AlfalfaGEDB | Msa0000890

M. sativa cultivar zhongmu-4 / Msa0000890

KEGG: K06062
GO: GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010015 GO:0010321 GO:0010468 GO:0010484 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0061733 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000890	sp\|Q9AR19\|GCN5_ARATH	66.365	553	130	9	3	519	6	538	0.0	662

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0000890	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000890	Msa0436100	0.807020	6.198734e-50	-8.615850e-47
Msa0000890	Msa1149910	0.800979	1.117546e-48	-8.615850e-47
Msa0000890	Msa1373830	0.953297	3.740462e-111	-8.615850e-47
Msa0000890	Msa1433680	0.985174	9.421230e-163	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000890	MtrunA17_Chr7g0260581	88.158	532	30	3	1	519	1	512	0.0	861
Msa0000890	MtrunA17_Chr8g0363991	70.812	394	78	6	143	519	44	417	0.0	546

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000890	AT3G54610.1	66.365	553	130	9	3	519	6	538	0.0	662

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Find 157 sgRNAs with CRISPR-Local

Find 801 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTGAAGACATCCC+TGG	0.509554	1_1:+2290941	Msa0000890:CDS
AAATCAGTGTAAGGAAGCTT+TGG	0.395327	1_1:-2288461	None:intergenic
AACAGAACCACCACCAGCAC+CGG	0.436102	1_1:-2283558	None:intergenic
AACCCTAAGATGGAATCACA+CGG	0.703924	1_1:+2283113	Msa0000890:exon
AAGAGAGTAAAACCCTAAGA+TGG	0.544360	1_1:+2283103	Msa0000890:exon
AAGATGGAATCACACGGCGG+AGG	0.639882	1_1:+2283119	Msa0000890:exon
AAGCCGGACAATGTACTCCT+TGG	0.484190	1_1:-2285140	None:intergenic
AAGGAAGAAGGAGGGAACGG+TGG	0.624336	1_1:-2283248	None:intergenic
AATGTACTCCTTGGGCATAT+TGG	0.350870	1_1:-2285131	None:intergenic
AATGTCGGTAGAACCGCCTA+AGG	0.583109	1_1:-2293026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGTTGTTAGGAACTGTT+TGG	+	chr1_1:2283869-2283888	Msa0000890:intron	30.0%
AAGCGTTATGTATAACCTTA+CGG	-	chr1_1:2284077-2284096	None:intergenic	30.0%
TATTGTACAAGTGCTTATCA+TGG	-	chr1_1:2284101-2284120	None:intergenic	30.0%
AATAAGCTGTTTATCTAACC+AGG	+	chr1_1:2284117-2284136	Msa0000890:intron	30.0%
TTTATATAAAACTATGGGCC+TGG	-	chr1_1:2284138-2284157	None:intergenic	30.0%
TTTACATGTCTGTCAAATGA+TGG	+	chr1_1:2284246-2284265	Msa0000890:CDS	30.0%
TTTACATGATTGCTAGTAAG+CGG	+	chr1_1:2284354-2284373	Msa0000890:intron	30.0%
CGATTACATCTTTAAATTGC+TGG	-	chr1_1:2284443-2284462	None:intergenic	30.0%
AATTTGAAGAACCAATGTGA+TGG	+	chr1_1:2284564-2284583	Msa0000890:intron	30.0%
ATATATACTTCGCATCACAT+TGG	-	chr1_1:2284635-2284654	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	2283061	2294214	2283061	ID=Msa0000890;Name=Msa0000890
chr1_1	mRNA	2283061	2294214	2283061	ID=Msa0000890-mRNA-1;Parent=Msa0000890;Name=Msa0000890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=61\|0.83\|0.84\|1\|1\|1\|13\|114\|553
chr1_1	exon	2283061	2283679	2283061	ID=Msa0000890-mRNA-1:exon:481;Parent=Msa0000890-mRNA-1
chr1_1	exon	2284225	2284289	2284225	ID=Msa0000890-mRNA-1:exon:482;Parent=Msa0000890-mRNA-1
chr1_1	exon	2285093	2285173	2285093	ID=Msa0000890-mRNA-1:exon:483;Parent=Msa0000890-mRNA-1
chr1_1	exon	2286085	2286156	2286085	ID=Msa0000890-mRNA-1:exon:484;Parent=Msa0000890-mRNA-1
chr1_1	exon	2286764	2286932	2286764	ID=Msa0000890-mRNA-1:exon:485;Parent=Msa0000890-mRNA-1
chr1_1	exon	2288047	2288090	2288047	ID=Msa0000890-mRNA-1:exon:486;Parent=Msa0000890-mRNA-1
chr1_1	exon	2288412	2288511	2288412	ID=Msa0000890-mRNA-1:exon:487;Parent=Msa0000890-mRNA-1
chr1_1	exon	2290531	2290599	2290531	ID=Msa0000890-mRNA-1:exon:488;Parent=Msa0000890-mRNA-1
chr1_1	exon	2290920	2290968	2290920	ID=Msa0000890-mRNA-1:exon:489;Parent=Msa0000890-mRNA-1
chr1_1	exon	2292978	2293156	2292978	ID=Msa0000890-mRNA-1:exon:490;Parent=Msa0000890-mRNA-1
chr1_1	exon	2293291	2293384	2293291	ID=Msa0000890-mRNA-1:exon:491;Parent=Msa0000890-mRNA-1
chr1_1	exon	2293716	2293750	2293716	ID=Msa0000890-mRNA-1:exon:492;Parent=Msa0000890-mRNA-1
chr1_1	exon	2293954	2294214	2293954	ID=Msa0000890-mRNA-1:exon:493;Parent=Msa0000890-mRNA-1
chr1_1	five_prime_UTR	2283061	2283121	2283061	ID=Msa0000890-mRNA-1:five_prime_utr;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2283122	2283679	2283122	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2284225	2284289	2284225	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2285093	2285173	2285093	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2286085	2286156	2286085	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2286764	2286932	2286764	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2288047	2288090	2288047	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2288412	2288511	2288412	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2290531	2290599	2290531	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2290920	2290968	2290920	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2292978	2293156	2292978	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2293291	2293384	2293291	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2293716	2293750	2293716	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	CDS	2293954	2294100	2293954	ID=Msa0000890-mRNA-1:cds;Parent=Msa0000890-mRNA-1
chr1_1	three_prime_UTR	2294101	2294214	2294101	ID=Msa0000890-mRNA-1:three_prime_utr;Parent=Msa0000890-mRNA-1

Gene Sequence

>Msa0000890

ATGGAATCACACGGCGGAGGACCACTCCGTTCCCGGAGTTCCCAATCCGCTTCTCCATCCCACTCCGCCTCCGCTTCCGCCACCTCATCCATCCACAAACGCAAACTCGTCTCCGAAGATCACGCGCCACCGTTCCCTCCTTCTTCCTTATCCGCCGACACACGCGACGGCGCCTTAACCTCCAATGACGACCTCGAGAGCATCTCCGCTCGTGGAAACGACTCTGATTCTGATGACGATTCCGAAGATGCAGTTGTCGACGACGACGAAGACGAGTACGATAATGACAACGGTTCCTCCATGCGGAATTTCACTGCTGCTAGGCTTAACAATGCTCCTTCCGCTCCTCGCAATACGAAGATCAAAAGTGAAAATTCAACTGTTAAGATCGAACAATCTGATGGAGCTAAAGATGCTGGACCTCCTGTCACCGGTGCCGGTGCTGGTGGTGGTTCTGTTCCCGGCATTGTGGTTAAGGAGGATGCGACGAAGATATTCACTGAAAATTTGCAGACTAGTGGTGCTTATAGTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAAGAAACTGGAAAACTCAAATTTACATGTCTGTCAAATGATGGAGTTGACCAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATTGTCCGGCTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGTCCATATGCAAGCCAGAGGTTTGGTGAGATAGCCTTTTGTGCAATTACGGCTGATGAGCAAGTAAAAGGGTATGGTACCAGATTGATGAATCACTTAAAACAGTATGCTCGTGATGTAGATGGGCTGACACATTTTCTCACATATGCCGACAATAATGCTGTTGGATATTTCATCAAACAGGGATTTACTAAAGAGATTCACTTGGAGAAAGATCGATGGCATGGTTACATAAAGGATTATGATGGGGGAATTCTCATGGAATGTAAGATTGATCCAAAGCTTCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGACAGGCAATAGATGAAAAGATTAGAGAATTGTCTAATTGTCACATTGTTTATCCTGGAATCGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAGAAAATTATTGAAGACATCCCTGGTTTAAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGGTTCAGAACCTTAGGCGGTTCTACCGACATTGCTACAAATCTAAAACATTTAACTGCATTTATGCGTACACTTCTAAAGGCAAGTAACTTGATGTTGCACCTCGACTCAAATTTTCATTCATTGATCTTTTTCAGTGAAACGATGCATGATCACGCTGATGCTTGGCCATTCAAGGAACCCGTTGATGCACGAGATGTTCCTGATTATTATGAAATCATCAAAGATCCAATGGATCTGAAGACAATGAGTAAGAGGGTGGAGTCAGAGGCTAGAAGCACATTTTCAAAGCAAAGTGCATTCGATTCTCCAGTCCGGCAACAAAGTTCAGTAGGGACACTTCATCAGCCATGCATACTGTTATATTTAGATTATAGATATTGTATAATTATTCCCAATGATCAATCAGCCATGTAA

Protein sequence

>Msa0000890

MESHGGGPLRSRSSQSASPSHSASASATSSIHKRKLVSEDHAPPFPPSSLSADTRDGALTSNDDLESISARGNDSDSDDDSEDAVVDDDEDEYDNDNGSSMRNFTAARLNNAPSAPRNTKIKSENSTVKIEQSDGAKDAGPPVTGAGAGGGSVPGIVVKEDATKIFTENLQTSGAYSAREESLKKEEETGKLKFTCLSNDGVDQHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWHGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIEDIPGLREAGWTPDQWGHSRFRTLGGSTDIATNLKHLTAFMRTLLKASNLMLHLDSNFHSLIFFSETMHDHADAWPFKEPVDARDVPDYYEIIKDPMDLKTMSKRVESEARSTFSKQSAFDSPVRQQSSVGTLHQPCILLYLDYRYCIIIPNDQSAM*