AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001370 MtrunA17_Chr3g0139111 99.099 444 0 1 1 444 1 440 0.0 912
Msa0001370 MtrunA17_Chr8g0344491 64.578 415 123 8 33 444 34 427 0.0 528
Msa0001370 MtrunA17_Chr4g0070231 58.080 427 153 5 18 444 4 404 0.0 511
Msa0001370 MtrunA17_Chr2g0288251 32.803 314 179 8 55 355 49 343 9.32e-41 150
Msa0001370 MtrunA17_Chr4g0074711 30.769 312 187 8 54 355 64 356 3.24e-39 145
Msa0001370 MtrunA17_Chr4g0045221 33.663 303 172 10 63 346 115 407 7.72e-38 143
Msa0001370 MtrunA17_Chr1g0153871 30.479 292 174 6 64 346 97 368 1.25e-37 142
Msa0001370 MtrunA17_Chr1g0153871 25.532 188 114 4 57 224 183 364 1.39e-12 69.3
Msa0001370 MtrunA17_Chr3g0133651 31.000 300 177 6 57 346 86 365 1.30e-37 142
Msa0001370 MtrunA17_Chr2g0328791 31.270 307 193 8 63 357 14 314 8.10e-36 137
Msa0001370 MtrunA17_Chr3g0110211 33.333 168 105 3 65 227 26 191 1.29e-27 113
Msa0001370 MtrunA17_Chr1g0153181 26.510 298 177 8 48 336 15 279 4.23e-24 105
Msa0001370 MtrunA17_Chr1g0153181 25.685 292 190 7 56 338 112 385 1.44e-18 88.6
Msa0001370 MtrunA17_Chr7g0265341 26.645 304 179 8 50 345 59 326 1.71e-23 103
Msa0001370 MtrunA17_Chr7g0265341 25.914 301 191 8 56 345 150 429 5.24e-16 80.5
Msa0001370 MtrunA17_Chr6g0465751 25.275 273 161 5 65 330 26 262 9.17e-23 101
Msa0001370 MtrunA17_Chr6g0465751 29.121 182 109 4 65 227 201 381 2.72e-16 81.3
Msa0001370 MtrunA17_Chr4g0044541 26.429 280 165 8 65 336 35 281 9.18e-23 101
Msa0001370 MtrunA17_Chr4g0044541 27.077 325 200 9 39 345 88 393 1.52e-19 91.3
Msa0001370 MtrunA17_Chr6g0466501 24.908 273 162 5 65 330 26 262 9.68e-22 98.2
Msa0001370 MtrunA17_Chr6g0466501 29.121 182 109 4 65 227 201 381 1.01e-15 79.7
Msa0001370 MtrunA17_Chr3g0134141 26.786 280 164 7 65 336 25 271 8.21e-21 95.1
Msa0001370 MtrunA17_Chr3g0134141 25.967 181 115 4 65 227 204 383 2.31e-11 65.9
Msa0001370 MtrunA17_Chr1g0179701 24.126 286 178 5 60 338 58 311 6.21e-19 89.4
Msa0001370 MtrunA17_Chr1g0179701 26.578 301 183 10 59 345 141 417 3.51e-16 80.9
Msa0001370 MtrunA17_Chr1g0201151 25.000 292 192 6 56 338 110 383 2.47e-18 87.8
Msa0001370 MtrunA17_Chr1g0201151 25.271 277 166 9 65 333 31 274 1.61e-17 85.1
Msa0001370 MtrunA17_Chr6g0465631 25.753 299 180 9 56 338 7 279 4.98e-18 86.3
Msa0001370 MtrunA17_Chr6g0466451 25.753 299 180 9 56 338 7 279 5.03e-18 86.3
Msa0001370 MtrunA17_Chr6g0465691 24.832 298 195 8 56 345 23 299 9.91e-17 82.4
Msa0001370 MtrunA17_Chr0c09g0493511 28.571 182 110 4 65 227 119 299 2.54e-16 81.3
Msa0001370 MtrunA17_Chr0c09g0493511 24.161 298 197 8 56 345 23 299 2.75e-16 81.3
Msa0001370 MtrunA17_Chr3g0116631 29.651 172 109 2 66 225 111 282 3.89e-16 78.6
Msa0001370 MtrunA17_Chr4g0058151 28.824 170 110 3 66 225 124 292 6.42e-15 75.1
Msa0001370 MtrunA17_Chr7g0267571 25.352 213 129 5 151 354 111 302 3.66e-14 73.2
Msa0001370 MtrunA17_Chr7g0267571 25.281 178 115 2 66 225 111 288 9.34e-13 68.9
Msa0001370 MtrunA17_Chr1g0190211 41.892 74 43 0 149 222 132 205 4.00e-14 72.0
Msa0001370 MtrunA17_Chr3g0087481 27.624 181 117 2 59 225 55 235 1.00e-13 70.5
Msa0001370 MtrunA17_Chr3g0087481 25.258 194 118 3 151 340 62 232 1.81e-11 63.9
Msa0001370 MtrunA17_Chr1g0177101 23.558 208 145 2 59 252 103 310 3.64e-13 70.1
Msa0001370 MtrunA17_Chr1g0177101 26.289 194 116 4 151 340 110 280 4.90e-12 66.6
Msa0001370 MtrunA17_Chr1g0181111 27.807 187 108 2 66 225 86 272 5.85e-13 68.9
Msa0001370 MtrunA17_Chr7g0219021 37.975 79 49 0 151 229 42 120 3.53e-12 66.2
Msa0001370 MtrunA17_Chr3g0121631 42.667 75 42 1 151 225 38 111 6.11e-12 63.2
Msa0001370 MtrunA17_Chr4g0061451 37.662 77 48 0 151 227 44 120 8.08e-12 65.5
Msa0001370 MtrunA17_Chr1g0168601 30.400 125 85 1 103 225 105 229 8.13e-12 65.1
Msa0001370 MtrunA17_Chr3g0119311 37.037 81 51 0 151 231 38 118 7.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001370 AT1G17370.1 61.743 413 138 8 33 444 26 419 4.27e-180 509
Msa0001370 AT3G14100.1 62.260 416 134 9 33 444 31 427 6.05e-179 507
Msa0001370 AT1G17370.2 61.501 413 136 9 33 444 26 416 1.49e-177 503
Msa0001370 AT1G54080.1 59.529 425 144 7 24 444 26 426 7.83e-173 491
Msa0001370 AT1G54080.2 58.974 429 144 8 24 444 26 430 1.98e-170 485
Msa0001370 AT5G19350.1 29.795 292 193 6 63 346 23 310 4.99e-39 146
Msa0001370 AT4G27000.1 31.650 297 174 8 60 347 76 352 6.59e-39 145
Msa0001370 AT4G27000.1 27.442 215 109 6 150 357 81 255 2.04e-13 72.0
Msa0001370 AT5G19350.2 29.795 292 189 6 63 346 23 306 1.38e-38 144
Msa0001370 AT3G19130.1 32.095 296 181 8 63 346 107 394 6.13e-37 140
Msa0001370 AT1G49600.3 31.973 294 179 9 63 346 118 400 2.52e-36 139
Msa0001370 AT1G49600.2 31.973 294 179 9 63 346 118 400 2.52e-36 139
Msa0001370 AT1G49600.1 31.973 294 179 9 63 346 118 400 2.76e-36 139
Msa0001370 AT1G11650.2 29.630 297 181 6 60 347 58 335 2.26e-35 135
Msa0001370 AT5G54900.1 31.831 355 193 12 2 346 18 333 1.08e-34 133
Msa0001370 AT1G47490.1 29.831 295 177 8 64 346 101 377 4.63e-31 124
Msa0001370 AT1G11650.1 28.947 266 161 6 60 316 58 304 8.37e-29 115
Msa0001370 AT1G47500.1 29.831 295 177 9 64 346 103 379 1.91e-28 117
Msa0001370 AT2G18510.1 33.333 168 105 3 65 227 26 191 1.37e-27 113
Msa0001370 AT1G71770.1 26.471 272 164 6 65 330 60 301 5.59e-25 108
Msa0001370 AT1G71770.1 26.316 304 194 6 53 345 135 419 3.86e-20 93.6
Msa0001370 AT1G71770.2 26.471 272 164 6 65 330 60 301 5.59e-25 108
Msa0001370 AT1G71770.2 26.316 304 194 6 53 345 135 419 3.86e-20 93.6
Msa0001370 AT4G34110.1 27.372 274 158 6 65 330 37 277 7.49e-25 107
Msa0001370 AT4G34110.1 26.421 299 192 8 56 345 116 395 1.19e-19 92.0
Msa0001370 AT3G16380.1 29.433 282 171 6 65 338 113 374 2.01e-24 106
Msa0001370 AT3G16380.1 26.460 291 165 10 65 339 22 279 8.83e-17 83.2
Msa0001370 AT1G22760.1 27.206 272 162 8 65 330 50 291 2.44e-24 106
Msa0001370 AT1G22760.1 25.329 304 197 6 53 345 125 409 1.99e-18 88.6
Msa0001370 AT2G23350.1 30.742 283 168 8 65 338 135 398 3.72e-23 102
Msa0001370 AT2G23350.1 28.622 283 161 6 62 336 44 293 1.12e-22 101
Msa0001370 AT1G49760.1 27.007 274 161 5 65 331 46 287 8.87e-23 101
Msa0001370 AT1G49760.1 27.723 303 183 10 56 345 125 404 4.24e-22 99.8
Msa0001370 AT1G49760.2 27.007 274 161 5 65 331 46 287 8.87e-23 101
Msa0001370 AT1G49760.2 27.723 303 183 10 56 345 125 404 4.24e-22 99.8
Msa0001370 AT1G47490.2 31.429 175 108 5 64 226 101 275 2.20e-19 89.0
Msa0001370 AT2G36660.1 27.240 279 150 8 65 330 25 263 3.46e-19 90.5
Msa0001370 AT2G36660.1 22.569 288 197 6 65 345 113 381 1.03e-14 76.6
Msa0001370 AT1G34140.1 26.087 322 205 9 65 372 32 334 6.68e-19 89.0
Msa0001370 AT4G24770.1 31.579 171 108 2 66 227 152 322 8.86e-19 87.4
Msa0001370 AT4G24770.2 31.579 171 108 2 66 227 152 322 8.86e-19 87.4
Msa0001370 AT2G37220.1 31.088 193 105 2 61 225 88 280 1.66e-18 85.9
Msa0001370 AT1G47500.2 31.429 175 108 5 64 226 103 277 4.39e-18 85.1
Msa0001370 AT5G50250.1 30.178 169 109 2 66 225 115 283 4.51e-16 79.0
Msa0001370 AT3G52380.1 25.688 218 130 5 151 362 118 309 9.39e-16 78.6
Msa0001370 AT3G52380.1 25.556 180 116 2 66 227 118 297 4.86e-14 73.6
Msa0001370 AT1G60000.1 31.461 178 112 4 55 225 79 253 3.35e-15 75.9
Msa0001370 AT3G04500.1 43.243 74 42 0 149 222 137 210 1.85e-14 73.2
Msa0001370 AT4G13860.1 45.714 70 38 0 151 220 5 74 5.52e-14 67.8
Msa0001370 AT3G52150.2 26.804 194 117 5 151 340 78 250 7.78e-14 71.6
Msa0001370 AT3G52150.2 28.000 200 125 5 42 225 57 253 1.03e-13 71.2
Msa0001370 AT3G52150.1 26.804 194 117 5 151 340 78 250 7.78e-14 71.6
Msa0001370 AT3G52150.1 28.000 200 125 5 42 225 57 253 1.03e-13 71.2
Msa0001370 AT4G13850.2 45.205 73 40 0 151 223 37 109 2.66e-13 67.8
Msa0001370 AT4G13850.1 45.205 73 40 0 151 223 37 109 2.97e-13 67.8
Msa0001370 AT4G13850.4 45.333 75 41 0 151 225 37 111 5.85e-13 66.2
Msa0001370 AT3G23830.2 45.455 77 42 0 151 227 37 113 8.47e-13 65.9
Msa0001370 AT3G23830.1 45.455 77 42 0 151 227 37 113 8.47e-13 65.9
Msa0001370 AT4G13850.3 45.333 75 41 0 151 225 37 111 1.10e-12 65.9
Msa0001370 AT5G04280.1 42.105 76 44 0 150 225 8 83 1.36e-12 68.9
Msa0001370 AT4G39260.3 38.095 84 51 1 149 231 6 89 4.11e-12 62.8
Msa0001370 AT1G60650.2 38.095 84 52 0 150 233 13 96 6.97e-11 63.5
Msa0001370 AT1G60650.1 38.095 84 52 0 150 233 13 96 6.97e-11 63.5
Msa0001370 AT4G39260.2 37.662 77 48 0 149 225 6 82 9.12e-11 59.7

Find 156 sgRNAs with CRISPR-Local

Find 674 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTGTTTCTGGCCTTTC+AGG 0.085771 1_1:+3083460 Msa0001370:CDS
TTGAGTCAGGCTGCTGTTTC+TGG 0.090738 1_1:+3083451 Msa0001370:CDS
CAGAGTGCTGGCCCTCTTGC+TGG 0.169521 1_1:+3076789 Msa0001370:CDS
CTAACCTGTCATATCATTTA+TGG 0.187653 1_1:-3079444 None:intergenic
GTTCAGAGCGGCAAAGGTTT+TGG 0.251697 1_1:+3082610 Msa0001370:CDS
GATTGACATACATTGGAAAA+TGG 0.257034 1_1:+3074898 Msa0001370:five_prime_UTR
TACATTGGAAAATGGGGATT+TGG 0.268774 1_1:+3074906 Msa0001370:five_prime_UTR
CATATCATTTATGGCACTTT+GGG 0.283299 1_1:-3079435 None:intergenic
GCAAATTTCCACACACCATT+TGG 0.296275 1_1:+3074969 Msa0001370:five_prime_UTR
CCAGTCGCGTTGTTGCCTTC+TGG 0.303794 1_1:+3083632 Msa0001370:three_prime_UTR
TAGTGAGTACAACAGCATTT+TGG 0.310047 1_1:-3079661 None:intergenic
TTACTGTTACAGTCCTCTTA+TGG 0.325857 1_1:+3078230 Msa0001370:intron
TCATGCGCCGTGCAGGTAAA+TGG 0.340073 1_1:+3079558 Msa0001370:intron
TTTGATTTGTGCAGTGTTCA+TGG 0.341611 1_1:+3083287 Msa0001370:intron
CATTGTCAATTCCATGCATT+GGG 0.344475 1_1:+3082562 Msa0001370:CDS
ACTGGTCGCTCAAAAGGATA+TGG 0.356544 1_1:+3079134 Msa0001370:CDS
TTGAAGTGGTTGTTGGTGAT+TGG 0.368909 1_1:-3075023 None:intergenic
GTCAAGCACTAAAGGTGAAC+TGG 0.369112 1_1:+3078620 Msa0001370:CDS
GTGTTGTAATTTATGTTGTT+TGG 0.375186 1_1:+3083739 Msa0001370:three_prime_UTR
CAAATTTCCACACACCATTT+GGG 0.376222 1_1:+3074970 Msa0001370:five_prime_UTR
AATGCTGTTGTACTCACTAA+TGG 0.376531 1_1:+3079665 Msa0001370:CDS
CAGGTAAATGGCTGGGAAAT+AGG 0.380298 1_1:+3079570 Msa0001370:intron
GCGGCAGCGGCGAGCATGCC+AGG 0.380318 1_1:-3075319 None:intergenic
ACATTGGAAAATGGGGATTT+GGG 0.388221 1_1:+3074907 Msa0001370:five_prime_UTR
GCAGTAGGAAGTATTTGATA+TGG 0.388435 1_1:-3083370 None:intergenic
TTATTATCTGCAGTGATGCT+AGG 0.388780 1_1:+3079093 Msa0001370:intron
GTACTCACTAATGGATCTTC+AGG 0.389743 1_1:+3079674 Msa0001370:CDS
GCGCCAGCTTGCCTTGAGTC+AGG 0.397350 1_1:+3083438 Msa0001370:CDS
CAGCCTGACTCAAGGCAAGC+TGG 0.400016 1_1:-3083441 None:intergenic
TCATATCATTTATGGCACTT+TGG 0.401250 1_1:-3079436 None:intergenic
TGGCCTAGCTCCTGCTTCAA+TGG 0.403772 1_1:+3083513 Msa0001370:CDS
CTATACTGCCGCTGAGTTGT+TGG 0.405851 1_1:+3083408 Msa0001370:CDS
TGAAGTGGTTGTTGGTGATT+GGG 0.413053 1_1:-3075022 None:intergenic
ATTTGATATGGTTGTGCAGC+AGG 0.414607 1_1:-3083358 None:intergenic
TGTTTCTTTCCGTGATCATC+AGG 0.420333 1_1:+3079160 Msa0001370:CDS
AGAGTGCTGGCCCTCTTGCT+GGG 0.424228 1_1:+3076790 Msa0001370:CDS
ATAGGCAAATAAGATGCAAT+TGG 0.425248 1_1:+3079588 Msa0001370:CDS
CCCGTTGGTTCGTTCCCAAA+TGG 0.428258 1_1:-3074984 None:intergenic
CAAGCTCTTCTTCAAATGTC+TGG 0.430252 1_1:+3083484 Msa0001370:CDS
CACAAAACTGGTCGCTCAAA+AGG 0.430477 1_1:+3079128 Msa0001370:CDS
CCATTGTCAATTCCATGCAT+TGG 0.438850 1_1:+3082561 Msa0001370:CDS
TTCATAGTCTTCCCACGAAC+CGG 0.445671 1_1:-3082694 None:intergenic
GGCCTAGCTCCTGCTTCAAT+GGG 0.448821 1_1:+3083514 Msa0001370:CDS
GGTAGCAAACCAACTCCTCC+TGG 0.452864 1_1:+3083310 Msa0001370:CDS
ATTGACATACATTGGAAAAT+GGG 0.455792 1_1:+3074899 Msa0001370:five_prime_UTR
TTGATTTGTGCAGTGTTCAT+GGG 0.458284 1_1:+3083288 Msa0001370:intron
TTATGTTGTTTGGTCTAAGA+GGG 0.463548 1_1:+3083749 Msa0001370:three_prime_UTR
TGTGCAGCAGGAGGAGGTAA+TGG 0.463607 1_1:-3083346 None:intergenic
CGCCGCTGCCGCCATGACTC+AGG 0.466522 1_1:+3075330 Msa0001370:CDS
GCGCCGTGCAGGTAAATGGC+TGG 0.469479 1_1:+3079562 Msa0001370:intron
TTTATGTTGTTTGGTCTAAG+AGG 0.472202 1_1:+3083748 Msa0001370:three_prime_UTR
GCATCTCAAGCCATGTATGA+TGG 0.473914 1_1:+3083550 Msa0001370:CDS
TCACGACACGAAAGGAAAAC+AGG 0.475355 1_1:-3083920 None:intergenic
GTTATGTGGGATCACAAAAC+TGG 0.476499 1_1:+3079116 Msa0001370:CDS
GGCAGATTTCCACTTGGTAC+AGG 0.476764 1_1:-3076433 None:intergenic
CAGATATGGTCAAGCACTAA+AGG 0.481421 1_1:+3078612 Msa0001370:intron
GATTAGATTGAAGTGGTTGT+TGG 0.483030 1_1:-3075030 None:intergenic
AACCTTTGCCGCTCTGAACT+CGG 0.485345 1_1:-3082606 None:intergenic
GAGTTTATACCCATTGAAGC+AGG 0.490298 1_1:-3083523 None:intergenic
CCATTTGGGAACGAACCAAC+GGG 0.492372 1_1:+3074984 Msa0001370:five_prime_UTR
ATGGCCATTCAGATGGCTAA+TGG 0.493306 1_1:+3082667 Msa0001370:CDS
GGGCATATGCTAATAGCAGC+AGG 0.497780 1_1:+3078641 Msa0001370:CDS
CACATAATAACTTACATCAT+GGG 0.500585 1_1:-3081687 None:intergenic
ATTGAATAACCTGGATGGGA+TGG 0.501221 1_1:-3075054 None:intergenic
TATCAAATACTTCCTACTGC+AGG 0.501942 1_1:+3083373 Msa0001370:CDS
CAAGCTCATACGAAAAGAAA+AGG 0.505952 1_1:+3076815 Msa0001370:CDS
TAGGCAAATAAGATGCAATT+GGG 0.506393 1_1:+3079589 Msa0001370:CDS
AAAGTTGCATCAGTAACCTC+TGG 0.509996 1_1:-3078828 None:intergenic
TATTATCTGCAGTGATGCTA+GGG 0.513071 1_1:+3079094 Msa0001370:intron
CGCCGTGCAGGTAAATGGCT+GGG 0.514723 1_1:+3079563 Msa0001370:intron
AGAGAGAGATTGACATACAT+TGG 0.516147 1_1:+3074891 Msa0001370:five_prime_UTR
CAGCGGCGAGCATGCCAGGA+TGG 0.517214 1_1:-3075315 None:intergenic
CCAGAAGGCAACAACGCGAC+TGG 0.517663 1_1:-3083632 None:intergenic
GAAGCTGTCCCAGGAGGAGT+TGG 0.517974 1_1:-3083319 None:intergenic
GTCCGAGTTCAGAGCGGCAA+AGG 0.522688 1_1:+3082604 Msa0001370:CDS
AATGGATTTGAAGCTGTCCC+AGG 0.523245 1_1:-3083328 None:intergenic
ACATAAACTGTGGTGTATGA+AGG 0.527956 1_1:-3081653 None:intergenic
GTAGTCCACAAAACCATAAG+AGG 0.529746 1_1:-3078243 None:intergenic
ATCTAATCTCCATCCCATCC+AGG 0.529776 1_1:+3075045 Msa0001370:five_prime_UTR
AGATGCAATTGGGCAACTAA+AGG 0.529820 1_1:+3079599 Msa0001370:CDS
TACCTGAGTCATGGCGGCAG+CGG 0.531709 1_1:-3075332 None:intergenic
GTCGCGTTGTTGCCTTCTGG+TGG 0.532371 1_1:+3083635 Msa0001370:three_prime_UTR
CCAAGTGGAAATCTGCCTCC+TGG 0.532408 1_1:+3076439 Msa0001370:CDS
AGAGTGGGAGTGGATGGAGA+TGG 0.532733 1_1:+3074845 None:intergenic
GCGCTGCAGATGCTCGATCA+TGG 0.535729 1_1:-3078265 None:intergenic
GTGGATGGAGATGGATTGAG+AGG 0.539757 1_1:+3074854 None:intergenic
ACCATTTGGGAACGAACCAA+CGG 0.539831 1_1:+3074983 Msa0001370:five_prime_UTR
TCTAAGAGGGTTTAATGACT+CGG 0.540217 1_1:+3083762 Msa0001370:three_prime_UTR
GCAGTGATGCTAGGGTTATG+TGG 0.542201 1_1:+3079102 Msa0001370:intron
TATGGTTGTGCAGCAGGAGG+AGG 0.545725 1_1:-3083352 None:intergenic
CTTGCAATAATGACATTACA+TGG 0.546222 1_1:+3078287 Msa0001370:CDS
ATGTACTATCGTTAACGTGT+TGG 0.547750 1_1:+3083604 Msa0001370:exon
TCATACACCACAGTTTATGT+TGG 0.550873 1_1:+3081656 Msa0001370:CDS
TGTTGGTGATTTGAGTCCAG+AGG 0.552793 1_1:+3078812 Msa0001370:CDS
AGCAGCAGGGAGGATACCTC+AGG 0.556360 1_1:+3078655 Msa0001370:CDS
ATGAGCTTGCACCCAGCAAG+AGG 0.559508 1_1:-3076801 None:intergenic
CTTCAAATGTCTGGACAGCA+TGG 0.559553 1_1:+3083493 Msa0001370:CDS
GGAAAATTGAATAACCTGGA+TGG 0.559620 1_1:-3075059 None:intergenic
AGCAGCAATGGCCATTCAGA+TGG 0.559699 1_1:+3082660 Msa0001370:CDS
TACTCACGAGGAAGCAGCAA+TGG 0.566016 1_1:+3082648 Msa0001370:CDS
ATCAAATACTTCCTACTGCA+GGG 0.566020 1_1:+3083374 Msa0001370:CDS
CTAAGAGGGTTTAATGACTC+GGG 0.568338 1_1:+3083763 Msa0001370:three_prime_UTR
GCCATGTATGATGGATATGC+TGG 0.570497 1_1:+3083559 Msa0001370:CDS
ACTCAGCGGCAGTATAGCCT+TGG 0.571742 1_1:-3083402 None:intergenic
CAGTGATGCTAGGGTTATGT+GGG 0.574161 1_1:+3079103 Msa0001370:intron
TACCCATTGAAGCAGGAGCT+AGG 0.575152 1_1:-3083516 None:intergenic
GAAAATTGAATAACCTGGAT+GGG 0.576085 1_1:-3075058 None:intergenic
TCAGATGGCTAATGGAAGAC+CGG 0.578621 1_1:+3082675 Msa0001370:CDS
AATTGGGCAACTAAAGGAGC+TGG 0.579883 1_1:+3079605 Msa0001370:CDS
TATTGCTGCTCGACGCCCGT+TGG 0.579985 1_1:-3074999 None:intergenic
AGTGCCATAAATGATATGAC+AGG 0.580583 1_1:+3079440 Msa0001370:CDS
GGATGGAGATTAGATTGAAG+TGG 0.585432 1_1:-3075037 None:intergenic
CAACAGATGTATCACCATCC+TGG 0.588864 1_1:+3075301 Msa0001370:CDS
GAAGAAGAGCTTGTCCTGAA+AGG 0.590043 1_1:-3083474 None:intergenic
AATCCAACACTCACACACTA+CGG 0.592155 1_1:-3076480 None:intergenic
TCTTCCATTAGCCATCTGAA+TGG 0.592211 1_1:-3082671 None:intergenic
TTGACATACATTGGAAAATG+GGG 0.593617 1_1:+3074900 Msa0001370:five_prime_UTR
CATGCAGAAGCATCAAAACC+AGG 0.594532 1_1:-3076457 None:intergenic
CCTTGGTTCATCCCTGCAGT+AGG 0.595601 1_1:-3083385 None:intergenic
GTAGCAAACCAACTCCTCCT+GGG 0.595678 1_1:+3083311 Msa0001370:CDS
CAATAATGACATTACATGGA+CGG 0.597000 1_1:+3078291 Msa0001370:CDS
GTGAGACTATACGAGAAGAA+AGG 0.598318 1_1:+3074931 Msa0001370:five_prime_UTR
ACCAGCATATCCATCATACA+TGG 0.598383 1_1:-3083560 None:intergenic
GCTAATGGAAGACCGGTTCG+TGG 0.602235 1_1:+3082682 Msa0001370:CDS
TTGAGTGCGTACCTGAGTCA+TGG 0.608383 1_1:-3075341 None:intergenic
CAACGCAACTTGCCACCAGA+AGG 0.611006 1_1:-3083647 None:intergenic
AGAAACAGCAGCCTGACTCA+AGG 0.611320 1_1:-3083449 None:intergenic
CCAATGCATGGAATTGACAA+TGG 0.612478 1_1:-3082561 None:intergenic
CCAGGAGGCAGATTTCCACT+TGG 0.614545 1_1:-3076439 None:intergenic
TCAAGCACTAAAGGTGAACT+GGG 0.615031 1_1:+3078621 Msa0001370:CDS
TGATATGGTTGTGCAGCAGG+AGG 0.615436 1_1:-3083355 None:intergenic
ATTAAATTAATATGCAACAG+AGG 0.616865 1_1:+3075206 Msa0001370:exon
GGTTCGTGGGAAGACTATGA+AGG 0.622745 1_1:+3082696 Msa0001370:CDS
TGAGCTTGCACCCAGCAAGA+GGG 0.626119 1_1:-3076800 None:intergenic
CTAATGGAAGACCGGTTCGT+GGG 0.628842 1_1:+3082683 Msa0001370:CDS
TAAACAATACCTGATGATCA+CGG 0.630743 1_1:-3079169 None:intergenic
ACATAATAACTTACATCATG+GGG 0.631409 1_1:-3081686 None:intergenic
GTTCGTTCCCAAATGGTGTG+TGG 0.635806 1_1:-3074977 None:intergenic
TGATTTGTGCAGTGTTCATG+GGG 0.642305 1_1:+3083289 Msa0001370:intron
TGGGCAACTAAAGGAGCTGG+TGG 0.644576 1_1:+3079608 Msa0001370:CDS
TTATCTTGTCACGACACGAA+AGG 0.644760 1_1:-3083928 None:intergenic
ATTGTCAATTCCATGCATTG+GGG 0.655280 1_1:+3082563 Msa0001370:CDS
AATAACTTACATCATGGGGA+AGG 0.662148 1_1:-3081682 None:intergenic
GGCATATGCTAATAGCAGCA+GGG 0.664924 1_1:+3078642 Msa0001370:CDS
TTGTCAATTCCATGCATTGG+GGG 0.671288 1_1:+3082564 Msa0001370:CDS
TAGATGGAGCCTGTACCAAG+TGG 0.679006 1_1:+3076424 Msa0001370:intron
CTGATAAGCCAACAACTCAG+CGG 0.687286 1_1:-3083416 None:intergenic
AAGGTTGCCAACATAAACTG+TGG 0.696175 1_1:-3081663 None:intergenic
GGATTTGAAGCTGTCCCAGG+AGG 0.710431 1_1:-3083325 None:intergenic
CCTACTGCAGGGATGAACCA+AGG 0.714250 1_1:+3083385 Msa0001370:CDS
AGGTCAAGATAACAGCAATG+AGG 0.720049 1_1:+3081613 Msa0001370:CDS
AGTGCGTACCTGAGTCATGG+CGG 0.723312 1_1:-3075338 None:intergenic
GCAGAAGCATCAAAACCAGG+AGG 0.745439 1_1:-3076454 None:intergenic
GAGGAGGTCCGAGTTCAGAG+CGG 0.760138 1_1:+3082598 Msa0001370:CDS
TGTCAGATACAATACTCACG+AGG 0.768476 1_1:+3082636 Msa0001370:CDS
ATATGCTAATAGCAGCAGGG+AGG 0.768819 1_1:+3078645 Msa0001370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTACAGTTAATTTTTT+AGG + chr1_1:3075577-3075596 Msa0001370:intron 10.0%
!! AAAAAAAAAAAAAAACTAGA+TGG - chr1_1:3075687-3075706 None:intergenic 10.0%
!! AAACAAAAATAATATGAAAT+TGG - chr1_1:3075774-3075793 None:intergenic 10.0%
!! ATAACAAATATTAAAAATTG+GGG - chr1_1:3076391-3076410 None:intergenic 10.0%
!! ATACTAATTAAAATATATGA+AGG + chr1_1:3079920-3079939 Msa0001370:intron 10.0%
!!! TAAACTTCTAATATTATTTT+TGG + chr1_1:3081385-3081404 Msa0001370:intron 10.0%
!!! AACAATGATTTTTCAATAAA+AGG - chr1_1:3075902-3075921 None:intergenic 15.0%
!! TTACAATTTGTATTATTAGT+CGG + chr1_1:3076232-3076251 Msa0001370:intron 15.0%
!!! TAAATAATGATGCTTTTAAT+TGG + chr1_1:3076613-3076632 Msa0001370:intron 15.0%
!!! TCTTTTTAAAATGTTTGTTT+TGG + chr1_1:3077012-3077031 Msa0001370:intron 15.0%
!!! AATATAATTCCATTTTTAGT+TGG - chr1_1:3077139-3077158 None:intergenic 15.0%
!! GAAAATAGTTTATAAAGATT+AGG - chr1_1:3077399-3077418 None:intergenic 15.0%
!! AAGGATTAATAAATAGATTT+GGG - chr1_1:3079729-3079748 None:intergenic 15.0%
!! AGAATATGTATTATAGATAA+AGG + chr1_1:3079811-3079830 Msa0001370:intron 15.0%
!!! TAGACTAGTTTTTTTTAATT+GGG - chr1_1:3081023-3081042 None:intergenic 15.0%
!!! ATAGACTAGTTTTTTTTAAT+TGG - chr1_1:3081024-3081043 None:intergenic 15.0%
!! AAATAGAAAAGTTAAAGTAA+GGG + chr1_1:3081085-3081104 Msa0001370:intron 15.0%
!! AAAGATACTTTCATTAAATA+TGG + chr1_1:3081114-3081133 Msa0001370:intron 15.0%
!! AAGATACTTTCATTAAATAT+GGG + chr1_1:3081115-3081134 Msa0001370:intron 15.0%
!! TTTGTCAAAATGTAAAAAAA+AGG - chr1_1:3081899-3081918 None:intergenic 15.0%
!!! CCTTTTTTTTTTTTTTATTG+CGG + chr1_1:3083684-3083703 Msa0001370:three_prime_UTR 15.0%
!! ATTAAATTAATATGCAACAG+AGG + chr1_1:3075206-3075225 Msa0001370:exon 20.0%
!! CAAACATTGAGTATATATTA+TGG - chr1_1:3075385-3075404 None:intergenic 20.0%
!! TGAATACAAAATAAAAAGCA+TGG - chr1_1:3075558-3075577 None:intergenic 20.0%
!!! GAAAAATCATTGTTAGTTTT+TGG + chr1_1:3075908-3075927 Msa0001370:intron 20.0%
!!! TTCTTGATTAAAGAAACTTT+TGG - chr1_1:3076092-3076111 None:intergenic 20.0%
!!! TATTTTGGAAATTTTGTAGA+TGG + chr1_1:3076408-3076427 Msa0001370:intron 20.0%
!!! CCATATTTTGTGAAAAATTT+AGG - chr1_1:3076963-3076982 None:intergenic 20.0%
!!! CCTAAATTTTTCACAAAATA+TGG + chr1_1:3076960-3076979 Msa0001370:intron 20.0%
!! AAAAATTCATTACAGTGAAA+AGG - chr1_1:3077266-3077285 None:intergenic 20.0%
!! AATAGTTTATAAAGATTAGG+TGG - chr1_1:3077396-3077415 None:intergenic 20.0%
!!! CTAATATCATGTTAGATTTT+TGG + chr1_1:3077515-3077534 Msa0001370:intron 20.0%
!!! ACTGACATATTTTTCTTTAT+TGG - chr1_1:3077729-3077748 None:intergenic 20.0%
!!! TGTTCAATTTGTGTTTATTT+TGG + chr1_1:3078329-3078348 Msa0001370:intron 20.0%
!! CTGCATAATTAAAACAATAT+CGG - chr1_1:3078516-3078535 None:intergenic 20.0%
!!! GATTTTGAACTAGAAATTAA+AGG - chr1_1:3078771-3078790 None:intergenic 20.0%
!!! ATAGGTATATTCTTTTTTGA+TGG + chr1_1:3078939-3078958 Msa0001370:intron 20.0%
!!! GTTTCAATGATTTTTTTGTA+AGG - chr1_1:3079335-3079354 None:intergenic 20.0%
!! CAAGGATTAATAAATAGATT+TGG - chr1_1:3079730-3079749 None:intergenic 20.0%
!! CCAACATAATAGTTTAAATA+TGG - chr1_1:3079862-3079881 None:intergenic 20.0%
!! CCATATTTAAACTATTATGT+TGG + chr1_1:3079859-3079878 Msa0001370:intron 20.0%
!! CATTACCTTTATATAGTAAA+TGG + chr1_1:3079985-3080004 Msa0001370:intron 20.0%
!! GAAATAGAAAAGTTAAAGTA+AGG + chr1_1:3081084-3081103 Msa0001370:intron 20.0%
!! TTTATAGAGTTATTGAATGA+TGG + chr1_1:3081456-3081475 Msa0001370:intron 20.0%
!!! TTAAGCTTTAAACATAGTTT+TGG + chr1_1:3081736-3081755 Msa0001370:intron 20.0%
!!! TGTTTTTTCTATCAATGTTT+TGG + chr1_1:3081794-3081813 Msa0001370:intron 20.0%
!! TTTGTAAATAAAGTCAGAAA+AGG - chr1_1:3082370-3082389 None:intergenic 20.0%
!!! ATATCAAAAGTTATCACTTT+TGG + chr1_1:3082983-3083002 Msa0001370:intron 20.0%
!!! TATCAAAAGTTATCACTTTT+GGG + chr1_1:3082984-3083003 Msa0001370:intron 20.0%
!!! AATTCCATTTCAAGTAAAAT+TGG + chr1_1:3083061-3083080 Msa0001370:intron 20.0%
!!! ATTCCATTTCAAGTAAAATT+GGG + chr1_1:3083062-3083081 Msa0001370:intron 20.0%
!! AAAAAAAAAAAGGAAAGAGA+AGG - chr1_1:3083677-3083696 None:intergenic 20.0%
!! CCGCAATAAAAAAAAAAAAA+AGG - chr1_1:3083687-3083706 None:intergenic 20.0%
! ATTGACATACATTGGAAAAT+GGG + chr1_1:3074899-3074918 Msa0001370:five_prime_UTR 25.0%
!! AGTATATATTATGGTGGAAA+TGG - chr1_1:3075376-3075395 None:intergenic 25.0%
! ACATTGAGTATATATTATGG+TGG - chr1_1:3075382-3075401 None:intergenic 25.0%
! ATATATCAATGGTTAAGACT+GGG - chr1_1:3075609-3075628 None:intergenic 25.0%
! TAACCATTGATATATCAGTA+AGG + chr1_1:3075614-3075633 Msa0001370:intron 25.0%
! ATTCCTTACTGATATATCAA+TGG - chr1_1:3075620-3075639 None:intergenic 25.0%
! AATAATATGAAATTGGACAG+CGG - chr1_1:3075767-3075786 None:intergenic 25.0%
!! TGTTACAGAATTATTTTCGT+TGG + chr1_1:3076167-3076186 Msa0001370:intron 25.0%
!! TATTTTCGTTGGTCATTATA+TGG + chr1_1:3076178-3076197 Msa0001370:intron 25.0%
! AAACTGTTTACACAATTGAT+TGG + chr1_1:3076208-3076227 Msa0001370:intron 25.0%
!!! TCGGATAATTTGTTTTTTAG+AGG + chr1_1:3076251-3076270 Msa0001370:intron 25.0%
!! TTTTACTATCAACGAAAGAT+TGG + chr1_1:3076295-3076314 Msa0001370:intron 25.0%
!! AAAAAGAAATTTGCTTCTAC+AGG - chr1_1:3076594-3076613 None:intergenic 25.0%
!!! AGACAAGGGTATTTAAAAAT+AGG - chr1_1:3076922-3076941 None:intergenic 25.0%
!! CTTATAGTTGTTTAAGACAA+GGG - chr1_1:3076936-3076955 None:intergenic 25.0%
!! TTTCACTCAAATTTTCTTTC+TGG + chr1_1:3077038-3077057 Msa0001370:intron 25.0%
!! TTCACTCAAATTTTCTTTCT+GGG + chr1_1:3077039-3077058 Msa0001370:intron 25.0%
! TGAATTAGATTAATAGGGAT+AGG - chr1_1:3077172-3077191 None:intergenic 25.0%
! GGTCTTGAATTAGATTAATA+GGG - chr1_1:3077177-3077196 None:intergenic 25.0%
! AGGTCTTGAATTAGATTAAT+AGG - chr1_1:3077178-3077197 None:intergenic 25.0%
!! ATTTTTCATTGAATCCAAGA+CGG + chr1_1:3077280-3077299 Msa0001370:intron 25.0%
! GATTCAAAATTCTAAGCATT+GGG - chr1_1:3077337-3077356 None:intergenic 25.0%
! TGATTCAAAATTCTAAGCAT+TGG - chr1_1:3077338-3077357 None:intergenic 25.0%
! TGATATTAGAGTATGTTGAT+AGG - chr1_1:3077504-3077523 None:intergenic 25.0%
!! TCTAGCATTGAAAAGAAATA+AGG - chr1_1:3077621-3077640 None:intergenic 25.0%
! AAGAAAAATATGTCAGTACT+TGG + chr1_1:3077732-3077751 Msa0001370:intron 25.0%
!! GTTATAACTTGTAAGTCAAT+TGG + chr1_1:3078046-3078065 Msa0001370:intron 25.0%
! AGAAACCAAAAAGTAAAGAA+CGG - chr1_1:3078178-3078197 None:intergenic 25.0%
!!! ATTTCTAGTTCAAAATCATC+AGG + chr1_1:3078774-3078793 Msa0001370:intron 25.0%
!!! TTTCTAGTTCAAAATCATCA+GGG + chr1_1:3078775-3078794 Msa0001370:intron 25.0%
! CAAAAAAATGTAATGAAAGG+GGG - chr1_1:3078909-3078928 None:intergenic 25.0%
! CCAAAAAAATGTAATGAAAG+GGG - chr1_1:3078910-3078929 None:intergenic 25.0%
! CCCAAAAAAATGTAATGAAA+GGG - chr1_1:3078911-3078930 None:intergenic 25.0%
!!! CCCTTTCATTACATTTTTTT+GGG + chr1_1:3078908-3078927 Msa0001370:intron 25.0%
! ACCCAAAAAAATGTAATGAA+AGG - chr1_1:3078912-3078931 None:intergenic 25.0%
! TTGAAGAAAGATAGATGATA+TGG + chr1_1:3078994-3079013 Msa0001370:intron 25.0%
! TGAAGAAAGATAGATGATAT+GGG + chr1_1:3078995-3079014 Msa0001370:intron 25.0%
!!! AATTTTGAGAGCAAAGATAA+TGG - chr1_1:3079266-3079285 None:intergenic 25.0%
! ATTATTAGTACAGTTCATAC+TGG - chr1_1:3079367-3079386 None:intergenic 25.0%
! TCTTTATGCAATTAATATGC+AGG + chr1_1:3079409-3079428 Msa0001370:intron 25.0%
! ATCCTTGAAAATATAGATGA+AGG + chr1_1:3079743-3079762 Msa0001370:intron 25.0%
! ATTTAAACTATTATGTTGGC+TGG + chr1_1:3079863-3079882 Msa0001370:intron 25.0%
! TTGCTTGTAATAATTCATTC+CGG - chr1_1:3080065-3080084 None:intergenic 25.0%
! AGATATAGTTGTTGTGAATT+CGG + chr1_1:3080110-3080129 Msa0001370:intron 25.0%
!!! TTCTTTATCTTGTTGTTCTT+TGG - chr1_1:3080273-3080292 None:intergenic 25.0%
!!! AAACAATTTGTTAACACCTT+GGG - chr1_1:3080521-3080540 None:intergenic 25.0%
!! TCTAGAATATAACCCTAAAA+GGG + chr1_1:3080547-3080566 Msa0001370:intron 25.0%
! CATTTATACATGTTTAATCC+TGG - chr1_1:3080882-3080901 None:intergenic 25.0%
! ACCTTTATTAGTGTGTTTAA+AGG + chr1_1:3081261-3081280 Msa0001370:intron 25.0%
! CCTTTATTAGTGTGTTTAAA+GGG + chr1_1:3081262-3081281 Msa0001370:intron 25.0%
!!! TTTGTTATGTGTTTTACAGA+TGG + chr1_1:3081590-3081609 Msa0001370:intron 25.0%
! ACATAATAACTTACATCATG+GGG - chr1_1:3081689-3081708 None:intergenic 25.0%
! CACATAATAACTTACATCAT+GGG - chr1_1:3081690-3081709 None:intergenic 25.0%
! CATGATGTAAGTTATTATGT+GGG + chr1_1:3081689-3081708 Msa0001370:intron 25.0%
!!! GCAAAAAAGGCTTATTTTTT+TGG - chr1_1:3082030-3082049 None:intergenic 25.0%
!!! CAAAATATTTTTTGGTGTTG+CGG + chr1_1:3082386-3082405 Msa0001370:intron 25.0%
! ACAGTTGTAAGTTATATATC+CGG - chr1_1:3082510-3082529 None:intergenic 25.0%
!!! TCTTTTAAAAGTACTTTACC+AGG - chr1_1:3082809-3082828 None:intergenic 25.0%
!!! GGTAAAGTACTTTTAAAAGA+AGG + chr1_1:3082809-3082828 Msa0001370:intron 25.0%
!! ATCTAGTTTCAGGTAAAATA+GGG - chr1_1:3082855-3082874 None:intergenic 25.0%
!! AATCTAGTTTCAGGTAAAAT+AGG - chr1_1:3082856-3082875 None:intergenic 25.0%
! TTCTGTTCATATACGAAATT+GGG - chr1_1:3082962-3082981 None:intergenic 25.0%
! TTTCTGTTCATATACGAAAT+TGG - chr1_1:3082963-3082982 None:intergenic 25.0%
!!! TTTTTTTTATTGCGGTATTG+TGG + chr1_1:3083692-3083711 Msa0001370:three_prime_UTR 25.0%
! GTGTTGTAATTTATGTTGTT+TGG + chr1_1:3083739-3083758 Msa0001370:three_prime_UTR 25.0%
GATTGACATACATTGGAAAA+TGG + chr1_1:3074898-3074917 Msa0001370:five_prime_UTR 30.0%
TTGACATACATTGGAAAATG+GGG + chr1_1:3074900-3074919 Msa0001370:five_prime_UTR 30.0%
GAAAATTGAATAACCTGGAT+GGG - chr1_1:3075061-3075080 None:intergenic 30.0%
TGAAAATGAAAATCGCGAAT+CGG - chr1_1:3075100-3075119 None:intergenic 30.0%
! TTGATTTCTGAAGAAGAAAG+AGG - chr1_1:3075171-3075190 None:intergenic 30.0%
!!! AGCTCAAATTGATTTTTAGC+TGG + chr1_1:3075424-3075443 Msa0001370:intron 30.0%
GATATATCAATGGTTAAGAC+TGG - chr1_1:3075610-3075629 None:intergenic 30.0%
AGTAATCTATTGTTATCGTC+TGG + chr1_1:3075715-3075734 Msa0001370:intron 30.0%
GCATAGAATATGCTAGTAAA+TGG - chr1_1:3075828-3075847 None:intergenic 30.0%
!! AAATGTTGAGTTGTTTCTGT+TGG - chr1_1:3076068-3076087 None:intergenic 30.0%
! CACAAATGGTTATTTCACAA+TGG + chr1_1:3076138-3076157 Msa0001370:intron 30.0%
AAGGAAAATTCAACATGCTT+GGG - chr1_1:3076554-3076573 None:intergenic 30.0%
AAAGGAAAATTCAACATGCT+TGG - chr1_1:3076555-3076574 None:intergenic 30.0%
! AGCATGTTGAATTTTCCTTT+TGG + chr1_1:3076555-3076574 Msa0001370:intron 30.0%
GGTAGAAATTATGTACCAAA+AGG - chr1_1:3076573-3076592 None:intergenic 30.0%
ATTGTGAGAGATAAGTTTGA+TGG + chr1_1:3076642-3076661 Msa0001370:intron 30.0%
GGATTAATTAGGTATCAAAG+TGG - chr1_1:3076696-3076715 None:intergenic 30.0%
CACAAAACTTCGGATTAATT+AGG - chr1_1:3076707-3076726 None:intergenic 30.0%
! TAACTGAAAGCACAAAACTT+CGG - chr1_1:3076717-3076736 None:intergenic 30.0%
! TTTTGTGCTTTCAGTTATGT+AGG + chr1_1:3076720-3076739 Msa0001370:intron 30.0%
! CCTTATAGTTGTTTAAGACA+AGG - chr1_1:3076937-3076956 None:intergenic 30.0%
CCTTGTCTTAAACAACTATA+AGG + chr1_1:3076934-3076953 Msa0001370:intron 30.0%
! TCACTCAAATTTTCTTTCTG+GGG + chr1_1:3077040-3077059 Msa0001370:intron 30.0%
TTGTAAGGACAAGTTATACA+AGG - chr1_1:3077069-3077088 None:intergenic 30.0%
!!! TTCCATTTTTAGTTGGAGAA+GGG - chr1_1:3077132-3077151 None:intergenic 30.0%
!!! ATTCCATTTTTAGTTGGAGA+AGG - chr1_1:3077133-3077152 None:intergenic 30.0%
TTAGATTAATAGGGATAGGT+CGG - chr1_1:3077168-3077187 None:intergenic 30.0%
GGAATACATCATTCTTGAAA+TGG - chr1_1:3077245-3077264 None:intergenic 30.0%
! TGCTATAAATTTTTCCGTCT+TGG - chr1_1:3077297-3077316 None:intergenic 30.0%
! ACCTAATCTCTTTTCAATGA+GGG + chr1_1:3077421-3077440 Msa0001370:intron 30.0%
ATAGTATACTAGGCATAAGA+GGG - chr1_1:3077468-3077487 None:intergenic 30.0%
AATAGTATACTAGGCATAAG+AGG - chr1_1:3077469-3077488 None:intergenic 30.0%
CTTATGCCTAGTATACTATT+TGG + chr1_1:3077469-3077488 Msa0001370:intron 30.0%
! TTCTTTTCAATGCTAGACTT+TGG + chr1_1:3077624-3077643 Msa0001370:intron 30.0%
TCTACAAGATAAAGATCTCA+AGG - chr1_1:3077662-3077681 None:intergenic 30.0%
TTGAGATCTTTATCTTGTAG+AGG + chr1_1:3077661-3077680 Msa0001370:intron 30.0%
! TACTTGGCACAAAATTTGTT+TGG + chr1_1:3077748-3077767 Msa0001370:intron 30.0%
ATAGTGTAAATCCGTAAGAT+AGG + chr1_1:3077919-3077938 Msa0001370:intron 30.0%
AGAAAATATAGCTGCTAAGA+AGG + chr1_1:3077995-3078014 Msa0001370:intron 30.0%
GAAACCAAAAAGTAAAGAAC+GGG - chr1_1:3078177-3078196 None:intergenic 30.0%
!!! ATGTGTTTTTTTTCCGTTGT+TGG + chr1_1:3078202-3078221 Msa0001370:intron 30.0%
AACAGTAATTTCACCAACAA+CGG - chr1_1:3078218-3078237 None:intergenic 30.0%
CTTGCAATAATGACATTACA+TGG + chr1_1:3078287-3078306 Msa0001370:CDS 30.0%
CAATAATGACATTACATGGA+CGG + chr1_1:3078291-3078310 Msa0001370:CDS 30.0%
GAATGCAAATATCATCCTAA+TGG + chr1_1:3078446-3078465 Msa0001370:intron 30.0%
TTAATTATGCAGTCTTGACA+AGG + chr1_1:3078524-3078543 Msa0001370:intron 30.0%
TAATTATGCAGTCTTGACAA+GGG + chr1_1:3078525-3078544 Msa0001370:intron 30.0%
TGTGATGTTGCTATGTATAA+AGG - chr1_1:3078563-3078582 None:intergenic 30.0%
!!! GTTTTTTCCATTTGCAGATA+TGG + chr1_1:3078598-3078617 Msa0001370:intron 30.0%
!! AATAGATGGGTTGCATTTAA+AGG - chr1_1:3078684-3078703 None:intergenic 30.0%
CATCAAAACCAACAATAGAT+GGG - chr1_1:3078697-3078716 None:intergenic 30.0%
TCATCAAAACCAACAATAGA+TGG - chr1_1:3078698-3078717 None:intergenic 30.0%
!! GTTTTGATGATTTTGCTTCT+CGG + chr1_1:3078708-3078727 Msa0001370:intron 30.0%
!! TTTTGATGATTTTGCTTCTC+GGG + chr1_1:3078709-3078728 Msa0001370:intron 30.0%
!!! CCCCTTTCATTACATTTTTT+TGG + chr1_1:3078907-3078926 Msa0001370:intron 30.0%
!!! ATTACATTTTTTTGGGTCAC+TGG + chr1_1:3078915-3078934 Msa0001370:intron 30.0%
AATATTGTAGTCCTTGTTAG+TGG + chr1_1:3078964-3078983 Msa0001370:intron 30.0%
GAAGAAAGATAGATGATATG+GGG + chr1_1:3078996-3079015 Msa0001370:intron 30.0%
AAGAAAGATAGATGATATGG+GGG + chr1_1:3078997-3079016 Msa0001370:intron 30.0%
!!! TTGCAAGACATTTTGGTTTT+TGG + chr1_1:3079047-3079066 Msa0001370:intron 30.0%
TAAACAATACCTGATGATCA+CGG - chr1_1:3079172-3079191 None:intergenic 30.0%
! AGCAAAGATAATGGTCTTTA+AGG - chr1_1:3079257-3079276 None:intergenic 30.0%
CTAATTCATGTAGCTAAACA+TGG - chr1_1:3079295-3079314 None:intergenic 30.0%
!! GTACTAATAATTTGCTGAAC+TGG + chr1_1:3079376-3079395 Msa0001370:intron 30.0%
CATATCATTTATGGCACTTT+GGG - chr1_1:3079438-3079457 None:intergenic 30.0%
TCATATCATTTATGGCACTT+TGG - chr1_1:3079439-3079458 None:intergenic 30.0%
CTAACCTGTCATATCATTTA+TGG - chr1_1:3079447-3079466 None:intergenic 30.0%
! AGAATAGAAGCATAACAACA+GGG - chr1_1:3079505-3079524 None:intergenic 30.0%
! AAGAATAGAAGCATAACAAC+AGG - chr1_1:3079506-3079525 None:intergenic 30.0%
ATAGGCAAATAAGATGCAAT+TGG + chr1_1:3079588-3079607 Msa0001370:CDS 30.0%
TAGGCAAATAAGATGCAATT+GGG + chr1_1:3079589-3079608 Msa0001370:CDS 30.0%
! TGCCTTCATCTATATTTTCA+AGG - chr1_1:3079748-3079767 None:intergenic 30.0%
TGGAAATTGCTAGAAATTCA+TGG + chr1_1:3079883-3079902 Msa0001370:intron 30.0%
CCACTCCATTTACTATATAA+AGG - chr1_1:3079993-3080012 None:intergenic 30.0%
CCTTTATATAGTAAATGGAG+TGG + chr1_1:3079990-3080009 Msa0001370:intron 30.0%
GATATAGTTGTTGTGAATTC+GGG + chr1_1:3080111-3080130 Msa0001370:intron 30.0%
!! GAAACAATTTGTTAACACCT+TGG - chr1_1:3080522-3080541 None:intergenic 30.0%
!! TAGGGTTATATTCTAGAGTT+AGG - chr1_1:3080544-3080563 None:intergenic 30.0%
!! CTCTAGAATATAACCCTAAA+AGG + chr1_1:3080546-3080565 Msa0001370:intron 30.0%
!! AATTTTTGACCCATTTGTTG+GGG - chr1_1:3080825-3080844 None:intergenic 30.0%
! CAATTTTTGACCCATTTGTT+GGG - chr1_1:3080826-3080845 None:intergenic 30.0%
TTAGTCATGGAGGATAATTT+AGG - chr1_1:3081049-3081068 None:intergenic 30.0%
TATCCTCCATGACTAAAAAA+TGG + chr1_1:3081053-3081072 Msa0001370:intron 30.0%
!!! ATGACTCCATTTTTTAGTCA+TGG - chr1_1:3081062-3081081 None:intergenic 30.0%
CCCTTTAAACACACTAATAA+AGG - chr1_1:3081265-3081284 None:intergenic 30.0%
TGTTGTCTATATTAACTGAC+TGG - chr1_1:3081305-3081324 None:intergenic 30.0%
TAGAGTTATTGAATGATGGT+TGG + chr1_1:3081460-3081479 Msa0001370:intron 30.0%
TGAAGTCATAGAGCTTAATA+GGG - chr1_1:3081494-3081513 None:intergenic 30.0%
ATGAAGTCATAGAGCTTAAT+AGG - chr1_1:3081495-3081514 None:intergenic 30.0%
CCACATAATAACTTACATCA+TGG - chr1_1:3081691-3081710 None:intergenic 30.0%
CCATGATGTAAGTTATTATG+TGG + chr1_1:3081688-3081707 Msa0001370:intron 30.0%
TGTAAGTTATTATGTGGGAT+TGG + chr1_1:3081694-3081713 Msa0001370:intron 30.0%
TAAGAAAGCTGAAACATCAT+TGG - chr1_1:3081941-3081960 None:intergenic 30.0%
ATGAACAGAGTTATATGTAG+TGG + chr1_1:3082054-3082073 Msa0001370:intron 30.0%
! TTGTTTAGTTCACAATCTTC+CGG + chr1_1:3082488-3082507 Msa0001370:intron 30.0%
TTACCAGGCACTATTATATA+GGG - chr1_1:3082794-3082813 None:intergenic 30.0%
TTTACCAGGCACTATTATAT+AGG - chr1_1:3082795-3082814 None:intergenic 30.0%
! AGAAGGCTTAAACAGATTTT+TGG + chr1_1:3082826-3082845 Msa0001370:intron 30.0%
!!! AAACCTGGATTTTGAAATGA+CGG - chr1_1:3082884-3082903 None:intergenic 30.0%
! TCATTTCAAAATCCAGGTTT+TGG + chr1_1:3082884-3082903 Msa0001370:intron 30.0%
TCTGTTCATATACGAAATTG+GGG - chr1_1:3082961-3082980 None:intergenic 30.0%
! TCTCCCAATTTTACTTGAAA+TGG - chr1_1:3083068-3083087 None:intergenic 30.0%
ACAGAAAATAGAGGTTTGTA+TGG - chr1_1:3083168-3083187 None:intergenic 30.0%
AAAATAAGCAAAGTGGAAAG+GGG - chr1_1:3083235-3083254 None:intergenic 30.0%
GAAAATAAGCAAAGTGGAAA+GGG - chr1_1:3083236-3083255 None:intergenic 30.0%
!! CTTTTGGAAAATAAGCAAAG+TGG - chr1_1:3083242-3083261 None:intergenic 30.0%
! TTATATTCACAGAGAGCTTT+TGG - chr1_1:3083258-3083277 None:intergenic 30.0%
! TTTATGTTGTTTGGTCTAAG+AGG + chr1_1:3083748-3083767 Msa0001370:three_prime_UTR 30.0%
! TTATGTTGTTTGGTCTAAGA+GGG + chr1_1:3083749-3083768 Msa0001370:three_prime_UTR 30.0%
AGAGAGAGATTGACATACAT+TGG + chr1_1:3074891-3074910 Msa0001370:five_prime_UTR 35.0%
TACATTGGAAAATGGGGATT+TGG + chr1_1:3074906-3074925 Msa0001370:five_prime_UTR 35.0%
ACATTGGAAAATGGGGATTT+GGG + chr1_1:3074907-3074926 Msa0001370:five_prime_UTR 35.0%
CAAATTTCCACACACCATTT+GGG + chr1_1:3074970-3074989 Msa0001370:five_prime_UTR 35.0%
GATTAGATTGAAGTGGTTGT+TGG - chr1_1:3075033-3075052 None:intergenic 35.0%
GGAAAATTGAATAACCTGGA+TGG - chr1_1:3075062-3075081 None:intergenic 35.0%
CATCATTCTATGTGTGTGTT+TGG - chr1_1:3075503-3075522 None:intergenic 35.0%
CAAACACACACATAGAATGA+TGG + chr1_1:3075501-3075520 Msa0001370:intron 35.0%
! TATCGTCTGGAGTAATTTGA+TGG + chr1_1:3075728-3075747 Msa0001370:intron 35.0%
TTATATTACCAACAGCTGTG+TGG + chr1_1:3075792-3075811 Msa0001370:intron 35.0%
ATGCATCACCTATAAAACTG+AGG + chr1_1:3075844-3075863 Msa0001370:intron 35.0%
TGCATCACCTATAAAACTGA+GGG + chr1_1:3075845-3075864 Msa0001370:intron 35.0%
!! AATCCATCCCTCAGTTTTAT+AGG - chr1_1:3075855-3075874 None:intergenic 35.0%
!! ATGGATTTTAGAGGACGAAA+TGG + chr1_1:3075868-3075887 Msa0001370:intron 35.0%
GTACACACAAAACACACAAA+TGG + chr1_1:3076124-3076143 Msa0001370:intron 35.0%
TTCCTTCTACGATTCTATCT+AGG + chr1_1:3076331-3076350 Msa0001370:intron 35.0%
TCCTTCTACGATTCTATCTA+GGG + chr1_1:3076332-3076351 Msa0001370:intron 35.0%
GAACAAACACAACAAAACTG+AGG - chr1_1:3076532-3076551 None:intergenic 35.0%
CAAGCTCATACGAAAAGAAA+AGG + chr1_1:3076815-3076834 Msa0001370:CDS 35.0%
CATTCATCAGCAAAGAACAT+TGG - chr1_1:3076859-3076878 None:intergenic 35.0%
!!! TCCATTTTTAGTTGGAGAAG+GGG - chr1_1:3077131-3077150 None:intergenic 35.0%
TTCAAGACCTAATCAGTAGA+TGG + chr1_1:3077188-3077207 Msa0001370:intron 35.0%
!! TCAAAATTCTAAGCATTGGG+AGG - chr1_1:3077334-3077353 None:intergenic 35.0%
ATTAGGTGGAAGCAAATGTA+GGG - chr1_1:3077382-3077401 None:intergenic 35.0%
! GACCTAATCTCTTTTCAATG+AGG + chr1_1:3077420-3077439 Msa0001370:intron 35.0%
TCCCTCATTGAAAAGAGATT+AGG - chr1_1:3077425-3077444 None:intergenic 35.0%
ATTGGGCCAAATAGTATACT+AGG - chr1_1:3077478-3077497 None:intergenic 35.0%
! AGTATGTTGATAGGCAGATT+GGG - chr1_1:3077495-3077514 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_1:3077545-3077564 Msa0001370:intron 35.0%
CTTTATCTTGTAGAGGTGAT+AGG + chr1_1:3077668-3077687 Msa0001370:intron 35.0%
! GCACAAAATTTGTTTGGTGA+AGG + chr1_1:3077754-3077773 Msa0001370:intron 35.0%
! CAAAATTTGTTTGGTGAAGG+TGG + chr1_1:3077757-3077776 Msa0001370:intron 35.0%
GGTCAGTAATTTAGACAACA+AGG - chr1_1:3077873-3077892 None:intergenic 35.0%
CTGATATCATGACAGATAAG+TGG - chr1_1:3077894-3077913 None:intergenic 35.0%
CTTACGGATTTACACTATCA+AGG - chr1_1:3077917-3077936 None:intergenic 35.0%
AGTTAGAGAAGCCTATCTTA+CGG - chr1_1:3077933-3077952 None:intergenic 35.0%
TAAGATAGGCTTCTCTAACT+TGG + chr1_1:3077933-3077952 Msa0001370:intron 35.0%
ACAAGTTATAACACACAAGC+AGG - chr1_1:3078038-3078057 None:intergenic 35.0%
AAAGAACGGGAGTAGAAATA+AGG - chr1_1:3078164-3078183 None:intergenic 35.0%
!! TACTCCCGTTCTTTACTTTT+TGG + chr1_1:3078170-3078189 Msa0001370:intron 35.0%
TTACTGTTACAGTCCTCTTA+TGG + chr1_1:3078230-3078249 Msa0001370:intron 35.0%
! TCATCTATCTCTAGAAAAGC+TGG - chr1_1:3078403-3078422 None:intergenic 35.0%
TTGCATTTAAAGGTAACCTG+AGG - chr1_1:3078674-3078693 None:intergenic 35.0%
AAATGCAACCCATCTATTGT+TGG + chr1_1:3078686-3078705 Msa0001370:intron 35.0%
!! TTTGATGATTTTGCTTCTCG+GGG + chr1_1:3078710-3078729 Msa0001370:intron 35.0%
!!! TTTTTTTGGGTCACTGGAAT+AGG + chr1_1:3078921-3078940 Msa0001370:intron 35.0%
GCAGATAATAAGAGAGAAGA+TGG - chr1_1:3079084-3079103 None:intergenic 35.0%
TTATTATCTGCAGTGATGCT+AGG + chr1_1:3079093-3079112 Msa0001370:intron 35.0%
TATTATCTGCAGTGATGCTA+GGG + chr1_1:3079094-3079113 Msa0001370:intron 35.0%
TTCTGTACGCTAGAATTTAC+AGG + chr1_1:3079192-3079211 Msa0001370:intron 35.0%
AGTGCCATAAATGATATGAC+AGG + chr1_1:3079440-3079459 Msa0001370:CDS 35.0%
! GAATAGAAGCATAACAACAG+GGG - chr1_1:3079504-3079523 None:intergenic 35.0%
! TAGTGAGTACAACAGCATTT+TGG - chr1_1:3079664-3079683 None:intergenic 35.0%
AATGCTGTTGTACTCACTAA+TGG + chr1_1:3079665-3079684 Msa0001370:CDS 35.0%
GGGATCACAGATATTTAGAA+AGG - chr1_1:3079709-3079728 None:intergenic 35.0%
GAAGGATATCATGCGAAATT+TGG + chr1_1:3079938-3079957 Msa0001370:intron 35.0%
! GAGAGAGTATGCATAAAAAC+TGG - chr1_1:3080043-3080062 None:intergenic 35.0%
! GTTTTTATGCATACTCTCTC+CGG + chr1_1:3080043-3080062 Msa0001370:intron 35.0%
ACCAGTAAAACTTAGATGTG+TGG + chr1_1:3080147-3080166 Msa0001370:intron 35.0%
! TCCACACATCTAAGTTTTAC+TGG - chr1_1:3080151-3080170 None:intergenic 35.0%
ATGTGTGGAGCAAATATCAA+TGG + chr1_1:3080162-3080181 Msa0001370:intron 35.0%
TATTGTTGCTAGTGACTGTT+TGG - chr1_1:3080198-3080217 None:intergenic 35.0%
AAACTGGGTGAACAAATTCT+TGG - chr1_1:3080319-3080338 None:intergenic 35.0%
! AAGAATTTGTTCACCCAGTT+TGG + chr1_1:3080318-3080337 Msa0001370:intron 35.0%
GCAAAAAAAAAACTGTGACG+TGG - chr1_1:3080381-3080400 None:intergenic 35.0%
TGAATCTTGGAACCAAAAGA+GGG - chr1_1:3080716-3080735 None:intergenic 35.0%
GTCTTTGAGTGAGATTCAAA+GGG - chr1_1:3080747-3080766 None:intergenic 35.0%
! GCAATTTTTGACCCATTTGT+TGG - chr1_1:3080827-3080846 None:intergenic 35.0%
CTCTAATCATGGCATGATTT+GGG - chr1_1:3080912-3080931 None:intergenic 35.0%
TGAACTCACATCCAAAATTG+TGG - chr1_1:3080944-3080963 None:intergenic 35.0%
!!! ACTCCATTTTTTAGTCATGG+AGG - chr1_1:3081059-3081078 None:intergenic 35.0%
! TATCCAAAAGAAGTGATGGA+CGG - chr1_1:3081420-3081439 None:intergenic 35.0%
ACAGTATCCAAAAGAAGTGA+TGG - chr1_1:3081424-3081443 None:intergenic 35.0%
! TCTTTTGCACTTCTGTAAAC+AGG + chr1_1:3081528-3081547 Msa0001370:intron 35.0%
! TGTAAACAGGCTGAGAATTT+TGG + chr1_1:3081541-3081560 Msa0001370:intron 35.0%
! GTAAACAGGCTGAGAATTTT+GGG + chr1_1:3081542-3081561 Msa0001370:intron 35.0%
! GTTATGTGTTTTACAGATGG+AGG + chr1_1:3081593-3081612 Msa0001370:intron 35.0%
! GTGTATGAAGGATTGTTTTC+AGG - chr1_1:3081644-3081663 None:intergenic 35.0%
ACATAAACTGTGGTGTATGA+AGG - chr1_1:3081656-3081675 None:intergenic 35.0%
TCATACACCACAGTTTATGT+TGG + chr1_1:3081656-3081675 Msa0001370:CDS 35.0%
AATAACTTACATCATGGGGA+AGG - chr1_1:3081685-3081704 None:intergenic 35.0%
!! GTTATTATGTGGGATTGGTT+TGG + chr1_1:3081699-3081718 Msa0001370:intron 35.0%
TCATTTGACCATGCATTGAA+TGG - chr1_1:3081821-3081840 None:intergenic 35.0%
TTCAATGCATGGTCAAATGA+TGG + chr1_1:3081821-3081840 Msa0001370:intron 35.0%
TCAATGCATGGTCAAATGAT+GGG + chr1_1:3081822-3081841 Msa0001370:intron 35.0%
!!! AACTTGATTGCTTGTTTTGC+TGG + chr1_1:3081852-3081871 Msa0001370:intron 35.0%
TCTGTTCATCAGAGCAAAAA+AGG - chr1_1:3082043-3082062 None:intergenic 35.0%
ATGGATAAGGGTAAAAGAGA+CGG - chr1_1:3082097-3082116 None:intergenic 35.0%
! TCTCTTTTACCCTTATCCAT+TGG + chr1_1:3082097-3082116 Msa0001370:intron 35.0%
AAAACAAGGCCAATGGATAA+GGG - chr1_1:3082109-3082128 None:intergenic 35.0%
ATCCAGCCTTGATTGAAAAA+AGG + chr1_1:3082131-3082150 Msa0001370:intron 35.0%
TGGATTTCAATACAAACCAC+TGG - chr1_1:3082161-3082180 None:intergenic 35.0%
ATTGTATACTGCATCATACG+AGG - chr1_1:3082323-3082342 None:intergenic 35.0%
! AAAGGTTATTAGTCTCAGCA+TGG - chr1_1:3082352-3082371 None:intergenic 35.0%
CTCATCAAAGAGTAGATACA+AGG - chr1_1:3082429-3082448 None:intergenic 35.0%
CATTGTCAATTCCATGCATT+GGG + chr1_1:3082562-3082581 Msa0001370:CDS 35.0%
ATTGTCAATTCCATGCATTG+GGG + chr1_1:3082563-3082582 Msa0001370:CDS 35.0%
!! ATTACTTGCTGTTTCTGTGT+CGG + chr1_1:3082756-3082775 Msa0001370:intron 35.0%
! ACGGACTAAAATCTAGTTTC+AGG - chr1_1:3082865-3082884 None:intergenic 35.0%
TTGCAACAATATGTGGAACT+GGG - chr1_1:3082913-3082932 None:intergenic 35.0%
ATTGCAACAATATGTGGAAC+TGG - chr1_1:3082914-3082933 None:intergenic 35.0%
TCCACATATTGTTGCAATCT+TGG + chr1_1:3082916-3082935 Msa0001370:intron 35.0%
ACCAAGATTGCAACAATATG+TGG - chr1_1:3082920-3082939 None:intergenic 35.0%
GAAATTGGGGCTAAAAACTA+TGG - chr1_1:3082948-3082967 None:intergenic 35.0%
! GTTACATTCCTGTTCACTTT+TGG - chr1_1:3083091-3083110 None:intergenic 35.0%
ATCTGTGATGACTCAATTAC+AGG + chr1_1:3083205-3083224 Msa0001370:intron 35.0%
GGAAAATAAGCAAAGTGGAA+AGG - chr1_1:3083237-3083256 None:intergenic 35.0%
!! TTTGATTTGTGCAGTGTTCA+TGG + chr1_1:3083287-3083306 Msa0001370:intron 35.0%
!! TTGATTTGTGCAGTGTTCAT+GGG + chr1_1:3083288-3083307 Msa0001370:intron 35.0%
!! GCAGTAGGAAGTATTTGATA+TGG - chr1_1:3083373-3083392 None:intergenic 35.0%
TATCAAATACTTCCTACTGC+AGG + chr1_1:3083373-3083392 Msa0001370:CDS 35.0%
ATCAAATACTTCCTACTGCA+GGG + chr1_1:3083374-3083393 Msa0001370:CDS 35.0%
ATGTACTATCGTTAACGTGT+TGG + chr1_1:3083604-3083623 Msa0001370:exon 35.0%
TCTAAGAGGGTTTAATGACT+CGG + chr1_1:3083762-3083781 Msa0001370:three_prime_UTR 35.0%
GTGAGACTATACGAGAAGAA+AGG + chr1_1:3074931-3074950 Msa0001370:five_prime_UTR 40.0%
GCAAATTTCCACACACCATT+TGG + chr1_1:3074969-3074988 Msa0001370:five_prime_UTR 40.0%
!! TGAAGTGGTTGTTGGTGATT+GGG - chr1_1:3075025-3075044 None:intergenic 40.0%
!! TTGAAGTGGTTGTTGGTGAT+TGG - chr1_1:3075026-3075045 None:intergenic 40.0%
GGATGGAGATTAGATTGAAG+TGG - chr1_1:3075040-3075059 None:intergenic 40.0%
ATTGAATAACCTGGATGGGA+TGG - chr1_1:3075057-3075076 None:intergenic 40.0%
TGGGGGAAAATTGAATAACC+TGG - chr1_1:3075066-3075085 None:intergenic 40.0%
AATCGGTGAATGAAATCTGG+GGG - chr1_1:3075083-3075102 None:intergenic 40.0%
GAATCGGTGAATGAAATCTG+GGG - chr1_1:3075084-3075103 None:intergenic 40.0%
CGAATCGGTGAATGAAATCT+GGG - chr1_1:3075085-3075104 None:intergenic 40.0%
TTGAGCTCTTCTTCTCAAAG+AGG - chr1_1:3075411-3075430 None:intergenic 40.0%
TGAAATTACCACACAGCTGT+TGG - chr1_1:3075803-3075822 None:intergenic 40.0%
TCACCTATAAAACTGAGGGA+TGG + chr1_1:3075849-3075868 Msa0001370:intron 40.0%
!! AACTGAGGGATGGATTTTAG+AGG + chr1_1:3075859-3075878 Msa0001370:intron 40.0%
!! CATAACTTGCCAGCACTTTT+AGG + chr1_1:3076024-3076043 Msa0001370:intron 40.0%
! ATGTGAAGACCTAAAAGTGC+TGG - chr1_1:3076036-3076055 None:intergenic 40.0%
ACCCTAGATAGAATCGTAGA+AGG - chr1_1:3076336-3076355 None:intergenic 40.0%
TTGGGGAAAAGATAAGATCC+TGG - chr1_1:3076374-3076393 None:intergenic 40.0%
AATCCAACACTCACACACTA+CGG - chr1_1:3076483-3076502 None:intergenic 40.0%
GTGGAAAACTACACTACTTC+TGG - chr1_1:3076677-3076696 None:intergenic 40.0%
!!! CCTTTCAAGCTGGTTTTGTA+AGG - chr1_1:3077084-3077103 None:intergenic 40.0%
CCTTACAAAACCAGCTTGAA+AGG + chr1_1:3077081-3077100 Msa0001370:intron 40.0%
TGTACACAAACCTTTCAAGC+TGG - chr1_1:3077094-3077113 None:intergenic 40.0%
GCTTGAAAGGTTTGTGTACA+AGG + chr1_1:3077094-3077113 Msa0001370:intron 40.0%
ACCCCTTCTCCAACTAAAAA+TGG + chr1_1:3077127-3077146 Msa0001370:intron 40.0%
ATTAATAGGGATAGGTCGGA+GGG - chr1_1:3077164-3077183 None:intergenic 40.0%
TGGAAGCAAATGTAGGGAAA+GGG - chr1_1:3077376-3077395 None:intergenic 40.0%
GATTAGGTGGAAGCAAATGT+AGG - chr1_1:3077383-3077402 None:intergenic 40.0%
! TCTCTTTTCAATGAGGGACA+TGG + chr1_1:3077427-3077446 Msa0001370:intron 40.0%
! CTCTTTTCAATGAGGGACAT+GGG + chr1_1:3077428-3077447 Msa0001370:intron 40.0%
! GAGTATGTTGATAGGCAGAT+TGG - chr1_1:3077496-3077515 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_1:3077547-3077566 None:intergenic 40.0%
AAACAGCGAAAACTCTTCGT+TGG - chr1_1:3077801-3077820 None:intergenic 40.0%
! AGCAGTAGAGTTCTCTAGAA+GGG - chr1_1:3077824-3077843 None:intergenic 40.0%
TATAGTTATCTGCCTTGCTG+TGG + chr1_1:3078069-3078088 Msa0001370:intron 40.0%
! ATAGTTATCTGCCTTGCTGT+GGG + chr1_1:3078070-3078089 Msa0001370:intron 40.0%
ACTAGACTAAGCAACTGTCA+GGG - chr1_1:3078112-3078131 None:intergenic 40.0%
TACTAGACTAAGCAACTGTC+AGG - chr1_1:3078113-3078132 None:intergenic 40.0%
!! ACAGTCCTCTTATGGTTTTG+TGG + chr1_1:3078238-3078257 Msa0001370:intron 40.0%
GTAGTCCACAAAACCATAAG+AGG - chr1_1:3078246-3078265 None:intergenic 40.0%
! CTATCTCTAGAAAAGCTGGA+TGG - chr1_1:3078399-3078418 None:intergenic 40.0%
TGCTTGACCATATCTGCAAA+TGG - chr1_1:3078608-3078627 None:intergenic 40.0%
CAGATATGGTCAAGCACTAA+AGG + chr1_1:3078612-3078631 Msa0001370:intron 40.0%
TCAAGCACTAAAGGTGAACT+GGG + chr1_1:3078621-3078640 Msa0001370:CDS 40.0%
!! GGGCACTTCAATGTTTTTGT+TGG + chr1_1:3078795-3078814 Msa0001370:intron 40.0%
AAAGTTGCATCAGTAACCTC+TGG - chr1_1:3078831-3078850 None:intergenic 40.0%
TCAACTTCTCACCACTAACA+AGG - chr1_1:3078978-3078997 None:intergenic 40.0%
! CTCAGTCTTGCAAGACATTT+TGG + chr1_1:3079040-3079059 Msa0001370:intron 40.0%
GTTATGTGGGATCACAAAAC+TGG + chr1_1:3079116-3079135 Msa0001370:CDS 40.0%
TGTTTCTTTCCGTGATCATC+AGG + chr1_1:3079160-3079179 Msa0001370:CDS 40.0%
TCATGATCTCCTCAGTTCAT+TGG - chr1_1:3079227-3079246 None:intergenic 40.0%
AGATGCAATTGGGCAACTAA+AGG + chr1_1:3079599-3079618 Msa0001370:CDS 40.0%
! GTACTCACTAATGGATCTTC+AGG + chr1_1:3079674-3079693 Msa0001370:CDS 40.0%
! ACCAAAGCCTTTTACTCACT+AGG + chr1_1:3079774-3079793 Msa0001370:intron 40.0%
ACCTAGTGAGTAAAAGGCTT+TGG - chr1_1:3079778-3079797 None:intergenic 40.0%
! AAAGCCTTTTACTCACTAGG+TGG + chr1_1:3079777-3079796 Msa0001370:intron 40.0%
! AAGCCTTTTACTCACTAGGT+GGG + chr1_1:3079778-3079797 Msa0001370:intron 40.0%
TTTCCACTTGGTTGCTAGAT+TGG - chr1_1:3080233-3080252 None:intergenic 40.0%
!! GTTGTTCTTTGGTTTGACTG+TGG - chr1_1:3080262-3080281 None:intergenic 40.0%
AGTCATTGTTGGACCAAACT+GGG - chr1_1:3080334-3080353 None:intergenic 40.0%
AAGTCATTGTTGGACCAAAC+TGG - chr1_1:3080335-3080354 None:intergenic 40.0%
AAATTAGGTGTGCTCTTGGA+GGG - chr1_1:3080445-3080464 None:intergenic 40.0%
GTAGAAATTAGGTGTGCTCT+TGG - chr1_1:3080449-3080468 None:intergenic 40.0%
TCGGGAAAAGGGTAGAAATT+AGG - chr1_1:3080460-3080479 None:intergenic 40.0%
AGTGAAATCAGTGAGTCTCT+TGG - chr1_1:3080497-3080516 None:intergenic 40.0%
!! CTAAGGTTTGGTCCCTTTTA+GGG - chr1_1:3080562-3080581 None:intergenic 40.0%
GGAAATTCAAGGCTAAGGTT+TGG - chr1_1:3080574-3080593 None:intergenic 40.0%
CCTTAGGAAATTCAAGGCTA+AGG - chr1_1:3080579-3080598 None:intergenic 40.0%
!! CCTTAGCCTTGAATTTCCTA+AGG + chr1_1:3080576-3080595 Msa0001370:intron 40.0%
GGAGATCCTTAGGAAATTCA+AGG - chr1_1:3080585-3080604 None:intergenic 40.0%
! TTCCTAAGGATCTCCTCTTT+TGG + chr1_1:3080590-3080609 Msa0001370:intron 40.0%
GAATCTTGAGAGACCAAAAG+AGG - chr1_1:3080606-3080625 None:intergenic 40.0%
TAGTGTCTTTGTGAGCAACT+TGG - chr1_1:3080631-3080650 None:intergenic 40.0%
AATCTTGGAACCAAAAGAGG+GGG - chr1_1:3080714-3080733 None:intergenic 40.0%
GAATCTTGGAACCAAAAGAG+GGG - chr1_1:3080715-3080734 None:intergenic 40.0%
GTGAATCTTGGAACCAAAAG+AGG - chr1_1:3080717-3080736 None:intergenic 40.0%
GGTCTTTGAGTGAGATTCAA+AGG - chr1_1:3080748-3080767 None:intergenic 40.0%
GAACTTAGGCTAAGGTTTGA+GGG - chr1_1:3080769-3080788 None:intergenic 40.0%
!! CTTTTAGGGAACTTAGGCTA+AGG - chr1_1:3080777-3080796 None:intergenic 40.0%
!! AGGGAACTTTTAGGGAACTT+AGG - chr1_1:3080783-3080802 None:intergenic 40.0%
! ACCAAAGGAGGGAACTTTTA+GGG - chr1_1:3080791-3080810 None:intergenic 40.0%
! AACCAAAGGAGGGAACTTTT+AGG - chr1_1:3080792-3080811 None:intergenic 40.0%
ACTCTCATGAAACCAAAGGA+GGG - chr1_1:3080802-3080821 None:intergenic 40.0%
CCTCTAATCATGGCATGATT+TGG - chr1_1:3080913-3080932 None:intergenic 40.0%
CCAAATCATGCCATGATTAG+AGG + chr1_1:3080910-3080929 Msa0001370:intron 40.0%
GTCTATATTAACTGACTGGC+TGG - chr1_1:3081301-3081320 None:intergenic 40.0%
AGGTCAAGATAACAGCAATG+AGG + chr1_1:3081613-3081632 Msa0001370:CDS 40.0%
AAGGTTGCCAACATAAACTG+TGG - chr1_1:3081666-3081685 None:intergenic 40.0%
!! GTTTTGGTCCATTCAATGCA+TGG + chr1_1:3081810-3081829 Msa0001370:intron 40.0%
!!! TTGCTTGTTTTGCTGGATGA+CGG + chr1_1:3081859-3081878 Msa0001370:intron 40.0%
!!! TTTTGCTGGATGACGGATTT+TGG + chr1_1:3081866-3081885 Msa0001370:intron 40.0%
!!! TTTGCTGGATGACGGATTTT+GGG + chr1_1:3081867-3081886 Msa0001370:intron 40.0%
CTAAGAACAAGTGAAGACGA+AGG - chr1_1:3081996-3082015 None:intergenic 40.0%
CTTCGTCTTCACTTGTTCTT+AGG + chr1_1:3081994-3082013 Msa0001370:intron 40.0%
CAAAACAAGGCCAATGGATA+AGG - chr1_1:3082110-3082129 None:intergenic 40.0%
TGGATTCAAAACAAGGCCAA+TGG - chr1_1:3082116-3082135 None:intergenic 40.0%
TCAAGGCTGGATTCAAAACA+AGG - chr1_1:3082123-3082142 None:intergenic 40.0%
!!! TGCCTTTTTTCAATCAAGGC+TGG - chr1_1:3082136-3082155 None:intergenic 40.0%
!!! GGAGTGCCTTTTTTCAATCA+AGG - chr1_1:3082140-3082159 None:intergenic 40.0%
!! ATTGAAAAAAGGCACTCCAG+TGG + chr1_1:3082142-3082161 Msa0001370:intron 40.0%
ATTATATCACACACTGCAGC+TGG - chr1_1:3082181-3082200 None:intergenic 40.0%
CTTCTGCTGTAGTATTACCA+TGG + chr1_1:3082212-3082231 Msa0001370:intron 40.0%
CCAATGCATGGAATTGACAA+TGG - chr1_1:3082564-3082583 None:intergenic 40.0%
CCATTGTCAATTCCATGCAT+TGG + chr1_1:3082561-3082580 Msa0001370:CDS 40.0%
TTGTCAATTCCATGCATTGG+GGG + chr1_1:3082564-3082583 Msa0001370:CDS 40.0%
TGTCAGATACAATACTCACG+AGG + chr1_1:3082636-3082655 Msa0001370:CDS 40.0%
TCTTCCATTAGCCATCTGAA+TGG - chr1_1:3082674-3082693 None:intergenic 40.0%
TAATTGACTAGACCAGCAAC+AGG - chr1_1:3082736-3082755 None:intergenic 40.0%
!! TTACTTGCTGTTTCTGTGTC+GGG + chr1_1:3082757-3082776 Msa0001370:intron 40.0%
TTGCCCTATATAATAGTGCC+TGG + chr1_1:3082788-3082807 Msa0001370:intron 40.0%
AGTCCGTCATTTCAAAATCC+AGG + chr1_1:3082878-3082897 Msa0001370:intron 40.0%
CCATTTCAAAATCCGGGTTT+CGG - chr1_1:3083032-3083051 None:intergenic 40.0%
!!! CGAAACCCGGATTTTGAAAT+GGG + chr1_1:3083030-3083049 Msa0001370:intron 40.0%
!!! GAAACCCGGATTTTGAAATG+GGG + chr1_1:3083031-3083050 Msa0001370:intron 40.0%
!!! AAACCCGGATTTTGAAATGG+GGG + chr1_1:3083032-3083051 Msa0001370:intron 40.0%
ACGTGGATCACAGAAAATAG+AGG - chr1_1:3083177-3083196 None:intergenic 40.0%
! TGATTTGTGCAGTGTTCATG+GGG + chr1_1:3083289-3083308 Msa0001370:intron 40.0%
ATTTGATATGGTTGTGCAGC+AGG - chr1_1:3083361-3083380 None:intergenic 40.0%
CAAGCTCTTCTTCAAATGTC+TGG + chr1_1:3083484-3083503 Msa0001370:CDS 40.0%
GAGTTTATACCCATTGAAGC+AGG - chr1_1:3083526-3083545 None:intergenic 40.0%
ACCAGCATATCCATCATACA+TGG - chr1_1:3083563-3083582 None:intergenic 40.0%
CTAAGAGGGTTTAATGACTC+GGG + chr1_1:3083763-3083782 Msa0001370:three_prime_UTR 40.0%
TTATCTTGTCACGACACGAA+AGG - chr1_1:3083931-3083950 None:intergenic 40.0%
ACCATTTGGGAACGAACCAA+CGG + chr1_1:3074983-3075002 Msa0001370:five_prime_UTR 45.0%
ATCTAATCTCCATCCCATCC+AGG + chr1_1:3075045-3075064 Msa0001370:five_prime_UTR 45.0%
GCGAATCGGTGAATGAAATC+TGG - chr1_1:3075086-3075105 None:intergenic 45.0%
CAACAGATGTATCACCATCC+TGG + chr1_1:3075301-3075320 Msa0001370:CDS 45.0%
GAAATTGGACAGCGGAAGAT+TGG - chr1_1:3075759-3075778 None:intergenic 45.0%
GGTATCTTCGTATTGTTGCC+AGG + chr1_1:3076353-3076372 Msa0001370:intron 45.0%
!! CATGCAGAAGCATCAAAACC+AGG - chr1_1:3076460-3076479 None:intergenic 45.0%
!! GCAGAAGTTTTTCAGAGTGC+TGG + chr1_1:3076777-3076796 Msa0001370:CDS 45.0%
GATTAATAGGGATAGGTCGG+AGG - chr1_1:3077165-3077184 None:intergenic 45.0%
! GCGATGTCCATCTACTGATT+AGG - chr1_1:3077198-3077217 None:intergenic 45.0%
GTGGAAGCAAATGTAGGGAA+AGG - chr1_1:3077377-3077396 None:intergenic 45.0%
GTAGAGGTGATAGGTTGTCA+AGG + chr1_1:3077677-3077696 Msa0001370:intron 45.0%
GAAAACTCTTCGTTGGCACT+TGG - chr1_1:3077794-3077813 None:intergenic 45.0%
GAGCAGTAGAGTTCTCTAGA+AGG - chr1_1:3077825-3077844 None:intergenic 45.0%
ACTCTACTGCTCGATGAATG+AGG + chr1_1:3077833-3077852 Msa0001370:intron 45.0%
! TAGTTATCTGCCTTGCTGTG+GGG + chr1_1:3078071-3078090 Msa0001370:intron 45.0%
GAAACAGCTGTAGAGCCATT+AGG - chr1_1:3078464-3078483 None:intergenic 45.0%
GTCAAGCACTAAAGGTGAAC+TGG + chr1_1:3078620-3078639 Msa0001370:CDS 45.0%
GGCATATGCTAATAGCAGCA+GGG + chr1_1:3078642-3078661 Msa0001370:CDS 45.0%
ATATGCTAATAGCAGCAGGG+AGG + chr1_1:3078645-3078664 Msa0001370:CDS 45.0%
!! TGTTGGTGATTTGAGTCCAG+AGG + chr1_1:3078812-3078831 Msa0001370:CDS 45.0%
AAAGGGGGAAAAAAGCAACG+AGG - chr1_1:3078894-3078913 None:intergenic 45.0%
CAGTGATGCTAGGGTTATGT+GGG + chr1_1:3079103-3079122 Msa0001370:intron 45.0%
CACAAAACTGGTCGCTCAAA+AGG + chr1_1:3079128-3079147 Msa0001370:CDS 45.0%
ACTGGTCGCTCAAAAGGATA+TGG + chr1_1:3079134-3079153 Msa0001370:CDS 45.0%
AGAGACCAACCAATGAACTG+AGG + chr1_1:3079215-3079234 Msa0001370:intron 45.0%
GATCTCCTCAGTTCATTGGT+TGG - chr1_1:3079223-3079242 None:intergenic 45.0%
CAGGTAAATGGCTGGGAAAT+AGG + chr1_1:3079570-3079589 Msa0001370:intron 45.0%
AATTGGGCAACTAAAGGAGC+TGG + chr1_1:3079605-3079624 Msa0001370:CDS 45.0%
! AGCCTTTTACTCACTAGGTG+GGG + chr1_1:3079779-3079798 Msa0001370:intron 45.0%
AACCCCACCTAGTGAGTAAA+AGG - chr1_1:3079784-3079803 None:intergenic 45.0%
! TTTTACTCACTAGGTGGGGT+TGG + chr1_1:3079783-3079802 Msa0001370:intron 45.0%
GCTAGTGACTGTTTGGTTGT+TGG - chr1_1:3080191-3080210 None:intergenic 45.0%
GATCCAATCTAGCAACCAAG+TGG + chr1_1:3080227-3080246 Msa0001370:intron 45.0%
!! CTGTGGTTTTGCTTTCCACT+TGG - chr1_1:3080245-3080264 None:intergenic 45.0%
GTCCAACAATGACTTACGTC+TGG + chr1_1:3080340-3080359 Msa0001370:intron 45.0%
CTCCAGACGTAAGTCATTGT+TGG - chr1_1:3080345-3080364 None:intergenic 45.0%
CAACAATGACTTACGTCTGG+AGG + chr1_1:3080343-3080362 Msa0001370:intron 45.0%
GAAATTAGGTGTGCTCTTGG+AGG - chr1_1:3080446-3080465 None:intergenic 45.0%
CGAGAAGAGATTCGGGAAAA+GGG - chr1_1:3080471-3080490 None:intergenic 45.0%
ACGAGAAGAGATTCGGGAAA+AGG - chr1_1:3080472-3080491 None:intergenic 45.0%
TTGGTCACGAGAAGAGATTC+GGG - chr1_1:3080478-3080497 None:intergenic 45.0%
CTTGGTCACGAGAAGAGATT+CGG - chr1_1:3080479-3080498 None:intergenic 45.0%
!! CTCACTGATTTCACTACCCA+AGG + chr1_1:3080502-3080521 Msa0001370:intron 45.0%
!! GCTAAGGTTTGGTCCCTTTT+AGG - chr1_1:3080563-3080582 None:intergenic 45.0%
GACCAAAAGAGGAGATCCTT+AGG - chr1_1:3080595-3080614 None:intergenic 45.0%
!!! GAAAGGGTTGGTACCTTTTG+GGG - chr1_1:3080684-3080703 None:intergenic 45.0%
!!! GGAAAGGGTTGGTACCTTTT+GGG - chr1_1:3080685-3080704 None:intergenic 45.0%
AAGGGTCAAGACGTGAATCT+TGG - chr1_1:3080729-3080748 None:intergenic 45.0%
GGAACTTAGGCTAAGGTTTG+AGG - chr1_1:3080770-3080789 None:intergenic 45.0%
TCCCTAAAAGTTCCCTCCTT+TGG + chr1_1:3080787-3080806 Msa0001370:intron 45.0%
GACTCTCATGAAACCAAAGG+AGG - chr1_1:3080803-3080822 None:intergenic 45.0%
TCATGAGAGTCCCCAACAAA+TGG + chr1_1:3080812-3080831 Msa0001370:intron 45.0%
CATGAGAGTCCCCAACAAAT+GGG + chr1_1:3080813-3080832 Msa0001370:intron 45.0%
ATGTTTAATCCTGGCGCGAT+TGG - chr1_1:3080873-3080892 None:intergenic 45.0%
! TCATGGCATGATTTGGGCAA+CGG - chr1_1:3080906-3080925 None:intergenic 45.0%
CATCCAAAATTGTGGCACGA+TGG - chr1_1:3080936-3080955 None:intergenic 45.0%
!!! TTGCTGGATGACGGATTTTG+GGG + chr1_1:3081868-3081887 Msa0001370:intron 45.0%
!! TAAGTGAGGCATTGAGACTC+AGG - chr1_1:3081968-3081987 None:intergenic 45.0%
GAACAAGTGAAGACGAAGGT+GGG - chr1_1:3081992-3082011 None:intergenic 45.0%
AGAACAAGTGAAGACGAAGG+TGG - chr1_1:3081993-3082012 None:intergenic 45.0%
TTACCATGGCAGACATCACT+AGG + chr1_1:3082226-3082245 Msa0001370:intron 45.0%
GGCTGCAGTACTTACAGTTA+CGG + chr1_1:3082270-3082289 Msa0001370:intron 45.0%
ACAACTGTGCTTGAGATCAC+AGG + chr1_1:3082522-3082541 Msa0001370:intron 45.0%
ATGGCCATTCAGATGGCTAA+TGG + chr1_1:3082667-3082686 Msa0001370:CDS 45.0%
TCAGATGGCTAATGGAAGAC+CGG + chr1_1:3082675-3082694 Msa0001370:CDS 45.0%
TTCATAGTCTTCCCACGAAC+CGG - chr1_1:3082697-3082716 None:intergenic 45.0%
AGAATCCTTTCACCTGTTGC+TGG + chr1_1:3082721-3082740 Msa0001370:intron 45.0%
!! TACTTGCTGTTTCTGTGTCG+GGG + chr1_1:3082758-3082777 Msa0001370:intron 45.0%
TGGGGCTAAAAACTATGGCA+GGG - chr1_1:3082943-3082962 None:intergenic 45.0%
TTGGGGCTAAAAACTATGGC+AGG - chr1_1:3082944-3082963 None:intergenic 45.0%
! GTCACCCAGTGGTGATTTTT+GGG - chr1_1:3083010-3083029 None:intergenic 45.0%
!! CCGAAACCCGGATTTTGAAA+TGG + chr1_1:3083029-3083048 Msa0001370:intron 45.0%
!!! AACCCGGATTTTGAAATGGG+GGG + chr1_1:3083033-3083052 Msa0001370:intron 45.0%
AGTCCCCCCATTTCAAAATC+CGG - chr1_1:3083039-3083058 None:intergenic 45.0%
TTGGGAGACCAAAAGTGAAC+AGG + chr1_1:3083080-3083099 Msa0001370:intron 45.0%
! CTTTTGTTCCTTCCGCCAAT+TGG + chr1_1:3083112-3083131 Msa0001370:intron 45.0%
TAGCAGCACTGTAGCATACT+CGG + chr1_1:3083140-3083159 Msa0001370:intron 45.0%
ATCACAGATGCTGTCAAACG+TGG - chr1_1:3083194-3083213 None:intergenic 45.0%
! AATGGATTTGAAGCTGTCCC+AGG - chr1_1:3083331-3083350 None:intergenic 45.0%
CTGATAAGCCAACAACTCAG+CGG - chr1_1:3083419-3083438 None:intergenic 45.0%
GAAGAAGAGCTTGTCCTGAA+AGG - chr1_1:3083477-3083496 None:intergenic 45.0%
CTTCAAATGTCTGGACAGCA+TGG + chr1_1:3083493-3083512 Msa0001370:CDS 45.0%
GCATCTCAAGCCATGTATGA+TGG + chr1_1:3083550-3083569 Msa0001370:CDS 45.0%
!! GCCATGTATGATGGATATGC+TGG + chr1_1:3083559-3083578 Msa0001370:CDS 45.0%
TCACGACACGAAAGGAAAAC+AGG - chr1_1:3083923-3083942 None:intergenic 45.0%
!! AATAACAAATATTAAAAATT+GGG - chr1_1:3076392-3076411 None:intergenic 5.0%
!! AAATAACAAATATTAAAAAT+TGG - chr1_1:3076393-3076412 None:intergenic 5.0%
!!! ATTTTTAATATTTGTTATTT+TGG + chr1_1:3076393-3076412 Msa0001370:intron 5.0%
!!! TTTATTTACAAAATATTTTT+TGG + chr1_1:3082378-3082397 Msa0001370:intron 5.0%
GTTCGTTCCCAAATGGTGTG+TGG - chr1_1:3074980-3074999 None:intergenic 50.0%
CCATTTGGGAACGAACCAAC+GGG + chr1_1:3074984-3075003 Msa0001370:five_prime_UTR 50.0%
TTGAGTGCGTACCTGAGTCA+TGG - chr1_1:3075344-3075363 None:intergenic 50.0%
TAGATGGAGCCTGTACCAAG+TGG + chr1_1:3076424-3076443 Msa0001370:intron 50.0%
GGCAGATTTCCACTTGGTAC+AGG - chr1_1:3076436-3076455 None:intergenic 50.0%
!! GCAGAAGCATCAAAACCAGG+AGG - chr1_1:3076457-3076476 None:intergenic 50.0%
ATGCCGTAGTGTGTGAGTGT+TGG + chr1_1:3076477-3076496 Msa0001370:intron 50.0%
CTCATCCTTACAAAACCGGC+TGG + chr1_1:3077549-3077568 Msa0001370:intron 50.0%
CTACTGCTCGATGAATGAGG+TGG + chr1_1:3077836-3077855 Msa0001370:intron 50.0%
GGGCATATGCTAATAGCAGC+AGG + chr1_1:3078641-3078660 Msa0001370:CDS 50.0%
GCAGTGATGCTAGGGTTATG+TGG + chr1_1:3079102-3079121 Msa0001370:intron 50.0%
TTCCCAGCCATTTACCTGCA+CGG - chr1_1:3079568-3079587 None:intergenic 50.0%
CATGGGATGGGAAACACATG+AGG - chr1_1:3080654-3080673 None:intergenic 50.0%
!! CCTTTTGGGGAGAGGTTCAT+GGG - chr1_1:3080671-3080690 None:intergenic 50.0%
!! ACCTTTTGGGGAGAGGTTCA+TGG - chr1_1:3080672-3080691 None:intergenic 50.0%
!!! GGGAAAGGGTTGGTACCTTT+TGG - chr1_1:3080686-3080705 None:intergenic 50.0%
AACCAAAAGAGGGGGCTCTT+GGG - chr1_1:3080706-3080725 None:intergenic 50.0%
GGGGACTCTCATGAAACCAA+AGG - chr1_1:3080806-3080825 None:intergenic 50.0%
! AGGCCATCGTGCCACAATTT+TGG + chr1_1:3080930-3080949 Msa0001370:intron 50.0%
!! AGACGAAGGTGGGTTAAGTG+AGG - chr1_1:3081982-3082001 None:intergenic 50.0%
AATTCCATGCATTGGGGGCA+GGG + chr1_1:3082569-3082588 Msa0001370:CDS 50.0%
! AACCTTTGCCGCTCTGAACT+CGG - chr1_1:3082609-3082628 None:intergenic 50.0%
! GTTCAGAGCGGCAAAGGTTT+TGG + chr1_1:3082610-3082629 Msa0001370:CDS 50.0%
TACTCACGAGGAAGCAGCAA+TGG + chr1_1:3082648-3082667 Msa0001370:CDS 50.0%
AGCAGCAATGGCCATTCAGA+TGG + chr1_1:3082660-3082679 Msa0001370:CDS 50.0%
!! CTAATGGAAGACCGGTTCGT+GGG + chr1_1:3082683-3082702 Msa0001370:CDS 50.0%
GGTTCGTGGGAAGACTATGA+AGG + chr1_1:3082696-3082715 Msa0001370:CDS 50.0%
CTAGACCAGCAACAGGTGAA+AGG - chr1_1:3082729-3082748 None:intergenic 50.0%
TTGGGCCCAAAAATCACCAC+TGG + chr1_1:3083002-3083021 Msa0001370:intron 50.0%
TGGGCCCAAAAATCACCACT+GGG + chr1_1:3083003-3083022 Msa0001370:intron 50.0%
! GGTCACCCAGTGGTGATTTT+TGG - chr1_1:3083011-3083030 None:intergenic 50.0%
GTCCCCCCATTTCAAAATCC+GGG - chr1_1:3083038-3083057 None:intergenic 50.0%
! AGTGCTGCTATAGCGCCAAT+TGG - chr1_1:3083130-3083149 None:intergenic 50.0%
GTAGCAAACCAACTCCTCCT+GGG + chr1_1:3083311-3083330 Msa0001370:CDS 50.0%
TGATATGGTTGTGCAGCAGG+AGG - chr1_1:3083358-3083377 None:intergenic 50.0%
CTATACTGCCGCTGAGTTGT+TGG + chr1_1:3083408-3083427 Msa0001370:CDS 50.0%
AGAAACAGCAGCCTGACTCA+AGG - chr1_1:3083452-3083471 None:intergenic 50.0%
!! TTGAGTCAGGCTGCTGTTTC+TGG + chr1_1:3083451-3083470 Msa0001370:CDS 50.0%
TACCCATTGAAGCAGGAGCT+AGG - chr1_1:3083519-3083538 None:intergenic 50.0%
!! CCCGTTGGTTCGTTCCCAAA+TGG - chr1_1:3074987-3075006 None:intergenic 55.0%
AGTGCGTACCTGAGTCATGG+CGG - chr1_1:3075341-3075360 None:intergenic 55.0%
CCAGGAGGCAGATTTCCACT+TGG - chr1_1:3076442-3076461 None:intergenic 55.0%
CCAAGTGGAAATCTGCCTCC+TGG + chr1_1:3076439-3076458 Msa0001370:CDS 55.0%
TGAGCTTGCACCCAGCAAGA+GGG - chr1_1:3076803-3076822 None:intergenic 55.0%
ATGAGCTTGCACCCAGCAAG+AGG - chr1_1:3076804-3076823 None:intergenic 55.0%
GATGGACATCGCACTAGCAG+TGG + chr1_1:3077206-3077225 Msa0001370:intron 55.0%
CGCACTAGCAGTGGAGTGAA+AGG + chr1_1:3077215-3077234 Msa0001370:intron 55.0%
!! CCTTGCCAGCCGGTTTTGTA+AGG - chr1_1:3077557-3077576 None:intergenic 55.0%
CCTTACAAAACCGGCTGGCA+AGG + chr1_1:3077554-3077573 Msa0001370:intron 55.0%
AAAACCGGCTGGCAAGGTGA+GGG + chr1_1:3077560-3077579 Msa0001370:intron 55.0%
TAAACCCTCACCTTGCCAGC+CGG - chr1_1:3077567-3077586 None:intergenic 55.0%
GCTGGCAAGGTGAGGGTTTA+GGG + chr1_1:3077567-3077586 Msa0001370:intron 55.0%
TCTTCGTTGGCACTTGGCAC+AGG - chr1_1:3077788-3077807 None:intergenic 55.0%
CTCTCTCAAGCTCTCGCTCT+CGG - chr1_1:3077975-3077994 None:intergenic 55.0%
TAACTGTGCACCCCACAGCA+AGG - chr1_1:3078084-3078103 None:intergenic 55.0%
TCATGCGCCGTGCAGGTAAA+TGG + chr1_1:3079558-3079577 Msa0001370:intron 55.0%
TGGGCAACTAAAGGAGCTGG+TGG + chr1_1:3079608-3079627 Msa0001370:CDS 55.0%
TGGGGAGAGGTTCATGGGAT+GGG - chr1_1:3080666-3080685 None:intergenic 55.0%
TTGGGGAGAGGTTCATGGGA+TGG - chr1_1:3080667-3080686 None:intergenic 55.0%
CCCATGAACCTCTCCCCAAA+AGG + chr1_1:3080668-3080687 Msa0001370:intron 55.0%
!! GGTTGGTACCTTTTGGGGAG+AGG - chr1_1:3080679-3080698 None:intergenic 55.0%
AAGAGGGGGCTCTTGGGAAA+GGG - chr1_1:3080700-3080719 None:intergenic 55.0%
AAAGAGGGGGCTCTTGGGAA+AGG - chr1_1:3080701-3080720 None:intergenic 55.0%
! TTCCCAAGAGCCCCCTCTTT+TGG + chr1_1:3080701-3080720 Msa0001370:intron 55.0%
GAACCAAAAGAGGGGGCTCT+TGG - chr1_1:3080707-3080726 None:intergenic 55.0%
GGCGCGATTGGAACAGGTAT+AGG - chr1_1:3080861-3080880 None:intergenic 55.0%
ATACCTGTTCCAATCGCGCC+AGG + chr1_1:3080861-3080880 Msa0001370:intron 55.0%
AATCCTGGCGCGATTGGAAC+AGG - chr1_1:3080867-3080886 None:intergenic 55.0%
GGCACGATGGCCTCTAATCA+TGG - chr1_1:3080923-3080942 None:intergenic 55.0%
! GCGCCGTCCATCACTTCTTT+TGG + chr1_1:3081414-3081433 Msa0001370:intron 55.0%
CCACCTAGTGATGTCTGCCA+TGG - chr1_1:3082232-3082251 None:intergenic 55.0%
CCATGGCAGACATCACTAGG+TGG + chr1_1:3082229-3082248 Msa0001370:intron 55.0%
CTAGGTGGACAGTTGCAGTG+TGG + chr1_1:3082244-3082263 Msa0001370:intron 55.0%
TGGACAGTTGCAGTGTGGCA+TGG + chr1_1:3082249-3082268 Msa0001370:intron 55.0%
CAATTCCATGCATTGGGGGC+AGG + chr1_1:3082568-3082587 Msa0001370:CDS 55.0%
ATTCCATGCATTGGGGGCAG+GGG + chr1_1:3082570-3082589 Msa0001370:CDS 55.0%
!! GCTAATGGAAGACCGGTTCG+TGG + chr1_1:3082682-3082701 Msa0001370:CDS 55.0%
GGAACTGGGAGACCAAAACC+TGG - chr1_1:3082899-3082918 None:intergenic 55.0%
CTATAGCGCCAATTGGCGGA+AGG - chr1_1:3083123-3083142 None:intergenic 55.0%
GCTGCTATAGCGCCAATTGG+CGG - chr1_1:3083127-3083146 None:intergenic 55.0%
GGTAGCAAACCAACTCCTCC+TGG + chr1_1:3083310-3083329 Msa0001370:CDS 55.0%
! GGATTTGAAGCTGTCCCAGG+AGG - chr1_1:3083328-3083347 None:intergenic 55.0%
TGTGCAGCAGGAGGAGGTAA+TGG - chr1_1:3083349-3083368 None:intergenic 55.0%
TATGGTTGTGCAGCAGGAGG+AGG - chr1_1:3083355-3083374 None:intergenic 55.0%
CCTTGGTTCATCCCTGCAGT+AGG - chr1_1:3083388-3083407 None:intergenic 55.0%
CCTACTGCAGGGATGAACCA+AGG + chr1_1:3083385-3083404 Msa0001370:CDS 55.0%
ACTCAGCGGCAGTATAGCCT+TGG - chr1_1:3083405-3083424 None:intergenic 55.0%
!! GCTGCTGTTTCTGGCCTTTC+AGG + chr1_1:3083460-3083479 Msa0001370:CDS 55.0%
TGGCCTAGCTCCTGCTTCAA+TGG + chr1_1:3083513-3083532 Msa0001370:CDS 55.0%
GGCCTAGCTCCTGCTTCAAT+GGG + chr1_1:3083514-3083533 Msa0001370:CDS 55.0%
CAACGCAACTTGCCACCAGA+AGG - chr1_1:3083650-3083669 None:intergenic 55.0%
TATTGCTGCTCGACGCCCGT+TGG - chr1_1:3075002-3075021 None:intergenic 60.0%
TACCTGAGTCATGGCGGCAG+CGG - chr1_1:3075335-3075354 None:intergenic 60.0%
!! AGAGTGCTGGCCCTCTTGCT+GGG + chr1_1:3076790-3076809 Msa0001370:CDS 60.0%
CAAAACCGGCTGGCAAGGTG+AGG + chr1_1:3077559-3077578 Msa0001370:intron 60.0%
GGCTGGCAAGGTGAGGGTTT+AGG + chr1_1:3077566-3077585 Msa0001370:intron 60.0%
GTTGGCACTTGGCACAGGTC+AGG - chr1_1:3077783-3077802 None:intergenic 60.0%
GCGCTGCAGATGCTCGATCA+TGG - chr1_1:3078268-3078287 None:intergenic 60.0%
AGCAGCAGGGAGGATACCTC+AGG + chr1_1:3078655-3078674 Msa0001370:CDS 60.0%
CGCCGTGCAGGTAAATGGCT+GGG + chr1_1:3079563-3079582 Msa0001370:intron 60.0%
CGGCAGCAACTTCAGTGTCG+AGG + chr1_1:3082290-3082309 Msa0001370:intron 60.0%
!! ATTGGGGGCAGGGGTACTTG+AGG + chr1_1:3082579-3082598 Msa0001370:CDS 60.0%
GAGGAGGTCCGAGTTCAGAG+CGG + chr1_1:3082598-3082617 Msa0001370:CDS 60.0%
GTCCGAGTTCAGAGCGGCAA+AGG + chr1_1:3082604-3082623 Msa0001370:CDS 60.0%
ACCACTGGGTGACCGAAACC+CGG + chr1_1:3083017-3083036 Msa0001370:intron 60.0%
GAAGCTGTCCCAGGAGGAGT+TGG - chr1_1:3083322-3083341 None:intergenic 60.0%
CAGCCTGACTCAAGGCAAGC+TGG - chr1_1:3083444-3083463 None:intergenic 60.0%
CCAGAAGGCAACAACGCGAC+TGG - chr1_1:3083635-3083654 None:intergenic 60.0%
CCAGTCGCGTTGTTGCCTTC+TGG + chr1_1:3083632-3083651 Msa0001370:three_prime_UTR 60.0%
GTCGCGTTGTTGCCTTCTGG+TGG + chr1_1:3083635-3083654 Msa0001370:three_prime_UTR 60.0%
!! CAGAGTGCTGGCCCTCTTGC+TGG + chr1_1:3076789-3076808 Msa0001370:CDS 65.0%
GCGCCGTGCAGGTAAATGGC+TGG + chr1_1:3079562-3079581 Msa0001370:intron 65.0%
GGGGGCTCTTGGGAAAGGGT+TGG - chr1_1:3080696-3080715 None:intergenic 65.0%
GTACCCCTGCCCCCAATGCA+TGG - chr1_1:3082576-3082595 None:intergenic 65.0%
TCCGGGTTTCGGTCACCCAG+TGG - chr1_1:3083021-3083040 None:intergenic 65.0%
GCGCCAGCTTGCCTTGAGTC+AGG + chr1_1:3083438-3083457 Msa0001370:CDS 65.0%
CAGCGGCGAGCATGCCAGGA+TGG - chr1_1:3075318-3075337 None:intergenic 70.0%
!! GGGGGCAGGGGTACTTGAGG+AGG + chr1_1:3082582-3082601 Msa0001370:CDS 70.0%
CGCCGCTGCCGCCATGACTC+AGG + chr1_1:3075330-3075349 Msa0001370:CDS 75.0%
! GCGGCAGCGGCGAGCATGCC+AGG - chr1_1:3075322-3075341 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3074856 3083963 3074856 ID=Msa0001370;Name=Msa0001370
chr1_1 mRNA 3074856 3083963 3074856 ID=Msa0001370-mRNA-1;Parent=Msa0001370;Name=Msa0001370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244|1|1|1|0.91|0.84|13|345|444
chr1_1 exon 3074856 3075066 3074856 ID=Msa0001370-mRNA-1:exon:758;Parent=Msa0001370-mRNA-1
chr1_1 exon 3075184 3075351 3075184 ID=Msa0001370-mRNA-1:exon:759;Parent=Msa0001370-mRNA-1
chr1_1 exon 3076427 3076488 3076427 ID=Msa0001370-mRNA-1:exon:760;Parent=Msa0001370-mRNA-1
chr1_1 exon 3076734 3076836 3076734 ID=Msa0001370-mRNA-1:exon:761;Parent=Msa0001370-mRNA-1
chr1_1 exon 3078242 3078318 3078242 ID=Msa0001370-mRNA-1:exon:762;Parent=Msa0001370-mRNA-1
chr1_1 exon 3078615 3078676 3078615 ID=Msa0001370-mRNA-1:exon:763;Parent=Msa0001370-mRNA-1
chr1_1 exon 3078796 3078883 3078796 ID=Msa0001370-mRNA-1:exon:764;Parent=Msa0001370-mRNA-1
chr1_1 exon 3079106 3079181 3079106 ID=Msa0001370-mRNA-1:exon:765;Parent=Msa0001370-mRNA-1
chr1_1 exon 3079431 3079461 3079431 ID=Msa0001370-mRNA-1:exon:766;Parent=Msa0001370-mRNA-1
chr1_1 exon 3079573 3079695 3079573 ID=Msa0001370-mRNA-1:exon:767;Parent=Msa0001370-mRNA-1
chr1_1 exon 3081609 3081694 3081609 ID=Msa0001370-mRNA-1:exon:768;Parent=Msa0001370-mRNA-1
chr1_1 exon 3082544 3082717 3082544 ID=Msa0001370-mRNA-1:exon:769;Parent=Msa0001370-mRNA-1
chr1_1 exon 3083301 3083963 3083301 ID=Msa0001370-mRNA-1:exon:770;Parent=Msa0001370-mRNA-1
chr1_1 five_prime_UTR 3074856 3075066 3074856 ID=Msa0001370-mRNA-1:five_prime_utr;Parent=Msa0001370-mRNA-1
chr1_1 five_prime_UTR 3075184 3075216 3075184 ID=Msa0001370-mRNA-1:five_prime_utr;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3075217 3075351 3075217 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3076427 3076488 3076427 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3076734 3076836 3076734 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3078242 3078318 3078242 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3078615 3078676 3078615 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3078796 3078883 3078796 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3079106 3079181 3079106 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3079431 3079461 3079431 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3079573 3079695 3079573 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3081609 3081694 3081609 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3082544 3082717 3082544 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 CDS 3083301 3083618 3083301 ID=Msa0001370-mRNA-1:cds;Parent=Msa0001370-mRNA-1
chr1_1 three_prime_UTR 3083619 3083963 3083619 ID=Msa0001370-mRNA-1:three_prime_utr;Parent=Msa0001370-mRNA-1
Gene Sequence

>Msa0001370

ATGCAACAGAGGCTAAAGTTGCAACAACAACAACAACAACAACAACAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAACAACAACAGATGTATCACCATCCTGGCATGCTCGCCGCTGCCGCCATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAACGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATACGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCGCTTGCAATAATGACATTACATGGACGGCAACTATATGGTCAAGCACTAAAGGTGAACTGGGCATATGCTAATAGCAGCAGGGAGGATACCTCAGGGCACTTCAATGTTTTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGCAGCTCAAACGAAGAGAAGATCAATGACAGCCAAAATGCTGTTGTACTCACTAATGGATCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGGGCAGGGGTACTTGAGGAGGTCCGAGTTCAGAGCGGCAAAGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCAATGGCCATTCAGATGGCTAATGGAAGACCGGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCTTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATACTGCCGCTGAGTTGTTGGCTTATCAGCGCCAGCTTGCCTTGAGTCAGGCTGCTGTTTCTGGCCTTTCAGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGCAGCATCTCAAGCCATGTATGATGGATATGCTGGTAATTCTTCAAGACAGCAGCTTATGTACTATCGTTAA
Protein sequence

>Msa0001370

MQQRLKLQQQQQQQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYAGNSSRQQLMYYR*