Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380290 | XP_013450231.1 | 76.471 | 340 | 35 | 4 | 1 | 299 | 35 | 370 | 2.47e-158 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380290 | A0A072U3F6 | 76.471 | 340 | 35 | 4 | 1 | 299 | 35 | 370 | 1.18e-158 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000750 | Msa1380290 | 0.818650 | 1.754724e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380290 | MtrunA17_Chr7g0267601 | 76.471 | 340 | 35 | 4 | 1 | 299 | 35 | 370 | 2.27e-162 | 461 |
| Msa1380290 | MtrunA17_Chr4g0008701 | 75.882 | 340 | 41 | 3 | 1 | 299 | 35 | 374 | 7.15e-156 | 445 |
| Msa1380290 | MtrunA17_Chr4g0008701 | 42.667 | 150 | 69 | 7 | 158 | 297 | 343 | 485 | 2.55e-13 | 70.1 |
| Msa1380290 | MtrunA17_Chr3g0128721 | 39.891 | 366 | 137 | 6 | 1 | 292 | 35 | 391 | 3.22e-66 | 217 |
| Msa1380290 | MtrunA17_Chr3g0128721 | 35.912 | 181 | 78 | 5 | 156 | 299 | 295 | 474 | 5.25e-15 | 75.1 |
| Msa1380290 | MtrunA17_Chr8g0361741 | 44.033 | 243 | 108 | 2 | 12 | 226 | 42 | 284 | 2.32e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTAATCAAGCTAATTT+TGG | 0.158650 | tig0020342:+24858 | Msa1380290:CDS |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | tig0020342:+25071 | Msa1380290:CDS |
| TTGACTCAAACTTGGTTATT+AGG | 0.210241 | tig0020342:-24346 | None:intergenic |
| CCAACAACCCTTGTCAGATT+TGG | 0.245325 | tig0020342:+24734 | Msa1380290:CDS |
| TTTCTTTGTTGATCTTTCTA+AGG | 0.250528 | tig0020342:-24449 | None:intergenic |
| AACGGTGATGGGGTGCATAA+TGG | 0.258877 | tig0020342:+24684 | Msa1380290:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.308700 | tig0020342:+24467 | Msa1380290:CDS |
| TTAATAAAATGCCCCAGATT+TGG | 0.322615 | tig0020342:-24987 | None:intergenic |
| ACGGTGATGGGGTGCATAAT+GGG | 0.323141 | tig0020342:+24685 | Msa1380290:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.339289 | tig0020342:+24272 | Msa1380290:CDS |
| CAACAACCCTTGTCAGATTT+GGG | 0.353572 | tig0020342:+24735 | Msa1380290:CDS |
| TATCATGGAGATACCAAATC+TGG | 0.379695 | tig0020342:+24974 | Msa1380290:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | tig0020342:+24273 | Msa1380290:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | tig0020342:+24300 | Msa1380290:CDS |
| GCAGGAGATGGCCATATTGA+TGG | 0.394229 | tig0020342:-24311 | None:intergenic |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | tig0020342:+24468 | Msa1380290:CDS |
| AACAATATGGGTAGCAACAT+TGG | 0.431457 | tig0020342:+25008 | Msa1380290:CDS |
| GATGTCTAGGCATTTAGAAA+AGG | 0.433553 | tig0020342:+24602 | Msa1380290:CDS |
| ATGTCTAGGCATTTAGAAAA+GGG | 0.436802 | tig0020342:+24603 | Msa1380290:CDS |
| CCTCCACTTGCAGATCTTAG+TGG | 0.439117 | tig0020342:+24819 | Msa1380290:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | tig0020342:+24278 | Msa1380290:CDS |
| CATAATGGGGTTAACATGTA+TGG | 0.446371 | tig0020342:+24699 | Msa1380290:CDS |
| CCAAATCTGACAAGGGTTGT+TGG | 0.456247 | tig0020342:-24734 | None:intergenic |
| TTACTTTACACAACGGTGAT+GGG | 0.461878 | tig0020342:+24673 | Msa1380290:CDS |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | tig0020342:+25092 | Msa1380290:CDS |
| TTGTGTAAAGTAAAAGATAT+TGG | 0.463560 | tig0020342:-24663 | None:intergenic |
| TACCACATGCAAATCTGAAT+GGG | 0.471278 | tig0020342:+25150 | Msa1380290:CDS |
| GCCTCCTCAAGAAAATTTGA+AGG | 0.471463 | tig0020342:+25187 | Msa1380290:CDS |
| TTTACTTTACACAACGGTGA+TGG | 0.473941 | tig0020342:+24672 | Msa1380290:CDS |
| ACAATATGGGTAGCAACATT+GGG | 0.477464 | tig0020342:+25009 | Msa1380290:CDS |
| CTACCACATGCAAATCTGAA+TGG | 0.479159 | tig0020342:+25149 | Msa1380290:CDS |
| TCAAAACCACCACTAGAATC+AGG | 0.484744 | tig0020342:-24912 | None:intergenic |
| GATATTGGTGCCAACGGTGG+AGG | 0.504265 | tig0020342:-24648 | None:intergenic |
| CTTGCAGATCTTAGTGGTGG+TGG | 0.505108 | tig0020342:+24825 | Msa1380290:CDS |
| ATTAGGTCTTCAGCCACTGC+AGG | 0.513329 | tig0020342:-24329 | None:intergenic |
| AACAACCTTGGAAGTAGCAT+GGG | 0.513933 | tig0020342:+24792 | Msa1380290:CDS |
| ATTGGTGCCAACGGTGGAGG+AGG | 0.517191 | tig0020342:-24645 | None:intergenic |
| GACATTACAGGTAGCAACAC+AGG | 0.536241 | tig0020342:+25122 | Msa1380290:CDS |
| GGTGGAGGAGGATTATTAAG+AGG | 0.544411 | tig0020342:-24633 | None:intergenic |
| ATCATGGAGATACCAAATCT+GGG | 0.548418 | tig0020342:+24975 | Msa1380290:CDS |
| TCTTCAGCCACTGCAGGAGA+TGG | 0.560210 | tig0020342:-24323 | None:intergenic |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | tig0020342:+24839 | Msa1380290:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | tig0020342:+24589 | Msa1380290:CDS |
| TAACAACCTTGGAAGTAGCA+TGG | 0.574908 | tig0020342:+24791 | Msa1380290:CDS |
| CCATCACCTGATTCTAGTGG+TGG | 0.577153 | tig0020342:+24906 | Msa1380290:CDS |
| TACTTTACACAACGGTGATG+GGG | 0.579959 | tig0020342:+24674 | Msa1380290:CDS |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | tig0020342:+25062 | Msa1380290:CDS |
| TAATAATCCTCCTCCACCGT+TGG | 0.582273 | tig0020342:+24638 | Msa1380290:CDS |
| AGTGGTTTCAATAACAACCT+TGG | 0.589310 | tig0020342:+24780 | Msa1380290:CDS |
| GTATCCCCATGCTACTTCCA+AGG | 0.589387 | tig0020342:-24797 | None:intergenic |
| CGGTGATGGGGTGCATAATG+GGG | 0.590425 | tig0020342:+24686 | Msa1380290:CDS |
| GTAAAAGATATTGGTGCCAA+CGG | 0.592046 | tig0020342:-24654 | None:intergenic |
| GACAATCTTATGTGGTATTG+AGG | 0.594613 | tig0020342:+24253 | Msa1380290:CDS |
| TTTCTCGCCCAAATCTGACA+AGG | 0.596335 | tig0020342:-24742 | None:intergenic |
| TTCTCGCCCAAATCTGACAA+GGG | 0.612284 | tig0020342:-24741 | None:intergenic |
| AAAGATATTGGTGCCAACGG+TGG | 0.617732 | tig0020342:-24651 | None:intergenic |
| AAAGTTGATCAAATGAGCAG+TGG | 0.618596 | tig0020342:+24762 | Msa1380290:CDS |
| TGTCTAGGCATTTAGAAAAG+GGG | 0.623976 | tig0020342:+24604 | Msa1380290:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | tig0020342:+25044 | Msa1380290:CDS |
| CCACTTGCAGATCTTAGTGG+TGG | 0.641334 | tig0020342:+24822 | Msa1380290:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | tig0020342:+24498 | Msa1380290:CDS |
| AACACACCTACACCACCACT+AGG | 0.650603 | tig0020342:-25050 | None:intergenic |
| ATACCATCACCTGATTCTAG+TGG | 0.652667 | tig0020342:+24903 | Msa1380290:CDS |
| AATATGGCCATCTCCTGCAG+TGG | 0.655817 | tig0020342:+24316 | Msa1380290:CDS |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | tig0020342:-25074 | None:intergenic |
| ATGTGGTATTGAGGCATGTG+CGG | 0.658684 | tig0020342:+24262 | Msa1380290:CDS |
| CCACCACTAGAATCAGGTGA+TGG | 0.659191 | tig0020342:-24906 | None:intergenic |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | tig0020342:-25077 | None:intergenic |
| TTCCCATTCAGATTTGCATG+TGG | 0.661550 | tig0020342:-25152 | None:intergenic |
| GAGCATGTGACAATCTTATG+TGG | 0.668241 | tig0020342:+24245 | Msa1380290:CDS |
| ACATTACAGGTAGCAACACA+GGG | 0.671623 | tig0020342:+25123 | Msa1380290:CDS |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | tig0020342:+25038 | Msa1380290:CDS |
| CCACTAAGATCTGCAAGTGG+AGG | 0.680631 | tig0020342:-24819 | None:intergenic |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | tig0020342:+25035 | Msa1380290:CDS |
| TCATGGAGATACCAAATCTG+GGG | 0.689796 | tig0020342:+24976 | Msa1380290:CDS |
| CCACCACTAAGATCTGCAAG+TGG | 0.694900 | tig0020342:-24822 | None:intergenic |
| ACAACCTTGGAAGTAGCATG+GGG | 0.697964 | tig0020342:+24793 | Msa1380290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTGTAAAGTAAAAGATAT+TGG | - | tig0020342:24666-24685 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTACACAA+CGG | + | tig0020342:24666-24685 | Msa1380290:CDS | 20.0% |
| !! | TTGTGTAAAGTAAAAGATAT+TGG | - | tig0020342:24666-24685 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTACACAA+CGG | + | tig0020342:24666-24685 | Msa1380290:CDS | 20.0% |
| ! | TTTCTTTGTTGATCTTTCTA+AGG | - | tig0020342:24452-24471 | None:intergenic | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | tig0020342:24467-24486 | Msa1380290:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | tig0020342:24468-24487 | Msa1380290:CDS | 25.0% |
| !!! | GGAAAATTTTGATAGTATCA+TGG | + | tig0020342:24959-24978 | Msa1380290:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+GGG | + | tig0020342:24996-25015 | Msa1380290:CDS | 25.0% |
| ! | TTTCTTTGTTGATCTTTCTA+AGG | - | tig0020342:24452-24471 | None:intergenic | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | tig0020342:24467-24486 | Msa1380290:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | tig0020342:24468-24487 | Msa1380290:CDS | 25.0% |
| !!! | GGAAAATTTTGATAGTATCA+TGG | + | tig0020342:24959-24978 | Msa1380290:CDS | 25.0% |
| !! | GGGCATTTTATTAACAATAT+GGG | + | tig0020342:24996-25015 | Msa1380290:CDS | 25.0% |
| GTGATACAAAACCATCAATA+TGG | + | tig0020342:24300-24319 | Msa1380290:CDS | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | - | tig0020342:24349-24368 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | - | tig0020342:24406-24425 | None:intergenic | 30.0% | |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | + | tig0020342:24406-24425 | Msa1380290:intron | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | + | tig0020342:24407-24426 | Msa1380290:intron | 30.0% |
| ATGCATCAAATTGAAAACGA+AGG | + | tig0020342:24498-24517 | Msa1380290:CDS | 30.0% | |
| ATGTCTAGGCATTTAGAAAA+GGG | + | tig0020342:24603-24622 | Msa1380290:CDS | 30.0% | |
| ! | TTGGCTAATCAAGCTAATTT+TGG | + | tig0020342:24858-24877 | Msa1380290:CDS | 30.0% |
| !!! | TGGTGGTTTTGATAATAGAA+TGG | + | tig0020342:24878-24897 | Msa1380290:CDS | 30.0% |
| !!! | GGTGGTTTTGATAATAGAAT+GGG | + | tig0020342:24879-24898 | Msa1380290:CDS | 30.0% |
| !!! | GTGGTTTTGATAATAGAATG+GGG | + | tig0020342:24880-24899 | Msa1380290:CDS | 30.0% |
| !!! | AGCGTTTTTTCAAGACAATT+TGG | + | tig0020342:24938-24957 | Msa1380290:CDS | 30.0% |
| TTAATAAAATGCCCCAGATT+TGG | - | tig0020342:24990-25009 | None:intergenic | 30.0% | |
| !! | GGGGCATTTTATTAACAATA+TGG | + | tig0020342:24995-25014 | Msa1380290:CDS | 30.0% |
| ! | TTGACCTTCAAATTTTCTTG+AGG | - | tig0020342:25194-25213 | None:intergenic | 30.0% |
| GTGATACAAAACCATCAATA+TGG | + | tig0020342:24300-24319 | Msa1380290:CDS | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | - | tig0020342:24349-24368 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | - | tig0020342:24406-24425 | None:intergenic | 30.0% | |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | + | tig0020342:24406-24425 | Msa1380290:intron | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | + | tig0020342:24407-24426 | Msa1380290:intron | 30.0% |
| ATGCATCAAATTGAAAACGA+AGG | + | tig0020342:24498-24517 | Msa1380290:CDS | 30.0% | |
| ATGTCTAGGCATTTAGAAAA+GGG | + | tig0020342:24603-24622 | Msa1380290:CDS | 30.0% | |
| ! | TTGGCTAATCAAGCTAATTT+TGG | + | tig0020342:24858-24877 | Msa1380290:CDS | 30.0% |
| !!! | TGGTGGTTTTGATAATAGAA+TGG | + | tig0020342:24878-24897 | Msa1380290:CDS | 30.0% |
| !!! | GGTGGTTTTGATAATAGAAT+GGG | + | tig0020342:24879-24898 | Msa1380290:CDS | 30.0% |
| !!! | GTGGTTTTGATAATAGAATG+GGG | + | tig0020342:24880-24899 | Msa1380290:CDS | 30.0% |
| !!! | AGCGTTTTTTCAAGACAATT+TGG | + | tig0020342:24938-24957 | Msa1380290:CDS | 30.0% |
| TTAATAAAATGCCCCAGATT+TGG | - | tig0020342:24990-25009 | None:intergenic | 30.0% | |
| !! | GGGGCATTTTATTAACAATA+TGG | + | tig0020342:24995-25014 | Msa1380290:CDS | 30.0% |
| ! | TTGACCTTCAAATTTTCTTG+AGG | - | tig0020342:25194-25213 | None:intergenic | 30.0% |
| GACAATCTTATGTGGTATTG+AGG | + | tig0020342:24253-24272 | Msa1380290:CDS | 35.0% | |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | tig0020342:24299-24318 | None:intergenic | 35.0% |
| !! | CAATGACATTGACTCAAACT+TGG | - | tig0020342:24357-24376 | None:intergenic | 35.0% |
| CAAGTTTGAGTCAATGTCAT+TGG | + | tig0020342:24355-24374 | Msa1380290:intron | 35.0% | |
| !!! | GACTGACCAATTGACTTTTT+TGG | + | tig0020342:24397-24416 | Msa1380290:intron | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | + | tig0020342:24400-24419 | Msa1380290:intron | 35.0% |
| AGATCACTAGAAAGATGTCT+AGG | + | tig0020342:24589-24608 | Msa1380290:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | tig0020342:24602-24621 | Msa1380290:CDS | 35.0% | |
| TGTCTAGGCATTTAGAAAAG+GGG | + | tig0020342:24604-24623 | Msa1380290:CDS | 35.0% | |
| !! | GTAAAAGATATTGGTGCCAA+CGG | - | tig0020342:24657-24676 | None:intergenic | 35.0% |
| TTTACTTTACACAACGGTGA+TGG | + | tig0020342:24672-24691 | Msa1380290:CDS | 35.0% | |
| TTACTTTACACAACGGTGAT+GGG | + | tig0020342:24673-24692 | Msa1380290:CDS | 35.0% | |
| ! | CATAATGGGGTTAACATGTA+TGG | + | tig0020342:24699-24718 | Msa1380290:CDS | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | tig0020342:24762-24781 | Msa1380290:CDS | 35.0% |
| AGTGGTTTCAATAACAACCT+TGG | + | tig0020342:24780-24799 | Msa1380290:CDS | 35.0% | |
| ! | GCTAATCAAGCTAATTTTGG+TGG | + | tig0020342:24861-24880 | Msa1380290:CDS | 35.0% |
| TATCATGGAGATACCAAATC+TGG | + | tig0020342:24974-24993 | Msa1380290:CDS | 35.0% | |
| ATCATGGAGATACCAAATCT+GGG | + | tig0020342:24975-24994 | Msa1380290:CDS | 35.0% | |
| AACAATATGGGTAGCAACAT+TGG | + | tig0020342:25008-25027 | Msa1380290:CDS | 35.0% | |
| ACAATATGGGTAGCAACATT+GGG | + | tig0020342:25009-25028 | Msa1380290:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | tig0020342:25035-25054 | Msa1380290:CDS | 35.0% | |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | tig0020342:25110-25129 | Msa1380290:CDS | 35.0% |
| TACCACATGCAAATCTGAAT+GGG | + | tig0020342:25150-25169 | Msa1380290:CDS | 35.0% | |
| ! | ACCTTCAAATTTTCTTGAGG+AGG | - | tig0020342:25191-25210 | None:intergenic | 35.0% |
| GACAATCTTATGTGGTATTG+AGG | + | tig0020342:24253-24272 | Msa1380290:CDS | 35.0% | |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | tig0020342:24299-24318 | None:intergenic | 35.0% |
| !! | CAATGACATTGACTCAAACT+TGG | - | tig0020342:24357-24376 | None:intergenic | 35.0% |
| CAAGTTTGAGTCAATGTCAT+TGG | + | tig0020342:24355-24374 | Msa1380290:intron | 35.0% | |
| !!! | GACTGACCAATTGACTTTTT+TGG | + | tig0020342:24397-24416 | Msa1380290:intron | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | + | tig0020342:24400-24419 | Msa1380290:intron | 35.0% |
| AGATCACTAGAAAGATGTCT+AGG | + | tig0020342:24589-24608 | Msa1380290:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | tig0020342:24602-24621 | Msa1380290:CDS | 35.0% | |
| TGTCTAGGCATTTAGAAAAG+GGG | + | tig0020342:24604-24623 | Msa1380290:CDS | 35.0% | |
| !! | GTAAAAGATATTGGTGCCAA+CGG | - | tig0020342:24657-24676 | None:intergenic | 35.0% |
| TTTACTTTACACAACGGTGA+TGG | + | tig0020342:24672-24691 | Msa1380290:CDS | 35.0% | |
| TTACTTTACACAACGGTGAT+GGG | + | tig0020342:24673-24692 | Msa1380290:CDS | 35.0% | |
| ! | CATAATGGGGTTAACATGTA+TGG | + | tig0020342:24699-24718 | Msa1380290:CDS | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | tig0020342:24762-24781 | Msa1380290:CDS | 35.0% |
| AGTGGTTTCAATAACAACCT+TGG | + | tig0020342:24780-24799 | Msa1380290:CDS | 35.0% | |
| ! | GCTAATCAAGCTAATTTTGG+TGG | + | tig0020342:24861-24880 | Msa1380290:CDS | 35.0% |
| TATCATGGAGATACCAAATC+TGG | + | tig0020342:24974-24993 | Msa1380290:CDS | 35.0% | |
| ATCATGGAGATACCAAATCT+GGG | + | tig0020342:24975-24994 | Msa1380290:CDS | 35.0% | |
| AACAATATGGGTAGCAACAT+TGG | + | tig0020342:25008-25027 | Msa1380290:CDS | 35.0% | |
| ACAATATGGGTAGCAACATT+GGG | + | tig0020342:25009-25028 | Msa1380290:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | tig0020342:25035-25054 | Msa1380290:CDS | 35.0% | |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | tig0020342:25110-25129 | Msa1380290:CDS | 35.0% |
| TACCACATGCAAATCTGAAT+GGG | + | tig0020342:25150-25169 | Msa1380290:CDS | 35.0% | |
| ! | ACCTTCAAATTTTCTTGAGG+AGG | - | tig0020342:25191-25210 | None:intergenic | 35.0% |
| GAGCATGTGACAATCTTATG+TGG | + | tig0020342:24245-24264 | Msa1380290:CDS | 40.0% | |
| TACTTTACACAACGGTGATG+GGG | + | tig0020342:24674-24693 | Msa1380290:CDS | 40.0% | |
| CAACAACCCTTGTCAGATTT+GGG | + | tig0020342:24735-24754 | Msa1380290:CDS | 40.0% | |
| TAACAACCTTGGAAGTAGCA+TGG | + | tig0020342:24791-24810 | Msa1380290:CDS | 40.0% | |
| AACAACCTTGGAAGTAGCAT+GGG | + | tig0020342:24792-24811 | Msa1380290:CDS | 40.0% | |
| ATACCATCACCTGATTCTAG+TGG | + | tig0020342:24903-24922 | Msa1380290:CDS | 40.0% | |
| TCAAAACCACCACTAGAATC+AGG | - | tig0020342:24915-24934 | None:intergenic | 40.0% | |
| TCATGGAGATACCAAATCTG+GGG | + | tig0020342:24976-24995 | Msa1380290:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | tig0020342:25038-25057 | Msa1380290:CDS | 40.0% | |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | tig0020342:25071-25090 | Msa1380290:CDS | 40.0% |
| TGACCTCCAAAATATCCTTG+AGG | - | tig0020342:25080-25099 | None:intergenic | 40.0% | |
| ACATTACAGGTAGCAACACA+GGG | + | tig0020342:25123-25142 | Msa1380290:CDS | 40.0% | |
| CTACCACATGCAAATCTGAA+TGG | + | tig0020342:25149-25168 | Msa1380290:CDS | 40.0% | |
| TTCCCATTCAGATTTGCATG+TGG | - | tig0020342:25155-25174 | None:intergenic | 40.0% | |
| GCCTCCTCAAGAAAATTTGA+AGG | + | tig0020342:25187-25206 | Msa1380290:CDS | 40.0% | |
| GAGCATGTGACAATCTTATG+TGG | + | tig0020342:24245-24264 | Msa1380290:CDS | 40.0% | |
| TACTTTACACAACGGTGATG+GGG | + | tig0020342:24674-24693 | Msa1380290:CDS | 40.0% | |
| CAACAACCCTTGTCAGATTT+GGG | + | tig0020342:24735-24754 | Msa1380290:CDS | 40.0% | |
| TAACAACCTTGGAAGTAGCA+TGG | + | tig0020342:24791-24810 | Msa1380290:CDS | 40.0% | |
| AACAACCTTGGAAGTAGCAT+GGG | + | tig0020342:24792-24811 | Msa1380290:CDS | 40.0% | |
| ATACCATCACCTGATTCTAG+TGG | + | tig0020342:24903-24922 | Msa1380290:CDS | 40.0% | |
| TCAAAACCACCACTAGAATC+AGG | - | tig0020342:24915-24934 | None:intergenic | 40.0% | |
| TCATGGAGATACCAAATCTG+GGG | + | tig0020342:24976-24995 | Msa1380290:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | tig0020342:25038-25057 | Msa1380290:CDS | 40.0% | |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | tig0020342:25071-25090 | Msa1380290:CDS | 40.0% |
| TGACCTCCAAAATATCCTTG+AGG | - | tig0020342:25080-25099 | None:intergenic | 40.0% | |
| ACATTACAGGTAGCAACACA+GGG | + | tig0020342:25123-25142 | Msa1380290:CDS | 40.0% | |
| CTACCACATGCAAATCTGAA+TGG | + | tig0020342:25149-25168 | Msa1380290:CDS | 40.0% | |
| TTCCCATTCAGATTTGCATG+TGG | - | tig0020342:25155-25174 | None:intergenic | 40.0% | |
| GCCTCCTCAAGAAAATTTGA+AGG | + | tig0020342:25187-25206 | Msa1380290:CDS | 40.0% | |
| ! | ATGTGGTATTGAGGCATGTG+CGG | + | tig0020342:24262-24281 | Msa1380290:CDS | 45.0% |
| GGTGGAGGAGGATTATTAAG+AGG | - | tig0020342:24636-24655 | None:intergenic | 45.0% | |
| TAATAATCCTCCTCCACCGT+TGG | + | tig0020342:24638-24657 | Msa1380290:CDS | 45.0% | |
| !! | AAAGATATTGGTGCCAACGG+TGG | - | tig0020342:24654-24673 | None:intergenic | 45.0% |
| CCAAATCTGACAAGGGTTGT+TGG | - | tig0020342:24737-24756 | None:intergenic | 45.0% | |
| CCAACAACCCTTGTCAGATT+TGG | + | tig0020342:24734-24753 | Msa1380290:CDS | 45.0% | |
| TTCTCGCCCAAATCTGACAA+GGG | - | tig0020342:24744-24763 | None:intergenic | 45.0% | |
| TTTCTCGCCCAAATCTGACA+AGG | - | tig0020342:24745-24764 | None:intergenic | 45.0% | |
| ACAACCTTGGAAGTAGCATG+GGG | + | tig0020342:24793-24812 | Msa1380290:CDS | 45.0% | |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | tig0020342:24839-24858 | Msa1380290:CDS | 45.0% |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | tig0020342:25044-25063 | Msa1380290:CDS | 45.0% |
| CCTCCAAAATATCCTTGAGG+AGG | - | tig0020342:25077-25096 | None:intergenic | 45.0% | |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | tig0020342:25074-25093 | Msa1380290:CDS | 45.0% |
| GGAGGTCAAAGCAACTTTCA+AGG | + | tig0020342:25092-25111 | Msa1380290:CDS | 45.0% | |
| GACATTACAGGTAGCAACAC+AGG | + | tig0020342:25122-25141 | Msa1380290:CDS | 45.0% | |
| ! | ATGTGGTATTGAGGCATGTG+CGG | + | tig0020342:24262-24281 | Msa1380290:CDS | 45.0% |
| GGTGGAGGAGGATTATTAAG+AGG | - | tig0020342:24636-24655 | None:intergenic | 45.0% | |
| TAATAATCCTCCTCCACCGT+TGG | + | tig0020342:24638-24657 | Msa1380290:CDS | 45.0% | |
| !! | AAAGATATTGGTGCCAACGG+TGG | - | tig0020342:24654-24673 | None:intergenic | 45.0% |
| CCAAATCTGACAAGGGTTGT+TGG | - | tig0020342:24737-24756 | None:intergenic | 45.0% | |
| CCAACAACCCTTGTCAGATT+TGG | + | tig0020342:24734-24753 | Msa1380290:CDS | 45.0% | |
| TTCTCGCCCAAATCTGACAA+GGG | - | tig0020342:24744-24763 | None:intergenic | 45.0% | |
| TTTCTCGCCCAAATCTGACA+AGG | - | tig0020342:24745-24764 | None:intergenic | 45.0% | |
| ACAACCTTGGAAGTAGCATG+GGG | + | tig0020342:24793-24812 | Msa1380290:CDS | 45.0% | |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | tig0020342:24839-24858 | Msa1380290:CDS | 45.0% |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | tig0020342:25044-25063 | Msa1380290:CDS | 45.0% |
| CCTCCAAAATATCCTTGAGG+AGG | - | tig0020342:25077-25096 | None:intergenic | 45.0% | |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | tig0020342:25074-25093 | Msa1380290:CDS | 45.0% |
| GGAGGTCAAAGCAACTTTCA+AGG | + | tig0020342:25092-25111 | Msa1380290:CDS | 45.0% | |
| GACATTACAGGTAGCAACAC+AGG | + | tig0020342:25122-25141 | Msa1380290:CDS | 45.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | tig0020342:24273-24292 | Msa1380290:CDS | 50.0% | |
| GCAGGAGATGGCCATATTGA+TGG | - | tig0020342:24314-24333 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTGCAG+TGG | + | tig0020342:24316-24335 | Msa1380290:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACTGC+AGG | - | tig0020342:24332-24351 | None:intergenic | 50.0% | |
| !! | AACGGTGATGGGGTGCATAA+TGG | + | tig0020342:24684-24703 | Msa1380290:CDS | 50.0% |
| !! | ACGGTGATGGGGTGCATAAT+GGG | + | tig0020342:24685-24704 | Msa1380290:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+AGG | - | tig0020342:24800-24819 | None:intergenic | 50.0% |
| CCACTAAGATCTGCAAGTGG+AGG | - | tig0020342:24822-24841 | None:intergenic | 50.0% | |
| CCTCCACTTGCAGATCTTAG+TGG | + | tig0020342:24819-24838 | Msa1380290:CDS | 50.0% | |
| CCACCACTAAGATCTGCAAG+TGG | - | tig0020342:24825-24844 | None:intergenic | 50.0% | |
| CCACTTGCAGATCTTAGTGG+TGG | + | tig0020342:24822-24841 | Msa1380290:CDS | 50.0% | |
| CTTGCAGATCTTAGTGGTGG+TGG | + | tig0020342:24825-24844 | Msa1380290:CDS | 50.0% | |
| CCACCACTAGAATCAGGTGA+TGG | - | tig0020342:24909-24928 | None:intergenic | 50.0% | |
| CCATCACCTGATTCTAGTGG+TGG | + | tig0020342:24906-24925 | Msa1380290:CDS | 50.0% | |
| AACACACCTACACCACCACT+AGG | - | tig0020342:25053-25072 | None:intergenic | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | tig0020342:24273-24292 | Msa1380290:CDS | 50.0% | |
| GCAGGAGATGGCCATATTGA+TGG | - | tig0020342:24314-24333 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTGCAG+TGG | + | tig0020342:24316-24335 | Msa1380290:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACTGC+AGG | - | tig0020342:24332-24351 | None:intergenic | 50.0% | |
| !! | AACGGTGATGGGGTGCATAA+TGG | + | tig0020342:24684-24703 | Msa1380290:CDS | 50.0% |
| !! | ACGGTGATGGGGTGCATAAT+GGG | + | tig0020342:24685-24704 | Msa1380290:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+AGG | - | tig0020342:24800-24819 | None:intergenic | 50.0% |
| CCACTAAGATCTGCAAGTGG+AGG | - | tig0020342:24822-24841 | None:intergenic | 50.0% | |
| CCTCCACTTGCAGATCTTAG+TGG | + | tig0020342:24819-24838 | Msa1380290:CDS | 50.0% | |
| CCACCACTAAGATCTGCAAG+TGG | - | tig0020342:24825-24844 | None:intergenic | 50.0% | |
| CCACTTGCAGATCTTAGTGG+TGG | + | tig0020342:24822-24841 | Msa1380290:CDS | 50.0% | |
| CTTGCAGATCTTAGTGGTGG+TGG | + | tig0020342:24825-24844 | Msa1380290:CDS | 50.0% | |
| CCACCACTAGAATCAGGTGA+TGG | - | tig0020342:24909-24928 | None:intergenic | 50.0% | |
| CCATCACCTGATTCTAGTGG+TGG | + | tig0020342:24906-24925 | Msa1380290:CDS | 50.0% | |
| AACACACCTACACCACCACT+AGG | - | tig0020342:25053-25072 | None:intergenic | 50.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | tig0020342:24272-24291 | Msa1380290:CDS | 55.0% | |
| TCTTCAGCCACTGCAGGAGA+TGG | - | tig0020342:24326-24345 | None:intergenic | 55.0% | |
| !! | GATATTGGTGCCAACGGTGG+AGG | - | tig0020342:24651-24670 | None:intergenic | 55.0% |
| !! | CGGTGATGGGGTGCATAATG+GGG | + | tig0020342:24686-24705 | Msa1380290:CDS | 55.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | tig0020342:25062-25081 | Msa1380290:CDS | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | tig0020342:24272-24291 | Msa1380290:CDS | 55.0% | |
| TCTTCAGCCACTGCAGGAGA+TGG | - | tig0020342:24326-24345 | None:intergenic | 55.0% | |
| !! | GATATTGGTGCCAACGGTGG+AGG | - | tig0020342:24651-24670 | None:intergenic | 55.0% |
| !! | CGGTGATGGGGTGCATAATG+GGG | + | tig0020342:24686-24705 | Msa1380290:CDS | 55.0% |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | tig0020342:25062-25081 | Msa1380290:CDS | 55.0% | |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | tig0020342:24278-24297 | Msa1380290:CDS | 60.0% | |
| !! | ATTGGTGCCAACGGTGGAGG+AGG | - | tig0020342:24648-24667 | None:intergenic | 60.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | tig0020342:24278-24297 | Msa1380290:CDS | 60.0% | |
| !! | ATTGGTGCCAACGGTGGAGG+AGG | - | tig0020342:24648-24667 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020342 | gene | 24242 | 25217 | 24242 | ID=Msa1380290;Name=Msa1380290 |
| tig0020342 | mRNA | 24242 | 25217 | 24242 | ID=Msa1380290-mRNA-1;Parent=Msa1380290;Name=Msa1380290-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|301 |
| tig0020342 | exon | 24242 | 24357 | 24242 | ID=Msa1380290-mRNA-1:exon:7104;Parent=Msa1380290-mRNA-1 |
| tig0020342 | exon | 24428 | 25217 | 24428 | ID=Msa1380290-mRNA-1:exon:7105;Parent=Msa1380290-mRNA-1 |
| tig0020342 | CDS | 24242 | 24357 | 24242 | ID=Msa1380290-mRNA-1:cds;Parent=Msa1380290-mRNA-1 |
| tig0020342 | CDS | 24428 | 25217 | 24428 | ID=Msa1380290-mRNA-1:cds;Parent=Msa1380290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
