AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001820 MtrunA17_Chr8g0391911 85.141 249 26 2 1 245 1 242 2.62e-131 384
Msa0001820 MtrunA17_Chr6g0456631 89.474 171 17 1 1 170 1 171 5.14e-109 324
Msa0001820 MtrunA17_Chr4g0009851 39.918 243 117 3 9 251 11 224 4.39e-54 186
Msa0001820 MtrunA17_Chr4g0009901 39.560 273 120 5 1 272 1 229 9.33e-52 179
Msa0001820 MtrunA17_Chr1g0161431 37.943 282 131 7 8 271 10 265 1.74e-47 176
Msa0001820 MtrunA17_Chr3g0123131 36.496 274 146 8 8 275 12 263 1.45e-43 164
Msa0001820 MtrunA17_Chr2g0294911 37.262 263 143 5 7 268 27 268 3.40e-42 160
Msa0001820 MtrunA17_Chr8g0376881 35.231 281 140 7 7 275 23 273 3.69e-41 156
Msa0001820 MtrunA17_Chr4g0067981 38.376 271 131 9 7 268 29 272 6.24e-41 157
Msa0001820 MtrunA17_Chr8g0383961 52.593 135 62 2 4 137 9 142 2.06e-40 147
Msa0001820 MtrunA17_Chr3g0137101 34.921 315 148 9 6 297 5 285 3.62e-40 155
Msa0001820 MtrunA17_Chr6g0471041 38.462 234 111 6 14 245 19 221 1.74e-39 149
Msa0001820 MtrunA17_Chr1g0149851 32.479 351 191 9 5 327 1 333 2.34e-39 151
Msa0001820 MtrunA17_Chr1g0149841 36.226 265 147 6 7 268 3 248 5.07e-38 147
Msa0001820 MtrunA17_Chr7g0275891 33.670 297 159 9 6 287 2 275 1.80e-36 139
Msa0001820 MtrunA17_Chr2g0304841 34.432 273 150 7 7 268 16 270 4.16e-33 134
Msa0001820 MtrunA17_Chr4g0074401 33.730 252 150 6 5 248 13 255 2.27e-32 132
Msa0001820 MtrunA17_Chr4g0074411 32.549 255 136 6 9 247 18 252 1.45e-31 129
Msa0001820 MtrunA17_Chr4g0009981 35.500 200 100 3 52 251 1 171 5.06e-31 121
Msa0001820 MtrunA17_Chr7g0275401 31.579 266 154 6 5 256 1 252 1.15e-30 121
Msa0001820 MtrunA17_Chr4g0074421 35.106 188 115 4 58 245 2 182 1.11e-25 104
Msa0001820 MtrunA17_Chr3g0134461 33.603 247 107 7 1 245 1 192 2.07e-25 103
Msa0001820 MtrunA17_Chr4g0011071 34.161 161 79 2 54 214 35 168 5.73e-25 102
Msa0001820 MtrunA17_Chr1g0149831 35.784 204 107 5 67 268 1 182 6.21e-25 103
Msa0001820 MtrunA17_Chr4g0010001 48.750 80 41 0 9 88 10 89 4.45e-22 90.9
Msa0001820 MtrunA17_Chr5g0423031 50.000 80 40 0 9 88 10 89 1.33e-19 87.0
Msa0001820 MtrunA17_Chr3g0134481 36.220 127 79 2 5 130 4 129 2.51e-19 86.3
Msa0001820 MtrunA17_Chr8g0350761 25.681 257 166 5 11 247 19 270 6.00e-16 80.9
Msa0001820 MtrunA17_Chr4g0009991 35.862 145 64 3 101 245 1 116 7.10e-16 74.3
Msa0001820 MtrunA17_Chr7g0223971 30.645 186 83 5 100 254 10 180 1.49e-12 70.1
Msa0001820 MtrunA17_Chr6g0473731 28.824 170 91 4 89 254 10 153 6.53e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001820 AT1G67710.1 36.364 275 140 6 10 274 8 257 8.50e-44 164
Msa0001820 AT2G01760.1 35.540 287 146 8 5 276 3 265 8.15e-42 155
Msa0001820 AT3G16857.1 34.495 287 136 9 9 268 33 294 2.58e-37 147
Msa0001820 AT3G16857.2 34.495 287 136 9 9 268 33 294 3.64e-37 147
Msa0001820 AT2G01760.2 32.381 315 146 9 5 276 3 293 4.79e-36 140
Msa0001820 AT2G25180.1 33.730 252 154 5 7 254 11 253 7.12e-36 142
Msa0001820 AT4G31920.1 33.962 265 124 7 7 254 11 241 6.94e-34 136
Msa0001820 AT5G49240.1 32.090 268 165 6 5 265 34 291 1.75e-32 127
Msa0001820 AT5G58080.1 35.662 272 151 7 7 277 12 260 2.25e-32 132
Msa0001820 AT1G67710.2 36.866 217 103 5 67 274 1 192 7.52e-32 129
Msa0001820 AT3G16857.3 34.677 248 110 9 48 268 2 224 6.58e-29 122
Msa0001820 AT2G01760.3 35.268 224 107 7 67 276 1 200 2.90e-27 112
Msa0001820 AT1G49190.1 31.474 251 156 7 4 245 25 268 3.77e-27 114
Msa0001820 AT3G62670.1 33.333 240 140 8 14 247 42 267 1.26e-26 113
Msa0001820 AT1G67710.3 34.518 197 96 4 87 274 11 183 2.94e-24 106
Msa0001820 AT1G49190.2 33.588 131 85 2 4 133 25 154 5.83e-17 85.1
Msa0001820 AT1G68210.1 28.571 280 164 9 8 256 8 282 1.53e-15 80.5
Msa0001820 AT5G07210.2 23.729 354 210 12 13 339 16 336 1.13e-14 77.8
Msa0001820 AT5G07210.1 23.204 362 210 13 13 339 16 344 2.44e-12 70.1

Find 154 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATCTCTTGCCCTTATT+TGG 0.189913 1_1:-3540190 None:intergenic
TTCTTTGTCCGGGGTGGTTC+GGG 0.278029 1_1:-3540263 None:intergenic
CTTCTTTGTCCGGGGTGGTT+CGG 0.314627 1_1:-3540264 None:intergenic
GGATTGAGGGTAGCCAAATA+AGG 0.317246 1_1:+3540177 Msa0001820:CDS
GGTGACTGGTCCTCAGGCTC+AGG 0.325098 1_1:+3542103 Msa0001820:CDS
AACGATGTACCATCGGAAAA+AGG 0.331149 1_1:+3540227 Msa0001820:CDS
AATAATACTGTAACAGATTT+CGG 0.331250 1_1:+3541672 Msa0001820:CDS
TCTTCTTTGTCTTCTTTGTC+CGG 0.340590 1_1:-3540274 None:intergenic
CAATTAGTATATCTTGTGTT+AGG 0.345112 1_1:-3542203 None:intergenic
ATAATGAAGGCAATTGAAAA+TGG 0.347793 1_1:+3540038 Msa0001820:CDS
AAGGGTGGTGGTTGGTCCTC+AGG 0.351815 1_1:+3541779 Msa0001820:CDS
AAGGGTGGTGGCTGGTCCTC+AGG 0.380509 1_1:+3541977 Msa0001820:CDS
AAAGGTGGTGGCTGCTCGTC+AGG 0.385388 1_1:+3541857 Msa0001820:CDS
CTTCTTTGTCTTCTTTGTCC+GGG 0.397717 1_1:-3540273 None:intergenic
GCAGGTAGCTAGTCATCTTC+AGG 0.404754 1_1:+3540709 Msa0001820:CDS
CTTGAATTTGATAGCACAAA+AGG 0.421977 1_1:+3539784 Msa0001820:CDS
CATGATCATGCAGTTGGTCT+TGG 0.425207 1_1:+3541510 Msa0001820:CDS
GAGCTGGGAAGGGTGGTGGC+TGG 0.425258 1_1:+3541735 Msa0001820:CDS
AAGGATGGCGGCTGGTCCTC+AGG 0.425842 1_1:+3541821 Msa0001820:CDS
GCAAGTGGAGGTTGGTCCTC+AGG 0.426953 1_1:+3541707 Msa0001820:CDS
ACAAGAACTTTAACATTGGC+TGG 0.429953 1_1:-3539565 None:intergenic
CTCAGCCTCAAGAGCTAGGA+AGG 0.439395 1_1:+3542162 Msa0001820:CDS
ATATGTGGCATCATGCTGTT+AGG 0.443627 1_1:+3540108 Msa0001820:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.446172 1_1:+3542120 Msa0001820:CDS
CTCAGACTCGAAAGCTAAGA+AGG 0.449485 1_1:+3541958 Msa0001820:CDS
CAACAATATCCAATGGCATA+TGG 0.455357 1_1:+3541360 Msa0001820:CDS
AAATAAACATCAACAAGAAC+AGG 0.463567 1_1:+3541248 Msa0001820:CDS
AACACAAGATATACTAATTG+AGG 0.466931 1_1:+3542206 Msa0001820:CDS
CTCAGCCTCAAGAGCTAGGA+AGG 0.474289 1_1:+3541802 Msa0001820:CDS
TCAAGAGCTGGGAAGGGTGG+TGG 0.474375 1_1:+3541731 Msa0001820:CDS
CTCAGGTTCAAGAGCTGGGA+AGG 0.474845 1_1:+3541724 Msa0001820:CDS
CTCAGCCTCAAAAGCTAGGA+AGG 0.475835 1_1:+3542078 Msa0001820:CDS
CTCAAGATCAAGAGCTAGGA+AGG 0.478408 1_1:+3541760 Msa0001820:CDS
CTCAACATCAAGAGCTAGGA+AGG 0.478408 1_1:+3541880 Msa0001820:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 1_1:+3541994 Msa0001820:CDS
GATTGAGGGTAGCCAAATAA+GGG 0.479725 1_1:+3540178 Msa0001820:CDS
AACAATTCTTGAACATATGA+AGG 0.483635 1_1:+3540667 Msa0001820:CDS
TATATTTACTTACTAATGAC+AGG 0.483959 1_1:-3539896 None:intergenic
TGGTCCTCAGGTTCAAGAGC+TGG 0.485261 1_1:+3541719 Msa0001820:CDS
AATGAGCAATTGGGGATTGA+GGG 0.485917 1_1:+3540164 Msa0001820:CDS
TACAGCAGCATGTGAACTGT+TGG 0.487233 1_1:-3541295 None:intergenic
CAATGAGCAATTGGGGATTG+AGG 0.491122 1_1:+3540163 Msa0001820:CDS
CCATGATGCAGGTTCGTGTT+GGG 0.494378 1_1:-3541438 None:intergenic
TGTTCTGAAGGATCAACAAA+TGG 0.496320 1_1:+3540014 Msa0001820:CDS
TTTCCCCTTCCTAGCTCTTG+AGG 0.499640 1_1:-3542167 None:intergenic
AGCTCTTGAGGCTGAGCTTG+AGG 0.500477 1_1:-3541915 None:intergenic
AAGGGTGGTGGCTACTCCAC+AGG 0.505062 1_1:+3542139 Msa0001820:CDS
TCCATGATGCAGGTTCGTGT+TGG 0.506466 1_1:-3541439 None:intergenic
ATCAACAAATGGAATAATGA+AGG 0.507137 1_1:+3540025 Msa0001820:CDS
CTTCCTAGCTCTTGATCTTG+AGG 0.508572 1_1:-3541759 None:intergenic
CGAAGAAGGAGCGGGTGGTA+TGG 0.509910 1_1:+3540315 Msa0001820:CDS
TGAAGCTGAAATGCCGGACA+TGG 0.511513 1_1:+3539829 Msa0001820:CDS
AAGAGCTAGGAAGGGGAAAG+AGG 0.511686 1_1:+3542171 Msa0001820:CDS
GAGCTAGGAATGGTGGTGGC+TGG 0.512918 1_1:+3541933 Msa0001820:CDS
TTCATCTGAGGAACATGCAT+TGG 0.513254 1_1:-3541600 None:intergenic
GGAGCAAGCTCTCATGGTTG+TGG 0.514199 1_1:+3541269 Msa0001820:CDS
GAAGAAGACGAAGAAGGAGC+GGG 0.515637 1_1:+3540307 Msa0001820:CDS
GCCTAGACTTACAAGGGAGC+AGG 0.518181 1_1:+3540691 Msa0001820:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 1_1:+3541834 Msa0001820:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 1_1:+3541990 Msa0001820:CDS
CAAGCTCAGCCTCAAAAGCT+AGG 0.520799 1_1:+3542074 Msa0001820:CDS
AGCTCTTGAGGCTGAGCCTG+TGG 0.521609 1_1:-3542155 None:intergenic
CAGGCTCAGGCTCAAGAGCT+AGG 0.522151 1_1:+3542116 Msa0001820:CDS
CAAGCTCAGCCTCAAGAGCT+AGG 0.524513 1_1:+3541918 Msa0001820:CDS
AAAATCAAGTAAAGTATATG+TGG 0.524588 1_1:+3540093 Msa0001820:CDS
AGTTGGTCTTGGAAACTTGA+TGG 0.528215 1_1:+3541521 Msa0001820:CDS
AATCACAAGAACTTTAACAT+TGG 0.529369 1_1:-3539569 None:intergenic
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 1_1:+3541798 Msa0001820:CDS
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 1_1:+3542158 Msa0001820:CDS
AGAACAGGAGCAAGCTCTCA+TGG 0.536290 1_1:+3541263 Msa0001820:CDS
GCCTCAAGAGCTAGGAAGGA+TGG 0.540507 1_1:+3541806 Msa0001820:CDS
TCCACGATGTTGTCCACACT+CGG 0.540582 1_1:-3541645 None:intergenic
GAGCTAGGAAGGGTGGTGGC+TGG 0.541935 1_1:+3541891 Msa0001820:CDS
ACACAAGATATACTAATTGA+GGG 0.543203 1_1:+3542207 Msa0001820:CDS
GGTCCTCAGGTTCAAGAGCT+GGG 0.544277 1_1:+3541720 Msa0001820:CDS
TTCTTTGTCTTCTTTGTCCG+GGG 0.544906 1_1:-3540272 None:intergenic
AAATCAAATGAATCCATGTC+CGG 0.545425 1_1:-3539842 None:intergenic
GAAGACGAAGAAGACGAAGA+AGG 0.546374 1_1:+3540301 Msa0001820:CDS
AGCTCTTGAGGCTGAGCCTG+AGG 0.546926 1_1:-3541795 None:intergenic
AGCTCTTGAGCCTGAGCCTG+AGG 0.546926 1_1:-3542113 None:intergenic
ACATGCATTGGTGATTGTTG+TGG 0.548414 1_1:-3541588 None:intergenic
ACTGATCATGATCATGCAGT+TGG 0.548759 1_1:+3541504 Msa0001820:CDS
GGTTCAAGAGCTGGGAAGGG+TGG 0.548919 1_1:+3541728 Msa0001820:CDS
CCCAACACGAACCTGCATCA+TGG 0.549931 1_1:+3541438 Msa0001820:CDS
AAGCTAAGAAGGGTGGTGGC+TGG 0.555418 1_1:+3541969 Msa0001820:CDS
ATGTTGCATATCCATGATGC+AGG 0.557330 1_1:-3541449 None:intergenic
CAGGCTCAACATCAAGAGCT+AGG 0.558850 1_1:+3541876 Msa0001820:CDS
TTTGTCTTCTTTGTCCGGGG+TGG 0.562381 1_1:-3540269 None:intergenic
CAGCCTCAAAAGCTAGGAAG+GGG 0.562802 1_1:+3542080 Msa0001820:CDS
AAGCTAGGAAGGGTGGTGGC+TGG 0.568049 1_1:+3542047 Msa0001820:CDS
GGCTGATGAGGAAAATGCCT+TGG 0.570075 1_1:-3541417 None:intergenic
TTTCCTAGCTCTTGAGCCTG+AGG 0.573303 1_1:-3541837 None:intergenic
GAGCTAGGAAGGATGGCGGC+TGG 0.575246 1_1:+3541813 Msa0001820:CDS
TGAAGGTGCCTAGACTTACA+AGG 0.576956 1_1:+3540684 Msa0001820:CDS
ACCTGCTCCCTTGTAAGTCT+AGG 0.577890 1_1:-3540692 None:intergenic
GGCTCAAGAGCTAGGAAGGG+TGG 0.577942 1_1:+3541998 Msa0001820:CDS
TGCATCATGGATATGCAACA+TGG 0.578384 1_1:+3541451 Msa0001820:CDS
GGCTCAAGAGCTAGGAAAGG+TGG 0.579566 1_1:+3541842 Msa0001820:CDS
GCCTCAAGAGCTAGGAATGG+TGG 0.580235 1_1:+3541926 Msa0001820:CDS
CAGCCTCAAGAGCTAGGAAG+GGG 0.581740 1_1:+3542164 Msa0001820:CDS
GGTCCTCAAGATCAAGAGCT+AGG 0.581757 1_1:+3541756 Msa0001820:CDS
TTCCCAGAAAATTGATACCA+AGG 0.582328 1_1:+3541400 Msa0001820:CDS
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 1_1:+3542124 Msa0001820:CDS
CTTCCTAGCTCTTGAGCCTG+AGG 0.585618 1_1:-3541993 None:intergenic
ACTACTTGAAGCTGAAATGC+CGG 0.587583 1_1:+3539823 Msa0001820:CDS
GAGCTAGGAAGGGTGGTGGT+TGG 0.591794 1_1:+3541771 Msa0001820:CDS
TTATGATGTTCTTGTTGCTG+AGG 0.596660 1_1:-3541564 None:intergenic
TGGTCTCAATTCAATTACCA+AGG 0.596923 1_1:+3539631 Msa0001820:CDS
GCCTCAAAAGCTAGGAAGGG+GGG 0.598080 1_1:+3542082 Msa0001820:CDS
GCTGTTAGGAAAATGATGAA+AGG 0.599623 1_1:+3540122 Msa0001820:CDS
ACGCTTAAACGATGTACCAT+CGG 0.602369 1_1:+3540220 Msa0001820:CDS
GAACTGCAACCATATGCCAT+TGG 0.602482 1_1:-3541369 None:intergenic
TCAGCCTCAAAAGCTAGGAA+GGG 0.606989 1_1:+3542079 Msa0001820:CDS
GCTACAATGCAAGTGGAGGT+TGG 0.607441 1_1:+3541699 Msa0001820:CDS
GCCATCCTTCCTAGCTCTTG+AGG 0.607945 1_1:-3541807 None:intergenic
CGAAGAAGACGAAGAAGGAG+CGG 0.608903 1_1:+3540306 Msa0001820:CDS
TCGAAAGCTAAGAAGGGTGG+TGG 0.609238 1_1:+3541965 Msa0001820:CDS
CGGTGAAGCTACAATGCAAG+TGG 0.610968 1_1:+3541692 Msa0001820:CDS
CTTCCCAGCTCTTGAACCTG+AGG 0.611183 1_1:-3541723 None:intergenic
TTGACTGCATTATTCATCTG+AGG 0.611554 1_1:-3541612 None:intergenic
TCAAGAGCTAGGAAGGGTGG+TGG 0.612518 1_1:+3541887 Msa0001820:CDS
TCAGTTATATAATATTCACT+TGG 0.614757 1_1:-3541486 None:intergenic
GACTCGAAAGCTAAGAAGGG+TGG 0.616097 1_1:+3541962 Msa0001820:CDS
ACCACCATTCCTAGCTCTTG+AGG 0.617365 1_1:-3541927 None:intergenic
TCAGCCTCAAGAGCTAGGAA+GGG 0.618998 1_1:+3542163 Msa0001820:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.619733 1_1:+3541767 Msa0001820:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.624572 1_1:+3542121 Msa0001820:CDS
AAGATATACCCGAACCACCC+CGG 0.626205 1_1:+3540255 Msa0001820:CDS
TGCAGAACAACAATATCCAA+TGG 0.629974 1_1:+3541353 Msa0001820:CDS
GGCTGGAAACTCATTCCCAA+AGG 0.633277 1_1:-3539548 None:intergenic
CAATGATGTTGTACCGAGTG+TGG 0.635078 1_1:+3541632 Msa0001820:CDS
TCAGGTTCAAGAGCTGGGAA+GGG 0.636064 1_1:+3541725 Msa0001820:CDS
TCAAGAGCTAGGAAAGGTGG+TGG 0.637451 1_1:+3541845 Msa0001820:CDS
TCAAGAGCTAGGAATGGTGG+TGG 0.637451 1_1:+3541929 Msa0001820:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.638725 1_1:+3542127 Msa0001820:CDS
TCAGACTCGAAAGCTAAGAA+GGG 0.638931 1_1:+3541959 Msa0001820:CDS
AGCCTCAAAAGCTAGGAAGG+GGG 0.642823 1_1:+3542081 Msa0001820:CDS
TCAGCCTCAAGAGCTAGGAA+TGG 0.643593 1_1:+3541923 Msa0001820:CDS
TCAATGCTATTGAGAAAACA+TGG 0.646799 1_1:+3539611 Msa0001820:CDS
AGATCAAGAGCTAGGAAGGG+TGG 0.650678 1_1:+3541764 Msa0001820:CDS
ACATCAAGAGCTAGGAAGGG+TGG 0.650678 1_1:+3541884 Msa0001820:CDS
AGGTTCGTGTTGGGCTGATG+AGG 0.653657 1_1:-3541429 None:intergenic
TCAGGCTCAAGAGCTAGGAA+AGG 0.654595 1_1:+3541839 Msa0001820:CDS
GAAGACGAAGAAGGAGCGGG+TGG 0.656592 1_1:+3540310 Msa0001820:CDS
GCATCATGGATATGCAACAT+GGG 0.656904 1_1:+3541452 Msa0001820:CDS
GAAGGTGCCTAGACTTACAA+GGG 0.661563 1_1:+3540685 Msa0001820:CDS
TGAAGCTACAATGCAAGTGG+AGG 0.663678 1_1:+3541695 Msa0001820:CDS
ACCGAGTGTGGACAACATCG+TGG 0.681310 1_1:+3541644 Msa0001820:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 1_1:+3541995 Msa0001820:CDS
GCAGTGACGATGTGTTCTGA+AGG 0.690924 1_1:+3540002 Msa0001820:intron
TCAACATCAAGAGCTAGGAA+GGG 0.691703 1_1:+3541881 Msa0001820:CDS
TCAAGATCAAGAGCTAGGAA+GGG 0.696103 1_1:+3541761 Msa0001820:CDS
CTGTATTGAAATCATCACAG+TGG 0.740386 1_1:+3541313 Msa0001820:CDS
TCAAGAGCTAGGAAGGATGG+CGG 0.754981 1_1:+3541809 Msa0001820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAATTTGATTATTTA+TGG + chr1_1:3540818-3540837 Msa0001820:intron 10.0%
!!! ACATATTATTAATCTTTTAT+AGG + chr1_1:3540886-3540905 Msa0001820:intron 10.0%
!! ATATATTAATTTACAAACCT+TGG - chr1_1:3539651-3539670 None:intergenic 15.0%
!! AAGGTTTGTAAATTAATATA+TGG + chr1_1:3539650-3539669 Msa0001820:intron 15.0%
!! AAAGTTTAAATTTCAAAGAA+CGG - chr1_1:3540751-3540770 None:intergenic 15.0%
!! TGTCAAAAATGAATAAATAA+AGG + chr1_1:3540781-3540800 Msa0001820:intron 15.0%
!! AAATTTGATTATTTATGGTT+TGG + chr1_1:3540823-3540842 Msa0001820:intron 15.0%
!! ATTCAATTAACAATCAAAGA+AGG - chr1_1:3539678-3539697 None:intergenic 20.0%
!! TATATTTACTTACTAATGAC+AGG - chr1_1:3539899-3539918 None:intergenic 20.0%
!! AAAATCAAGTAAAGTATATG+TGG + chr1_1:3540093-3540112 Msa0001820:CDS 20.0%
!!! CTTTTGATAAAAACAAGAAT+AGG - chr1_1:3540416-3540435 None:intergenic 20.0%
!!! GATAGTGTAAAATTTGTTTT+TGG + chr1_1:3540549-3540568 Msa0001820:intron 20.0%
!!! ATATGTTCAAGAATTGTTTT+TGG - chr1_1:3540665-3540684 None:intergenic 20.0%
!!! AGGAATCTCAATATATTTTA+TGG + chr1_1:3540906-3540925 Msa0001820:intron 20.0%
!!! ATTAGTCTTTAACTTTCATT+CGG + chr1_1:3540932-3540951 Msa0001820:intron 20.0%
!! TATTGTCTTGGTTTAATTAA+TGG - chr1_1:3541126-3541145 None:intergenic 20.0%
!! TCAGTTATATAATATTCACT+TGG - chr1_1:3541489-3541508 None:intergenic 20.0%
!! AATAATACTGTAACAGATTT+CGG + chr1_1:3541672-3541691 Msa0001820:CDS 20.0%
! AATCACAAGAACTTTAACAT+TGG - chr1_1:3539572-3539591 None:intergenic 25.0%
! AAAAAGATTGAGACTTTCAT+AGG - chr1_1:3539709-3539728 None:intergenic 25.0%
! ATCAACAAATGGAATAATGA+AGG + chr1_1:3540025-3540044 Msa0001820:CDS 25.0%
! ATAATGAAGGCAATTGAAAA+TGG + chr1_1:3540038-3540057 Msa0001820:CDS 25.0%
!! TTTACTTGATTTTCAGTGAA+TGG - chr1_1:3540086-3540105 None:intergenic 25.0%
! ACAAAAAATCAATGAGCAAT+TGG + chr1_1:3540154-3540173 Msa0001820:CDS 25.0%
! CAAAAAATCAATGAGCAATT+GGG + chr1_1:3540155-3540174 Msa0001820:CDS 25.0%
! AAAAAATCAATGAGCAATTG+GGG + chr1_1:3540156-3540175 Msa0001820:CDS 25.0%
! TTAGATGTTAGAGTAAACTA+CGG - chr1_1:3540453-3540472 None:intergenic 25.0%
! AACAATTCTTGAACATATGA+AGG + chr1_1:3540667-3540686 Msa0001820:CDS 25.0%
!! TTATGGTTTGGAAAATTTGA+CGG + chr1_1:3540835-3540854 Msa0001820:intron 25.0%
! TCTTGGTTTAATTAATGGTA+TGG - chr1_1:3541121-3541140 None:intergenic 25.0%
! TAGTGTACAATTTATTGTCT+TGG - chr1_1:3541138-3541157 None:intergenic 25.0%
! AAATAAACATCAACAAGAAC+AGG + chr1_1:3541248-3541267 Msa0001820:CDS 25.0%
! CAATTAGTATATCTTGTGTT+AGG - chr1_1:3542206-3542225 None:intergenic 25.0%
TCAATGCTATTGAGAAAACA+TGG + chr1_1:3539611-3539630 Msa0001820:CDS 30.0%
! CTTTTGTGCTATCAAATTCA+AGG - chr1_1:3539786-3539805 None:intergenic 30.0%
! CTTGAATTTGATAGCACAAA+AGG + chr1_1:3539784-3539803 Msa0001820:CDS 30.0%
!!! ACAAAAGGTGCATTTTGATT+TGG + chr1_1:3539799-3539818 Msa0001820:CDS 30.0%
AAATCAAATGAATCCATGTC+CGG - chr1_1:3539845-3539864 None:intergenic 30.0%
ATCATTAAAGTGACATGTAG+CGG + chr1_1:3540500-3540519 Msa0001820:intron 30.0%
!!! CTCTGTTTATTTTTTTCCAG+AGG + chr1_1:3540634-3540653 Msa0001820:intron 30.0%
!!! TGTTTATTTTTTTCCAGAGG+CGG + chr1_1:3540637-3540656 Msa0001820:intron 30.0%
! TATGGTTTGGAAAATTTGAC+GGG + chr1_1:3540836-3540855 Msa0001820:intron 30.0%
TTCTGCTCGATTAAGTATTA+TGG - chr1_1:3541056-3541075 None:intergenic 30.0%
ACAAGAACTTTAACATTGGC+TGG - chr1_1:3539568-3539587 None:intergenic 35.0%
TGGTCTCAATTCAATTACCA+AGG + chr1_1:3539631-3539650 Msa0001820:CDS 35.0%
!! TGTTCTGAAGGATCAACAAA+TGG + chr1_1:3540014-3540033 Msa0001820:CDS 35.0%
GCTGTTAGGAAAATGATGAA+AGG + chr1_1:3540122-3540141 Msa0001820:CDS 35.0%
AATCATCTCTTGCCCTTATT+TGG - chr1_1:3540193-3540212 None:intergenic 35.0%
TCTTCTTTGTCTTCTTTGTC+CGG - chr1_1:3540277-3540296 None:intergenic 35.0%
AATAGGTAAAGAATGCGTAC+TGG - chr1_1:3540399-3540418 None:intergenic 35.0%
ATTACCAGTTTACCCTGAAA+AGG + chr1_1:3540961-3540980 Msa0001820:intron 35.0%
!! TTTGAGTTAGCTCCTTTTCA+GGG - chr1_1:3540976-3540995 None:intergenic 35.0%
!!! TTTTGAGTTAGCTCCTTTTC+AGG - chr1_1:3540977-3540996 None:intergenic 35.0%
CTGTATTGAAATCATCACAG+TGG + chr1_1:3541313-3541332 Msa0001820:CDS 35.0%
TGCAGAACAACAATATCCAA+TGG + chr1_1:3541353-3541372 Msa0001820:CDS 35.0%
CAACAATATCCAATGGCATA+TGG + chr1_1:3541360-3541379 Msa0001820:CDS 35.0%
TTCCCAGAAAATTGATACCA+AGG + chr1_1:3541400-3541419 Msa0001820:CDS 35.0%
! TGCCTTGGTATCAATTTTCT+GGG - chr1_1:3541405-3541424 None:intergenic 35.0%
! ATGCCTTGGTATCAATTTTC+TGG - chr1_1:3541406-3541425 None:intergenic 35.0%
TTATGATGTTCTTGTTGCTG+AGG - chr1_1:3541567-3541586 None:intergenic 35.0%
TTGACTGCATTATTCATCTG+AGG - chr1_1:3541615-3541634 None:intergenic 35.0%
TCAACCTAAAAAGCTAGGAA+GGG + chr1_1:3542037-3542056 Msa0001820:CDS 35.0%
ACTACTTGAAGCTGAAATGC+CGG + chr1_1:3539823-3539842 Msa0001820:CDS 40.0%
ATATGTGGCATCATGCTGTT+AGG + chr1_1:3540108-3540127 Msa0001820:CDS 40.0%
AATGAGCAATTGGGGATTGA+GGG + chr1_1:3540164-3540183 Msa0001820:CDS 40.0%
GATTGAGGGTAGCCAAATAA+GGG + chr1_1:3540178-3540197 Msa0001820:CDS 40.0%
ACGCTTAAACGATGTACCAT+CGG + chr1_1:3540220-3540239 Msa0001820:CDS 40.0%
AACGATGTACCATCGGAAAA+AGG + chr1_1:3540227-3540246 Msa0001820:CDS 40.0%
TTCTTTGTCTTCTTTGTCCG+GGG - chr1_1:3540275-3540294 None:intergenic 40.0%
CTTCTTTGTCTTCTTTGTCC+GGG - chr1_1:3540276-3540295 None:intergenic 40.0%
ATGTTGCATATCCATGATGC+AGG - chr1_1:3541452-3541471 None:intergenic 40.0%
TGCATCATGGATATGCAACA+TGG + chr1_1:3541451-3541470 Msa0001820:CDS 40.0%
GCATCATGGATATGCAACAT+GGG + chr1_1:3541452-3541471 Msa0001820:CDS 40.0%
ACTGATCATGATCATGCAGT+TGG + chr1_1:3541504-3541523 Msa0001820:CDS 40.0%
!! AGTTGGTCTTGGAAACTTGA+TGG + chr1_1:3541521-3541540 Msa0001820:CDS 40.0%
! ACATGCATTGGTGATTGTTG+TGG - chr1_1:3541591-3541610 None:intergenic 40.0%
TTCATCTGAGGAACATGCAT+TGG - chr1_1:3541603-3541622 None:intergenic 40.0%
TCAAGATCAAGAGCTAGGAA+GGG + chr1_1:3541761-3541780 Msa0001820:CDS 40.0%
TCAACATCAAGAGCTAGGAA+GGG + chr1_1:3541881-3541900 Msa0001820:CDS 40.0%
TCAGACTCGAAAGCTAAGAA+GGG + chr1_1:3541959-3541978 Msa0001820:CDS 40.0%
!!! AGCTTTTTAGGTTGAGCATG+TGG - chr1_1:3542032-3542051 None:intergenic 40.0%
CATGCTCAACCTAAAAAGCT+AGG + chr1_1:3542032-3542051 Msa0001820:CDS 40.0%
CTCAACCTAAAAAGCTAGGA+AGG + chr1_1:3542036-3542055 Msa0001820:CDS 40.0%
CAATGAGCAATTGGGGATTG+AGG + chr1_1:3540163-3540182 Msa0001820:CDS 45.0%
GGATTGAGGGTAGCCAAATA+AGG + chr1_1:3540177-3540196 Msa0001820:CDS 45.0%
! TCTTCGTCACCTTTTTCCGA+TGG - chr1_1:3540239-3540258 None:intergenic 45.0%
GAAGACGAAGAAGACGAAGA+AGG + chr1_1:3540301-3540320 Msa0001820:CDS 45.0%
!!! ATTGTTTTTGGTACCGCCTC+TGG - chr1_1:3540653-3540672 None:intergenic 45.0%
!! TGAAGGTGCCTAGACTTACA+AGG + chr1_1:3540684-3540703 Msa0001820:CDS 45.0%
!! GAAGGTGCCTAGACTTACAA+GGG + chr1_1:3540685-3540704 Msa0001820:CDS 45.0%
!! AGCTCCTTTTCAGGGTAAAC+TGG - chr1_1:3540968-3540987 None:intergenic 45.0%
TACAGCAGCATGTGAACTGT+TGG - chr1_1:3541298-3541317 None:intergenic 45.0%
GAACTGCAACCATATGCCAT+TGG - chr1_1:3541372-3541391 None:intergenic 45.0%
! CATGATCATGCAGTTGGTCT+TGG + chr1_1:3541510-3541529 Msa0001820:CDS 45.0%
CAATGATGTTGTACCGAGTG+TGG + chr1_1:3541632-3541651 Msa0001820:CDS 45.0%
TGAAGCTACAATGCAAGTGG+AGG + chr1_1:3541695-3541714 Msa0001820:CDS 45.0%
! CTTCCTAGCTCTTGATCTTG+AGG - chr1_1:3541762-3541781 None:intergenic 45.0%
CTCAAGATCAAGAGCTAGGA+AGG + chr1_1:3541760-3541779 Msa0001820:CDS 45.0%
CTCAACATCAAGAGCTAGGA+AGG + chr1_1:3541880-3541899 Msa0001820:CDS 45.0%
CTCAGACTCGAAAGCTAAGA+AGG + chr1_1:3541958-3541977 Msa0001820:CDS 45.0%
ACCTAAAAAGCTAGGAAGGG+TGG + chr1_1:3542040-3542059 Msa0001820:CDS 45.0%
!! ACCACCCTTCCTAGCTTTTT+AGG - chr1_1:3542044-3542063 None:intergenic 45.0%
TAAAAAGCTAGGAAGGGTGG+TGG + chr1_1:3542043-3542062 Msa0001820:CDS 45.0%
!!! TAGCTTTTGAGGCTGAGCTT+GGG - chr1_1:3542075-3542094 None:intergenic 45.0%
TCAGCCTCAAAAGCTAGGAA+GGG + chr1_1:3542079-3542098 Msa0001820:CDS 45.0%
GGCTGGAAACTCATTCCCAA+AGG - chr1_1:3539551-3539570 None:intergenic 50.0%
TGAAGCTGAAATGCCGGACA+TGG + chr1_1:3539829-3539848 Msa0001820:CDS 50.0%
GCAGTGACGATGTGTTCTGA+AGG + chr1_1:3540002-3540021 Msa0001820:intron 50.0%
AAGATATACCCGAACCACCC+CGG + chr1_1:3540255-3540274 Msa0001820:CDS 50.0%
TTTGTCTTCTTTGTCCGGGG+TGG - chr1_1:3540272-3540291 None:intergenic 50.0%
CGAAGAAGACGAAGAAGGAG+CGG + chr1_1:3540306-3540325 Msa0001820:CDS 50.0%
GAAGAAGACGAAGAAGGAGC+GGG + chr1_1:3540307-3540326 Msa0001820:CDS 50.0%
ACCTGCTCCCTTGTAAGTCT+AGG - chr1_1:3540695-3540714 None:intergenic 50.0%
GCAGGTAGCTAGTCATCTTC+AGG + chr1_1:3540709-3540728 Msa0001820:CDS 50.0%
AGAACAGGAGCAAGCTCTCA+TGG + chr1_1:3541263-3541282 Msa0001820:CDS 50.0%
GGCTGATGAGGAAAATGCCT+TGG - chr1_1:3541420-3541439 None:intergenic 50.0%
CCATGATGCAGGTTCGTGTT+GGG - chr1_1:3541441-3541460 None:intergenic 50.0%
TCCATGATGCAGGTTCGTGT+TGG - chr1_1:3541442-3541461 None:intergenic 50.0%
TCCACGATGTTGTCCACACT+CGG - chr1_1:3541648-3541667 None:intergenic 50.0%
CGGTGAAGCTACAATGCAAG+TGG + chr1_1:3541692-3541711 Msa0001820:CDS 50.0%
GCTACAATGCAAGTGGAGGT+TGG + chr1_1:3541699-3541718 Msa0001820:CDS 50.0%
TCAGGTTCAAGAGCTGGGAA+GGG + chr1_1:3541725-3541744 Msa0001820:CDS 50.0%
GGTCCTCAAGATCAAGAGCT+AGG + chr1_1:3541756-3541775 Msa0001820:CDS 50.0%
AGATCAAGAGCTAGGAAGGG+TGG + chr1_1:3541764-3541783 Msa0001820:CDS 50.0%
TCAAGAGCTAGGAAGGATGG+CGG + chr1_1:3541809-3541828 Msa0001820:CDS 50.0%
! TTTCCTAGCTCTTGAGCCTG+AGG - chr1_1:3541840-3541859 None:intergenic 50.0%
TCAGGCTCAAGAGCTAGGAA+AGG + chr1_1:3541839-3541858 Msa0001820:CDS 50.0%
TCAAGAGCTAGGAAAGGTGG+TGG + chr1_1:3541845-3541864 Msa0001820:CDS 50.0%
CAGGCTCAACATCAAGAGCT+AGG + chr1_1:3541876-3541895 Msa0001820:CDS 50.0%
ACATCAAGAGCTAGGAAGGG+TGG + chr1_1:3541884-3541903 Msa0001820:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+TGG + chr1_1:3541803-3541822 Msa0001820:CDS 50.0%
! ACCACCATTCCTAGCTCTTG+AGG - chr1_1:3541930-3541949 None:intergenic 50.0%
TCAAGAGCTAGGAATGGTGG+TGG + chr1_1:3541929-3541948 Msa0001820:CDS 50.0%
GACTCGAAAGCTAAGAAGGG+TGG + chr1_1:3541962-3541981 Msa0001820:CDS 50.0%
TCGAAAGCTAAGAAGGGTGG+TGG + chr1_1:3541965-3541984 Msa0001820:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr1_1:3541839-3541858 Msa0001820:CDS 50.0%
!!! AGCTTTTGAGGCTGAGCTTG+GGG - chr1_1:3542074-3542093 None:intergenic 50.0%
!!! CTAGCTTTTGAGGCTGAGCT+TGG - chr1_1:3542076-3542095 None:intergenic 50.0%
CAAGCTCAGCCTCAAAAGCT+AGG + chr1_1:3542074-3542093 Msa0001820:CDS 50.0%
CTCAGCCTCAAAAGCTAGGA+AGG + chr1_1:3542078-3542097 Msa0001820:CDS 50.0%
CAGCCTCAAAAGCTAGGAAG+GGG + chr1_1:3542080-3542099 Msa0001820:CDS 50.0%
AGCCTCAAAAGCTAGGAAGG+GGG + chr1_1:3542081-3542100 Msa0001820:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG + chr1_1:3541839-3541858 Msa0001820:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+GGG + chr1_1:3541803-3541822 Msa0001820:CDS 50.0%
! TTTCCCCTTCCTAGCTCTTG+AGG - chr1_1:3542170-3542189 None:intergenic 50.0%
AAGAGCTAGGAAGGGGAAAG+AGG + chr1_1:3542171-3542190 Msa0001820:CDS 50.0%
TTCTTTGTCCGGGGTGGTTC+GGG - chr1_1:3540266-3540285 None:intergenic 55.0%
CTTCTTTGTCCGGGGTGGTT+CGG - chr1_1:3540267-3540286 None:intergenic 55.0%
GCCTAGACTTACAAGGGAGC+AGG + chr1_1:3540691-3540710 Msa0001820:CDS 55.0%
GGAGCAAGCTCTCATGGTTG+TGG + chr1_1:3541269-3541288 Msa0001820:CDS 55.0%
AGGTTCGTGTTGGGCTGATG+AGG - chr1_1:3541432-3541451 None:intergenic 55.0%
CCCAACACGAACCTGCATCA+TGG + chr1_1:3541438-3541457 Msa0001820:CDS 55.0%
ACCGAGTGTGGACAACATCG+TGG + chr1_1:3541644-3541663 Msa0001820:CDS 55.0%
TGGTCCTCAGGTTCAAGAGC+TGG + chr1_1:3541719-3541738 Msa0001820:CDS 55.0%
GGTCCTCAGGTTCAAGAGCT+GGG + chr1_1:3541720-3541739 Msa0001820:CDS 55.0%
CTTCCCAGCTCTTGAACCTG+AGG - chr1_1:3541726-3541745 None:intergenic 55.0%
CTCAGGTTCAAGAGCTGGGA+AGG + chr1_1:3541724-3541743 Msa0001820:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr1_1:3541767-3541786 Msa0001820:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG + chr1_1:3541802-3541821 Msa0001820:CDS 55.0%
GCCTCAAGAGCTAGGAAGGA+TGG + chr1_1:3541806-3541825 Msa0001820:CDS 55.0%
! GCCATCCTTCCTAGCTCTTG+AGG - chr1_1:3541810-3541829 None:intergenic 55.0%
GGCTCAAGAGCTAGGAAAGG+TGG + chr1_1:3541842-3541861 Msa0001820:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr1_1:3541767-3541786 Msa0001820:CDS 55.0%
AGCTCTTGAGGCTGAGCTTG+AGG - chr1_1:3541918-3541937 None:intergenic 55.0%
CAAGCTCAGCCTCAAGAGCT+AGG + chr1_1:3541918-3541937 Msa0001820:CDS 55.0%
GCCTCAAGAGCTAGGAATGG+TGG + chr1_1:3541926-3541945 Msa0001820:CDS 55.0%
! AAGCTAAGAAGGGTGGTGGC+TGG + chr1_1:3541969-3541988 Msa0001820:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG - chr1_1:3541996-3542015 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr1_1:3541838-3541857 Msa0001820:CDS 55.0%
GCCTCAAAAGCTAGGAAGGG+GGG + chr1_1:3542082-3542101 Msa0001820:CDS 55.0%
!! ACCCCCCTTCCTAGCTTTTG+AGG - chr1_1:3542086-3542105 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG + chr1_1:3541838-3541857 Msa0001820:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG + chr1_1:3541767-3541786 Msa0001820:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG + chr1_1:3541802-3541821 Msa0001820:CDS 55.0%
CAGCCTCAAGAGCTAGGAAG+GGG + chr1_1:3541804-3541823 Msa0001820:CDS 55.0%
GAAGACGAAGAAGGAGCGGG+TGG + chr1_1:3540310-3540329 Msa0001820:CDS 60.0%
CGAAGAAGGAGCGGGTGGTA+TGG + chr1_1:3540315-3540334 Msa0001820:CDS 60.0%
! GCAAGTGGAGGTTGGTCCTC+AGG + chr1_1:3541707-3541726 Msa0001820:CDS 60.0%
GGTTCAAGAGCTGGGAAGGG+TGG + chr1_1:3541728-3541747 Msa0001820:CDS 60.0%
TCAAGAGCTGGGAAGGGTGG+TGG + chr1_1:3541731-3541750 Msa0001820:CDS 60.0%
! GAGCTAGGAAGGGTGGTGGT+TGG + chr1_1:3541771-3541790 Msa0001820:CDS 60.0%
! AAGGGTGGTGGTTGGTCCTC+AGG + chr1_1:3541779-3541798 Msa0001820:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+AGG - chr1_1:3541798-3541817 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG + chr1_1:3541798-3541817 Msa0001820:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG + chr1_1:3541834-3541853 Msa0001820:CDS 60.0%
! AAAGGTGGTGGCTGCTCGTC+AGG + chr1_1:3541857-3541876 Msa0001820:CDS 60.0%
!! GAGCTAGGAATGGTGGTGGC+TGG + chr1_1:3541933-3541952 Msa0001820:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG + chr1_1:3541834-3541853 Msa0001820:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr1_1:3541998-3542017 Msa0001820:CDS 60.0%
! AAGCTAGGAAGGGTGGTGGC+TGG + chr1_1:3542047-3542066 Msa0001820:CDS 60.0%
AAGCTAGGAAGGGGGGTGAC+TGG + chr1_1:3542089-3542108 Msa0001820:CDS 60.0%
AGCTCTTGAGCCTGAGCCTG+AGG - chr1_1:3542116-3542135 None:intergenic 60.0%
CAGGCTCAGGCTCAAGAGCT+AGG + chr1_1:3542116-3542135 Msa0001820:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG + chr1_1:3541998-3542017 Msa0001820:CDS 60.0%
! AAGGGTGGTGGCTACTCCAC+AGG + chr1_1:3542139-3542158 Msa0001820:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+TGG - chr1_1:3541798-3541817 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG + chr1_1:3541798-3541817 Msa0001820:CDS 60.0%
! GAGCTAGGAAGGATGGCGGC+TGG + chr1_1:3541813-3541832 Msa0001820:CDS 65.0%
! AAGGATGGCGGCTGGTCCTC+AGG + chr1_1:3541821-3541840 Msa0001820:CDS 65.0%
! GAGCTAGGAAGGGTGGTGGC+TGG + chr1_1:3541891-3541910 Msa0001820:CDS 65.0%
! AAGGGTGGTGGCTGGTCCTC+AGG + chr1_1:3541743-3541762 Msa0001820:CDS 65.0%
! AAGGGGGGTGACTGGTCCTC+AGG + chr1_1:3542097-3542116 Msa0001820:CDS 65.0%
! GGTGACTGGTCCTCAGGCTC+AGG + chr1_1:3542103-3542122 Msa0001820:CDS 65.0%
! GAGCTGGGAAGGGTGGTGGC+TGG + chr1_1:3541735-3541754 Msa0001820:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3539538 3542226 3539538 ID=Msa0001820;Name=Msa0001820
chr1_1 mRNA 3539538 3542226 3539538 ID=Msa0001820-mRNA-1;Parent=Msa0001820;Name=Msa0001820-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|0.75|0.8|5|0|591
chr1_1 exon 3539538 3539652 3539538 ID=Msa0001820-mRNA-1:exon:981;Parent=Msa0001820-mRNA-1
chr1_1 exon 3539756 3539905 3539756 ID=Msa0001820-mRNA-1:exon:982;Parent=Msa0001820-mRNA-1
chr1_1 exon 3540006 3540398 3540006 ID=Msa0001820-mRNA-1:exon:983;Parent=Msa0001820-mRNA-1
chr1_1 exon 3540654 3540730 3540654 ID=Msa0001820-mRNA-1:exon:984;Parent=Msa0001820-mRNA-1
chr1_1 exon 3541186 3542226 3541186 ID=Msa0001820-mRNA-1:exon:985;Parent=Msa0001820-mRNA-1
chr1_1 CDS 3539538 3539652 3539538 ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1
chr1_1 CDS 3539756 3539905 3539756 ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1
chr1_1 CDS 3540006 3540398 3540006 ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1
chr1_1 CDS 3540654 3540730 3540654 ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1
chr1_1 CDS 3541186 3542226 3541186 ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1
Gene Sequence

>Msa0001820

ATGGATTTTTCCTTTGGGAATGAGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATCGATCTTCTCAATGCTATTGAGAAAACATGGTCTCAATTCAATTACCAAGTTACTACATGTTCGACAGTTTCTTCAGCCTTGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAGCTGAAATGCCGGACATGGATTCATTTGATTTCTTGCAAAAAATTACACAACAAGTCGATATTCCTGTCATTATGACGATGTGTTCTGAAGGATCAACAAATGGAATAATGAAGGCAATTGAAAATGGAGCTTGTGACTGTTTTGTCAAGCCATTCACTGAAAATCAAGTAAAGTATATGTGGCATCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGATTGAGGGTAGCCAAATAAGGGCAAGAGATGATTCAAATTTACGCTTAAACGATGTACCATCGGAAAAAGGTGACGAAGATATACCCGAACCACCCCGGACAAAGAAGACAAAGAAGAGAAAGAAGACGAAGAAGACGAAGAAGGAGCGGGTGGTATGGTCTTTAGAATTACATGAGAAATTCATGAATGCTGTTAAAGAACTTGATGCTTTCACTTCCAAGGCGGTACCAAAAACAATTCTTGAACATATGAAGGTGCCTAGACTTACAAGGGAGCAGGTAGCTAGTCATCTTCAGCATTTTGAAACTGTAATTTATACTGTTATATATTTCGATTTGCAGAAGTATAGACTGTATTTAAATAAACATCAACAAGAACAGGAGCAAGCTCTCATGGTTGTGGAATCCAACAGTTCACATGCTGCTGTATTGAAATCATCACAGTGGTCTCACAATTCTCATGTTGCAGAACAACAATATCCAATGGCATATGGTTGCAGTTCTCAACAAGTTCCCAGAAAATTGATACCAAGGCATTTTCCTCATCAGCCCAACACGAACCTGCATCATGGATATGCAACATGGGAGCAGCAATTTCCAAGTGAATATTATATAACTGATCATGATCATGCAGTTGGTCTTGGAAACTTGATGGCGAATAATAGTAATGCATTGCCTCAGCAACAAGAACATCATAATCCACAACAATCACCAATGCATGTTCCTCAGATGAATAATGCAGTCAATGATGTTGTACCGAGTGTGGACAACATCGTGGAAGTGAATAATACTGTAACAGATTTCGGTGAAGCTACAATGCAAGTGGAGGTTGGTCCTCAGGTTCAAGAGCTGGGAAGGGTGGTGGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGGTTGGTCCTCAGGCTCAGCCTCAAGAGCTAGGAAGGATGGCGGCTGGTCCTCAGGCTCAAGAGCTAGGAAAGGTGGTGGCTGCTCGTCAGGCTCAACATCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAATGGTGGTGGCTGGTTCTCAGACTCGAAAGCTAAGAAGGGTGGTGGCTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGCTGCTGCTCCACATGCTCAACCTAAAAAGCTAGGAAGGGTGGTGGCTGGTCCCCAAGCTCAGCCTCAAAAGCTAGGAAGGGGGGTGACTGGTCCTCAGGCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTACTCCACAGGCTCAGCCTCAAGAGCTAGGAAGGGGAAAGAGGTATAAGAAGCCTAACACAAGATATACTAATTGA

Protein sequence

>Msa0001820

MDFSFGNEFPANVKVLVIDHDIDLLNAIEKTWSQFNYQVTTCSTVSSALNLIAQKVHFDLVLLEAEMPDMDSFDFLQKITQQVDIPVIMTMCSEGSTNGIMKAIENGACDCFVKPFTENQVKYMWHHAVRKMMKGNKKQKINEQLGIEGSQIRARDDSNLRLNDVPSEKGDEDIPEPPRTKKTKKRKKTKKTKKERVVWSLELHEKFMNAVKELDAFTSKAVPKTILEHMKVPRLTREQVASHLQHFETVIYTVIYFDLQKYRLYLNKHQQEQEQALMVVESNSSHAAVLKSSQWSHNSHVAEQQYPMAYGCSSQQVPRKLIPRHFPHQPNTNLHHGYATWEQQFPSEYYITDHDHAVGLGNLMANNSNALPQQQEHHNPQQSPMHVPQMNNAVNDVVPSVDNIVEVNNTVTDFGEATMQVEVGPQVQELGRVVAGPQDQELGRVVVGPQAQPQELGRMAAGPQAQELGKVVAARQAQHQELGRVVAGPQAQPQELGMVVAGSQTRKLRRVVAGPQAQELGRVAAAPHAQPKKLGRVVAGPQAQPQKLGRGVTGPQAQAQELGRVVATPQAQPQELGRGKRYKKPNTRYTN*