | 45.0% | |
| TAATAATCCTCCTCCACCGT+TGG | - | chr1_1:2023438-2023457 | Msa0000750:CDS | 45.0% | |
| !! | AAAGATATTGGTGCCAACGG+TGG | + | chr1_1:2023454-2023473 | None:intergenic | 45.0% |
| CCAAATCTGACAAGGGTTGT+TGG | + | chr1_1:2023537-2023556 | None:intergenic | 45.0% | |
| CCAACAACCCTTGTCAGATT+TGG | - | chr1_1:2023534-2023553 | Msa0000750:CDS | 45.0% | |
| TTCTCGCCCAAATCTGACAA+GGG | + | chr1_1:2023544-2023563 | None:intergenic | 45.0% | |
| TTTCTCGCCCAAATCTGACA+AGG | + | chr1_1:2023545-2023564 | None:intergenic | 45.0% | |
| ACAACCTTGGAAGTAGCATG+GGG | - | chr1_1:2023593-2023612 | Msa0000750:CDS | 45.0% | |
| !! | TGGTGGTGGTTGTGATAACT+TGG | - | chr1_1:2023639-2023658 | Msa0000750:CDS | 45.0% |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | - | chr1_1:2023844-2023863 | Msa0000750:CDS | 45.0% |
| CCTCCAAAATATCCTTGAGG+AGG | + | chr1_1:2023877-2023896 | None:intergenic | 45.0% | |
| !! | CCTCCTCAAGGATATTTTGG+AGG | - | chr1_1:2023874-2023893 | Msa0000750:CDS | 45.0% |
| GGAGGTCAAAGCAACTTTCA+AGG | - | chr1_1:2023892-2023911 | Msa0000750:CDS | 45.0% | |
| GACATTACAGGTAGCAACAC+AGG | - | chr1_1:2023922-2023941 | Msa0000750:CDS | 45.0% | |
| CCACCACTCGAATTTGAATG+TGG | + | chr1_1:2024066-2024085 | None:intergenic | 45.0% | |
| CCACATTCAAATTCGAGTGG+TGG | - | chr1_1:2024063-2024082 | Msa0000750:CDS | 45.0% | |
| ACACCAGGATTTGTATGAGG+TGG | + | chr1_1:2024270-2024289 | None:intergenic | 45.0% | |
| CCAACACCAGGATTTGTATG+AGG | + | chr1_1:2024273-2024292 | None:intergenic | 45.0% | |
| CCTCATACAAATCCTGGTGT+TGG | - | chr1_1:2024270-2024289 | Msa0000750:CDS | 45.0% | |
| ACATCAACATCACCAACACC+AGG | + | chr1_1:2024189-2024208 | None:intergenic | 45.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | - | chr1_1:2023074-2023093 | Msa0000750:CDS | 50.0% | |
| GCAGGAGATGGCCATATTGA+TGG | + | chr1_1:2023115-2023134 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTGCAG+TGG | - | chr1_1:2023117-2023136 | Msa0000750:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACTGC+AGG | + | chr1_1:2023133-2023152 | None:intergenic | 50.0% | |
| !! | AACGGTGATGGGGTGCATAA+TGG | - | chr1_1:2023484-2023503 | Msa0000750:CDS | 50.0% |
| !! | ACGGTGATGGGGTGCATAAT+GGG | - | chr1_1:2023485-2023504 | Msa0000750:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+AGG | + | chr1_1:2023600-2023619 | None:intergenic | 50.0% |
| CCACTAAGATCTGCAAGTGG+AGG | + | chr1_1:2023622-2023641 | None:intergenic | 50.0% | |
| CCTCCACTTGCAGATCTTAG+TGG | - | chr1_1:2023619-2023638 | Msa0000750:CDS | 50.0% | |
| CCACCACTAAGATCTGCAAG+TGG | + | chr1_1:2023625-2023644 | None:intergenic | 50.0% | |
| CCACTTGCAGATCTTAGTGG+TGG | - | chr1_1:2023622-2023641 | Msa0000750:CDS | 50.0% | |
| CTTGCAGATCTTAGTGGTGG+TGG | - | chr1_1:2023625-2023644 | Msa0000750:CDS | 50.0% | |
| CCACCACTAGAATCAGGTGA+TGG | + | chr1_1:2023709-2023728 | None:intergenic | 50.0% | |
| CCATCACCTGATTCTAGTGG+TGG | - | chr1_1:2023706-2023725 | Msa0000750:CDS | 50.0% | |
| AACACACCTACACCACCACT+AGG | + | chr1_1:2023853-2023872 | None:intergenic | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | - | chr1_1:2023074-2023093 | Msa0000750:CDS | 50.0% | |
| GCAGGAGATGGCCATATTGA+TGG | + | chr1_1:2023115-2023134 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTGCAG+TGG | - | chr1_1:2023117-2023136 | Msa0000750:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACTGC+AGG | + | chr1_1:2023133-2023152 | None:intergenic | 50.0% | |
| !! | AACGGTGATGGGGTGCATAA+TGG | - | chr1_1:2023484-2023503 | Msa0000750:CDS | 50.0% |
| !! | ACGGTGATGGGGTGCATAAT+GGG | - | chr1_1:2023485-2023504 | Msa0000750:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+AGG | + | chr1_1:2023600-2023619 | None:intergenic | 50.0% |
| CCACTAAGATCTGCAAGTGG+AGG | + | chr1_1:2023622-2023641 | None:intergenic | 50.0% | |
| CCTCCACTTGCAGATCTTAG+TGG | - | chr1_1:2023619-2023638 | Msa0000750:CDS | 50.0% | |
| CCACCACTAAGATCTGCAAG+TGG | + | chr1_1:2023625-2023644 | None:intergenic | 50.0% | |
| CCACTTGCAGATCTTAGTGG+TGG | - | chr1_1:2023622-2023641 | Msa0000750:CDS | 50.0% | |
| CTTGCAGATCTTAGTGGTGG+TGG | - | chr1_1:2023625-2023644 | Msa0000750:CDS | 50.0% | |
| CCACCACTAGAATCAGGTGA+TGG | + | chr1_1:2023709-2023728 | None:intergenic | 50.0% | |
| CCATCACCTGATTCTAGTGG+TGG | - | chr1_1:2023706-2023725 | Msa0000750:CDS | 50.0% | |
| AACACACCTACACCACCACT+AGG | + | chr1_1:2023853-2023872 | None:intergenic | 50.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | - | chr1_1:2023073-2023092 | Msa0000750:CDS | 55.0% | |
| TCTTCAGCCACTGCAGGAGA+TGG | + | chr1_1:2023127-2023146 | None:intergenic | 55.0% | |
| !! | GATATTGGTGCCAACGGTGG+AGG | + | chr1_1:2023451-2023470 | None:intergenic | 55.0% |
| !! | CGGTGATGGGGTGCATAATG+GGG | - | chr1_1:2023486-2023505 | Msa0000750:CDS | 55.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | - | chr1_1:2023862-2023881 | Msa0000750:CDS | 55.0% | |
| ! | ACAACACAGGTAGCGGCATG+TGG | - | chr1_1:2024037-2024056 | Msa0000750:CDS | 55.0% |
| TACGGGAGCAACTTCAACCC+TGG | - | chr1_1:2024507-2024526 | Msa0000750:CDS | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | - | chr1_1:2023073-2023092 | Msa0000750:CDS | 55.0% | |
| TCTTCAGCCACTGCAGGAGA+TGG | + | chr1_1:2023127-2023146 | None:intergenic | 55.0% | |
| !! | GATATTGGTGCCAACGGTGG+AGG | + | chr1_1:2023451-2023470 | None:intergenic | 55.0% |
| !! | CGGTGATGGGGTGCATAATG+GGG | - | chr1_1:2023486-2023505 | Msa0000750:CDS | 55.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | - | chr1_1:2023862-2023881 | Msa0000750:CDS | 55.0% | |
| ! | ACAACACAGGTAGCGGCATG+TGG | - | chr1_1:2024037-2024056 | Msa0000750:CDS | 55.0% |
| TACGGGAGCAACTTCAACCC+TGG | - | chr1_1:2024507-2024526 | Msa0000750:CDS | 55.0% | |
| TGTGCGGTTGTGTTTGGGCC+AGG | - | chr1_1:2023079-2023098 | Msa0000750:CDS | 60.0% | |
| !! | ATTGGTGCCAACGGTGGAGG+AGG | + | chr1_1:2023448-2023467 | None:intergenic | 60.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | - | chr1_1:2023079-2023098 | Msa0000750:CDS | 60.0% | |
| !! | ATTGGTGCCAACGGTGGAGG+AGG | + | chr1_1:2023448-2023467 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2022941 | 2024545 | 2022941 | ID=Msa0000750;Name=Msa0000750 |
| chr1_1 | mRNA | 2022941 | 2024545 | 2022941 | ID=Msa0000750-mRNA-1;Parent=Msa0000750;Name=Msa0000750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|534 |
| chr1_1 | exon | 2022941 | 2024545 | 2022941 | ID=Msa0000750-mRNA-1:exon:401;Parent=Msa0000750-mRNA-1 |
| chr1_1 | CDS | 2022941 | 2024545 | 2022941 | ID=Msa0000750-mRNA-1:cds;Parent=Msa0000750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
