AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348290 MtrunA17_Chr3g0139111 99.323 443 0 1 1 443 1 440 0.0 913
Msa1348290 MtrunA17_Chr8g0344491 64.578 415 123 8 32 443 34 427 0.0 528
Msa1348290 MtrunA17_Chr4g0070231 58.080 427 153 5 17 443 4 404 0.0 511
Msa1348290 MtrunA17_Chr2g0288251 32.803 314 179 8 54 354 49 343 8.68e-41 150
Msa1348290 MtrunA17_Chr4g0074711 30.769 312 187 8 53 354 64 356 2.96e-39 146
Msa1348290 MtrunA17_Chr4g0045221 33.663 303 172 10 62 345 115 407 7.07e-38 143
Msa1348290 MtrunA17_Chr1g0153871 30.479 292 174 6 63 345 97 368 1.29e-37 142
Msa1348290 MtrunA17_Chr1g0153871 25.532 188 114 4 56 223 183 364 1.39e-12 69.3
Msa1348290 MtrunA17_Chr3g0133651 31.000 300 177 6 56 345 86 365 1.40e-37 141
Msa1348290 MtrunA17_Chr2g0328791 31.270 307 193 8 62 356 14 314 9.25e-36 137
Msa1348290 MtrunA17_Chr3g0110211 33.333 168 105 3 64 226 26 191 1.39e-27 113
Msa1348290 MtrunA17_Chr1g0153181 26.510 298 177 8 47 335 15 279 4.30e-24 105
Msa1348290 MtrunA17_Chr1g0153181 25.685 292 190 7 55 337 112 385 1.38e-18 88.6
Msa1348290 MtrunA17_Chr7g0265341 26.645 304 179 8 49 344 59 326 1.92e-23 103
Msa1348290 MtrunA17_Chr7g0265341 25.914 301 191 8 55 344 150 429 5.54e-16 80.5
Msa1348290 MtrunA17_Chr4g0044541 26.429 280 165 8 64 335 35 281 9.76e-23 101
Msa1348290 MtrunA17_Chr4g0044541 27.077 325 200 9 38 344 88 393 1.56e-19 91.3
Msa1348290 MtrunA17_Chr6g0465751 25.275 273 161 5 64 329 26 262 1.11e-22 100
Msa1348290 MtrunA17_Chr6g0465751 29.121 182 109 4 64 226 201 381 3.14e-16 81.3
Msa1348290 MtrunA17_Chr6g0466501 24.908 273 162 5 64 329 26 262 9.58e-22 98.2
Msa1348290 MtrunA17_Chr6g0466501 29.121 182 109 4 64 226 201 381 1.01e-15 79.3
Msa1348290 MtrunA17_Chr3g0134141 26.786 280 164 7 64 335 25 271 8.43e-21 95.1
Msa1348290 MtrunA17_Chr3g0134141 25.967 181 115 4 64 226 204 383 2.41e-11 65.9
Msa1348290 MtrunA17_Chr1g0179701 24.126 286 178 5 59 337 58 311 6.38e-19 89.4
Msa1348290 MtrunA17_Chr1g0179701 26.578 301 183 10 58 344 141 417 3.49e-16 80.9
Msa1348290 MtrunA17_Chr1g0201151 25.000 292 192 6 55 337 110 383 2.30e-18 87.8
Msa1348290 MtrunA17_Chr1g0201151 25.271 277 166 9 64 332 31 274 1.51e-17 85.1
Msa1348290 MtrunA17_Chr6g0465631 25.753 299 180 9 55 337 7 279 4.60e-18 86.7
Msa1348290 MtrunA17_Chr6g0466451 25.753 299 180 9 55 337 7 279 4.81e-18 86.3
Msa1348290 MtrunA17_Chr6g0465691 24.832 298 195 8 55 344 23 299 9.15e-17 82.4
Msa1348290 MtrunA17_Chr0c09g0493511 28.571 182 110 4 64 226 119 299 2.54e-16 81.3
Msa1348290 MtrunA17_Chr0c09g0493511 24.161 298 197 8 55 344 23 299 2.63e-16 81.3
Msa1348290 MtrunA17_Chr3g0116631 29.651 172 109 2 65 224 111 282 4.50e-16 78.6
Msa1348290 MtrunA17_Chr4g0058151 28.824 170 110 3 65 224 124 292 6.95e-15 75.1
Msa1348290 MtrunA17_Chr7g0267571 25.352 213 129 5 150 353 111 302 3.71e-14 73.2
Msa1348290 MtrunA17_Chr7g0267571 25.281 178 115 2 65 224 111 288 9.39e-13 68.9
Msa1348290 MtrunA17_Chr1g0190211 41.892 74 43 0 148 221 132 205 4.07e-14 72.0
Msa1348290 MtrunA17_Chr3g0087481 27.624 181 117 2 58 224 55 235 1.02e-13 70.5
Msa1348290 MtrunA17_Chr3g0087481 25.258 194 118 3 150 339 62 232 1.86e-11 63.9
Msa1348290 MtrunA17_Chr1g0177101 23.558 208 145 2 58 251 103 310 3.40e-13 70.1
Msa1348290 MtrunA17_Chr1g0177101 26.289 194 116 4 150 339 110 280 4.70e-12 66.6
Msa1348290 MtrunA17_Chr1g0181111 27.807 187 108 2 65 224 86 272 5.62e-13 69.3
Msa1348290 MtrunA17_Chr7g0219021 37.975 79 49 0 150 228 42 120 3.58e-12 66.2
Msa1348290 MtrunA17_Chr3g0121631 42.667 75 42 1 150 224 38 111 6.15e-12 63.2
Msa1348290 MtrunA17_Chr1g0168601 30.400 125 85 1 102 224 105 229 8.02e-12 65.1
Msa1348290 MtrunA17_Chr4g0061451 37.662 77 48 0 150 226 44 120 8.20e-12 65.5
Msa1348290 MtrunA17_Chr3g0119311 37.037 81 51 0 150 230 38 118 7.00e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348290 AT1G17370.1 61.743 413 138 8 32 443 26 419 3.61e-180 509
Msa1348290 AT3G14100.1 62.260 416 134 9 32 443 31 427 4.90e-179 507
Msa1348290 AT1G17370.2 61.501 413 136 9 32 443 26 416 1.26e-177 503
Msa1348290 AT1G54080.1 59.529 425 144 7 23 443 26 426 7.55e-173 491
Msa1348290 AT1G54080.2 58.974 429 144 8 23 443 26 430 1.71e-170 485
Msa1348290 AT5G19350.1 29.795 292 193 6 62 345 23 310 4.85e-39 146
Msa1348290 AT4G27000.1 31.650 297 174 8 59 346 76 352 8.59e-39 145
Msa1348290 AT4G27000.1 27.442 215 109 6 149 356 81 255 2.22e-13 72.0
Msa1348290 AT5G19350.2 29.795 292 189 6 62 345 23 306 1.54e-38 144
Msa1348290 AT5G54900.1 31.650 297 174 9 59 345 56 333 2.32e-38 143
Msa1348290 AT3G19130.1 32.095 296 181 8 62 345 107 394 6.02e-37 140
Msa1348290 AT1G49600.1 31.973 294 179 9 62 345 118 400 2.50e-36 139
Msa1348290 AT1G49600.3 31.973 294 179 9 62 345 118 400 2.60e-36 139
Msa1348290 AT1G49600.2 31.973 294 179 9 62 345 118 400 2.60e-36 139
Msa1348290 AT1G11650.2 29.630 297 181 6 59 346 58 335 2.80e-35 135
Msa1348290 AT1G47490.1 29.831 295 177 8 63 345 101 377 4.43e-31 124
Msa1348290 AT1G11650.1 28.947 266 161 6 59 315 58 304 7.11e-29 115
Msa1348290 AT1G47500.1 29.831 295 177 9 63 345 103 379 1.82e-28 117
Msa1348290 AT2G18510.1 33.333 168 105 3 64 226 26 191 1.44e-27 113
Msa1348290 AT1G71770.1 26.471 272 164 6 64 329 60 301 5.42e-25 108
Msa1348290 AT1G71770.1 26.316 304 194 6 52 344 135 419 3.43e-20 94.0
Msa1348290 AT1G71770.2 26.471 272 164 6 64 329 60 301 5.42e-25 108
Msa1348290 AT1G71770.2 26.316 304 194 6 52 344 135 419 3.43e-20 94.0
Msa1348290 AT4G34110.1 27.372 274 158 6 64 329 37 277 7.67e-25 107
Msa1348290 AT4G34110.1 27.055 292 185 8 55 337 116 388 1.19e-19 92.0
Msa1348290 AT3G16380.1 29.433 282 171 6 64 337 113 374 2.28e-24 106
Msa1348290 AT3G16380.1 26.460 291 165 10 64 338 22 279 1.00e-16 82.8
Msa1348290 AT1G22760.1 27.206 272 162 8 64 329 50 291 2.69e-24 106
Msa1348290 AT1G22760.1 25.329 304 197 6 52 344 125 409 2.08e-18 88.2
Msa1348290 AT2G23350.1 30.742 283 168 8 64 337 135 398 3.99e-23 102
Msa1348290 AT2G23350.1 28.622 283 161 6 61 335 44 293 1.23e-22 101
Msa1348290 AT1G49760.1 27.007 274 161 5 64 330 46 287 9.35e-23 101
Msa1348290 AT1G49760.1 27.723 303 183 10 55 344 125 404 4.42e-22 99.8
Msa1348290 AT1G49760.2 27.007 274 161 5 64 330 46 287 9.35e-23 101
Msa1348290 AT1G49760.2 27.723 303 183 10 55 344 125 404 4.42e-22 99.8
Msa1348290 AT1G47490.2 31.429 175 108 5 63 225 101 275 2.32e-19 89.0
Msa1348290 AT2G36660.1 27.240 279 150 8 64 329 25 263 3.72e-19 90.5
Msa1348290 AT2G36660.1 22.569 288 197 6 64 344 113 381 1.00e-14 77.0
Msa1348290 AT1G34140.1 26.087 322 205 9 64 371 32 334 5.99e-19 89.0
Msa1348290 AT4G24770.1 31.579 171 108 2 65 226 152 322 9.32e-19 87.4
Msa1348290 AT4G24770.2 31.579 171 108 2 65 226 152 322 9.32e-19 87.4
Msa1348290 AT2G37220.1 31.088 193 105 2 60 224 88 280 1.45e-18 86.3
Msa1348290 AT1G47500.2 31.429 175 108 5 63 225 103 277 4.62e-18 85.1
Msa1348290 AT5G50250.1 30.178 169 109 2 65 224 115 283 4.28e-16 79.0
Msa1348290 AT3G52380.1 25.688 218 130 5 150 361 118 309 8.76e-16 78.6
Msa1348290 AT3G52380.1 25.556 180 116 2 65 226 118 297 4.79e-14 73.6
Msa1348290 AT1G60000.1 31.461 178 112 4 54 224 79 253 3.21e-15 75.9
Msa1348290 AT3G04500.1 43.243 74 42 0 148 221 137 210 1.84e-14 73.2
Msa1348290 AT4G13860.1 45.714 70 38 0 150 219 5 74 5.73e-14 67.8
Msa1348290 AT3G52150.2 26.804 194 117 5 150 339 78 250 8.59e-14 71.6
Msa1348290 AT3G52150.2 28.000 200 125 5 41 224 57 253 1.14e-13 71.2
Msa1348290 AT3G52150.1 26.804 194 117 5 150 339 78 250 8.59e-14 71.6
Msa1348290 AT3G52150.1 28.000 200 125 5 41 224 57 253 1.14e-13 71.2
Msa1348290 AT4G13850.2 45.205 73 40 0 150 222 37 109 2.60e-13 67.8
Msa1348290 AT4G13850.1 45.205 73 40 0 150 222 37 109 2.90e-13 67.8
Msa1348290 AT4G13850.4 45.333 75 41 0 150 224 37 111 6.06e-13 66.2
Msa1348290 AT3G23830.2 45.455 77 42 0 150 226 37 113 8.45e-13 65.9
Msa1348290 AT3G23830.1 45.455 77 42 0 150 226 37 113 8.45e-13 65.9
Msa1348290 AT4G13850.3 45.333 75 41 0 150 224 37 111 1.19e-12 65.9
Msa1348290 AT5G04280.1 42.105 76 44 0 149 224 8 83 1.38e-12 68.9
Msa1348290 AT4G39260.3 38.095 84 51 1 148 230 6 89 4.02e-12 62.8
Msa1348290 AT1G60650.2 38.095 84 52 0 149 232 13 96 6.88e-11 63.5
Msa1348290 AT1G60650.1 38.095 84 52 0 149 232 13 96 6.88e-11 63.5
Msa1348290 AT4G39260.2 37.662 77 48 0 148 224 6 82 9.10e-11 59.7

Find 156 sgRNAs with CRISPR-Local

Find 676 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTGTTTCTGGCCTTTC+AGG 0.085771 tig0010294:+16449 Msa1348290:CDS
TTGAGTCAGGCTGCTGTTTC+TGG 0.090738 tig0010294:+16440 Msa1348290:CDS
CAGAGTGCTGGCCCTCTTGC+TGG 0.169521 tig0010294:+9778 Msa1348290:CDS
CTAACCTGTCATATCATTTA+TGG 0.187653 tig0010294:-12433 None:intergenic
GTTCAGAGCGGCAAAGGTTT+TGG 0.251697 tig0010294:+15599 Msa1348290:CDS
GATTGACATACATTGGAAAA+TGG 0.257034 tig0010294:+7889 Msa1348290:five_prime_UTR
TACATTGGAAAATGGGGATT+TGG 0.268774 tig0010294:+7897 Msa1348290:five_prime_UTR
CATATCATTTATGGCACTTT+GGG 0.283299 tig0010294:-12424 None:intergenic
GCAAATTTCCACACACCATT+TGG 0.296275 tig0010294:+7960 Msa1348290:five_prime_UTR
CTTGATTTGTGCAGTGTTCA+TGG 0.303013 tig0010294:+16276 Msa1348290:intron
CCAGTCGCGTTGTTGCCTTC+TGG 0.303794 tig0010294:+16621 Msa1348290:three_prime_UTR
TAGTGAGTACAACAGCATTT+TGG 0.310047 tig0010294:-12650 None:intergenic
TTACTGTTACAGTCCTCTTA+TGG 0.325857 tig0010294:+11219 Msa1348290:intron
TCATGCGCCGTGCAGGTAAA+TGG 0.340073 tig0010294:+12547 Msa1348290:intron
CATTGTCAATTCCATGCATT+GGG 0.344475 tig0010294:+15551 Msa1348290:CDS
ACTGGTCGCTCAAAAGGATA+TGG 0.356544 tig0010294:+12123 Msa1348290:CDS
TTGAAGTGGTTGTTGGTGAT+TGG 0.368909 tig0010294:-8014 None:intergenic
GTCAAGCACTAAAGGTGAAC+TGG 0.369112 tig0010294:+11609 Msa1348290:CDS
GTGTTGTAATTTATGTTGTT+TGG 0.375186 tig0010294:+16724 Msa1348290:three_prime_UTR
CAAATTTCCACACACCATTT+GGG 0.376222 tig0010294:+7961 Msa1348290:five_prime_UTR
AATGCTGTTGTACTCACTAA+TGG 0.376531 tig0010294:+12654 Msa1348290:CDS
CAGGTAAATGGCTGGGAAAT+AGG 0.380298 tig0010294:+12559 Msa1348290:intron
GCGGCAGCGGCGAGCATGCC+AGG 0.380318 tig0010294:-8307 None:intergenic
ACATTGGAAAATGGGGATTT+GGG 0.388221 tig0010294:+7898 Msa1348290:five_prime_UTR
GCAGTAGGAAGTATTTGATA+TGG 0.388435 tig0010294:-16359 None:intergenic
TTATTATCTGCAGTGATGCT+AGG 0.388780 tig0010294:+12082 Msa1348290:intron
GTACTCACTAATGGATCTTC+AGG 0.389743 tig0010294:+12663 Msa1348290:CDS
GCGCCAGCTTGCCTTGAGTC+AGG 0.397350 tig0010294:+16427 Msa1348290:CDS
CAGCCTGACTCAAGGCAAGC+TGG 0.400016 tig0010294:-16430 None:intergenic
TCATATCATTTATGGCACTT+TGG 0.401250 tig0010294:-12425 None:intergenic
TGGCCTAGCTCCTGCTTCAA+TGG 0.403772 tig0010294:+16502 Msa1348290:CDS
CTATACTGCCGCTGAGTTGT+TGG 0.405851 tig0010294:+16397 Msa1348290:CDS
TGAAGTGGTTGTTGGTGATT+GGG 0.413053 tig0010294:-8013 None:intergenic
ATTTGATATGGTTGTGCAGC+AGG 0.414607 tig0010294:-16347 None:intergenic
TGTTTCTTTCCGTGATCATC+AGG 0.420333 tig0010294:+12149 Msa1348290:CDS
AGAGTGCTGGCCCTCTTGCT+GGG 0.424228 tig0010294:+9779 Msa1348290:CDS
ATAGGCAAATAAGATGCAAT+TGG 0.425248 tig0010294:+12577 Msa1348290:CDS
CCCGTTGGTTCGTTCCCAAA+TGG 0.428258 tig0010294:-7975 None:intergenic
CAAGCTCTTCTTCAAATGTC+TGG 0.430252 tig0010294:+16473 Msa1348290:CDS
CACAAAACTGGTCGCTCAAA+AGG 0.430477 tig0010294:+12117 Msa1348290:CDS
CCATTGTCAATTCCATGCAT+TGG 0.438850 tig0010294:+15550 Msa1348290:CDS
TTCATAGTCTTCCCACGAAC+CGG 0.445671 tig0010294:-15683 None:intergenic
GGCCTAGCTCCTGCTTCAAT+GGG 0.448821 tig0010294:+16503 Msa1348290:CDS
GGTAGCAAACCAACTCCTCC+TGG 0.452864 tig0010294:+16299 Msa1348290:CDS
ATTGACATACATTGGAAAAT+GGG 0.455792 tig0010294:+7890 Msa1348290:five_prime_UTR
TTGATTTGTGCAGTGTTCAT+GGG 0.457579 tig0010294:+16277 Msa1348290:intron
TTATGTTGTTTGGTCTAAGA+GGG 0.463548 tig0010294:+16734 Msa1348290:three_prime_UTR
TGTGCAGCAGGAGGAGGTAA+TGG 0.463607 tig0010294:-16335 None:intergenic
CGCCGCTGCCGCCATGACTC+AGG 0.466522 tig0010294:+8318 Msa1348290:CDS
GCGCCGTGCAGGTAAATGGC+TGG 0.469479 tig0010294:+12551 Msa1348290:intron
TTTATGTTGTTTGGTCTAAG+AGG 0.472202 tig0010294:+16733 Msa1348290:three_prime_UTR
GCATCTCAAGCCATGTATGA+TGG 0.473914 tig0010294:+16539 Msa1348290:CDS
TCACGACACGAAAGGAAAAC+AGG 0.475355 tig0010294:-16905 None:intergenic
GTTATGTGGGATCACAAAAC+TGG 0.476499 tig0010294:+12105 Msa1348290:CDS
GGCAGATTTCCACTTGGTAC+AGG 0.476764 tig0010294:-9422 None:intergenic
CAGATATGGTCAAGCACTAA+AGG 0.481421 tig0010294:+11601 Msa1348290:intron
GATTAGATTGAAGTGGTTGT+TGG 0.483030 tig0010294:-8021 None:intergenic
AACCTTTGCCGCTCTGAACT+CGG 0.485345 tig0010294:-15595 None:intergenic
GAGTTTATACCCATTGAAGC+AGG 0.490298 tig0010294:-16512 None:intergenic
CCATTTGGGAACGAACCAAC+GGG 0.492372 tig0010294:+7975 Msa1348290:five_prime_UTR
ATGGCCATTCAGATGGCTAA+TGG 0.493306 tig0010294:+15656 Msa1348290:CDS
GGGCATATGCTAATAGCAGC+AGG 0.497780 tig0010294:+11630 Msa1348290:CDS
CACATAATAACTTACATCAT+GGG 0.500585 tig0010294:-14676 None:intergenic
ATTGAATAACCTGGATGGGA+TGG 0.501221 tig0010294:-8045 None:intergenic
TATCAAATACTTCCTACTGC+AGG 0.501942 tig0010294:+16362 Msa1348290:CDS
CAAGCTCATACGAAAAGAAA+AGG 0.505952 tig0010294:+9804 Msa1348290:CDS
TAGGCAAATAAGATGCAATT+GGG 0.506393 tig0010294:+12578 Msa1348290:CDS
AAAGTTGCATCAGTAACCTC+TGG 0.509996 tig0010294:-11817 None:intergenic
TATTATCTGCAGTGATGCTA+GGG 0.513071 tig0010294:+12083 Msa1348290:intron
CGCCGTGCAGGTAAATGGCT+GGG 0.514723 tig0010294:+12552 Msa1348290:intron
AGAGAGAGATTGACATACAT+TGG 0.516147 tig0010294:+7882 Msa1348290:five_prime_UTR
CAGCGGCGAGCATGCCAGGA+TGG 0.517214 tig0010294:-8303 None:intergenic
CCAGAAGGCAACAACGCGAC+TGG 0.517663 tig0010294:-16621 None:intergenic
GAAGCTGTCCCAGGAGGAGT+TGG 0.517974 tig0010294:-16308 None:intergenic
GTCCGAGTTCAGAGCGGCAA+AGG 0.522688 tig0010294:+15593 Msa1348290:CDS
AATGGATTTGAAGCTGTCCC+AGG 0.523245 tig0010294:-16317 None:intergenic
ACATAAACTGTGGTGTATGA+AGG 0.527956 tig0010294:-14642 None:intergenic
GTAGTCCACAAAACCATAAG+AGG 0.529746 tig0010294:-11232 None:intergenic
ATCTAATCTCCATCCCATCC+AGG 0.529776 tig0010294:+8036 Msa1348290:five_prime_UTR
AGATGCAATTGGGCAACTAA+AGG 0.529820 tig0010294:+12588 Msa1348290:CDS
TACCTGAGTCATGGCGGCAG+CGG 0.531709 tig0010294:-8320 None:intergenic
GTCGCGTTGTTGCCTTCTGG+TGG 0.532371 tig0010294:+16624 Msa1348290:three_prime_UTR
CCAAGTGGAAATCTGCCTCC+TGG 0.532408 tig0010294:+9428 Msa1348290:CDS
AGAGTGGGAGTGGATGGAGA+TGG 0.532733 tig0010294:+7832 None:intergenic
GCGCTGCAGATGCTCGATCA+TGG 0.535729 tig0010294:-11254 None:intergenic
GTGGATGGAGATGGATTGAG+AGG 0.539757 tig0010294:+7841 None:intergenic
ACCATTTGGGAACGAACCAA+CGG 0.539831 tig0010294:+7974 Msa1348290:five_prime_UTR
TCTAAGAGGGTTTAATGACT+CGG 0.540217 tig0010294:+16747 Msa1348290:three_prime_UTR
GCAGTGATGCTAGGGTTATG+TGG 0.542201 tig0010294:+12091 Msa1348290:intron
TATGGTTGTGCAGCAGGAGG+AGG 0.545725 tig0010294:-16341 None:intergenic
CTTGCAATAATGACATTACA+TGG 0.546222 tig0010294:+11276 Msa1348290:CDS
ATGTACTATCGTTAACGTGT+TGG 0.547750 tig0010294:+16593 Msa1348290:exon
TCATACACCACAGTTTATGT+TGG 0.550873 tig0010294:+14645 Msa1348290:CDS
TGTTGGTGATTTGAGTCCAG+AGG 0.552793 tig0010294:+11801 Msa1348290:CDS
AGCAGCAGGGAGGATACCTC+AGG 0.556360 tig0010294:+11644 Msa1348290:CDS
ATGAGCTTGCACCCAGCAAG+AGG 0.559508 tig0010294:-9790 None:intergenic
CTTCAAATGTCTGGACAGCA+TGG 0.559553 tig0010294:+16482 Msa1348290:CDS
GGAAAATTGAATAACCTGGA+TGG 0.559620 tig0010294:-8050 None:intergenic
AGCAGCAATGGCCATTCAGA+TGG 0.559699 tig0010294:+15649 Msa1348290:CDS
TACTCACGAGGAAGCAGCAA+TGG 0.566016 tig0010294:+15637 Msa1348290:CDS
ATCAAATACTTCCTACTGCA+GGG 0.566020 tig0010294:+16363 Msa1348290:CDS
CTAAGAGGGTTTAATGACTC+GGG 0.568338 tig0010294:+16748 Msa1348290:three_prime_UTR
GCCATGTATGATGGATATGC+TGG 0.570497 tig0010294:+16548 Msa1348290:CDS
ACTCAGCGGCAGTATAGCCT+TGG 0.571742 tig0010294:-16391 None:intergenic
CAGTGATGCTAGGGTTATGT+GGG 0.574161 tig0010294:+12092 Msa1348290:intron
TACCCATTGAAGCAGGAGCT+AGG 0.575152 tig0010294:-16505 None:intergenic
GAAAATTGAATAACCTGGAT+GGG 0.576085 tig0010294:-8049 None:intergenic
TCAGATGGCTAATGGAAGAC+CGG 0.578621 tig0010294:+15664 Msa1348290:CDS
AATTGGGCAACTAAAGGAGC+TGG 0.579883 tig0010294:+12594 Msa1348290:CDS
TATTGCTGCTCGACGCCCGT+TGG 0.579985 tig0010294:-7990 None:intergenic
AGTGCCATAAATGATATGAC+AGG 0.580583 tig0010294:+12429 Msa1348290:CDS
GGATGGAGATTAGATTGAAG+TGG 0.585432 tig0010294:-8028 None:intergenic
CAACAGATGTATCACCATCC+TGG 0.588864 tig0010294:+8289 Msa1348290:CDS
GAAGAAGAGCTTGTCCTGAA+AGG 0.590043 tig0010294:-16463 None:intergenic
AATCCAACACTCACACACTA+CGG 0.592155 tig0010294:-9469 None:intergenic
TCTTCCATTAGCCATCTGAA+TGG 0.592211 tig0010294:-15660 None:intergenic
TTGACATACATTGGAAAATG+GGG 0.593617 tig0010294:+7891 Msa1348290:five_prime_UTR
CATGCAGAAGCATCAAAACC+AGG 0.594532 tig0010294:-9446 None:intergenic
CCTTGGTTCATCCCTGCAGT+AGG 0.595601 tig0010294:-16374 None:intergenic
GTAGCAAACCAACTCCTCCT+GGG 0.595678 tig0010294:+16300 Msa1348290:CDS
CAATAATGACATTACATGGA+CGG 0.597000 tig0010294:+11280 Msa1348290:CDS
GTGAGACTATACGAGAAGAA+AGG 0.598318 tig0010294:+7922 Msa1348290:five_prime_UTR
ACCAGCATATCCATCATACA+TGG 0.598383 tig0010294:-16549 None:intergenic
GCTAATGGAAGACCGGTTCG+TGG 0.602235 tig0010294:+15671 Msa1348290:CDS
TTGAGTGCGTACCTGAGTCA+TGG 0.608383 tig0010294:-8329 None:intergenic
CAACGCAACTTGCCACCAGA+AGG 0.611006 tig0010294:-16636 None:intergenic
AGAAACAGCAGCCTGACTCA+AGG 0.611320 tig0010294:-16438 None:intergenic
CCAATGCATGGAATTGACAA+TGG 0.612478 tig0010294:-15550 None:intergenic
CCAGGAGGCAGATTTCCACT+TGG 0.614545 tig0010294:-9428 None:intergenic
TCAAGCACTAAAGGTGAACT+GGG 0.615031 tig0010294:+11610 Msa1348290:CDS
TGATATGGTTGTGCAGCAGG+AGG 0.615436 tig0010294:-16344 None:intergenic
ATTAAATTAATATGCAACAG+AGG 0.616865 tig0010294:+8197 Msa1348290:exon
GGTTCGTGGGAAGACTATGA+AGG 0.622745 tig0010294:+15685 Msa1348290:CDS
TGAGCTTGCACCCAGCAAGA+GGG 0.626119 tig0010294:-9789 None:intergenic
CTAATGGAAGACCGGTTCGT+GGG 0.628842 tig0010294:+15672 Msa1348290:CDS
TAAACAATACCTGATGATCA+CGG 0.630743 tig0010294:-12158 None:intergenic
ACATAATAACTTACATCATG+GGG 0.631409 tig0010294:-14675 None:intergenic
GTTCGTTCCCAAATGGTGTG+TGG 0.635806 tig0010294:-7968 None:intergenic
TGATTTGTGCAGTGTTCATG+GGG 0.641600 tig0010294:+16278 Msa1348290:intron
TGGGCAACTAAAGGAGCTGG+TGG 0.644576 tig0010294:+12597 Msa1348290:CDS
TTATCTTGTCACGACACGAA+AGG 0.644760 tig0010294:-16913 None:intergenic
ATTGTCAATTCCATGCATTG+GGG 0.655280 tig0010294:+15552 Msa1348290:CDS
AATAACTTACATCATGGGGA+AGG 0.662148 tig0010294:-14671 None:intergenic
GGCATATGCTAATAGCAGCA+GGG 0.664924 tig0010294:+11631 Msa1348290:CDS
TTGTCAATTCCATGCATTGG+GGG 0.671288 tig0010294:+15553 Msa1348290:CDS
TAGATGGAGCCTGTACCAAG+TGG 0.679006 tig0010294:+9413 Msa1348290:intron
CTGATAAGCCAACAACTCAG+CGG 0.687286 tig0010294:-16405 None:intergenic
AAGGTTGCCAACATAAACTG+TGG 0.696175 tig0010294:-14652 None:intergenic
GGATTTGAAGCTGTCCCAGG+AGG 0.710431 tig0010294:-16314 None:intergenic
CCTACTGCAGGGATGAACCA+AGG 0.714250 tig0010294:+16374 Msa1348290:CDS
AGGTCAAGATAACAGCAATG+AGG 0.720049 tig0010294:+14602 Msa1348290:CDS
AGTGCGTACCTGAGTCATGG+CGG 0.723312 tig0010294:-8326 None:intergenic
GCAGAAGCATCAAAACCAGG+AGG 0.745439 tig0010294:-9443 None:intergenic
GAGGAGGTCCGAGTTCAGAG+CGG 0.760138 tig0010294:+15587 Msa1348290:CDS
TGTCAGATACAATACTCACG+AGG 0.768476 tig0010294:+15625 Msa1348290:CDS
ATATGCTAATAGCAGCAGGG+AGG 0.768819 tig0010294:+11634 Msa1348290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTACAGTTAATTTTTT+AGG + tig0010294:8565-8584 Msa1348290:intron 10.0%
!! AAAAAAAAAAAAAAACTAGA+TGG - tig0010294:8675-8694 None:intergenic 10.0%
!! AAACAAAAATAATATGAAAT+TGG - tig0010294:8763-8782 None:intergenic 10.0%
!! ATAACAAATATTAAAAATTG+GGG - tig0010294:9380-9399 None:intergenic 10.0%
!! ATACTAATTAAAATATATGA+AGG + tig0010294:12909-12928 Msa1348290:intron 10.0%
!!! TAAACTTCTAATATTATTTT+TGG + tig0010294:14374-14393 Msa1348290:intron 10.0%
!!! AACAATGATTTTTCAATAAA+AGG - tig0010294:8891-8910 None:intergenic 15.0%
!! TTACAATTTGTATTATTAGT+CGG + tig0010294:9221-9240 Msa1348290:intron 15.0%
!!! TAAATAATGATGCTTTTAAT+TGG + tig0010294:9602-9621 Msa1348290:intron 15.0%
!!! TCTTTTTAAAATGTTTGTTT+TGG + tig0010294:10001-10020 Msa1348290:intron 15.0%
!!! AATATAATTCCATTTTTAGT+TGG - tig0010294:10128-10147 None:intergenic 15.0%
!! GAAAATAGTTTATAAAGATT+AGG - tig0010294:10388-10407 None:intergenic 15.0%
!! AAGGATTAATAAATAGATTT+GGG - tig0010294:12718-12737 None:intergenic 15.0%
!! AGAATATGTATTATAGATAA+AGG + tig0010294:12800-12819 Msa1348290:intron 15.0%
!!! TAGACTAGTTTTTTTTAATT+GGG - tig0010294:14012-14031 None:intergenic 15.0%
!!! ATAGACTAGTTTTTTTTAAT+TGG - tig0010294:14013-14032 None:intergenic 15.0%
!! AAATAGAAAAGTTAAAGTAA+GGG + tig0010294:14074-14093 Msa1348290:intron 15.0%
!! TTTGTCAAAATGTAAAAAAA+AGG - tig0010294:14888-14907 None:intergenic 15.0%
!! ATTAAATTAATATGCAACAG+AGG + tig0010294:8197-8216 Msa1348290:exon 20.0%
!! CAAACATTGAGTATATATTA+TGG - tig0010294:8373-8392 None:intergenic 20.0%
!! TGAATACAAAATAAAAAGCA+TGG - tig0010294:8546-8565 None:intergenic 20.0%
!!! GAAAAATCATTGTTAGTTTT+TGG + tig0010294:8897-8916 Msa1348290:intron 20.0%
!!! TTCTTGATTAAAGAAACTTT+TGG - tig0010294:9081-9100 None:intergenic 20.0%
!!! TATTTTGGAAATTTTGTAGA+TGG + tig0010294:9397-9416 Msa1348290:intron 20.0%
!!! CCATATTTTGTGAAAAATTT+AGG - tig0010294:9952-9971 None:intergenic 20.0%
!!! CCTAAATTTTTCACAAAATA+TGG + tig0010294:9949-9968 Msa1348290:intron 20.0%
!! AAAAATTCATTACAGTGAAA+AGG - tig0010294:10255-10274 None:intergenic 20.0%
!! AATAGTTTATAAAGATTAGG+TGG - tig0010294:10385-10404 None:intergenic 20.0%
!!! CTAATATCATGTTAGATTTT+TGG + tig0010294:10504-10523 Msa1348290:intron 20.0%
!!! ACTGACATATTTTTCTTTAT+TGG - tig0010294:10718-10737 None:intergenic 20.0%
!!! TGTTCAATTTGTGTTTATTT+TGG + tig0010294:11318-11337 Msa1348290:intron 20.0%
!! CTGCATAATTAAAACAATAT+CGG - tig0010294:11505-11524 None:intergenic 20.0%
!!! GATTTTGAACTAGAAATTAA+AGG - tig0010294:11760-11779 None:intergenic 20.0%
!!! ATAGGTATATTCTTTTTTGA+TGG + tig0010294:11928-11947 Msa1348290:intron 20.0%
!!! GTTTCAATGATTTTTTTGTA+AGG - tig0010294:12324-12343 None:intergenic 20.0%
!! CAAGGATTAATAAATAGATT+TGG - tig0010294:12719-12738 None:intergenic 20.0%
!! CCAACATAATAGTTTAAATA+TGG - tig0010294:12851-12870 None:intergenic 20.0%
!! CCATATTTAAACTATTATGT+TGG + tig0010294:12848-12867 Msa1348290:intron 20.0%
!! CATTACCTTTATATAGTAAA+TGG + tig0010294:12974-12993 Msa1348290:intron 20.0%
!! GAAATAGAAAAGTTAAAGTA+AGG + tig0010294:14073-14092 Msa1348290:intron 20.0%
!! AAAGACACTTTCATTAAATA+TGG + tig0010294:14103-14122 Msa1348290:intron 20.0%
!! AAGACACTTTCATTAAATAT+GGG + tig0010294:14104-14123 Msa1348290:intron 20.0%
!! TTTATAGAGTTATTGAATGA+TGG + tig0010294:14445-14464 Msa1348290:intron 20.0%
!!! TTAAGCTTTAAACATAGTTT+TGG + tig0010294:14725-14744 Msa1348290:intron 20.0%
!!! TGTTTTTTCTATCAATGTTT+TGG + tig0010294:14783-14802 Msa1348290:intron 20.0%
!! TTTGTAAATAAAGTCAGAAA+AGG - tig0010294:15359-15378 None:intergenic 20.0%
!!! ATATCAAAAGTTATCACTTT+TGG + tig0010294:15972-15991 Msa1348290:intron 20.0%
!!! TATCAAAAGTTATCACTTTT+GGG + tig0010294:15973-15992 Msa1348290:intron 20.0%
!!! AATTCCATTTCAAGTAAAAT+TGG + tig0010294:16050-16069 Msa1348290:intron 20.0%
!!! ATTCCATTTCAAGTAAAATT+GGG + tig0010294:16051-16070 Msa1348290:intron 20.0%
!! TAAAAAAAAAAGGAAAGAGA+AGG - tig0010294:16666-16685 None:intergenic 20.0%
!!! CTTTCCTTTTTTTTTTATTG+CGG + tig0010294:16669-16688 Msa1348290:three_prime_UTR 20.0%
!! AATACCGCAATAAAAAAAAA+AGG - tig0010294:16676-16695 None:intergenic 20.0%
! ATTGACATACATTGGAAAAT+GGG + tig0010294:7890-7909 Msa1348290:five_prime_UTR 25.0%
!! AGTATATATTATGGTGGAAA+TGG - tig0010294:8364-8383 None:intergenic 25.0%
! ACATTGAGTATATATTATGG+TGG - tig0010294:8370-8389 None:intergenic 25.0%
! ATATATCAATGGTTAAGACT+GGG - tig0010294:8597-8616 None:intergenic 25.0%
! TAACCATTGATATATCAGTA+AGG + tig0010294:8602-8621 Msa1348290:intron 25.0%
! ATTCCTTACTGATATATCAA+TGG - tig0010294:8608-8627 None:intergenic 25.0%
! AATAATATGAAATTGGACAG+CGG - tig0010294:8756-8775 None:intergenic 25.0%
!! TGTTACAGAATTATTTTCGT+TGG + tig0010294:9156-9175 Msa1348290:intron 25.0%
!! TATTTTCGTTGGTCATTATA+TGG + tig0010294:9167-9186 Msa1348290:intron 25.0%
! AAACTGTTTACACAATTGAT+TGG + tig0010294:9197-9216 Msa1348290:intron 25.0%
!!! TCGGATAATTTGTTTTTTAG+AGG + tig0010294:9240-9259 Msa1348290:intron 25.0%
!! TTTTACTATCAACGAAAGAT+TGG + tig0010294:9284-9303 Msa1348290:intron 25.0%
!! AAAAAGAAATTTGCTTCTAC+AGG - tig0010294:9583-9602 None:intergenic 25.0%
!!! AGACAAGGGTATTTAAAAAT+AGG - tig0010294:9911-9930 None:intergenic 25.0%
!! CTTATAGTTGTTTAAGACAA+GGG - tig0010294:9925-9944 None:intergenic 25.0%
!! TTTCACTCAAATTTTCTTTC+TGG + tig0010294:10027-10046 Msa1348290:intron 25.0%
!! TTCACTCAAATTTTCTTTCT+GGG + tig0010294:10028-10047 Msa1348290:intron 25.0%
! TGAATTAGATTAATAGGGAT+AGG - tig0010294:10161-10180 None:intergenic 25.0%
! GGTCTTGAATTAGATTAATA+GGG - tig0010294:10166-10185 None:intergenic 25.0%
! AGGTCTTGAATTAGATTAAT+AGG - tig0010294:10167-10186 None:intergenic 25.0%
!! ATTTTTCATTGAATCCAAGA+CGG + tig0010294:10269-10288 Msa1348290:intron 25.0%
! GATTCAAAATTCTAAGCATT+GGG - tig0010294:10326-10345 None:intergenic 25.0%
! TGATTCAAAATTCTAAGCAT+TGG - tig0010294:10327-10346 None:intergenic 25.0%
! TGATATTAGAGTATGTTGAT+AGG - tig0010294:10493-10512 None:intergenic 25.0%
!! TCTAGCATTGAAAAGAAATA+AGG - tig0010294:10610-10629 None:intergenic 25.0%
! AAGAAAAATATGTCAGTACT+TGG + tig0010294:10721-10740 Msa1348290:intron 25.0%
! ATAGTGTAAATCTGTAAGAT+AGG + tig0010294:10908-10927 Msa1348290:intron 25.0%
!! GTTATAACTTGTAAGTCAAT+TGG + tig0010294:11035-11054 Msa1348290:intron 25.0%
! AGAAACCAAAAAGTAAAGAA+CGG - tig0010294:11167-11186 None:intergenic 25.0%
!!! ATTTCTAGTTCAAAATCATC+AGG + tig0010294:11763-11782 Msa1348290:intron 25.0%
!!! TTTCTAGTTCAAAATCATCA+GGG + tig0010294:11764-11783 Msa1348290:intron 25.0%
! CAAAAAAATGTAATGAAAGG+GGG - tig0010294:11898-11917 None:intergenic 25.0%
! CCAAAAAAATGTAATGAAAG+GGG - tig0010294:11899-11918 None:intergenic 25.0%
! CCCAAAAAAATGTAATGAAA+GGG - tig0010294:11900-11919 None:intergenic 25.0%
!!! CCCTTTCATTACATTTTTTT+GGG + tig0010294:11897-11916 Msa1348290:intron 25.0%
! ACCCAAAAAAATGTAATGAA+AGG - tig0010294:11901-11920 None:intergenic 25.0%
! TTGAAGAAAGATAGATGATA+TGG + tig0010294:11983-12002 Msa1348290:intron 25.0%
! TGAAGAAAGATAGATGATAT+GGG + tig0010294:11984-12003 Msa1348290:intron 25.0%
!!! AATTTTGAGAGCAAAGATAA+TGG - tig0010294:12255-12274 None:intergenic 25.0%
! ATTATTAGTACAGTTCATAC+TGG - tig0010294:12356-12375 None:intergenic 25.0%
! TCTTTATGCAATTAATATGC+AGG + tig0010294:12398-12417 Msa1348290:intron 25.0%
! ATCCTTGAAAATATAGATGA+AGG + tig0010294:12732-12751 Msa1348290:intron 25.0%
! ATTTAAACTATTATGTTGGC+TGG + tig0010294:12852-12871 Msa1348290:intron 25.0%
! AATGTTTGTGCATAACAAAT+AGG - tig0010294:12958-12977 None:intergenic 25.0%
! TTGCTTGTAATAATTCATTC+CGG - tig0010294:13054-13073 None:intergenic 25.0%
! AGATATAGTTGTTGTGAATT+CGG + tig0010294:13099-13118 Msa1348290:intron 25.0%
!!! TTCTTTATCTTGTTGTTCTT+TGG - tig0010294:13262-13281 None:intergenic 25.0%
!!! AAACAATTTGTTAACACCTT+GGG - tig0010294:13510-13529 None:intergenic 25.0%
!! TCTAGAATATAACCCTAAAA+GGG + tig0010294:13536-13555 Msa1348290:intron 25.0%
! CATTTATACATGTTTAATCC+TGG - tig0010294:13871-13890 None:intergenic 25.0%
! ACCTTTATTAGTGTGTTTAA+AGG + tig0010294:14250-14269 Msa1348290:intron 25.0%
! CCTTTATTAGTGTGTTTAAA+GGG + tig0010294:14251-14270 Msa1348290:intron 25.0%
!!! TTTGTTATGTGTTTTACAGA+TGG + tig0010294:14579-14598 Msa1348290:intron 25.0%
! ACATAATAACTTACATCATG+GGG - tig0010294:14678-14697 None:intergenic 25.0%
! CACATAATAACTTACATCAT+GGG - tig0010294:14679-14698 None:intergenic 25.0%
! CATGATGTAAGTTATTATGT+GGG + tig0010294:14678-14697 Msa1348290:intron 25.0%
!!! GCAAAAAAGGCTTATTTTTT+TGG - tig0010294:15019-15038 None:intergenic 25.0%
!!! CAAAATATTTTTTGGTGTTG+CGG + tig0010294:15375-15394 Msa1348290:intron 25.0%
! ACAGTTGTAAGTTATATATC+CGG - tig0010294:15499-15518 None:intergenic 25.0%
!! TGTTTAAGCCTTCTTTTAAA+AGG - tig0010294:15809-15828 None:intergenic 25.0%
!! ATCTAGTTTCAGGTAAAATA+GGG - tig0010294:15844-15863 None:intergenic 25.0%
!! AATCTAGTTTCAGGTAAAAT+AGG - tig0010294:15845-15864 None:intergenic 25.0%
! TTCTGTTCATATACGAAATT+GGG - tig0010294:15951-15970 None:intergenic 25.0%
! TTTCTGTTCATATACGAAAT+TGG - tig0010294:15952-15971 None:intergenic 25.0%
!!! TTTTTTTTATTGCGGTATTG+TGG + tig0010294:16677-16696 Msa1348290:three_prime_UTR 25.0%
! GTGTTGTAATTTATGTTGTT+TGG + tig0010294:16724-16743 Msa1348290:three_prime_UTR 25.0%
GATTGACATACATTGGAAAA+TGG + tig0010294:7889-7908 Msa1348290:five_prime_UTR 30.0%
TTGACATACATTGGAAAATG+GGG + tig0010294:7891-7910 Msa1348290:five_prime_UTR 30.0%
GAAAATTGAATAACCTGGAT+GGG - tig0010294:8052-8071 None:intergenic 30.0%
TGAAAATGAAAATCGCGAAT+CGG - tig0010294:8091-8110 None:intergenic 30.0%
! TTGATTTCTGAAGAAGAAAG+AGG - tig0010294:8162-8181 None:intergenic 30.0%
!!! AGCTCAAATTGATTTTTAGC+TGG + tig0010294:8412-8431 Msa1348290:intron 30.0%
GATATATCAATGGTTAAGAC+TGG - tig0010294:8598-8617 None:intergenic 30.0%
AGTAATCTATTGTTATCGTC+TGG + tig0010294:8704-8723 Msa1348290:intron 30.0%
!! ATGGATTTTAGAGGAAGAAA+TGG + tig0010294:8857-8876 Msa1348290:intron 30.0%
!! AAATGTTGAGTTGTTTCTGT+TGG - tig0010294:9057-9076 None:intergenic 30.0%
! CACAAATGGTTATTTCACAA+TGG + tig0010294:9127-9146 Msa1348290:intron 30.0%
GGTAGAAATTATGTACCAAA+AGG - tig0010294:9562-9581 None:intergenic 30.0%
ATTGTGAGAGATAAGTTTGA+TGG + tig0010294:9631-9650 Msa1348290:intron 30.0%
GGATTAATTAGGTATCAAAG+TGG - tig0010294:9685-9704 None:intergenic 30.0%
CACAAAACTTCGGATTAATT+AGG - tig0010294:9696-9715 None:intergenic 30.0%
! TAACTGAAAGCACAAAACTT+CGG - tig0010294:9706-9725 None:intergenic 30.0%
! TTTTGTGCTTTCAGTTATGT+AGG + tig0010294:9709-9728 Msa1348290:intron 30.0%
! CCTTATAGTTGTTTAAGACA+AGG - tig0010294:9926-9945 None:intergenic 30.0%
CCTTGTCTTAAACAACTATA+AGG + tig0010294:9923-9942 Msa1348290:intron 30.0%
! TCACTCAAATTTTCTTTCTG+GGG + tig0010294:10029-10048 Msa1348290:intron 30.0%
TTGTAAGGACAAGTTATACA+AGG - tig0010294:10058-10077 None:intergenic 30.0%
!!! TTCCATTTTTAGTTGGAGAA+GGG - tig0010294:10121-10140 None:intergenic 30.0%
!!! ATTCCATTTTTAGTTGGAGA+AGG - tig0010294:10122-10141 None:intergenic 30.0%
TTAGATTAATAGGGATAGGT+CGG - tig0010294:10157-10176 None:intergenic 30.0%
GGAATACATCATTCTTGAAA+TGG - tig0010294:10234-10253 None:intergenic 30.0%
! TGCTATAAATTTTTCCGTCT+TGG - tig0010294:10286-10305 None:intergenic 30.0%
! ACCTAATCTCTTTTCAATGA+GGG + tig0010294:10410-10429 Msa1348290:intron 30.0%
ATAGTATACTAGGCATAAGA+GGG - tig0010294:10457-10476 None:intergenic 30.0%
AATAGTATACTAGGCATAAG+AGG - tig0010294:10458-10477 None:intergenic 30.0%
CTTATGCCTAGTATACTATT+TGG + tig0010294:10458-10477 Msa1348290:intron 30.0%
! TTCTTTTCAATGCTAGACTT+TGG + tig0010294:10613-10632 Msa1348290:intron 30.0%
TCTACAAGATAAAGATCTCA+AGG - tig0010294:10651-10670 None:intergenic 30.0%
TTGAGATCTTTATCTTGTAG+AGG + tig0010294:10650-10669 Msa1348290:intron 30.0%
! TACTTGGCACAAAATTTGTT+TGG + tig0010294:10737-10756 Msa1348290:intron 30.0%
CTTACAGATTTACACTATCA+AGG - tig0010294:10906-10925 None:intergenic 30.0%
AGAAAATATAGCTGCTAAGA+AGG + tig0010294:10984-11003 Msa1348290:intron 30.0%
GAAACCAAAAAGTAAAGAAC+GGG - tig0010294:11166-11185 None:intergenic 30.0%
!!! ATGTGTTTTTTTTCCGTTGT+TGG + tig0010294:11191-11210 Msa1348290:intron 30.0%
AACAGTAATTTCACCAACAA+CGG - tig0010294:11207-11226 None:intergenic 30.0%
CTTGCAATAATGACATTACA+TGG + tig0010294:11276-11295 Msa1348290:CDS 30.0%
CAATAATGACATTACATGGA+CGG + tig0010294:11280-11299 Msa1348290:CDS 30.0%
GAATGCAAATATCATCCTAA+TGG + tig0010294:11435-11454 Msa1348290:intron 30.0%
TTAATTATGCAGTCTTGACA+AGG + tig0010294:11513-11532 Msa1348290:intron 30.0%
TAATTATGCAGTCTTGACAA+GGG + tig0010294:11514-11533 Msa1348290:intron 30.0%
TGTGATGTTGCTATGTATAA+AGG - tig0010294:11552-11571 None:intergenic 30.0%
!!! GTTTTTTCCATTTGCAGATA+TGG + tig0010294:11587-11606 Msa1348290:intron 30.0%
!! AATAGATGGGTTGCATTTAA+AGG - tig0010294:11673-11692 None:intergenic 30.0%
CATCAAAACCAACAATAGAT+GGG - tig0010294:11686-11705 None:intergenic 30.0%
TCATCAAAACCAACAATAGA+TGG - tig0010294:11687-11706 None:intergenic 30.0%
!! GTTTTGATGATTTTGCTTCT+CGG + tig0010294:11697-11716 Msa1348290:intron 30.0%
!! TTTTGATGATTTTGCTTCTC+GGG + tig0010294:11698-11717 Msa1348290:intron 30.0%
!!! CCCCTTTCATTACATTTTTT+TGG + tig0010294:11896-11915 Msa1348290:intron 30.0%
!!! ATTACATTTTTTTGGGTCAC+TGG + tig0010294:11904-11923 Msa1348290:intron 30.0%
AATATTGTAGTCCTTGTTAG+TGG + tig0010294:11953-11972 Msa1348290:intron 30.0%
GAAGAAAGATAGATGATATG+GGG + tig0010294:11985-12004 Msa1348290:intron 30.0%
AAGAAAGATAGATGATATGG+GGG + tig0010294:11986-12005 Msa1348290:intron 30.0%
!!! TTGCAAGACATTTTGGTTTT+TGG + tig0010294:12036-12055 Msa1348290:intron 30.0%
TAAACAATACCTGATGATCA+CGG - tig0010294:12161-12180 None:intergenic 30.0%
! AGCAAAGATAATGGTCTTTA+AGG - tig0010294:12246-12265 None:intergenic 30.0%
CTAATTCATGTAGCTAAACA+TGG - tig0010294:12284-12303 None:intergenic 30.0%
!! GTACTAATAATTTGCTGAAC+TGG + tig0010294:12365-12384 Msa1348290:intron 30.0%
CATATCATTTATGGCACTTT+GGG - tig0010294:12427-12446 None:intergenic 30.0%
TCATATCATTTATGGCACTT+TGG - tig0010294:12428-12447 None:intergenic 30.0%
CTAACCTGTCATATCATTTA+TGG - tig0010294:12436-12455 None:intergenic 30.0%
! AGAATAGAAGCATAACAACA+GGG - tig0010294:12494-12513 None:intergenic 30.0%
! AAGAATAGAAGCATAACAAC+AGG - tig0010294:12495-12514 None:intergenic 30.0%
ATAGGCAAATAAGATGCAAT+TGG + tig0010294:12577-12596 Msa1348290:CDS 30.0%
TAGGCAAATAAGATGCAATT+GGG + tig0010294:12578-12597 Msa1348290:CDS 30.0%
! TGCCTTCATCTATATTTTCA+AGG - tig0010294:12737-12756 None:intergenic 30.0%
TGGAAATTGCTAGAAATTCA+TGG + tig0010294:12872-12891 Msa1348290:intron 30.0%
CCACTCCATTTACTATATAA+AGG - tig0010294:12982-13001 None:intergenic 30.0%
CCTTTATATAGTAAATGGAG+TGG + tig0010294:12979-12998 Msa1348290:intron 30.0%
GATATAGTTGTTGTGAATTC+GGG + tig0010294:13100-13119 Msa1348290:intron 30.0%
!! GAAACAATTTGTTAACACCT+TGG - tig0010294:13511-13530 None:intergenic 30.0%
!! TAGGGTTATATTCTAGAGTT+AGG - tig0010294:13533-13552 None:intergenic 30.0%
!! CTCTAGAATATAACCCTAAA+AGG + tig0010294:13535-13554 Msa1348290:intron 30.0%
!! AATTTTTGACCCATTTGTTG+GGG - tig0010294:13814-13833 None:intergenic 30.0%
! CAATTTTTGACCCATTTGTT+GGG - tig0010294:13815-13834 None:intergenic 30.0%
TTAGTCATGGAGGATAATTT+AGG - tig0010294:14038-14057 None:intergenic 30.0%
TATCCTCCATGACTAAAAAA+TGG + tig0010294:14042-14061 Msa1348290:intron 30.0%
!!! ATGACTCCATTTTTTAGTCA+TGG - tig0010294:14051-14070 None:intergenic 30.0%
CCCTTTAAACACACTAATAA+AGG - tig0010294:14254-14273 None:intergenic 30.0%
TGTTGTCTATATTAACTGAC+TGG - tig0010294:14294-14313 None:intergenic 30.0%
ATAGTATCCAAAAGAAGTGA+TGG - tig0010294:14413-14432 None:intergenic 30.0%
TAGAGTTATTGAATGATGGT+TGG + tig0010294:14449-14468 Msa1348290:intron 30.0%
TGAAGTCATAGAGCTTAATA+GGG - tig0010294:14483-14502 None:intergenic 30.0%
ATGAAGTCATAGAGCTTAAT+AGG - tig0010294:14484-14503 None:intergenic 30.0%
CCACATAATAACTTACATCA+TGG - tig0010294:14680-14699 None:intergenic 30.0%
CCATGATGTAAGTTATTATG+TGG + tig0010294:14677-14696 Msa1348290:intron 30.0%
TGTAAGTTATTATGTGGGAT+TGG + tig0010294:14683-14702 Msa1348290:intron 30.0%
TAAGAAAGCTGAAACATCAT+TGG - tig0010294:14930-14949 None:intergenic 30.0%
ATGAACAGAGTTATATGTAG+TGG + tig0010294:15043-15062 Msa1348290:intron 30.0%
! TTGTTTAGTTCACAATCTTC+CGG + tig0010294:15477-15496 Msa1348290:intron 30.0%
TTACCAGGCACTATTATATA+GGG - tig0010294:15783-15802 None:intergenic 30.0%
TTTACCAGGCACTATTATAT+AGG - tig0010294:15784-15803 None:intergenic 30.0%
!! TCTTTTAAAAGGACTTTACC+AGG - tig0010294:15798-15817 None:intergenic 30.0%
!! GGTAAAGTCCTTTTAAAAGA+AGG + tig0010294:15798-15817 Msa1348290:intron 30.0%
! AGAAGGCTTAAACAGATTTT+TGG + tig0010294:15815-15834 Msa1348290:intron 30.0%
!!! AAACCTGGATTTTGAAATGA+CGG - tig0010294:15873-15892 None:intergenic 30.0%
! TCATTTCAAAATCCAGGTTT+TGG + tig0010294:15873-15892 Msa1348290:intron 30.0%
TCTGTTCATATACGAAATTG+GGG - tig0010294:15950-15969 None:intergenic 30.0%
! TCTCCCAATTTTACTTGAAA+TGG - tig0010294:16057-16076 None:intergenic 30.0%
ACAGAAAATAGAGGTTTGTA+TGG - tig0010294:16157-16176 None:intergenic 30.0%
AAAATAAGCAAAGTGGAAAG+GGG - tig0010294:16224-16243 None:intergenic 30.0%
GAAAATAAGCAAAGTGGAAA+GGG - tig0010294:16225-16244 None:intergenic 30.0%
!! CTTTTGGAAAATAAGCAAAG+TGG - tig0010294:16231-16250 None:intergenic 30.0%
! TTATATTCAGAGAGAGCTTT+TGG - tig0010294:16247-16266 None:intergenic 30.0%
! TTTATGTTGTTTGGTCTAAG+AGG + tig0010294:16733-16752 Msa1348290:three_prime_UTR 30.0%
! TTATGTTGTTTGGTCTAAGA+GGG + tig0010294:16734-16753 Msa1348290:three_prime_UTR 30.0%
AGAGAGAGATTGACATACAT+TGG + tig0010294:7882-7901 Msa1348290:five_prime_UTR 35.0%
TACATTGGAAAATGGGGATT+TGG + tig0010294:7897-7916 Msa1348290:five_prime_UTR 35.0%
ACATTGGAAAATGGGGATTT+GGG + tig0010294:7898-7917 Msa1348290:five_prime_UTR 35.0%
CAAATTTCCACACACCATTT+GGG + tig0010294:7961-7980 Msa1348290:five_prime_UTR 35.0%
GATTAGATTGAAGTGGTTGT+TGG - tig0010294:8024-8043 None:intergenic 35.0%
GGAAAATTGAATAACCTGGA+TGG - tig0010294:8053-8072 None:intergenic 35.0%
CATCATTCTATGTGTGTGTT+TGG - tig0010294:8491-8510 None:intergenic 35.0%
CAAACACACACATAGAATGA+TGG + tig0010294:8489-8508 Msa1348290:intron 35.0%
! TATCGTCTGGAGTAATTTGA+TGG + tig0010294:8717-8736 Msa1348290:intron 35.0%
TTATATTACCAACAGCTGTG+TGG + tig0010294:8781-8800 Msa1348290:intron 35.0%
GCATAGAATATGCTAGTAAC+TGG - tig0010294:8817-8836 None:intergenic 35.0%
ATGCATCACCTATAAAACTG+AGG + tig0010294:8833-8852 Msa1348290:intron 35.0%
TGCATCACCTATAAAACTGA+GGG + tig0010294:8834-8853 Msa1348290:intron 35.0%
!! AATCCATCCCTCAGTTTTAT+AGG - tig0010294:8844-8863 None:intergenic 35.0%
GTACACACAAAACACACAAA+TGG + tig0010294:9113-9132 Msa1348290:intron 35.0%
TTCCTTCTACGATTCTATCT+AGG + tig0010294:9320-9339 Msa1348290:intron 35.0%
TCCTTCTACGATTCTATCTA+GGG + tig0010294:9321-9340 Msa1348290:intron 35.0%
GAACAAACACAACAAAACTG+AGG - tig0010294:9521-9540 None:intergenic 35.0%
AAGGAAAATTCGACATGCTT+GGG - tig0010294:9543-9562 None:intergenic 35.0%
AAAGGAAAATTCGACATGCT+TGG - tig0010294:9544-9563 None:intergenic 35.0%
! AGCATGTCGAATTTTCCTTT+TGG + tig0010294:9544-9563 Msa1348290:intron 35.0%
CAAGCTCATACGAAAAGAAA+AGG + tig0010294:9804-9823 Msa1348290:CDS 35.0%
CATTCATCAGCAAAGAACAT+TGG - tig0010294:9848-9867 None:intergenic 35.0%
!!! TCCATTTTTAGTTGGAGAAG+GGG - tig0010294:10120-10139 None:intergenic 35.0%
TTCAAGACCTAATCAGTAGA+TGG + tig0010294:10177-10196 Msa1348290:intron 35.0%
!! TCAAAATTCTAAGCATTGGG+AGG - tig0010294:10323-10342 None:intergenic 35.0%
ATTAGGTGGAAGCAAATGTA+GGG - tig0010294:10371-10390 None:intergenic 35.0%
! GACCTAATCTCTTTTCAATG+AGG + tig0010294:10409-10428 Msa1348290:intron 35.0%
TCCCTCATTGAAAAGAGATT+AGG - tig0010294:10414-10433 None:intergenic 35.0%
ATTGGGCCAAATAGTATACT+AGG - tig0010294:10467-10486 None:intergenic 35.0%
! AGTATGTTGATAGGCAGATT+GGG - tig0010294:10484-10503 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + tig0010294:10534-10553 Msa1348290:intron 35.0%
CTTTATCTTGTAGAGGTGAT+AGG + tig0010294:10657-10676 Msa1348290:intron 35.0%
! GCACAAAATTTGTTTGGTGA+AGG + tig0010294:10743-10762 Msa1348290:intron 35.0%
! CAAAATTTGTTTGGTGAAGG+TGG + tig0010294:10746-10765 Msa1348290:intron 35.0%
GGTCAGTAATTTAGACAACA+AGG - tig0010294:10862-10881 None:intergenic 35.0%
CTGATATCATGACAGATAAG+TGG - tig0010294:10883-10902 None:intergenic 35.0%
TAAGATAGGCTTCTCTAACT+TGG + tig0010294:10922-10941 Msa1348290:intron 35.0%
ACAAGTTATAACACACAAGC+AGG - tig0010294:11027-11046 None:intergenic 35.0%
AAAGAACGGGAGTAGAAATA+AGG - tig0010294:11153-11172 None:intergenic 35.0%
!! TACTCCCGTTCTTTACTTTT+TGG + tig0010294:11159-11178 Msa1348290:intron 35.0%
TTACTGTTACAGTCCTCTTA+TGG + tig0010294:11219-11238 Msa1348290:intron 35.0%
! TCATCTATCTCTAGAAAAGC+TGG - tig0010294:11392-11411 None:intergenic 35.0%
TTGCATTTAAAGGTAACCTG+AGG - tig0010294:11663-11682 None:intergenic 35.0%
AAATGCAACCCATCTATTGT+TGG + tig0010294:11675-11694 Msa1348290:intron 35.0%
!! TTTGATGATTTTGCTTCTCG+GGG + tig0010294:11699-11718 Msa1348290:intron 35.0%
!!! TTTTTTTGGGTCACTGGAAT+AGG + tig0010294:11910-11929 Msa1348290:intron 35.0%
GCAGATAATAAGAGAGAAGA+TGG - tig0010294:12073-12092 None:intergenic 35.0%
TTATTATCTGCAGTGATGCT+AGG + tig0010294:12082-12101 Msa1348290:intron 35.0%
TATTATCTGCAGTGATGCTA+GGG + tig0010294:12083-12102 Msa1348290:intron 35.0%
TTCTGTACGCTAGAATTTAC+AGG + tig0010294:12181-12200 Msa1348290:intron 35.0%
AGTGCCATAAATGATATGAC+AGG + tig0010294:12429-12448 Msa1348290:CDS 35.0%
! GAATAGAAGCATAACAACAG+GGG - tig0010294:12493-12512 None:intergenic 35.0%
! TAGTGAGTACAACAGCATTT+TGG - tig0010294:12653-12672 None:intergenic 35.0%
AATGCTGTTGTACTCACTAA+TGG + tig0010294:12654-12673 Msa1348290:CDS 35.0%
GGGATCACAGATATTTAGAA+AGG - tig0010294:12698-12717 None:intergenic 35.0%
GAAGGATATCATGCGAAATT+TGG + tig0010294:12927-12946 Msa1348290:intron 35.0%
ACCAGTAAAACTTAGATGTG+TGG + tig0010294:13136-13155 Msa1348290:intron 35.0%
! TCCACACATCTAAGTTTTAC+TGG - tig0010294:13140-13159 None:intergenic 35.0%
ATGTGTGGAGCAAATATCAA+TGG + tig0010294:13151-13170 Msa1348290:intron 35.0%
TATTGTTGCTAGTGACTGTT+TGG - tig0010294:13187-13206 None:intergenic 35.0%
AAACTGGGTGAACAAATTCT+TGG - tig0010294:13308-13327 None:intergenic 35.0%
! AAGAATTTGTTCACCCAGTT+TGG + tig0010294:13307-13326 Msa1348290:intron 35.0%
GCAAAAAAAAAACTGTGACG+TGG - tig0010294:13370-13389 None:intergenic 35.0%
TGAATCTTGGAACCAAAAGA+GGG - tig0010294:13705-13724 None:intergenic 35.0%
GTCTTTGAGTGAGATTCAAA+GGG - tig0010294:13736-13755 None:intergenic 35.0%
! GCAATTTTTGACCCATTTGT+TGG - tig0010294:13816-13835 None:intergenic 35.0%
CTCTAATCATGGCATGATTT+GGG - tig0010294:13901-13920 None:intergenic 35.0%
TGAACTCACATCCAAAATTG+TGG - tig0010294:13933-13952 None:intergenic 35.0%
!!! ACTCCATTTTTTAGTCATGG+AGG - tig0010294:14048-14067 None:intergenic 35.0%
! TATCCAAAAGAAGTGATGGA+CGG - tig0010294:14409-14428 None:intergenic 35.0%
! TCTTTTGCACTTCTGTAAAC+AGG + tig0010294:14517-14536 Msa1348290:intron 35.0%
! TGTAAACAGGCTGAGAATTT+TGG + tig0010294:14530-14549 Msa1348290:intron 35.0%
! GTAAACAGGCTGAGAATTTT+GGG + tig0010294:14531-14550 Msa1348290:intron 35.0%
! GTTATGTGTTTTACAGATGG+AGG + tig0010294:14582-14601 Msa1348290:intron 35.0%
! GTGTATGAAGGATTGTTTTC+AGG - tig0010294:14633-14652 None:intergenic 35.0%
ACATAAACTGTGGTGTATGA+AGG - tig0010294:14645-14664 None:intergenic 35.0%
TCATACACCACAGTTTATGT+TGG + tig0010294:14645-14664 Msa1348290:CDS 35.0%
AATAACTTACATCATGGGGA+AGG - tig0010294:14674-14693 None:intergenic 35.0%
!! GTTATTATGTGGGATTGGTT+TGG + tig0010294:14688-14707 Msa1348290:intron 35.0%
TCATTTGACCATGCATTGAA+TGG - tig0010294:14810-14829 None:intergenic 35.0%
TTCAATGCATGGTCAAATGA+TGG + tig0010294:14810-14829 Msa1348290:intron 35.0%
TCAATGCATGGTCAAATGAT+GGG + tig0010294:14811-14830 Msa1348290:intron 35.0%
!!! AACTTGATTGCTTGTTTTGC+TGG + tig0010294:14841-14860 Msa1348290:intron 35.0%
TCTGTTCATCAGAGCAAAAA+AGG - tig0010294:15032-15051 None:intergenic 35.0%
ATGGATAAGGGTAAAAGAGA+CGG - tig0010294:15086-15105 None:intergenic 35.0%
! TCTCTTTTACCCTTATCCAT+TGG + tig0010294:15086-15105 Msa1348290:intron 35.0%
AAAACAAGGCCAATGGATAA+GGG - tig0010294:15098-15117 None:intergenic 35.0%
ATCCAGCCTTGATTGAAAAA+AGG + tig0010294:15120-15139 Msa1348290:intron 35.0%
TGGATTTCAATACAAACCAC+TGG - tig0010294:15150-15169 None:intergenic 35.0%
ATTGTATACTGCATCATACG+AGG - tig0010294:15312-15331 None:intergenic 35.0%
! AAAGGTTATTAGTCTCAGCA+TGG - tig0010294:15341-15360 None:intergenic 35.0%
CTCATCAAAGAGTAGATACA+AGG - tig0010294:15418-15437 None:intergenic 35.0%
CATTGTCAATTCCATGCATT+GGG + tig0010294:15551-15570 Msa1348290:CDS 35.0%
ATTGTCAATTCCATGCATTG+GGG + tig0010294:15552-15571 Msa1348290:CDS 35.0%
!! ATTACTTGCTGTTTCTGTGT+CGG + tig0010294:15745-15764 Msa1348290:intron 35.0%
! ACGGACTAAAATCTAGTTTC+AGG - tig0010294:15854-15873 None:intergenic 35.0%
TTGCAACAATATGTGGAACT+GGG - tig0010294:15902-15921 None:intergenic 35.0%
ATTGCAACAATATGTGGAAC+TGG - tig0010294:15903-15922 None:intergenic 35.0%
TCCACATATTGTTGCAATCT+TGG + tig0010294:15905-15924 Msa1348290:intron 35.0%
ACCAAGATTGCAACAATATG+TGG - tig0010294:15909-15928 None:intergenic 35.0%
GAAATTGGGGCTAAAAACTA+TGG - tig0010294:15937-15956 None:intergenic 35.0%
! GTTACATTCCTGTTCACTTT+TGG - tig0010294:16080-16099 None:intergenic 35.0%
ATCTGTGATGACTCAATTAC+AGG + tig0010294:16194-16213 Msa1348290:intron 35.0%
GGAAAATAAGCAAAGTGGAA+AGG - tig0010294:16226-16245 None:intergenic 35.0%
!! TTGATTTGTGCAGTGTTCAT+GGG + tig0010294:16277-16296 Msa1348290:intron 35.0%
!! GCAGTAGGAAGTATTTGATA+TGG - tig0010294:16362-16381 None:intergenic 35.0%
TATCAAATACTTCCTACTGC+AGG + tig0010294:16362-16381 Msa1348290:CDS 35.0%
ATCAAATACTTCCTACTGCA+GGG + tig0010294:16363-16382 Msa1348290:CDS 35.0%
ATGTACTATCGTTAACGTGT+TGG + tig0010294:16593-16612 Msa1348290:exon 35.0%
TCTAAGAGGGTTTAATGACT+CGG + tig0010294:16747-16766 Msa1348290:three_prime_UTR 35.0%
GTGAGACTATACGAGAAGAA+AGG + tig0010294:7922-7941 Msa1348290:five_prime_UTR 40.0%
GCAAATTTCCACACACCATT+TGG + tig0010294:7960-7979 Msa1348290:five_prime_UTR 40.0%
!! TGAAGTGGTTGTTGGTGATT+GGG - tig0010294:8016-8035 None:intergenic 40.0%
!! TTGAAGTGGTTGTTGGTGAT+TGG - tig0010294:8017-8036 None:intergenic 40.0%
GGATGGAGATTAGATTGAAG+TGG - tig0010294:8031-8050 None:intergenic 40.0%
ATTGAATAACCTGGATGGGA+TGG - tig0010294:8048-8067 None:intergenic 40.0%
TGGGGGAAAATTGAATAACC+TGG - tig0010294:8057-8076 None:intergenic 40.0%
AATCGGTGAATGAAATCTGG+GGG - tig0010294:8074-8093 None:intergenic 40.0%
GAATCGGTGAATGAAATCTG+GGG - tig0010294:8075-8094 None:intergenic 40.0%
CGAATCGGTGAATGAAATCT+GGG - tig0010294:8076-8095 None:intergenic 40.0%
TTGAGCTCTTCTTCTCAAAG+AGG - tig0010294:8399-8418 None:intergenic 40.0%
TGAAATTACCACACAGCTGT+TGG - tig0010294:8792-8811 None:intergenic 40.0%
TCACCTATAAAACTGAGGGA+TGG + tig0010294:8838-8857 Msa1348290:intron 40.0%
!! AACTGAGGGATGGATTTTAG+AGG + tig0010294:8848-8867 Msa1348290:intron 40.0%
!! CATAACTTGCCAGCACTTTT+AGG + tig0010294:9013-9032 Msa1348290:intron 40.0%
! ATGTGAAGACCTAAAAGTGC+TGG - tig0010294:9025-9044 None:intergenic 40.0%
ACCCTAGATAGAATCGTAGA+AGG - tig0010294:9325-9344 None:intergenic 40.0%
TTGGGGAAAAGATAAGATCC+TGG - tig0010294:9363-9382 None:intergenic 40.0%
AATCCAACACTCACACACTA+CGG - tig0010294:9472-9491 None:intergenic 40.0%
GTGGAAAACTACACTACTTC+TGG - tig0010294:9666-9685 None:intergenic 40.0%
!!! CCTTTCAAGCTGGTTTTGTA+AGG - tig0010294:10073-10092 None:intergenic 40.0%
CCTTACAAAACCAGCTTGAA+AGG + tig0010294:10070-10089 Msa1348290:intron 40.0%
TGTACACAAACCTTTCAAGC+TGG - tig0010294:10083-10102 None:intergenic 40.0%
GCTTGAAAGGTTTGTGTACA+AGG + tig0010294:10083-10102 Msa1348290:intron 40.0%
ACCCCTTCTCCAACTAAAAA+TGG + tig0010294:10116-10135 Msa1348290:intron 40.0%
ATTAATAGGGATAGGTCGGA+GGG - tig0010294:10153-10172 None:intergenic 40.0%
TGGAAGCAAATGTAGGGAAA+GGG - tig0010294:10365-10384 None:intergenic 40.0%
GATTAGGTGGAAGCAAATGT+AGG - tig0010294:10372-10391 None:intergenic 40.0%
! TCTCTTTTCAATGAGGGACA+TGG + tig0010294:10416-10435 Msa1348290:intron 40.0%
! CTCTTTTCAATGAGGGACAT+GGG + tig0010294:10417-10436 Msa1348290:intron 40.0%
! GAGTATGTTGATAGGCAGAT+TGG - tig0010294:10485-10504 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - tig0010294:10536-10555 None:intergenic 40.0%
AAACAGCGAAAACTCTTCGT+TGG - tig0010294:10790-10809 None:intergenic 40.0%
! AGCAGTAGAGTTCTCTAGAA+GGG - tig0010294:10813-10832 None:intergenic 40.0%
TATAGTTATCTGCCTTGCTG+TGG + tig0010294:11058-11077 Msa1348290:intron 40.0%
! ATAGTTATCTGCCTTGCTGT+GGG + tig0010294:11059-11078 Msa1348290:intron 40.0%
ACTAGACTAAGCAACTGTCA+GGG - tig0010294:11101-11120 None:intergenic 40.0%
TACTAGACTAAGCAACTGTC+AGG - tig0010294:11102-11121 None:intergenic 40.0%
!! ACAGTCCTCTTATGGTTTTG+TGG + tig0010294:11227-11246 Msa1348290:intron 40.0%
GTAGTCCACAAAACCATAAG+AGG - tig0010294:11235-11254 None:intergenic 40.0%
! CTATCTCTAGAAAAGCTGGA+TGG - tig0010294:11388-11407 None:intergenic 40.0%
TGCTTGACCATATCTGCAAA+TGG - tig0010294:11597-11616 None:intergenic 40.0%
CAGATATGGTCAAGCACTAA+AGG + tig0010294:11601-11620 Msa1348290:intron 40.0%
TCAAGCACTAAAGGTGAACT+GGG + tig0010294:11610-11629 Msa1348290:CDS 40.0%
!! GGGCACTTCAATGTTTTTGT+TGG + tig0010294:11784-11803 Msa1348290:intron 40.0%
AAAGTTGCATCAGTAACCTC+TGG - tig0010294:11820-11839 None:intergenic 40.0%
TCAACTTCTCACCACTAACA+AGG - tig0010294:11967-11986 None:intergenic 40.0%
! CTCAGTCTTGCAAGACATTT+TGG + tig0010294:12029-12048 Msa1348290:intron 40.0%
GTTATGTGGGATCACAAAAC+TGG + tig0010294:12105-12124 Msa1348290:CDS 40.0%
TGTTTCTTTCCGTGATCATC+AGG + tig0010294:12149-12168 Msa1348290:CDS 40.0%
TCATGATCTCCTCAGTTCAT+TGG - tig0010294:12216-12235 None:intergenic 40.0%
AGATGCAATTGGGCAACTAA+AGG + tig0010294:12588-12607 Msa1348290:CDS 40.0%
! GTACTCACTAATGGATCTTC+AGG + tig0010294:12663-12682 Msa1348290:CDS 40.0%
! ACCAAAGCCTTTTACTCACT+AGG + tig0010294:12763-12782 Msa1348290:intron 40.0%
ACCTAGTGAGTAAAAGGCTT+TGG - tig0010294:12767-12786 None:intergenic 40.0%
! AAAGCCTTTTACTCACTAGG+TGG + tig0010294:12766-12785 Msa1348290:intron 40.0%
! AAGCCTTTTACTCACTAGGT+GGG + tig0010294:12767-12786 Msa1348290:intron 40.0%
! GAGAGAGTATGCATCAAAAC+TGG - tig0010294:13032-13051 None:intergenic 40.0%
!! GTTTTGATGCATACTCTCTC+CGG + tig0010294:13032-13051 Msa1348290:intron 40.0%
TTTCCACTTGGTTGCTAGAT+TGG - tig0010294:13222-13241 None:intergenic 40.0%
!! GTTGTTCTTTGGTTTGACTG+TGG - tig0010294:13251-13270 None:intergenic 40.0%
AGTCATTGTTGGACCAAACT+GGG - tig0010294:13323-13342 None:intergenic 40.0%
AAGTCATTGTTGGACCAAAC+TGG - tig0010294:13324-13343 None:intergenic 40.0%
AAATTAGGTGTGCTCTTGGA+GGG - tig0010294:13434-13453 None:intergenic 40.0%
GTAGAAATTAGGTGTGCTCT+TGG - tig0010294:13438-13457 None:intergenic 40.0%
TCGGGAAAAGGGTAGAAATT+AGG - tig0010294:13449-13468 None:intergenic 40.0%
AGTGAAATCAGTGAGTCTCT+TGG - tig0010294:13486-13505 None:intergenic 40.0%
!! CTAAGGTTTGGTCCCTTTTA+GGG - tig0010294:13551-13570 None:intergenic 40.0%
GGAAATTCAAGGCTAAGGTT+TGG - tig0010294:13563-13582 None:intergenic 40.0%
CCTTAGGAAATTCAAGGCTA+AGG - tig0010294:13568-13587 None:intergenic 40.0%
!! CCTTAGCCTTGAATTTCCTA+AGG + tig0010294:13565-13584 Msa1348290:intron 40.0%
GGAGATCCTTAGGAAATTCA+AGG - tig0010294:13574-13593 None:intergenic 40.0%
! TTCCTAAGGATCTCCTCTTT+TGG + tig0010294:13579-13598 Msa1348290:intron 40.0%
GAATCTTGAGAGACCAAAAG+AGG - tig0010294:13595-13614 None:intergenic 40.0%
AATCTTGGAACCAAAAGAGG+GGG - tig0010294:13703-13722 None:intergenic 40.0%
GAATCTTGGAACCAAAAGAG+GGG - tig0010294:13704-13723 None:intergenic 40.0%
GTGAATCTTGGAACCAAAAG+AGG - tig0010294:13706-13725 None:intergenic 40.0%
GGTCTTTGAGTGAGATTCAA+AGG - tig0010294:13737-13756 None:intergenic 40.0%
GAACTTAGGCTAAGGTTTGA+GGG - tig0010294:13758-13777 None:intergenic 40.0%
!! CTTTTAGGGAACTTAGGCTA+AGG - tig0010294:13766-13785 None:intergenic 40.0%
!! AGGGAACTTTTAGGGAACTT+AGG - tig0010294:13772-13791 None:intergenic 40.0%
! ACCAAAGGAGGGAACTTTTA+GGG - tig0010294:13780-13799 None:intergenic 40.0%
! AACCAAAGGAGGGAACTTTT+AGG - tig0010294:13781-13800 None:intergenic 40.0%
ACTCTCATGAAACCAAAGGA+GGG - tig0010294:13791-13810 None:intergenic 40.0%
ATGTTTAATCCTGGCGCAAT+TGG - tig0010294:13862-13881 None:intergenic 40.0%
CCTCTAATCATGGCATGATT+TGG - tig0010294:13902-13921 None:intergenic 40.0%
CCAAATCATGCCATGATTAG+AGG + tig0010294:13899-13918 Msa1348290:intron 40.0%
GTCTATATTAACTGACTGGC+TGG - tig0010294:14290-14309 None:intergenic 40.0%
AGGTCAAGATAACAGCAATG+AGG + tig0010294:14602-14621 Msa1348290:CDS 40.0%
AAGGTTGCCAACATAAACTG+TGG - tig0010294:14655-14674 None:intergenic 40.0%
!! GTTTTGGTCCATTCAATGCA+TGG + tig0010294:14799-14818 Msa1348290:intron 40.0%
!!! TTGCTTGTTTTGCTGGATGA+CGG + tig0010294:14848-14867 Msa1348290:intron 40.0%
!!! TTTTGCTGGATGACGGATTT+TGG + tig0010294:14855-14874 Msa1348290:intron 40.0%
!!! TTTGCTGGATGACGGATTTT+GGG + tig0010294:14856-14875 Msa1348290:intron 40.0%
CTAAGAACAAGTGAAGACGA+AGG - tig0010294:14985-15004 None:intergenic 40.0%
CTTCGTCTTCACTTGTTCTT+AGG + tig0010294:14983-15002 Msa1348290:intron 40.0%
CAAAACAAGGCCAATGGATA+AGG - tig0010294:15099-15118 None:intergenic 40.0%
TGGATTCAAAACAAGGCCAA+TGG - tig0010294:15105-15124 None:intergenic 40.0%
TCAAGGCTGGATTCAAAACA+AGG - tig0010294:15112-15131 None:intergenic 40.0%
!!! TGCCTTTTTTCAATCAAGGC+TGG - tig0010294:15125-15144 None:intergenic 40.0%
!!! GGAGTGCCTTTTTTCAATCA+AGG - tig0010294:15129-15148 None:intergenic 40.0%
!! ATTGAAAAAAGGCACTCCAG+TGG + tig0010294:15131-15150 Msa1348290:intron 40.0%
ATTATATCACACACTGCAGC+TGG - tig0010294:15170-15189 None:intergenic 40.0%
CCAATGCATGGAATTGACAA+TGG - tig0010294:15553-15572 None:intergenic 40.0%
CCATTGTCAATTCCATGCAT+TGG + tig0010294:15550-15569 Msa1348290:CDS 40.0%
TTGTCAATTCCATGCATTGG+GGG + tig0010294:15553-15572 Msa1348290:CDS 40.0%
TGTCAGATACAATACTCACG+AGG + tig0010294:15625-15644 Msa1348290:CDS 40.0%
TCTTCCATTAGCCATCTGAA+TGG - tig0010294:15663-15682 None:intergenic 40.0%
TAATTGACAAGACCAGCAAC+AGG - tig0010294:15725-15744 None:intergenic 40.0%
!! TTACTTGCTGTTTCTGTGTC+GGG + tig0010294:15746-15765 Msa1348290:intron 40.0%
TTGCCCTATATAATAGTGCC+TGG + tig0010294:15777-15796 Msa1348290:intron 40.0%
AGTCCGTCATTTCAAAATCC+AGG + tig0010294:15867-15886 Msa1348290:intron 40.0%
CCATTTCAAAATCCGGGTTT+CGG - tig0010294:16021-16040 None:intergenic 40.0%
!!! CGAAACCCGGATTTTGAAAT+GGG + tig0010294:16019-16038 Msa1348290:intron 40.0%
!!! GAAACCCGGATTTTGAAATG+GGG + tig0010294:16020-16039 Msa1348290:intron 40.0%
!!! AAACCCGGATTTTGAAATGG+GGG + tig0010294:16021-16040 Msa1348290:intron 40.0%
ACGTGGATCACAGAAAATAG+AGG - tig0010294:16166-16185 None:intergenic 40.0%
!! CTTGATTTGTGCAGTGTTCA+TGG + tig0010294:16276-16295 Msa1348290:intron 40.0%
! TGATTTGTGCAGTGTTCATG+GGG + tig0010294:16278-16297 Msa1348290:intron 40.0%
ATTTGATATGGTTGTGCAGC+AGG - tig0010294:16350-16369 None:intergenic 40.0%
CAAGCTCTTCTTCAAATGTC+TGG + tig0010294:16473-16492 Msa1348290:CDS 40.0%
GAGTTTATACCCATTGAAGC+AGG - tig0010294:16515-16534 None:intergenic 40.0%
ACCAGCATATCCATCATACA+TGG - tig0010294:16552-16571 None:intergenic 40.0%
CTAAGAGGGTTTAATGACTC+GGG + tig0010294:16748-16767 Msa1348290:three_prime_UTR 40.0%
TTATCTTGTCACGACACGAA+AGG - tig0010294:16916-16935 None:intergenic 40.0%
ACCATTTGGGAACGAACCAA+CGG + tig0010294:7974-7993 Msa1348290:five_prime_UTR 45.0%
ATCTAATCTCCATCCCATCC+AGG + tig0010294:8036-8055 Msa1348290:five_prime_UTR 45.0%
GCGAATCGGTGAATGAAATC+TGG - tig0010294:8077-8096 None:intergenic 45.0%
CAACAGATGTATCACCATCC+TGG + tig0010294:8289-8308 Msa1348290:CDS 45.0%
GAAATTGGACAGCGGAAGAT+TGG - tig0010294:8748-8767 None:intergenic 45.0%
GGTATCTTCGTATTGTTGCC+AGG + tig0010294:9342-9361 Msa1348290:intron 45.0%
!! CATGCAGAAGCATCAAAACC+AGG - tig0010294:9449-9468 None:intergenic 45.0%
!! GCAGAAGTTTTTCAGAGTGC+TGG + tig0010294:9766-9785 Msa1348290:CDS 45.0%
GATTAATAGGGATAGGTCGG+AGG - tig0010294:10154-10173 None:intergenic 45.0%
! GCGATGTCCATCTACTGATT+AGG - tig0010294:10187-10206 None:intergenic 45.0%
GTGGAAGCAAATGTAGGGAA+AGG - tig0010294:10366-10385 None:intergenic 45.0%
GTAGAGGTGATAGGTTGTCA+AGG + tig0010294:10666-10685 Msa1348290:intron 45.0%
GAAAACTCTTCGTTGGCACT+TGG - tig0010294:10783-10802 None:intergenic 45.0%
GAGCAGTAGAGTTCTCTAGA+AGG - tig0010294:10814-10833 None:intergenic 45.0%
ACTCTACTGCTCGATGAATG+AGG + tig0010294:10822-10841 Msa1348290:intron 45.0%
! TAGTTATCTGCCTTGCTGTG+GGG + tig0010294:11060-11079 Msa1348290:intron 45.0%
GAAACAGCTGTAGAGCCATT+AGG - tig0010294:11453-11472 None:intergenic 45.0%
GTCAAGCACTAAAGGTGAAC+TGG + tig0010294:11609-11628 Msa1348290:CDS 45.0%
GGCATATGCTAATAGCAGCA+GGG + tig0010294:11631-11650 Msa1348290:CDS 45.0%
ATATGCTAATAGCAGCAGGG+AGG + tig0010294:11634-11653 Msa1348290:CDS 45.0%
!! TGTTGGTGATTTGAGTCCAG+AGG + tig0010294:11801-11820 Msa1348290:CDS 45.0%
AAAGGGGGAAAAAAGCAACG+AGG - tig0010294:11883-11902 None:intergenic 45.0%
CAGTGATGCTAGGGTTATGT+GGG + tig0010294:12092-12111 Msa1348290:intron 45.0%
CACAAAACTGGTCGCTCAAA+AGG + tig0010294:12117-12136 Msa1348290:CDS 45.0%
ACTGGTCGCTCAAAAGGATA+TGG + tig0010294:12123-12142 Msa1348290:CDS 45.0%
AGAGACCAACCAATGAACTG+AGG + tig0010294:12204-12223 Msa1348290:intron 45.0%
GATCTCCTCAGTTCATTGGT+TGG - tig0010294:12212-12231 None:intergenic 45.0%
CAGGTAAATGGCTGGGAAAT+AGG + tig0010294:12559-12578 Msa1348290:intron 45.0%
AATTGGGCAACTAAAGGAGC+TGG + tig0010294:12594-12613 Msa1348290:CDS 45.0%
! AGCCTTTTACTCACTAGGTG+GGG + tig0010294:12768-12787 Msa1348290:intron 45.0%
AACCCCACCTAGTGAGTAAA+AGG - tig0010294:12773-12792 None:intergenic 45.0%
! TTTTACTCACTAGGTGGGGT+TGG + tig0010294:12772-12791 Msa1348290:intron 45.0%
GCTAGTGACTGTTTGGTTGT+TGG - tig0010294:13180-13199 None:intergenic 45.0%
GATCCAATCTAGCAACCAAG+TGG + tig0010294:13216-13235 Msa1348290:intron 45.0%
!! CTGTGGTTTTGCTTTCCACT+TGG - tig0010294:13234-13253 None:intergenic 45.0%
GTCCAACAATGACTTACGTC+TGG + tig0010294:13329-13348 Msa1348290:intron 45.0%
CTCCAGACGTAAGTCATTGT+TGG - tig0010294:13334-13353 None:intergenic 45.0%
CAACAATGACTTACGTCTGG+AGG + tig0010294:13332-13351 Msa1348290:intron 45.0%
GAAATTAGGTGTGCTCTTGG+AGG - tig0010294:13435-13454 None:intergenic 45.0%
CGAGAAGAGATTCGGGAAAA+GGG - tig0010294:13460-13479 None:intergenic 45.0%
ACGAGAAGAGATTCGGGAAA+AGG - tig0010294:13461-13480 None:intergenic 45.0%
TTGGTCACGAGAAGAGATTC+GGG - tig0010294:13467-13486 None:intergenic 45.0%
CTTGGTCACGAGAAGAGATT+CGG - tig0010294:13468-13487 None:intergenic 45.0%
!! CTCACTGATTTCACTACCCA+AGG + tig0010294:13491-13510 Msa1348290:intron 45.0%
!! GCTAAGGTTTGGTCCCTTTT+AGG - tig0010294:13552-13571 None:intergenic 45.0%
GACCAAAAGAGGAGATCCTT+AGG - tig0010294:13584-13603 None:intergenic 45.0%
TGGTGTCTTTGTGAGCAACT+TGG - tig0010294:13620-13639 None:intergenic 45.0%
!!! GAAAGGGTTGGTACCTTTTG+GGG - tig0010294:13673-13692 None:intergenic 45.0%
!!! GGAAAGGGTTGGTACCTTTT+GGG - tig0010294:13674-13693 None:intergenic 45.0%
AAGGGTCAAGACGTGAATCT+TGG - tig0010294:13718-13737 None:intergenic 45.0%
GGAACTTAGGCTAAGGTTTG+AGG - tig0010294:13759-13778 None:intergenic 45.0%
TCCCTAAAAGTTCCCTCCTT+TGG + tig0010294:13776-13795 Msa1348290:intron 45.0%
GACTCTCATGAAACCAAAGG+AGG - tig0010294:13792-13811 None:intergenic 45.0%
TCATGAGAGTCCCCAACAAA+TGG + tig0010294:13801-13820 Msa1348290:intron 45.0%
CATGAGAGTCCCCAACAAAT+GGG + tig0010294:13802-13821 Msa1348290:intron 45.0%
! TCATGGCATGATTTGGGCAA+CGG - tig0010294:13895-13914 None:intergenic 45.0%
CATCCAAAATTGTGGCACGA+TGG - tig0010294:13925-13944 None:intergenic 45.0%
!!! TTGCTGGATGACGGATTTTG+GGG + tig0010294:14857-14876 Msa1348290:intron 45.0%
!! TAAGTGAGGCATTGAGACTC+AGG - tig0010294:14957-14976 None:intergenic 45.0%
GAACAAGTGAAGACGAAGGT+GGG - tig0010294:14981-15000 None:intergenic 45.0%
AGAACAAGTGAAGACGAAGG+TGG - tig0010294:14982-15001 None:intergenic 45.0%
CTTCTGCTGCAGTATTACCA+TGG + tig0010294:15201-15220 Msa1348290:intron 45.0%
TTACCATGGCAGACATCACT+AGG + tig0010294:15215-15234 Msa1348290:intron 45.0%
GGCTGCAGTACTTACAGTTA+CGG + tig0010294:15259-15278 Msa1348290:intron 45.0%
ACAACTGTGCTTGAGATCAC+AGG + tig0010294:15511-15530 Msa1348290:intron 45.0%
ATGGCCATTCAGATGGCTAA+TGG + tig0010294:15656-15675 Msa1348290:CDS 45.0%
TCAGATGGCTAATGGAAGAC+CGG + tig0010294:15664-15683 Msa1348290:CDS 45.0%
TTCATAGTCTTCCCACGAAC+CGG - tig0010294:15686-15705 None:intergenic 45.0%
AGAATCCTTTCACCTGTTGC+TGG + tig0010294:15710-15729 Msa1348290:intron 45.0%
!! TACTTGCTGTTTCTGTGTCG+GGG + tig0010294:15747-15766 Msa1348290:intron 45.0%
TGGGGCTAAAAACTATGGCA+GGG - tig0010294:15932-15951 None:intergenic 45.0%
TTGGGGCTAAAAACTATGGC+AGG - tig0010294:15933-15952 None:intergenic 45.0%
! GTCACCCAGTGGTGATTTTT+GGG - tig0010294:15999-16018 None:intergenic 45.0%
!! CCGAAACCCGGATTTTGAAA+TGG + tig0010294:16018-16037 Msa1348290:intron 45.0%
!!! AACCCGGATTTTGAAATGGG+GGG + tig0010294:16022-16041 Msa1348290:intron 45.0%
AGTCCCCCCATTTCAAAATC+CGG - tig0010294:16028-16047 None:intergenic 45.0%
TTGGGAGACCAAAAGTGAAC+AGG + tig0010294:16069-16088 Msa1348290:intron 45.0%
! CTTTTGTTCCTTCCGCCAAT+TGG + tig0010294:16101-16120 Msa1348290:intron 45.0%
TAGCAGCACTGTAGCATACT+CGG + tig0010294:16129-16148 Msa1348290:intron 45.0%
ATCACAGATGCTGTCAAACG+TGG - tig0010294:16183-16202 None:intergenic 45.0%
! AATGGATTTGAAGCTGTCCC+AGG - tig0010294:16320-16339 None:intergenic 45.0%
CTGATAAGCCAACAACTCAG+CGG - tig0010294:16408-16427 None:intergenic 45.0%
GAAGAAGAGCTTGTCCTGAA+AGG - tig0010294:16466-16485 None:intergenic 45.0%
CTTCAAATGTCTGGACAGCA+TGG + tig0010294:16482-16501 Msa1348290:CDS 45.0%
GCATCTCAAGCCATGTATGA+TGG + tig0010294:16539-16558 Msa1348290:CDS 45.0%
!! GCCATGTATGATGGATATGC+TGG + tig0010294:16548-16567 Msa1348290:CDS 45.0%
TCACGACACGAAAGGAAAAC+AGG - tig0010294:16908-16927 None:intergenic 45.0%
!! AATAACAAATATTAAAAATT+GGG - tig0010294:9381-9400 None:intergenic 5.0%
!! AAATAACAAATATTAAAAAT+TGG - tig0010294:9382-9401 None:intergenic 5.0%
!!! ATTTTTAATATTTGTTATTT+TGG + tig0010294:9382-9401 Msa1348290:intron 5.0%
!!! TTTATTTACAAAATATTTTT+TGG + tig0010294:15367-15386 Msa1348290:intron 5.0%
GTTCGTTCCCAAATGGTGTG+TGG - tig0010294:7971-7990 None:intergenic 50.0%
CCATTTGGGAACGAACCAAC+GGG + tig0010294:7975-7994 Msa1348290:five_prime_UTR 50.0%
TTGAGTGCGTACCTGAGTCA+TGG - tig0010294:8332-8351 None:intergenic 50.0%
TAGATGGAGCCTGTACCAAG+TGG + tig0010294:9413-9432 Msa1348290:intron 50.0%
GGCAGATTTCCACTTGGTAC+AGG - tig0010294:9425-9444 None:intergenic 50.0%
!! GCAGAAGCATCAAAACCAGG+AGG - tig0010294:9446-9465 None:intergenic 50.0%
ATGCCGTAGTGTGTGAGTGT+TGG + tig0010294:9466-9485 Msa1348290:intron 50.0%
CTCATCCTTACAAAACCGGC+TGG + tig0010294:10538-10557 Msa1348290:intron 50.0%
CTACTGCTCGATGAATGAGG+TGG + tig0010294:10825-10844 Msa1348290:intron 50.0%
GGGCATATGCTAATAGCAGC+AGG + tig0010294:11630-11649 Msa1348290:CDS 50.0%
GCAGTGATGCTAGGGTTATG+TGG + tig0010294:12091-12110 Msa1348290:intron 50.0%
TTCCCAGCCATTTACCTGCA+CGG - tig0010294:12557-12576 None:intergenic 50.0%
CATGGGATGGGAAACACATG+AGG - tig0010294:13643-13662 None:intergenic 50.0%
!! CCTTTTGGGGAGAGGTTCAT+GGG - tig0010294:13660-13679 None:intergenic 50.0%
!! ACCTTTTGGGGAGAGGTTCA+TGG - tig0010294:13661-13680 None:intergenic 50.0%
!!! GGGAAAGGGTTGGTACCTTT+TGG - tig0010294:13675-13694 None:intergenic 50.0%
AACCAAAAGAGGGGGCTCTT+GGG - tig0010294:13695-13714 None:intergenic 50.0%
GGGGACTCTCATGAAACCAA+AGG - tig0010294:13795-13814 None:intergenic 50.0%
GGCGCAATTGGAACAGGTAT+AGG - tig0010294:13850-13869 None:intergenic 50.0%
ATACCTGTTCCAATTGCGCC+AGG + tig0010294:13850-13869 Msa1348290:intron 50.0%
AATCCTGGCGCAATTGGAAC+AGG - tig0010294:13856-13875 None:intergenic 50.0%
! AGGCCATCGTGCCACAATTT+TGG + tig0010294:13919-13938 Msa1348290:intron 50.0%
!! AGACGAAGGTGGGTTAAGTG+AGG - tig0010294:14971-14990 None:intergenic 50.0%
AATTCCATGCATTGGGGGCA+GGG + tig0010294:15558-15577 Msa1348290:CDS 50.0%
! AACCTTTGCCGCTCTGAACT+CGG - tig0010294:15598-15617 None:intergenic 50.0%
! GTTCAGAGCGGCAAAGGTTT+TGG + tig0010294:15599-15618 Msa1348290:CDS 50.0%
TACTCACGAGGAAGCAGCAA+TGG + tig0010294:15637-15656 Msa1348290:CDS 50.0%
AGCAGCAATGGCCATTCAGA+TGG + tig0010294:15649-15668 Msa1348290:CDS 50.0%
!! CTAATGGAAGACCGGTTCGT+GGG + tig0010294:15672-15691 Msa1348290:CDS 50.0%
GGTTCGTGGGAAGACTATGA+AGG + tig0010294:15685-15704 Msa1348290:CDS 50.0%
CAAGACCAGCAACAGGTGAA+AGG - tig0010294:15718-15737 None:intergenic 50.0%
TTGGGCCCAAAAATCACCAC+TGG + tig0010294:15991-16010 Msa1348290:intron 50.0%
TGGGCCCAAAAATCACCACT+GGG + tig0010294:15992-16011 Msa1348290:intron 50.0%
! GGTCACCCAGTGGTGATTTT+TGG - tig0010294:16000-16019 None:intergenic 50.0%
GTCCCCCCATTTCAAAATCC+GGG - tig0010294:16027-16046 None:intergenic 50.0%
! AGTGCTGCTATAGCGCCAAT+TGG - tig0010294:16119-16138 None:intergenic 50.0%
GTAGCAAACCAACTCCTCCT+GGG + tig0010294:16300-16319 Msa1348290:CDS 50.0%
TGATATGGTTGTGCAGCAGG+AGG - tig0010294:16347-16366 None:intergenic 50.0%
CTATACTGCCGCTGAGTTGT+TGG + tig0010294:16397-16416 Msa1348290:CDS 50.0%
AGAAACAGCAGCCTGACTCA+AGG - tig0010294:16441-16460 None:intergenic 50.0%
!! TTGAGTCAGGCTGCTGTTTC+TGG + tig0010294:16440-16459 Msa1348290:CDS 50.0%
TACCCATTGAAGCAGGAGCT+AGG - tig0010294:16508-16527 None:intergenic 50.0%
!! CCCGTTGGTTCGTTCCCAAA+TGG - tig0010294:7978-7997 None:intergenic 55.0%
AGTGCGTACCTGAGTCATGG+CGG - tig0010294:8329-8348 None:intergenic 55.0%
CCAGGAGGCAGATTTCCACT+TGG - tig0010294:9431-9450 None:intergenic 55.0%
CCAAGTGGAAATCTGCCTCC+TGG + tig0010294:9428-9447 Msa1348290:CDS 55.0%
TGAGCTTGCACCCAGCAAGA+GGG - tig0010294:9792-9811 None:intergenic 55.0%
ATGAGCTTGCACCCAGCAAG+AGG - tig0010294:9793-9812 None:intergenic 55.0%
GATGGACATCGCACTAGCAG+TGG + tig0010294:10195-10214 Msa1348290:intron 55.0%
CGCACTAGCAGTGGAGTGAA+AGG + tig0010294:10204-10223 Msa1348290:intron 55.0%
!! CCTTGCCAGCCGGTTTTGTA+AGG - tig0010294:10546-10565 None:intergenic 55.0%
CCTTACAAAACCGGCTGGCA+AGG + tig0010294:10543-10562 Msa1348290:intron 55.0%
AAAACCGGCTGGCAAGGTGA+GGG + tig0010294:10549-10568 Msa1348290:intron 55.0%
TAAACCCTCACCTTGCCAGC+CGG - tig0010294:10556-10575 None:intergenic 55.0%
GCTGGCAAGGTGAGGGTTTA+GGG + tig0010294:10556-10575 Msa1348290:intron 55.0%
TCTTCGTTGGCACTTGGCAC+AGG - tig0010294:10777-10796 None:intergenic 55.0%
CTCTCTCAAGCTCTCGCTCT+CGG - tig0010294:10964-10983 None:intergenic 55.0%
TAACTGTGCACCCCACAGCA+AGG - tig0010294:11073-11092 None:intergenic 55.0%
TCATGCGCCGTGCAGGTAAA+TGG + tig0010294:12547-12566 Msa1348290:intron 55.0%
TGGGCAACTAAAGGAGCTGG+TGG + tig0010294:12597-12616 Msa1348290:CDS 55.0%
GGGATGGGAAACACATGAGG+TGG - tig0010294:13640-13659 None:intergenic 55.0%
TGGGGAGAGGTTCATGGGAT+GGG - tig0010294:13655-13674 None:intergenic 55.0%
TTGGGGAGAGGTTCATGGGA+TGG - tig0010294:13656-13675 None:intergenic 55.0%
CCCATGAACCTCTCCCCAAA+AGG + tig0010294:13657-13676 Msa1348290:intron 55.0%
!! GGTTGGTACCTTTTGGGGAG+AGG - tig0010294:13668-13687 None:intergenic 55.0%
AAGAGGGGGCTCTTGGGAAA+GGG - tig0010294:13689-13708 None:intergenic 55.0%
AAAGAGGGGGCTCTTGGGAA+AGG - tig0010294:13690-13709 None:intergenic 55.0%
! TTCCCAAGAGCCCCCTCTTT+TGG + tig0010294:13690-13709 Msa1348290:intron 55.0%
GAACCAAAAGAGGGGGCTCT+TGG - tig0010294:13696-13715 None:intergenic 55.0%
GGCACGATGGCCTCTAATCA+TGG - tig0010294:13912-13931 None:intergenic 55.0%
! GCGCCGTCCATCACTTCTTT+TGG + tig0010294:14403-14422 Msa1348290:intron 55.0%
CCACCTAGTGATGTCTGCCA+TGG - tig0010294:15221-15240 None:intergenic 55.0%
CCATGGCAGACATCACTAGG+TGG + tig0010294:15218-15237 Msa1348290:intron 55.0%
CTAGGTGGACAGTTGCAGTG+TGG + tig0010294:15233-15252 Msa1348290:intron 55.0%
TGGACAGTTGCAGTGTGGCA+TGG + tig0010294:15238-15257 Msa1348290:intron 55.0%
CAATTCCATGCATTGGGGGC+AGG + tig0010294:15557-15576 Msa1348290:CDS 55.0%
ATTCCATGCATTGGGGGCAG+GGG + tig0010294:15559-15578 Msa1348290:CDS 55.0%
!! GCTAATGGAAGACCGGTTCG+TGG + tig0010294:15671-15690 Msa1348290:CDS 55.0%
GGAACTGGGAGACCAAAACC+TGG - tig0010294:15888-15907 None:intergenic 55.0%
CTATAGCGCCAATTGGCGGA+AGG - tig0010294:16112-16131 None:intergenic 55.0%
GCTGCTATAGCGCCAATTGG+CGG - tig0010294:16116-16135 None:intergenic 55.0%
GGTAGCAAACCAACTCCTCC+TGG + tig0010294:16299-16318 Msa1348290:CDS 55.0%
! GGATTTGAAGCTGTCCCAGG+AGG - tig0010294:16317-16336 None:intergenic 55.0%
TGTGCAGCAGGAGGAGGTAA+TGG - tig0010294:16338-16357 None:intergenic 55.0%
TATGGTTGTGCAGCAGGAGG+AGG - tig0010294:16344-16363 None:intergenic 55.0%
CCTTGGTTCATCCCTGCAGT+AGG - tig0010294:16377-16396 None:intergenic 55.0%
CCTACTGCAGGGATGAACCA+AGG + tig0010294:16374-16393 Msa1348290:CDS 55.0%
ACTCAGCGGCAGTATAGCCT+TGG - tig0010294:16394-16413 None:intergenic 55.0%
!! GCTGCTGTTTCTGGCCTTTC+AGG + tig0010294:16449-16468 Msa1348290:CDS 55.0%
TGGCCTAGCTCCTGCTTCAA+TGG + tig0010294:16502-16521 Msa1348290:CDS 55.0%
GGCCTAGCTCCTGCTTCAAT+GGG + tig0010294:16503-16522 Msa1348290:CDS 55.0%
CAACGCAACTTGCCACCAGA+AGG - tig0010294:16639-16658 None:intergenic 55.0%
TATTGCTGCTCGACGCCCGT+TGG - tig0010294:7993-8012 None:intergenic 60.0%
TACCTGAGTCATGGCGGCAG+CGG - tig0010294:8323-8342 None:intergenic 60.0%
!! AGAGTGCTGGCCCTCTTGCT+GGG + tig0010294:9779-9798 Msa1348290:CDS 60.0%
CAAAACCGGCTGGCAAGGTG+AGG + tig0010294:10548-10567 Msa1348290:intron 60.0%
GGCTGGCAAGGTGAGGGTTT+AGG + tig0010294:10555-10574 Msa1348290:intron 60.0%
GTTGGCACTTGGCACAGGTC+AGG - tig0010294:10772-10791 None:intergenic 60.0%
GCGCTGCAGATGCTCGATCA+TGG - tig0010294:11257-11276 None:intergenic 60.0%
AGCAGCAGGGAGGATACCTC+AGG + tig0010294:11644-11663 Msa1348290:CDS 60.0%
CGCCGTGCAGGTAAATGGCT+GGG + tig0010294:12552-12571 Msa1348290:intron 60.0%
CGGCAGCAACTTCAGTGTCG+AGG + tig0010294:15279-15298 Msa1348290:intron 60.0%
!! ATTGGGGGCAGGGGTACTTG+AGG + tig0010294:15568-15587 Msa1348290:CDS 60.0%
GAGGAGGTCCGAGTTCAGAG+CGG + tig0010294:15587-15606 Msa1348290:CDS 60.0%
GTCCGAGTTCAGAGCGGCAA+AGG + tig0010294:15593-15612 Msa1348290:CDS 60.0%
ACCACTGGGTGACCGAAACC+CGG + tig0010294:16006-16025 Msa1348290:intron 60.0%
GAAGCTGTCCCAGGAGGAGT+TGG - tig0010294:16311-16330 None:intergenic 60.0%
CAGCCTGACTCAAGGCAAGC+TGG - tig0010294:16433-16452 None:intergenic 60.0%
CCAGAAGGCAACAACGCGAC+TGG - tig0010294:16624-16643 None:intergenic 60.0%
CCAGTCGCGTTGTTGCCTTC+TGG + tig0010294:16621-16640 Msa1348290:three_prime_UTR 60.0%
GTCGCGTTGTTGCCTTCTGG+TGG + tig0010294:16624-16643 Msa1348290:three_prime_UTR 60.0%
!! CAGAGTGCTGGCCCTCTTGC+TGG + tig0010294:9778-9797 Msa1348290:CDS 65.0%
GCGCCGTGCAGGTAAATGGC+TGG + tig0010294:12551-12570 Msa1348290:intron 65.0%
GGGGGCTCTTGGGAAAGGGT+TGG - tig0010294:13685-13704 None:intergenic 65.0%
GTACCCCTGCCCCCAATGCA+TGG - tig0010294:15565-15584 None:intergenic 65.0%
TCCGGGTTTCGGTCACCCAG+TGG - tig0010294:16010-16029 None:intergenic 65.0%
GCGCCAGCTTGCCTTGAGTC+AGG + tig0010294:16427-16446 Msa1348290:CDS 65.0%
CAGCGGCGAGCATGCCAGGA+TGG - tig0010294:8306-8325 None:intergenic 70.0%
!! GGGGGCAGGGGTACTTGAGG+AGG + tig0010294:15571-15590 Msa1348290:CDS 70.0%
CGCCGCTGCCGCCATGACTC+AGG + tig0010294:8318-8337 Msa1348290:CDS 75.0%
! GCGGCAGCGGCGAGCATGCC+AGG - tig0010294:8310-8329 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0010294 gene 7843 16948 7843 ID=Msa1348290;Name=Msa1348290
tig0010294 mRNA 7843 16948 7843 ID=Msa1348290-mRNA-1;Parent=Msa1348290;Name=Msa1348290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=248|1|1|1|0.91|0.84|13|341|443
tig0010294 exon 7843 8057 7843 ID=Msa1348290-mRNA-1:exon:6333;Parent=Msa1348290-mRNA-1
tig0010294 exon 8175 8339 8175 ID=Msa1348290-mRNA-1:exon:6334;Parent=Msa1348290-mRNA-1
tig0010294 exon 9416 9477 9416 ID=Msa1348290-mRNA-1:exon:6335;Parent=Msa1348290-mRNA-1
tig0010294 exon 9723 9825 9723 ID=Msa1348290-mRNA-1:exon:6336;Parent=Msa1348290-mRNA-1
tig0010294 exon 11231 11307 11231 ID=Msa1348290-mRNA-1:exon:6337;Parent=Msa1348290-mRNA-1
tig0010294 exon 11604 11665 11604 ID=Msa1348290-mRNA-1:exon:6338;Parent=Msa1348290-mRNA-1
tig0010294 exon 11785 11872 11785 ID=Msa1348290-mRNA-1:exon:6339;Parent=Msa1348290-mRNA-1
tig0010294 exon 12095 12170 12095 ID=Msa1348290-mRNA-1:exon:6340;Parent=Msa1348290-mRNA-1
tig0010294 exon 12420 12450 12420 ID=Msa1348290-mRNA-1:exon:6341;Parent=Msa1348290-mRNA-1
tig0010294 exon 12562 12684 12562 ID=Msa1348290-mRNA-1:exon:6342;Parent=Msa1348290-mRNA-1
tig0010294 exon 14598 14683 14598 ID=Msa1348290-mRNA-1:exon:6343;Parent=Msa1348290-mRNA-1
tig0010294 exon 15533 15706 15533 ID=Msa1348290-mRNA-1:exon:6344;Parent=Msa1348290-mRNA-1
tig0010294 exon 16290 16948 16290 ID=Msa1348290-mRNA-1:exon:6345;Parent=Msa1348290-mRNA-1
tig0010294 five_prime_UTR 7843 8057 7843 ID=Msa1348290-mRNA-1:five_prime_utr;Parent=Msa1348290-mRNA-1
tig0010294 five_prime_UTR 8175 8207 8175 ID=Msa1348290-mRNA-1:five_prime_utr;Parent=Msa1348290-mRNA-1
tig0010294 CDS 8208 8339 8208 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 9416 9477 9416 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 9723 9825 9723 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 11231 11307 11231 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 11604 11665 11604 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 11785 11872 11785 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 12095 12170 12095 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 12420 12450 12420 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 12562 12684 12562 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 14598 14683 14598 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 15533 15706 15533 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 CDS 16290 16607 16290 ID=Msa1348290-mRNA-1:cds;Parent=Msa1348290-mRNA-1
tig0010294 three_prime_UTR 16608 16948 16608 ID=Msa1348290-mRNA-1:three_prime_utr;Parent=Msa1348290-mRNA-1
Gene Sequence

>Msa1348290

ATGCAACAGAGGCTAAAGTTGCAACAACAACAACAACAACAACAACAACAAGCACTCATGCAGCAAGCTTTGCTTCAACAACAACAGATGTATCACCATCCTGGCATGCTCGCCGCTGCCGCCATGACTCAGATGGAGCCTGTACCAAGTGGAAATCTGCCTCCTGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAACGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGGCCCTCTTGCTGGGTGCAAGCTCATACGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCGCTTGCAATAATGACATTACATGGACGGCAACTATATGGTCAAGCACTAAAGGTGAACTGGGCATATGCTAATAGCAGCAGGGAGGATACCTCAGGGCACTTCAATGTTTTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATACTACTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTGGCAGCTCAAACGAAGAGAAGATCAATGACAGCCAAAATGCTGTTGTACTCACTAATGGATCTTCAGATGGAGGTCAAGATAACAGCAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGGGCAGGGGTACTTGAGGAGGTCCGAGTTCAGAGCGGCAAAGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCAATGGCCATTCAGATGGCTAATGGAAGACCGGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGGACAGCTTCAAATCCATTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATACTGCCGCTGAGTTGTTGGCTTATCAGCGCCAGCTTGCCTTGAGTCAGGCTGCTGTTTCTGGCCTTTCAGGACAAGCTCTTCTTCAAATGTCTGGACAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGCAGCATCTCAAGCCATGTATGATGGATATGCTGGTAATTCTTCAAGACAGCAGCTTATGTACTATCGTTAA
Protein sequence

>Msa1348290

MQQRLKLQQQQQQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYDGYAGNSSRQQLMYYR*