Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001820 | sp|Q9FXD6|ARR11_ARATH | 36.364 | 275 | 140 | 6 | 10 | 274 | 8 | 257 | 8.36e-43 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0001820 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001820 | Msa0930750 | 0.818657 | 1.748688e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001820 | MtrunA17_Chr8g0391911 | 85.141 | 249 | 26 | 2 | 1 | 245 | 1 | 242 | 2.62e-131 | 384 |
| Msa0001820 | MtrunA17_Chr6g0456631 | 89.474 | 171 | 17 | 1 | 1 | 170 | 1 | 171 | 5.14e-109 | 324 |
| Msa0001820 | MtrunA17_Chr4g0009851 | 39.918 | 243 | 117 | 3 | 9 | 251 | 11 | 224 | 4.39e-54 | 186 |
| Msa0001820 | MtrunA17_Chr4g0009901 | 39.560 | 273 | 120 | 5 | 1 | 272 | 1 | 229 | 9.33e-52 | 179 |
| Msa0001820 | MtrunA17_Chr1g0161431 | 37.943 | 282 | 131 | 7 | 8 | 271 | 10 | 265 | 1.74e-47 | 176 |
| Msa0001820 | MtrunA17_Chr3g0123131 | 36.496 | 274 | 146 | 8 | 8 | 275 | 12 | 263 | 1.45e-43 | 164 |
| Msa0001820 | MtrunA17_Chr2g0294911 | 37.262 | 263 | 143 | 5 | 7 | 268 | 27 | 268 | 3.40e-42 | 160 |
| Msa0001820 | MtrunA17_Chr8g0376881 | 35.231 | 281 | 140 | 7 | 7 | 275 | 23 | 273 | 3.69e-41 | 156 |
| Msa0001820 | MtrunA17_Chr4g0067981 | 38.376 | 271 | 131 | 9 | 7 | 268 | 29 | 272 | 6.24e-41 | 157 |
| Msa0001820 | MtrunA17_Chr8g0383961 | 52.593 | 135 | 62 | 2 | 4 | 137 | 9 | 142 | 2.06e-40 | 147 |
| Msa0001820 | MtrunA17_Chr3g0137101 | 34.921 | 315 | 148 | 9 | 6 | 297 | 5 | 285 | 3.62e-40 | 155 |
| Msa0001820 | MtrunA17_Chr6g0471041 | 38.462 | 234 | 111 | 6 | 14 | 245 | 19 | 221 | 1.74e-39 | 149 |
| Msa0001820 | MtrunA17_Chr1g0149851 | 32.479 | 351 | 191 | 9 | 5 | 327 | 1 | 333 | 2.34e-39 | 151 |
| Msa0001820 | MtrunA17_Chr1g0149841 | 36.226 | 265 | 147 | 6 | 7 | 268 | 3 | 248 | 5.07e-38 | 147 |
| Msa0001820 | MtrunA17_Chr7g0275891 | 33.670 | 297 | 159 | 9 | 6 | 287 | 2 | 275 | 1.80e-36 | 139 |
| Msa0001820 | MtrunA17_Chr2g0304841 | 34.432 | 273 | 150 | 7 | 7 | 268 | 16 | 270 | 4.16e-33 | 134 |
| Msa0001820 | MtrunA17_Chr4g0074401 | 33.730 | 252 | 150 | 6 | 5 | 248 | 13 | 255 | 2.27e-32 | 132 |
| Msa0001820 | MtrunA17_Chr4g0074411 | 32.549 | 255 | 136 | 6 | 9 | 247 | 18 | 252 | 1.45e-31 | 129 |
| Msa0001820 | MtrunA17_Chr4g0009981 | 35.500 | 200 | 100 | 3 | 52 | 251 | 1 | 171 | 5.06e-31 | 121 |
| Msa0001820 | MtrunA17_Chr7g0275401 | 31.579 | 266 | 154 | 6 | 5 | 256 | 1 | 252 | 1.15e-30 | 121 |
| Msa0001820 | MtrunA17_Chr4g0074421 | 35.106 | 188 | 115 | 4 | 58 | 245 | 2 | 182 | 1.11e-25 | 104 |
| Msa0001820 | MtrunA17_Chr3g0134461 | 33.603 | 247 | 107 | 7 | 1 | 245 | 1 | 192 | 2.07e-25 | 103 |
| Msa0001820 | MtrunA17_Chr4g0011071 | 34.161 | 161 | 79 | 2 | 54 | 214 | 35 | 168 | 5.73e-25 | 102 |
| Msa0001820 | MtrunA17_Chr1g0149831 | 35.784 | 204 | 107 | 5 | 67 | 268 | 1 | 182 | 6.21e-25 | 103 |
| Msa0001820 | MtrunA17_Chr4g0010001 | 48.750 | 80 | 41 | 0 | 9 | 88 | 10 | 89 | 4.45e-22 | 90.9 |
| Msa0001820 | MtrunA17_Chr5g0423031 | 50.000 | 80 | 40 | 0 | 9 | 88 | 10 | 89 | 1.33e-19 | 87.0 |
| Msa0001820 | MtrunA17_Chr3g0134481 | 36.220 | 127 | 79 | 2 | 5 | 130 | 4 | 129 | 2.51e-19 | 86.3 |
| Msa0001820 | MtrunA17_Chr8g0350761 | 25.681 | 257 | 166 | 5 | 11 | 247 | 19 | 270 | 6.00e-16 | 80.9 |
| Msa0001820 | MtrunA17_Chr4g0009991 | 35.862 | 145 | 64 | 3 | 101 | 245 | 1 | 116 | 7.10e-16 | 74.3 |
| Msa0001820 | MtrunA17_Chr7g0223971 | 30.645 | 186 | 83 | 5 | 100 | 254 | 10 | 180 | 1.49e-12 | 70.1 |
| Msa0001820 | MtrunA17_Chr6g0473731 | 28.824 | 170 | 91 | 4 | 89 | 254 | 10 | 153 | 6.53e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001820 | AT1G67710.1 | 36.364 | 275 | 140 | 6 | 10 | 274 | 8 | 257 | 8.50e-44 | 164 |
| Msa0001820 | AT2G01760.1 | 35.540 | 287 | 146 | 8 | 5 | 276 | 3 | 265 | 8.15e-42 | 155 |
| Msa0001820 | AT3G16857.1 | 34.495 | 287 | 136 | 9 | 9 | 268 | 33 | 294 | 2.58e-37 | 147 |
| Msa0001820 | AT3G16857.2 | 34.495 | 287 | 136 | 9 | 9 | 268 | 33 | 294 | 3.64e-37 | 147 |
| Msa0001820 | AT2G01760.2 | 32.381 | 315 | 146 | 9 | 5 | 276 | 3 | 293 | 4.79e-36 | 140 |
| Msa0001820 | AT2G25180.1 | 33.730 | 252 | 154 | 5 | 7 | 254 | 11 | 253 | 7.12e-36 | 142 |
| Msa0001820 | AT4G31920.1 | 33.962 | 265 | 124 | 7 | 7 | 254 | 11 | 241 | 6.94e-34 | 136 |
| Msa0001820 | AT5G49240.1 | 32.090 | 268 | 165 | 6 | 5 | 265 | 34 | 291 | 1.75e-32 | 127 |
| Msa0001820 | AT5G58080.1 | 35.662 | 272 | 151 | 7 | 7 | 277 | 12 | 260 | 2.25e-32 | 132 |
| Msa0001820 | AT1G67710.2 | 36.866 | 217 | 103 | 5 | 67 | 274 | 1 | 192 | 7.52e-32 | 129 |
| Msa0001820 | AT3G16857.3 | 34.677 | 248 | 110 | 9 | 48 | 268 | 2 | 224 | 6.58e-29 | 122 |
| Msa0001820 | AT2G01760.3 | 35.268 | 224 | 107 | 7 | 67 | 276 | 1 | 200 | 2.90e-27 | 112 |
| Msa0001820 | AT1G49190.1 | 31.474 | 251 | 156 | 7 | 4 | 245 | 25 | 268 | 3.77e-27 | 114 |
| Msa0001820 | AT3G62670.1 | 33.333 | 240 | 140 | 8 | 14 | 247 | 42 | 267 | 1.26e-26 | 113 |
| Msa0001820 | AT1G67710.3 | 34.518 | 197 | 96 | 4 | 87 | 274 | 11 | 183 | 2.94e-24 | 106 |
| Msa0001820 | AT1G49190.2 | 33.588 | 131 | 85 | 2 | 4 | 133 | 25 | 154 | 5.83e-17 | 85.1 |
| Msa0001820 | AT1G68210.1 | 28.571 | 280 | 164 | 9 | 8 | 256 | 8 | 282 | 1.53e-15 | 80.5 |
| Msa0001820 | AT5G07210.2 | 23.729 | 354 | 210 | 12 | 13 | 339 | 16 | 336 | 1.13e-14 | 77.8 |
| Msa0001820 | AT5G07210.1 | 23.204 | 362 | 210 | 13 | 13 | 339 | 16 | 344 | 2.44e-12 | 70.1 |
Find 154 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATCTCTTGCCCTTATT+TGG | 0.189913 | 1_1:-3540190 | None:intergenic |
| TTCTTTGTCCGGGGTGGTTC+GGG | 0.278029 | 1_1:-3540263 | None:intergenic |
| CTTCTTTGTCCGGGGTGGTT+CGG | 0.314627 | 1_1:-3540264 | None:intergenic |
| GGATTGAGGGTAGCCAAATA+AGG | 0.317246 | 1_1:+3540177 | Msa0001820:CDS |
| GGTGACTGGTCCTCAGGCTC+AGG | 0.325098 | 1_1:+3542103 | Msa0001820:CDS |
| AACGATGTACCATCGGAAAA+AGG | 0.331149 | 1_1:+3540227 | Msa0001820:CDS |
| AATAATACTGTAACAGATTT+CGG | 0.331250 | 1_1:+3541672 | Msa0001820:CDS |
| TCTTCTTTGTCTTCTTTGTC+CGG | 0.340590 | 1_1:-3540274 | None:intergenic |
| CAATTAGTATATCTTGTGTT+AGG | 0.345112 | 1_1:-3542203 | None:intergenic |
| ATAATGAAGGCAATTGAAAA+TGG | 0.347793 | 1_1:+3540038 | Msa0001820:CDS |
| AAGGGTGGTGGTTGGTCCTC+AGG | 0.351815 | 1_1:+3541779 | Msa0001820:CDS |
| AAGGGTGGTGGCTGGTCCTC+AGG | 0.380509 | 1_1:+3541977 | Msa0001820:CDS |
| AAAGGTGGTGGCTGCTCGTC+AGG | 0.385388 | 1_1:+3541857 | Msa0001820:CDS |
| CTTCTTTGTCTTCTTTGTCC+GGG | 0.397717 | 1_1:-3540273 | None:intergenic |
| GCAGGTAGCTAGTCATCTTC+AGG | 0.404754 | 1_1:+3540709 | Msa0001820:CDS |
| CTTGAATTTGATAGCACAAA+AGG | 0.421977 | 1_1:+3539784 | Msa0001820:CDS |
| CATGATCATGCAGTTGGTCT+TGG | 0.425207 | 1_1:+3541510 | Msa0001820:CDS |
| GAGCTGGGAAGGGTGGTGGC+TGG | 0.425258 | 1_1:+3541735 | Msa0001820:CDS |
| AAGGATGGCGGCTGGTCCTC+AGG | 0.425842 | 1_1:+3541821 | Msa0001820:CDS |
| GCAAGTGGAGGTTGGTCCTC+AGG | 0.426953 | 1_1:+3541707 | Msa0001820:CDS |
| ACAAGAACTTTAACATTGGC+TGG | 0.429953 | 1_1:-3539565 | None:intergenic |
| CTCAGCCTCAAGAGCTAGGA+AGG | 0.439395 | 1_1:+3542162 | Msa0001820:CDS |
| ATATGTGGCATCATGCTGTT+AGG | 0.443627 | 1_1:+3540108 | Msa0001820:CDS |
| CTCAGGCTCAAGAGCTAGGA+AGG | 0.446172 | 1_1:+3542120 | Msa0001820:CDS |
| CTCAGACTCGAAAGCTAAGA+AGG | 0.449485 | 1_1:+3541958 | Msa0001820:CDS |
| CAACAATATCCAATGGCATA+TGG | 0.455357 | 1_1:+3541360 | Msa0001820:CDS |
| AAATAAACATCAACAAGAAC+AGG | 0.463567 | 1_1:+3541248 | Msa0001820:CDS |
| AACACAAGATATACTAATTG+AGG | 0.466931 | 1_1:+3542206 | Msa0001820:CDS |
| CTCAGCCTCAAGAGCTAGGA+AGG | 0.474289 | 1_1:+3541802 | Msa0001820:CDS |
| TCAAGAGCTGGGAAGGGTGG+TGG | 0.474375 | 1_1:+3541731 | Msa0001820:CDS |
| CTCAGGTTCAAGAGCTGGGA+AGG | 0.474845 | 1_1:+3541724 | Msa0001820:CDS |
| CTCAGCCTCAAAAGCTAGGA+AGG | 0.475835 | 1_1:+3542078 | Msa0001820:CDS |
| CTCAAGATCAAGAGCTAGGA+AGG | 0.478408 | 1_1:+3541760 | Msa0001820:CDS |
| CTCAACATCAAGAGCTAGGA+AGG | 0.478408 | 1_1:+3541880 | Msa0001820:CDS |
| CTCAGGCTCAAGAGCTAGGA+AGG | 0.478532 | 1_1:+3541994 | Msa0001820:CDS |
| GATTGAGGGTAGCCAAATAA+GGG | 0.479725 | 1_1:+3540178 | Msa0001820:CDS |
| AACAATTCTTGAACATATGA+AGG | 0.483635 | 1_1:+3540667 | Msa0001820:CDS |
| TATATTTACTTACTAATGAC+AGG | 0.483959 | 1_1:-3539896 | None:intergenic |
| TGGTCCTCAGGTTCAAGAGC+TGG | 0.485261 | 1_1:+3541719 | Msa0001820:CDS |
| AATGAGCAATTGGGGATTGA+GGG | 0.485917 | 1_1:+3540164 | Msa0001820:CDS |
| TACAGCAGCATGTGAACTGT+TGG | 0.487233 | 1_1:-3541295 | None:intergenic |
| CAATGAGCAATTGGGGATTG+AGG | 0.491122 | 1_1:+3540163 | Msa0001820:CDS |
| CCATGATGCAGGTTCGTGTT+GGG | 0.494378 | 1_1:-3541438 | None:intergenic |
| TGTTCTGAAGGATCAACAAA+TGG | 0.496320 | 1_1:+3540014 | Msa0001820:CDS |
| TTTCCCCTTCCTAGCTCTTG+AGG | 0.499640 | 1_1:-3542167 | None:intergenic |
| AGCTCTTGAGGCTGAGCTTG+AGG | 0.500477 | 1_1:-3541915 | None:intergenic |
| AAGGGTGGTGGCTACTCCAC+AGG | 0.505062 | 1_1:+3542139 | Msa0001820:CDS |
| TCCATGATGCAGGTTCGTGT+TGG | 0.506466 | 1_1:-3541439 | None:intergenic |
| ATCAACAAATGGAATAATGA+AGG | 0.507137 | 1_1:+3540025 | Msa0001820:CDS |
| CTTCCTAGCTCTTGATCTTG+AGG | 0.508572 | 1_1:-3541759 | None:intergenic |
| CGAAGAAGGAGCGGGTGGTA+TGG | 0.509910 | 1_1:+3540315 | Msa0001820:CDS |
| TGAAGCTGAAATGCCGGACA+TGG | 0.511513 | 1_1:+3539829 | Msa0001820:CDS |
| AAGAGCTAGGAAGGGGAAAG+AGG | 0.511686 | 1_1:+3542171 | Msa0001820:CDS |
| GAGCTAGGAATGGTGGTGGC+TGG | 0.512918 | 1_1:+3541933 | Msa0001820:CDS |
| TTCATCTGAGGAACATGCAT+TGG | 0.513254 | 1_1:-3541600 | None:intergenic |
| GGAGCAAGCTCTCATGGTTG+TGG | 0.514199 | 1_1:+3541269 | Msa0001820:CDS |
| GAAGAAGACGAAGAAGGAGC+GGG | 0.515637 | 1_1:+3540307 | Msa0001820:CDS |
| GCCTAGACTTACAAGGGAGC+AGG | 0.518181 | 1_1:+3540691 | Msa0001820:CDS |
| GGTCCTCAGGCTCAAGAGCT+AGG | 0.520740 | 1_1:+3541834 | Msa0001820:CDS |
| GGTCCTCAGGCTCAAGAGCT+AGG | 0.520740 | 1_1:+3541990 | Msa0001820:CDS |
| CAAGCTCAGCCTCAAAAGCT+AGG | 0.520799 | 1_1:+3542074 | Msa0001820:CDS |
| AGCTCTTGAGGCTGAGCCTG+TGG | 0.521609 | 1_1:-3542155 | None:intergenic |
| CAGGCTCAGGCTCAAGAGCT+AGG | 0.522151 | 1_1:+3542116 | Msa0001820:CDS |
| CAAGCTCAGCCTCAAGAGCT+AGG | 0.524513 | 1_1:+3541918 | Msa0001820:CDS |
| AAAATCAAGTAAAGTATATG+TGG | 0.524588 | 1_1:+3540093 | Msa0001820:CDS |
| AGTTGGTCTTGGAAACTTGA+TGG | 0.528215 | 1_1:+3541521 | Msa0001820:CDS |
| AATCACAAGAACTTTAACAT+TGG | 0.529369 | 1_1:-3539569 | None:intergenic |
| CAGGCTCAGCCTCAAGAGCT+AGG | 0.529994 | 1_1:+3541798 | Msa0001820:CDS |
| CAGGCTCAGCCTCAAGAGCT+AGG | 0.529994 | 1_1:+3542158 | Msa0001820:CDS |
| AGAACAGGAGCAAGCTCTCA+TGG | 0.536290 | 1_1:+3541263 | Msa0001820:CDS |
| GCCTCAAGAGCTAGGAAGGA+TGG | 0.540507 | 1_1:+3541806 | Msa0001820:CDS |
| TCCACGATGTTGTCCACACT+CGG | 0.540582 | 1_1:-3541645 | None:intergenic |
| GAGCTAGGAAGGGTGGTGGC+TGG | 0.541935 | 1_1:+3541891 | Msa0001820:CDS |
| ACACAAGATATACTAATTGA+GGG | 0.543203 | 1_1:+3542207 | Msa0001820:CDS |
| GGTCCTCAGGTTCAAGAGCT+GGG | 0.544277 | 1_1:+3541720 | Msa0001820:CDS |
| TTCTTTGTCTTCTTTGTCCG+GGG | 0.544906 | 1_1:-3540272 | None:intergenic |
| AAATCAAATGAATCCATGTC+CGG | 0.545425 | 1_1:-3539842 | None:intergenic |
| GAAGACGAAGAAGACGAAGA+AGG | 0.546374 | 1_1:+3540301 | Msa0001820:CDS |
| AGCTCTTGAGGCTGAGCCTG+AGG | 0.546926 | 1_1:-3541795 | None:intergenic |
| AGCTCTTGAGCCTGAGCCTG+AGG | 0.546926 | 1_1:-3542113 | None:intergenic |
| ACATGCATTGGTGATTGTTG+TGG | 0.548414 | 1_1:-3541588 | None:intergenic |
| ACTGATCATGATCATGCAGT+TGG | 0.548759 | 1_1:+3541504 | Msa0001820:CDS |
| GGTTCAAGAGCTGGGAAGGG+TGG | 0.548919 | 1_1:+3541728 | Msa0001820:CDS |
| CCCAACACGAACCTGCATCA+TGG | 0.549931 | 1_1:+3541438 | Msa0001820:CDS |
| AAGCTAAGAAGGGTGGTGGC+TGG | 0.555418 | 1_1:+3541969 | Msa0001820:CDS |
| ATGTTGCATATCCATGATGC+AGG | 0.557330 | 1_1:-3541449 | None:intergenic |
| CAGGCTCAACATCAAGAGCT+AGG | 0.558850 | 1_1:+3541876 | Msa0001820:CDS |
| TTTGTCTTCTTTGTCCGGGG+TGG | 0.562381 | 1_1:-3540269 | None:intergenic |
| CAGCCTCAAAAGCTAGGAAG+GGG | 0.562802 | 1_1:+3542080 | Msa0001820:CDS |
| AAGCTAGGAAGGGTGGTGGC+TGG | 0.568049 | 1_1:+3542047 | Msa0001820:CDS |
| GGCTGATGAGGAAAATGCCT+TGG | 0.570075 | 1_1:-3541417 | None:intergenic |
| TTTCCTAGCTCTTGAGCCTG+AGG | 0.573303 | 1_1:-3541837 | None:intergenic |
| GAGCTAGGAAGGATGGCGGC+TGG | 0.575246 | 1_1:+3541813 | Msa0001820:CDS |
| TGAAGGTGCCTAGACTTACA+AGG | 0.576956 | 1_1:+3540684 | Msa0001820:CDS |
| ACCTGCTCCCTTGTAAGTCT+AGG | 0.577890 | 1_1:-3540692 | None:intergenic |
| GGCTCAAGAGCTAGGAAGGG+TGG | 0.577942 | 1_1:+3541998 | Msa0001820:CDS |
| TGCATCATGGATATGCAACA+TGG | 0.578384 | 1_1:+3541451 | Msa0001820:CDS |
| GGCTCAAGAGCTAGGAAAGG+TGG | 0.579566 | 1_1:+3541842 | Msa0001820:CDS |
| GCCTCAAGAGCTAGGAATGG+TGG | 0.580235 | 1_1:+3541926 | Msa0001820:CDS |
| CAGCCTCAAGAGCTAGGAAG+GGG | 0.581740 | 1_1:+3542164 | Msa0001820:CDS |
| GGTCCTCAAGATCAAGAGCT+AGG | 0.581757 | 1_1:+3541756 | Msa0001820:CDS |
| TTCCCAGAAAATTGATACCA+AGG | 0.582328 | 1_1:+3541400 | Msa0001820:CDS |
| GGCTCAAGAGCTAGGAAGGG+TGG | 0.582674 | 1_1:+3542124 | Msa0001820:CDS |
| CTTCCTAGCTCTTGAGCCTG+AGG | 0.585618 | 1_1:-3541993 | None:intergenic |
| ACTACTTGAAGCTGAAATGC+CGG | 0.587583 | 1_1:+3539823 | Msa0001820:CDS |
| GAGCTAGGAAGGGTGGTGGT+TGG | 0.591794 | 1_1:+3541771 | Msa0001820:CDS |
| TTATGATGTTCTTGTTGCTG+AGG | 0.596660 | 1_1:-3541564 | None:intergenic |
| TGGTCTCAATTCAATTACCA+AGG | 0.596923 | 1_1:+3539631 | Msa0001820:CDS |
| GCCTCAAAAGCTAGGAAGGG+GGG | 0.598080 | 1_1:+3542082 | Msa0001820:CDS |
| GCTGTTAGGAAAATGATGAA+AGG | 0.599623 | 1_1:+3540122 | Msa0001820:CDS |
| ACGCTTAAACGATGTACCAT+CGG | 0.602369 | 1_1:+3540220 | Msa0001820:CDS |
| GAACTGCAACCATATGCCAT+TGG | 0.602482 | 1_1:-3541369 | None:intergenic |
| TCAGCCTCAAAAGCTAGGAA+GGG | 0.606989 | 1_1:+3542079 | Msa0001820:CDS |
| GCTACAATGCAAGTGGAGGT+TGG | 0.607441 | 1_1:+3541699 | Msa0001820:CDS |
| GCCATCCTTCCTAGCTCTTG+AGG | 0.607945 | 1_1:-3541807 | None:intergenic |
| CGAAGAAGACGAAGAAGGAG+CGG | 0.608903 | 1_1:+3540306 | Msa0001820:CDS |
| TCGAAAGCTAAGAAGGGTGG+TGG | 0.609238 | 1_1:+3541965 | Msa0001820:CDS |
| CGGTGAAGCTACAATGCAAG+TGG | 0.610968 | 1_1:+3541692 | Msa0001820:CDS |
| CTTCCCAGCTCTTGAACCTG+AGG | 0.611183 | 1_1:-3541723 | None:intergenic |
| TTGACTGCATTATTCATCTG+AGG | 0.611554 | 1_1:-3541612 | None:intergenic |
| TCAAGAGCTAGGAAGGGTGG+TGG | 0.612518 | 1_1:+3541887 | Msa0001820:CDS |
| TCAGTTATATAATATTCACT+TGG | 0.614757 | 1_1:-3541486 | None:intergenic |
| GACTCGAAAGCTAAGAAGGG+TGG | 0.616097 | 1_1:+3541962 | Msa0001820:CDS |
| ACCACCATTCCTAGCTCTTG+AGG | 0.617365 | 1_1:-3541927 | None:intergenic |
| TCAGCCTCAAGAGCTAGGAA+GGG | 0.618998 | 1_1:+3542163 | Msa0001820:CDS |
| TCAAGAGCTAGGAAGGGTGG+TGG | 0.619733 | 1_1:+3541767 | Msa0001820:CDS |
| TCAGGCTCAAGAGCTAGGAA+GGG | 0.624572 | 1_1:+3542121 | Msa0001820:CDS |
| AAGATATACCCGAACCACCC+CGG | 0.626205 | 1_1:+3540255 | Msa0001820:CDS |
| TGCAGAACAACAATATCCAA+TGG | 0.629974 | 1_1:+3541353 | Msa0001820:CDS |
| GGCTGGAAACTCATTCCCAA+AGG | 0.633277 | 1_1:-3539548 | None:intergenic |
| CAATGATGTTGTACCGAGTG+TGG | 0.635078 | 1_1:+3541632 | Msa0001820:CDS |
| TCAGGTTCAAGAGCTGGGAA+GGG | 0.636064 | 1_1:+3541725 | Msa0001820:CDS |
| TCAAGAGCTAGGAAAGGTGG+TGG | 0.637451 | 1_1:+3541845 | Msa0001820:CDS |
| TCAAGAGCTAGGAATGGTGG+TGG | 0.637451 | 1_1:+3541929 | Msa0001820:CDS |
| TCAAGAGCTAGGAAGGGTGG+TGG | 0.638725 | 1_1:+3542127 | Msa0001820:CDS |
| TCAGACTCGAAAGCTAAGAA+GGG | 0.638931 | 1_1:+3541959 | Msa0001820:CDS |
| AGCCTCAAAAGCTAGGAAGG+GGG | 0.642823 | 1_1:+3542081 | Msa0001820:CDS |
| TCAGCCTCAAGAGCTAGGAA+TGG | 0.643593 | 1_1:+3541923 | Msa0001820:CDS |
| TCAATGCTATTGAGAAAACA+TGG | 0.646799 | 1_1:+3539611 | Msa0001820:CDS |
| AGATCAAGAGCTAGGAAGGG+TGG | 0.650678 | 1_1:+3541764 | Msa0001820:CDS |
| ACATCAAGAGCTAGGAAGGG+TGG | 0.650678 | 1_1:+3541884 | Msa0001820:CDS |
| AGGTTCGTGTTGGGCTGATG+AGG | 0.653657 | 1_1:-3541429 | None:intergenic |
| TCAGGCTCAAGAGCTAGGAA+AGG | 0.654595 | 1_1:+3541839 | Msa0001820:CDS |
| GAAGACGAAGAAGGAGCGGG+TGG | 0.656592 | 1_1:+3540310 | Msa0001820:CDS |
| GCATCATGGATATGCAACAT+GGG | 0.656904 | 1_1:+3541452 | Msa0001820:CDS |
| GAAGGTGCCTAGACTTACAA+GGG | 0.661563 | 1_1:+3540685 | Msa0001820:CDS |
| TGAAGCTACAATGCAAGTGG+AGG | 0.663678 | 1_1:+3541695 | Msa0001820:CDS |
| ACCGAGTGTGGACAACATCG+TGG | 0.681310 | 1_1:+3541644 | Msa0001820:CDS |
| TCAGGCTCAAGAGCTAGGAA+GGG | 0.685952 | 1_1:+3541995 | Msa0001820:CDS |
| GCAGTGACGATGTGTTCTGA+AGG | 0.690924 | 1_1:+3540002 | Msa0001820:intron |
| TCAACATCAAGAGCTAGGAA+GGG | 0.691703 | 1_1:+3541881 | Msa0001820:CDS |
| TCAAGATCAAGAGCTAGGAA+GGG | 0.696103 | 1_1:+3541761 | Msa0001820:CDS |
| CTGTATTGAAATCATCACAG+TGG | 0.740386 | 1_1:+3541313 | Msa0001820:CDS |
| TCAAGAGCTAGGAAGGATGG+CGG | 0.754981 | 1_1:+3541809 | Msa0001820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAAAAATTTGATTATTTA+TGG | + | chr1_1:3540818-3540837 | Msa0001820:intron | 10.0% |
| !!! | ACATATTATTAATCTTTTAT+AGG | + | chr1_1:3540886-3540905 | Msa0001820:intron | 10.0% |
| !! | ATATATTAATTTACAAACCT+TGG | - | chr1_1:3539651-3539670 | None:intergenic | 15.0% |
| !! | AAGGTTTGTAAATTAATATA+TGG | + | chr1_1:3539650-3539669 | Msa0001820:intron | 15.0% |
| !! | AAAGTTTAAATTTCAAAGAA+CGG | - | chr1_1:3540751-3540770 | None:intergenic | 15.0% |
| !! | TGTCAAAAATGAATAAATAA+AGG | + | chr1_1:3540781-3540800 | Msa0001820:intron | 15.0% |
| !! | AAATTTGATTATTTATGGTT+TGG | + | chr1_1:3540823-3540842 | Msa0001820:intron | 15.0% |
| !! | ATTCAATTAACAATCAAAGA+AGG | - | chr1_1:3539678-3539697 | None:intergenic | 20.0% |
| !! | TATATTTACTTACTAATGAC+AGG | - | chr1_1:3539899-3539918 | None:intergenic | 20.0% |
| !! | AAAATCAAGTAAAGTATATG+TGG | + | chr1_1:3540093-3540112 | Msa0001820:CDS | 20.0% |
| !!! | CTTTTGATAAAAACAAGAAT+AGG | - | chr1_1:3540416-3540435 | None:intergenic | 20.0% |
| !!! | GATAGTGTAAAATTTGTTTT+TGG | + | chr1_1:3540549-3540568 | Msa0001820:intron | 20.0% |
| !!! | ATATGTTCAAGAATTGTTTT+TGG | - | chr1_1:3540665-3540684 | None:intergenic | 20.0% |
| !!! | AGGAATCTCAATATATTTTA+TGG | + | chr1_1:3540906-3540925 | Msa0001820:intron | 20.0% |
| !!! | ATTAGTCTTTAACTTTCATT+CGG | + | chr1_1:3540932-3540951 | Msa0001820:intron | 20.0% |
| !! | TATTGTCTTGGTTTAATTAA+TGG | - | chr1_1:3541126-3541145 | None:intergenic | 20.0% |
| !! | TCAGTTATATAATATTCACT+TGG | - | chr1_1:3541489-3541508 | None:intergenic | 20.0% |
| !! | AATAATACTGTAACAGATTT+CGG | + | chr1_1:3541672-3541691 | Msa0001820:CDS | 20.0% |
| ! | AATCACAAGAACTTTAACAT+TGG | - | chr1_1:3539572-3539591 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAGACTTTCAT+AGG | - | chr1_1:3539709-3539728 | None:intergenic | 25.0% |
| ! | ATCAACAAATGGAATAATGA+AGG | + | chr1_1:3540025-3540044 | Msa0001820:CDS | 25.0% |
| ! | ATAATGAAGGCAATTGAAAA+TGG | + | chr1_1:3540038-3540057 | Msa0001820:CDS | 25.0% |
| !! | TTTACTTGATTTTCAGTGAA+TGG | - | chr1_1:3540086-3540105 | None:intergenic | 25.0% |
| ! | ACAAAAAATCAATGAGCAAT+TGG | + | chr1_1:3540154-3540173 | Msa0001820:CDS | 25.0% |
| ! | CAAAAAATCAATGAGCAATT+GGG | + | chr1_1:3540155-3540174 | Msa0001820:CDS | 25.0% |
| ! | AAAAAATCAATGAGCAATTG+GGG | + | chr1_1:3540156-3540175 | Msa0001820:CDS | 25.0% |
| ! | TTAGATGTTAGAGTAAACTA+CGG | - | chr1_1:3540453-3540472 | None:intergenic | 25.0% |
| ! | AACAATTCTTGAACATATGA+AGG | + | chr1_1:3540667-3540686 | Msa0001820:CDS | 25.0% |
| !! | TTATGGTTTGGAAAATTTGA+CGG | + | chr1_1:3540835-3540854 | Msa0001820:intron | 25.0% |
| ! | TCTTGGTTTAATTAATGGTA+TGG | - | chr1_1:3541121-3541140 | None:intergenic | 25.0% |
| ! | TAGTGTACAATTTATTGTCT+TGG | - | chr1_1:3541138-3541157 | None:intergenic | 25.0% |
| ! | AAATAAACATCAACAAGAAC+AGG | + | chr1_1:3541248-3541267 | Msa0001820:CDS | 25.0% |
| ! | CAATTAGTATATCTTGTGTT+AGG | - | chr1_1:3542206-3542225 | None:intergenic | 25.0% |
| TCAATGCTATTGAGAAAACA+TGG | + | chr1_1:3539611-3539630 | Msa0001820:CDS | 30.0% | |
| ! | CTTTTGTGCTATCAAATTCA+AGG | - | chr1_1:3539786-3539805 | None:intergenic | 30.0% |
| ! | CTTGAATTTGATAGCACAAA+AGG | + | chr1_1:3539784-3539803 | Msa0001820:CDS | 30.0% |
| !!! | ACAAAAGGTGCATTTTGATT+TGG | + | chr1_1:3539799-3539818 | Msa0001820:CDS | 30.0% |
| AAATCAAATGAATCCATGTC+CGG | - | chr1_1:3539845-3539864 | None:intergenic | 30.0% | |
| ATCATTAAAGTGACATGTAG+CGG | + | chr1_1:3540500-3540519 | Msa0001820:intron | 30.0% | |
| !!! | CTCTGTTTATTTTTTTCCAG+AGG | + | chr1_1:3540634-3540653 | Msa0001820:intron | 30.0% |
| !!! | TGTTTATTTTTTTCCAGAGG+CGG | + | chr1_1:3540637-3540656 | Msa0001820:intron | 30.0% |
| ! | TATGGTTTGGAAAATTTGAC+GGG | + | chr1_1:3540836-3540855 | Msa0001820:intron | 30.0% |
| TTCTGCTCGATTAAGTATTA+TGG | - | chr1_1:3541056-3541075 | None:intergenic | 30.0% | |
| ACAAGAACTTTAACATTGGC+TGG | - | chr1_1:3539568-3539587 | None:intergenic | 35.0% | |
| TGGTCTCAATTCAATTACCA+AGG | + | chr1_1:3539631-3539650 | Msa0001820:CDS | 35.0% | |
| !! | TGTTCTGAAGGATCAACAAA+TGG | + | chr1_1:3540014-3540033 | Msa0001820:CDS | 35.0% |
| GCTGTTAGGAAAATGATGAA+AGG | + | chr1_1:3540122-3540141 | Msa0001820:CDS | 35.0% | |
| AATCATCTCTTGCCCTTATT+TGG | - | chr1_1:3540193-3540212 | None:intergenic | 35.0% | |
| TCTTCTTTGTCTTCTTTGTC+CGG | - | chr1_1:3540277-3540296 | None:intergenic | 35.0% | |
| AATAGGTAAAGAATGCGTAC+TGG | - | chr1_1:3540399-3540418 | None:intergenic | 35.0% | |
| ATTACCAGTTTACCCTGAAA+AGG | + | chr1_1:3540961-3540980 | Msa0001820:intron | 35.0% | |
| !! | TTTGAGTTAGCTCCTTTTCA+GGG | - | chr1_1:3540976-3540995 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTAGCTCCTTTTC+AGG | - | chr1_1:3540977-3540996 | None:intergenic | 35.0% |
| CTGTATTGAAATCATCACAG+TGG | + | chr1_1:3541313-3541332 | Msa0001820:CDS | 35.0% | |
| TGCAGAACAACAATATCCAA+TGG | + | chr1_1:3541353-3541372 | Msa0001820:CDS | 35.0% | |
| CAACAATATCCAATGGCATA+TGG | + | chr1_1:3541360-3541379 | Msa0001820:CDS | 35.0% | |
| TTCCCAGAAAATTGATACCA+AGG | + | chr1_1:3541400-3541419 | Msa0001820:CDS | 35.0% | |
| ! | TGCCTTGGTATCAATTTTCT+GGG | - | chr1_1:3541405-3541424 | None:intergenic | 35.0% |
| ! | ATGCCTTGGTATCAATTTTC+TGG | - | chr1_1:3541406-3541425 | None:intergenic | 35.0% |
| TTATGATGTTCTTGTTGCTG+AGG | - | chr1_1:3541567-3541586 | None:intergenic | 35.0% | |
| TTGACTGCATTATTCATCTG+AGG | - | chr1_1:3541615-3541634 | None:intergenic | 35.0% | |
| TCAACCTAAAAAGCTAGGAA+GGG | + | chr1_1:3542037-3542056 | Msa0001820:CDS | 35.0% | |
| ACTACTTGAAGCTGAAATGC+CGG | + | chr1_1:3539823-3539842 | Msa0001820:CDS | 40.0% | |
| ATATGTGGCATCATGCTGTT+AGG | + | chr1_1:3540108-3540127 | Msa0001820:CDS | 40.0% | |
| AATGAGCAATTGGGGATTGA+GGG | + | chr1_1:3540164-3540183 | Msa0001820:CDS | 40.0% | |
| GATTGAGGGTAGCCAAATAA+GGG | + | chr1_1:3540178-3540197 | Msa0001820:CDS | 40.0% | |
| ACGCTTAAACGATGTACCAT+CGG | + | chr1_1:3540220-3540239 | Msa0001820:CDS | 40.0% | |
| AACGATGTACCATCGGAAAA+AGG | + | chr1_1:3540227-3540246 | Msa0001820:CDS | 40.0% | |
| TTCTTTGTCTTCTTTGTCCG+GGG | - | chr1_1:3540275-3540294 | None:intergenic | 40.0% | |
| CTTCTTTGTCTTCTTTGTCC+GGG | - | chr1_1:3540276-3540295 | None:intergenic | 40.0% | |
| ATGTTGCATATCCATGATGC+AGG | - | chr1_1:3541452-3541471 | None:intergenic | 40.0% | |
| TGCATCATGGATATGCAACA+TGG | + | chr1_1:3541451-3541470 | Msa0001820:CDS | 40.0% | |
| GCATCATGGATATGCAACAT+GGG | + | chr1_1:3541452-3541471 | Msa0001820:CDS | 40.0% | |
| ACTGATCATGATCATGCAGT+TGG | + | chr1_1:3541504-3541523 | Msa0001820:CDS | 40.0% | |
| !! | AGTTGGTCTTGGAAACTTGA+TGG | + | chr1_1:3541521-3541540 | Msa0001820:CDS | 40.0% |
| ! | ACATGCATTGGTGATTGTTG+TGG | - | chr1_1:3541591-3541610 | None:intergenic | 40.0% |
| TTCATCTGAGGAACATGCAT+TGG | - | chr1_1:3541603-3541622 | None:intergenic | 40.0% | |
| TCAAGATCAAGAGCTAGGAA+GGG | + | chr1_1:3541761-3541780 | Msa0001820:CDS | 40.0% | |
| TCAACATCAAGAGCTAGGAA+GGG | + | chr1_1:3541881-3541900 | Msa0001820:CDS | 40.0% | |
| TCAGACTCGAAAGCTAAGAA+GGG | + | chr1_1:3541959-3541978 | Msa0001820:CDS | 40.0% | |
| !!! | AGCTTTTTAGGTTGAGCATG+TGG | - | chr1_1:3542032-3542051 | None:intergenic | 40.0% |
| CATGCTCAACCTAAAAAGCT+AGG | + | chr1_1:3542032-3542051 | Msa0001820:CDS | 40.0% | |
| CTCAACCTAAAAAGCTAGGA+AGG | + | chr1_1:3542036-3542055 | Msa0001820:CDS | 40.0% | |
| CAATGAGCAATTGGGGATTG+AGG | + | chr1_1:3540163-3540182 | Msa0001820:CDS | 45.0% | |
| GGATTGAGGGTAGCCAAATA+AGG | + | chr1_1:3540177-3540196 | Msa0001820:CDS | 45.0% | |
| ! | TCTTCGTCACCTTTTTCCGA+TGG | - | chr1_1:3540239-3540258 | None:intergenic | 45.0% |
| GAAGACGAAGAAGACGAAGA+AGG | + | chr1_1:3540301-3540320 | Msa0001820:CDS | 45.0% | |
| !!! | ATTGTTTTTGGTACCGCCTC+TGG | - | chr1_1:3540653-3540672 | None:intergenic | 45.0% |
| !! | TGAAGGTGCCTAGACTTACA+AGG | + | chr1_1:3540684-3540703 | Msa0001820:CDS | 45.0% |
| !! | GAAGGTGCCTAGACTTACAA+GGG | + | chr1_1:3540685-3540704 | Msa0001820:CDS | 45.0% |
| !! | AGCTCCTTTTCAGGGTAAAC+TGG | - | chr1_1:3540968-3540987 | None:intergenic | 45.0% |
| TACAGCAGCATGTGAACTGT+TGG | - | chr1_1:3541298-3541317 | None:intergenic | 45.0% | |
| GAACTGCAACCATATGCCAT+TGG | - | chr1_1:3541372-3541391 | None:intergenic | 45.0% | |
| ! | CATGATCATGCAGTTGGTCT+TGG | + | chr1_1:3541510-3541529 | Msa0001820:CDS | 45.0% |
| CAATGATGTTGTACCGAGTG+TGG | + | chr1_1:3541632-3541651 | Msa0001820:CDS | 45.0% | |
| TGAAGCTACAATGCAAGTGG+AGG | + | chr1_1:3541695-3541714 | Msa0001820:CDS | 45.0% | |
| ! | CTTCCTAGCTCTTGATCTTG+AGG | - | chr1_1:3541762-3541781 | None:intergenic | 45.0% |
| CTCAAGATCAAGAGCTAGGA+AGG | + | chr1_1:3541760-3541779 | Msa0001820:CDS | 45.0% | |
| CTCAACATCAAGAGCTAGGA+AGG | + | chr1_1:3541880-3541899 | Msa0001820:CDS | 45.0% | |
| CTCAGACTCGAAAGCTAAGA+AGG | + | chr1_1:3541958-3541977 | Msa0001820:CDS | 45.0% | |
| ACCTAAAAAGCTAGGAAGGG+TGG | + | chr1_1:3542040-3542059 | Msa0001820:CDS | 45.0% | |
| !! | ACCACCCTTCCTAGCTTTTT+AGG | - | chr1_1:3542044-3542063 | None:intergenic | 45.0% |
| TAAAAAGCTAGGAAGGGTGG+TGG | + | chr1_1:3542043-3542062 | Msa0001820:CDS | 45.0% | |
| !!! | TAGCTTTTGAGGCTGAGCTT+GGG | - | chr1_1:3542075-3542094 | None:intergenic | 45.0% |
| TCAGCCTCAAAAGCTAGGAA+GGG | + | chr1_1:3542079-3542098 | Msa0001820:CDS | 45.0% | |
| GGCTGGAAACTCATTCCCAA+AGG | - | chr1_1:3539551-3539570 | None:intergenic | 50.0% | |
| TGAAGCTGAAATGCCGGACA+TGG | + | chr1_1:3539829-3539848 | Msa0001820:CDS | 50.0% | |
| GCAGTGACGATGTGTTCTGA+AGG | + | chr1_1:3540002-3540021 | Msa0001820:intron | 50.0% | |
| AAGATATACCCGAACCACCC+CGG | + | chr1_1:3540255-3540274 | Msa0001820:CDS | 50.0% | |
| TTTGTCTTCTTTGTCCGGGG+TGG | - | chr1_1:3540272-3540291 | None:intergenic | 50.0% | |
| CGAAGAAGACGAAGAAGGAG+CGG | + | chr1_1:3540306-3540325 | Msa0001820:CDS | 50.0% | |
| GAAGAAGACGAAGAAGGAGC+GGG | + | chr1_1:3540307-3540326 | Msa0001820:CDS | 50.0% | |
| ACCTGCTCCCTTGTAAGTCT+AGG | - | chr1_1:3540695-3540714 | None:intergenic | 50.0% | |
| GCAGGTAGCTAGTCATCTTC+AGG | + | chr1_1:3540709-3540728 | Msa0001820:CDS | 50.0% | |
| AGAACAGGAGCAAGCTCTCA+TGG | + | chr1_1:3541263-3541282 | Msa0001820:CDS | 50.0% | |
| GGCTGATGAGGAAAATGCCT+TGG | - | chr1_1:3541420-3541439 | None:intergenic | 50.0% | |
| CCATGATGCAGGTTCGTGTT+GGG | - | chr1_1:3541441-3541460 | None:intergenic | 50.0% | |
| TCCATGATGCAGGTTCGTGT+TGG | - | chr1_1:3541442-3541461 | None:intergenic | 50.0% | |
| TCCACGATGTTGTCCACACT+CGG | - | chr1_1:3541648-3541667 | None:intergenic | 50.0% | |
| CGGTGAAGCTACAATGCAAG+TGG | + | chr1_1:3541692-3541711 | Msa0001820:CDS | 50.0% | |
| GCTACAATGCAAGTGGAGGT+TGG | + | chr1_1:3541699-3541718 | Msa0001820:CDS | 50.0% | |
| TCAGGTTCAAGAGCTGGGAA+GGG | + | chr1_1:3541725-3541744 | Msa0001820:CDS | 50.0% | |
| GGTCCTCAAGATCAAGAGCT+AGG | + | chr1_1:3541756-3541775 | Msa0001820:CDS | 50.0% | |
| AGATCAAGAGCTAGGAAGGG+TGG | + | chr1_1:3541764-3541783 | Msa0001820:CDS | 50.0% | |
| TCAAGAGCTAGGAAGGATGG+CGG | + | chr1_1:3541809-3541828 | Msa0001820:CDS | 50.0% | |
| ! | TTTCCTAGCTCTTGAGCCTG+AGG | - | chr1_1:3541840-3541859 | None:intergenic | 50.0% |
| TCAGGCTCAAGAGCTAGGAA+AGG | + | chr1_1:3541839-3541858 | Msa0001820:CDS | 50.0% | |
| TCAAGAGCTAGGAAAGGTGG+TGG | + | chr1_1:3541845-3541864 | Msa0001820:CDS | 50.0% | |
| CAGGCTCAACATCAAGAGCT+AGG | + | chr1_1:3541876-3541895 | Msa0001820:CDS | 50.0% | |
| ACATCAAGAGCTAGGAAGGG+TGG | + | chr1_1:3541884-3541903 | Msa0001820:CDS | 50.0% | |
| TCAGCCTCAAGAGCTAGGAA+TGG | + | chr1_1:3541803-3541822 | Msa0001820:CDS | 50.0% | |
| ! | ACCACCATTCCTAGCTCTTG+AGG | - | chr1_1:3541930-3541949 | None:intergenic | 50.0% |
| TCAAGAGCTAGGAATGGTGG+TGG | + | chr1_1:3541929-3541948 | Msa0001820:CDS | 50.0% | |
| GACTCGAAAGCTAAGAAGGG+TGG | + | chr1_1:3541962-3541981 | Msa0001820:CDS | 50.0% | |
| TCGAAAGCTAAGAAGGGTGG+TGG | + | chr1_1:3541965-3541984 | Msa0001820:CDS | 50.0% | |
| TCAGGCTCAAGAGCTAGGAA+GGG | + | chr1_1:3541839-3541858 | Msa0001820:CDS | 50.0% | |
| !!! | AGCTTTTGAGGCTGAGCTTG+GGG | - | chr1_1:3542074-3542093 | None:intergenic | 50.0% |
| !!! | CTAGCTTTTGAGGCTGAGCT+TGG | - | chr1_1:3542076-3542095 | None:intergenic | 50.0% |
| CAAGCTCAGCCTCAAAAGCT+AGG | + | chr1_1:3542074-3542093 | Msa0001820:CDS | 50.0% | |
| CTCAGCCTCAAAAGCTAGGA+AGG | + | chr1_1:3542078-3542097 | Msa0001820:CDS | 50.0% | |
| CAGCCTCAAAAGCTAGGAAG+GGG | + | chr1_1:3542080-3542099 | Msa0001820:CDS | 50.0% | |
| AGCCTCAAAAGCTAGGAAGG+GGG | + | chr1_1:3542081-3542100 | Msa0001820:CDS | 50.0% | |
| TCAGGCTCAAGAGCTAGGAA+GGG | + | chr1_1:3541839-3541858 | Msa0001820:CDS | 50.0% | |
| TCAGCCTCAAGAGCTAGGAA+GGG | + | chr1_1:3541803-3541822 | Msa0001820:CDS | 50.0% | |
| ! | TTTCCCCTTCCTAGCTCTTG+AGG | - | chr1_1:3542170-3542189 | None:intergenic | 50.0% |
| AAGAGCTAGGAAGGGGAAAG+AGG | + | chr1_1:3542171-3542190 | Msa0001820:CDS | 50.0% | |
| TTCTTTGTCCGGGGTGGTTC+GGG | - | chr1_1:3540266-3540285 | None:intergenic | 55.0% | |
| CTTCTTTGTCCGGGGTGGTT+CGG | - | chr1_1:3540267-3540286 | None:intergenic | 55.0% | |
| GCCTAGACTTACAAGGGAGC+AGG | + | chr1_1:3540691-3540710 | Msa0001820:CDS | 55.0% | |
| GGAGCAAGCTCTCATGGTTG+TGG | + | chr1_1:3541269-3541288 | Msa0001820:CDS | 55.0% | |
| AGGTTCGTGTTGGGCTGATG+AGG | - | chr1_1:3541432-3541451 | None:intergenic | 55.0% | |
| CCCAACACGAACCTGCATCA+TGG | + | chr1_1:3541438-3541457 | Msa0001820:CDS | 55.0% | |
| ACCGAGTGTGGACAACATCG+TGG | + | chr1_1:3541644-3541663 | Msa0001820:CDS | 55.0% | |
| TGGTCCTCAGGTTCAAGAGC+TGG | + | chr1_1:3541719-3541738 | Msa0001820:CDS | 55.0% | |
| GGTCCTCAGGTTCAAGAGCT+GGG | + | chr1_1:3541720-3541739 | Msa0001820:CDS | 55.0% | |
| CTTCCCAGCTCTTGAACCTG+AGG | - | chr1_1:3541726-3541745 | None:intergenic | 55.0% | |
| CTCAGGTTCAAGAGCTGGGA+AGG | + | chr1_1:3541724-3541743 | Msa0001820:CDS | 55.0% | |
| TCAAGAGCTAGGAAGGGTGG+TGG | + | chr1_1:3541767-3541786 | Msa0001820:CDS | 55.0% | |
| CTCAGCCTCAAGAGCTAGGA+AGG | + | chr1_1:3541802-3541821 | Msa0001820:CDS | 55.0% | |
| GCCTCAAGAGCTAGGAAGGA+TGG | + | chr1_1:3541806-3541825 | Msa0001820:CDS | 55.0% | |
| ! | GCCATCCTTCCTAGCTCTTG+AGG | - | chr1_1:3541810-3541829 | None:intergenic | 55.0% |
| GGCTCAAGAGCTAGGAAAGG+TGG | + | chr1_1:3541842-3541861 | Msa0001820:CDS | 55.0% | |
| TCAAGAGCTAGGAAGGGTGG+TGG | + | chr1_1:3541767-3541786 | Msa0001820:CDS | 55.0% | |
| AGCTCTTGAGGCTGAGCTTG+AGG | - | chr1_1:3541918-3541937 | None:intergenic | 55.0% | |
| CAAGCTCAGCCTCAAGAGCT+AGG | + | chr1_1:3541918-3541937 | Msa0001820:CDS | 55.0% | |
| GCCTCAAGAGCTAGGAATGG+TGG | + | chr1_1:3541926-3541945 | Msa0001820:CDS | 55.0% | |
| ! | AAGCTAAGAAGGGTGGTGGC+TGG | + | chr1_1:3541969-3541988 | Msa0001820:CDS | 55.0% |
| ! | CTTCCTAGCTCTTGAGCCTG+AGG | - | chr1_1:3541996-3542015 | None:intergenic | 55.0% |
| CTCAGGCTCAAGAGCTAGGA+AGG | + | chr1_1:3541838-3541857 | Msa0001820:CDS | 55.0% | |
| GCCTCAAAAGCTAGGAAGGG+GGG | + | chr1_1:3542082-3542101 | Msa0001820:CDS | 55.0% | |
| !! | ACCCCCCTTCCTAGCTTTTG+AGG | - | chr1_1:3542086-3542105 | None:intergenic | 55.0% |
| CTCAGGCTCAAGAGCTAGGA+AGG | + | chr1_1:3541838-3541857 | Msa0001820:CDS | 55.0% | |
| TCAAGAGCTAGGAAGGGTGG+TGG | + | chr1_1:3541767-3541786 | Msa0001820:CDS | 55.0% | |
| CTCAGCCTCAAGAGCTAGGA+AGG | + | chr1_1:3541802-3541821 | Msa0001820:CDS | 55.0% | |
| CAGCCTCAAGAGCTAGGAAG+GGG | + | chr1_1:3541804-3541823 | Msa0001820:CDS | 55.0% | |
| GAAGACGAAGAAGGAGCGGG+TGG | + | chr1_1:3540310-3540329 | Msa0001820:CDS | 60.0% | |
| CGAAGAAGGAGCGGGTGGTA+TGG | + | chr1_1:3540315-3540334 | Msa0001820:CDS | 60.0% | |
| ! | GCAAGTGGAGGTTGGTCCTC+AGG | + | chr1_1:3541707-3541726 | Msa0001820:CDS | 60.0% |
| GGTTCAAGAGCTGGGAAGGG+TGG | + | chr1_1:3541728-3541747 | Msa0001820:CDS | 60.0% | |
| TCAAGAGCTGGGAAGGGTGG+TGG | + | chr1_1:3541731-3541750 | Msa0001820:CDS | 60.0% | |
| ! | GAGCTAGGAAGGGTGGTGGT+TGG | + | chr1_1:3541771-3541790 | Msa0001820:CDS | 60.0% |
| ! | AAGGGTGGTGGTTGGTCCTC+AGG | + | chr1_1:3541779-3541798 | Msa0001820:CDS | 60.0% |
| AGCTCTTGAGGCTGAGCCTG+AGG | - | chr1_1:3541798-3541817 | None:intergenic | 60.0% | |
| CAGGCTCAGCCTCAAGAGCT+AGG | + | chr1_1:3541798-3541817 | Msa0001820:CDS | 60.0% | |
| GGTCCTCAGGCTCAAGAGCT+AGG | + | chr1_1:3541834-3541853 | Msa0001820:CDS | 60.0% | |
| ! | AAAGGTGGTGGCTGCTCGTC+AGG | + | chr1_1:3541857-3541876 | Msa0001820:CDS | 60.0% |
| !! | GAGCTAGGAATGGTGGTGGC+TGG | + | chr1_1:3541933-3541952 | Msa0001820:CDS | 60.0% |
| GGTCCTCAGGCTCAAGAGCT+AGG | + | chr1_1:3541834-3541853 | Msa0001820:CDS | 60.0% | |
| GGCTCAAGAGCTAGGAAGGG+TGG | + | chr1_1:3541998-3542017 | Msa0001820:CDS | 60.0% | |
| ! | AAGCTAGGAAGGGTGGTGGC+TGG | + | chr1_1:3542047-3542066 | Msa0001820:CDS | 60.0% |
| AAGCTAGGAAGGGGGGTGAC+TGG | + | chr1_1:3542089-3542108 | Msa0001820:CDS | 60.0% | |
| AGCTCTTGAGCCTGAGCCTG+AGG | - | chr1_1:3542116-3542135 | None:intergenic | 60.0% | |
| CAGGCTCAGGCTCAAGAGCT+AGG | + | chr1_1:3542116-3542135 | Msa0001820:CDS | 60.0% | |
| GGCTCAAGAGCTAGGAAGGG+TGG | + | chr1_1:3541998-3542017 | Msa0001820:CDS | 60.0% | |
| ! | AAGGGTGGTGGCTACTCCAC+AGG | + | chr1_1:3542139-3542158 | Msa0001820:CDS | 60.0% |
| AGCTCTTGAGGCTGAGCCTG+TGG | - | chr1_1:3541798-3541817 | None:intergenic | 60.0% | |
| CAGGCTCAGCCTCAAGAGCT+AGG | + | chr1_1:3541798-3541817 | Msa0001820:CDS | 60.0% | |
| ! | GAGCTAGGAAGGATGGCGGC+TGG | + | chr1_1:3541813-3541832 | Msa0001820:CDS | 65.0% |
| ! | AAGGATGGCGGCTGGTCCTC+AGG | + | chr1_1:3541821-3541840 | Msa0001820:CDS | 65.0% |
| ! | GAGCTAGGAAGGGTGGTGGC+TGG | + | chr1_1:3541891-3541910 | Msa0001820:CDS | 65.0% |
| ! | AAGGGTGGTGGCTGGTCCTC+AGG | + | chr1_1:3541743-3541762 | Msa0001820:CDS | 65.0% |
| ! | AAGGGGGGTGACTGGTCCTC+AGG | + | chr1_1:3542097-3542116 | Msa0001820:CDS | 65.0% |
| ! | GGTGACTGGTCCTCAGGCTC+AGG | + | chr1_1:3542103-3542122 | Msa0001820:CDS | 65.0% |
| ! | GAGCTGGGAAGGGTGGTGGC+TGG | + | chr1_1:3541735-3541754 | Msa0001820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3539538 | 3542226 | 3539538 | ID=Msa0001820;Name=Msa0001820 |
| chr1_1 | mRNA | 3539538 | 3542226 | 3539538 | ID=Msa0001820-mRNA-1;Parent=Msa0001820;Name=Msa0001820-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|0.75|0.8|5|0|591 |
| chr1_1 | exon | 3539538 | 3539652 | 3539538 | ID=Msa0001820-mRNA-1:exon:981;Parent=Msa0001820-mRNA-1 |
| chr1_1 | exon | 3539756 | 3539905 | 3539756 | ID=Msa0001820-mRNA-1:exon:982;Parent=Msa0001820-mRNA-1 |
| chr1_1 | exon | 3540006 | 3540398 | 3540006 | ID=Msa0001820-mRNA-1:exon:983;Parent=Msa0001820-mRNA-1 |
| chr1_1 | exon | 3540654 | 3540730 | 3540654 | ID=Msa0001820-mRNA-1:exon:984;Parent=Msa0001820-mRNA-1 |
| chr1_1 | exon | 3541186 | 3542226 | 3541186 | ID=Msa0001820-mRNA-1:exon:985;Parent=Msa0001820-mRNA-1 |
| chr1_1 | CDS | 3539538 | 3539652 | 3539538 | ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1 |
| chr1_1 | CDS | 3539756 | 3539905 | 3539756 | ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1 |
| chr1_1 | CDS | 3540006 | 3540398 | 3540006 | ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1 |
| chr1_1 | CDS | 3540654 | 3540730 | 3540654 | ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1 |
| chr1_1 | CDS | 3541186 | 3542226 | 3541186 | ID=Msa0001820-mRNA-1:cds;Parent=Msa0001820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
