AlfalfaGEDB | Msa0930750

M. sativa cultivar zhongmu-4 / Msa0930750

KEGG: K14491
GO: -
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930750	XP_024628307.2	66.781	292	41	5	410	645	522	813	2.39e-98	330
Msa0930750	XP_024628307.2	80.122	654	96	9	1	633	1	641	0.0	967

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930750	sp\|Q9FXD6\|ARR11_ARATH	38.462	260	140	5	10	259	8	257	2.11e-46	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0930750	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001820	Msa0930750	0.818657	1.748688e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930750	MtrunA17_Chr8g0391911	83.268	257	32	2	1	253	1	250	1.21e-131	387
Msa0930750	MtrunA17_Chr6g0456631	89.474	171	17	1	1	170	1	171	4.26e-105	315
Msa0930750	MtrunA17_Chr4g0009851	40.964	249	118	3	9	257	11	230	2.88e-57	196
Msa0930750	MtrunA17_Chr4g0009901	41.860	258	120	4	1	257	1	229	2.38e-55	189
Msa0930750	MtrunA17_Chr1g0161431	40.075	267	131	6	8	256	10	265	6.23e-51	186
Msa0930750	MtrunA17_Chr3g0123131	38.224	259	147	6	8	260	12	263	5.41e-47	174
Msa0930750	MtrunA17_Chr2g0294911	39.516	248	143	4	7	253	27	268	2.37e-45	170
Msa0930750	MtrunA17_Chr8g0376881	37.121	264	139	5	9	260	25	273	1.68e-44	167
Msa0930750	MtrunA17_Chr4g0067981	41.406	256	129	9	7	253	29	272	2.63e-44	168
Msa0930750	MtrunA17_Chr1g0149851	34.524	336	191	8	6	316	2	333	1.34e-43	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0930750	AT1G67710.1	38.462	260	140	5	10	259	8	257	2.14e-47	175
Msa0930750	AT2G01760.1	38.235	272	144	8	5	261	3	265	2.70e-45	166
Msa0930750	AT3G16857.1	36.397	272	136	8	9	253	33	294	1.33e-40	158
Msa0930750	AT3G16857.2	36.397	272	136	8	9	253	33	294	1.86e-40	157
Msa0930750	AT2G01760.2	34.667	300	144	9	5	261	3	293	2.01e-39	150
Msa0930750	AT2G25180.1	35.458	251	149	5	7	253	11	252	2.49e-39	153
Msa0930750	AT5G58080.1	33.432	338	203	8	7	330	12	341	1.41e-35	142
Msa0930750	AT1G67710.2	39.604	202	103	4	67	259	1	192	1.71e-35	140
Msa0930750	AT4G31920.1	34.848	264	121	7	7	253	11	240	2.16e-35	141
Msa0930750	AT3G16857.3	36.910	233	110	8	48	253	2	224	3.28e-32	132

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Find 189 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAGTAAAGTATATG+TGG	0.524588	6_2:-79827128	Msa0930750:CDS
AAAGGTGGTGGCTGCTCGTC+AGG	0.385388	6_2:-79825352	Msa0930750:CDS
AAATAAACATCAACAAGAAC+AGG	0.463567	6_2:-79825973	Msa0930750:CDS
AAATCAAATGAATCCATGTC+CGG	0.545425	6_2:+79827379	None:intergenic
AACAATTCTTGAACATATGA+AGG	0.483635	6_2:-79826552	Msa0930750:CDS
AACACAAGATATACTAATTG+AGG	0.466931	6_2:-79824805	None:intergenic
AACGATGTACCATCGGAAAA+AGG	0.331149	6_2:-79826994	Msa0930750:CDS
AAGAGCTAGGAAGGGGAAAG+AGG	0.511686	6_2:-79824840	Msa0930750:CDS
AAGATATACCCGAACCACCC+CGG	0.626205	6_2:-79826966	Msa0930750:CDS
AAGCTAAGAAGGGTGGTGGC+TGG	0.555418	6_2:-79825042	Msa0930750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATGCTATTGAGAAAACA+TGG	-	chr6_2:79824880-79824899	Msa0930750:CDS	30.0%
AAATCAAATGAATCCATGTC+CGG	+	chr6_2:79825114-79825133	None:intergenic	30.0%
ATCATTAAAGTGACATGTAG+CGG	-	chr6_2:79825769-79825788	Msa0930750:CDS	30.0%
TTCTGCTCGATTAAGTATTA+TGG	+	chr6_2:79826325-79826344	None:intergenic	30.0%
ACAAGAACTTTAACATTGGC+TGG	+	chr6_2:79824837-79824856	None:intergenic	35.0%
TGGTCTCAATTCAATTACCA+AGG	-	chr6_2:79824900-79824919	Msa0930750:CDS	35.0%
GCTGTTAGGAAAATGATGAA+AGG	-	chr6_2:79825391-79825410	Msa0930750:CDS	35.0%
AATCATCTCTTGCCCTTATT+TGG	+	chr6_2:79825462-79825481	None:intergenic	35.0%
TCTTCTTTGTCTTCTTTGTC+CGG	+	chr6_2:79825546-79825565	None:intergenic	35.0%
AATAGGTAAAGAATGCGTAC+TGG	+	chr6_2:79825668-79825687	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	79824807	79827705	79824807	ID=Msa0930750;Name=Msa0930750
chr6_2	mRNA	79824807	79827705	79824807	ID=Msa0930750-mRNA-1;Parent=Msa0930750;Name=Msa0930750-mRNA-1;_AED=0.03;_eAED=0.06;_QI=0\|0\|0\|0.8\|1\|1\|5\|0\|646
chr6_2	exon	79827591	79827705	79827591	ID=Msa0930750-mRNA-1:exon:13867;Parent=Msa0930750-mRNA-1
chr6_2	exon	79827338	79827487	79827338	ID=Msa0930750-mRNA-1:exon:13866;Parent=Msa0930750-mRNA-1
chr6_2	exon	79826845	79827237	79826845	ID=Msa0930750-mRNA-1:exon:13865;Parent=Msa0930750-mRNA-1
chr6_2	exon	79826511	79826587	79826511	ID=Msa0930750-mRNA-1:exon:13864;Parent=Msa0930750-mRNA-1
chr6_2	exon	79824807	79826012	79824807	ID=Msa0930750-mRNA-1:exon:13863;Parent=Msa0930750-mRNA-1
chr6_2	CDS	79827591	79827705	79827591	ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2	CDS	79827338	79827487	79827338	ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2	CDS	79826845	79827237	79826845	ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2	CDS	79826511	79826587	79826511	ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2	CDS	79824807	79826012	79824807	ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1

Gene Sequence

>Msa0930750

ATGGATTTTTCCTTTGGGAATGAGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATCGATCTTCTCAATGCTATTGAGAAAACATGGTCTCAATTCAATTACCAAGTTACTACATGTTCGACAGTTTCTTCAGCCTTGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAGCTGAAATGCCGGACATGGATTCATTTGATTTCTTGCAAAAAATTACACAACAAGTCGATATTCCTGTCATTATGACGATGTGTTCTGAAGGATCAACAAATGGAATAATGAAGGCAATTGAAAATGGAGCTTGTGACTGTTTTGTCAAGCCATTCACTGAAAATCAAGTAAAGTATATGTGGCATCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGATTGAGGGTAGCCAAATAAGGGCAAGAGATGATTCAAATTTACGCTTAAACGATGTACCATCGGAAAAAGGTGACGAAGATATACCCGAACCACCCCGGACAAAGAAGACAAAGAAGAGAAAGAAGACGAAGAAGACGAAGAAGGAGCGGGTGGTATGGTCTTTAGAATTACATGAGAAATTCATGAATGCTGTTAAAGAACTTGATGCTTCCACTTCCAAGGCGGTACCAAAAACAATTCTTGAACATATGAAGGTGCCTAGACTTACAAGGGAGCAGGTAGCTAGTCATCTTCAGAAGTATAGACTGTATTTAAATAAACATCAACAAGAACAGGAGCAAGCTCTCATGGTTGTGGAATCCAACAGTTCACATGCTGCTGCTCATGCTGCTGTATTGAAATCATCACAGTGGTCTCACAATTCTCATGTTGCAGAACAACAATATCCAATGGCATATGGTTGCAGTTCTCAACAAGTTCCCAGAAAATTGATACCAAGGCATTTTCCTCATCAGCCCAACACGAACCTGCATCATGGATATGCAACATGGGAGCAGCAATTTCCAAGTGAATATTATATAACTGATCATGATCATGCAGTTGGTCTTGGAAACTTGATGGCGAATAATAGTAATGCATTGCCTCAGCAACAAGAACATCATAATCCACAACAATCACCAATGCATGTTCCTCAGATGAATAATGCAGTCAATGATGTTGTACCGAGTGTGGACAACATCGTGGAAGTGAATAATACTGTAACAGATTTCGGTGAAGCTACAATGCAAGTGGAGGTTGGTCCTCAGGTTCAAGAGCTGGGAAGGGTGGTGGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGGTTGGTCCTCAGGCTCAGCCTCAAGAGCTAGGAAGGATGGCGGCTGGTCCTCAGGCTCAAGAGCTAGGAAAGGTGGTGGCTGCTCGTCAGGCTCAACATCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAAGGGTGGTGACTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTGCTCCACATGCTCAACCTCAAGAGCTAGGAAGGGTGGTTGCTGCTCCACAGGCTCAACCTCAAAAGCTAGGAAGGGTGGTGGCTTGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAATGGTGGTGGCTGGTTCTCAGACTCGAAAGCTAAGAAGGGTGGTGGCTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGCTGCTGCTCCACATGCTCAACCTAAAAAGCTAGGAAGGGTGGTGGCTGGTCCCCAAGCTCAGCCTCAAAAGCTAGGAAGGGGGGTGACTGGTCCTCAGGCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTACTCCACAGGCTCAGCCTCAAGAGCTAGGAAGGGGAAAGAGGTATAAGAAGCCTAACACAAGATATACTAATTGA

Protein sequence

>Msa0930750

MDFSFGNEFPANVKVLVIDHDIDLLNAIEKTWSQFNYQVTTCSTVSSALNLIAQKVHFDLVLLEAEMPDMDSFDFLQKITQQVDIPVIMTMCSEGSTNGIMKAIENGACDCFVKPFTENQVKYMWHHAVRKMMKGNKKQKINEQLGIEGSQIRARDDSNLRLNDVPSEKGDEDIPEPPRTKKTKKRKKTKKTKKERVVWSLELHEKFMNAVKELDASTSKAVPKTILEHMKVPRLTREQVASHLQKYRLYLNKHQQEQEQALMVVESNSSHAAAHAAVLKSSQWSHNSHVAEQQYPMAYGCSSQQVPRKLIPRHFPHQPNTNLHHGYATWEQQFPSEYYITDHDHAVGLGNLMANNSNALPQQQEHHNPQQSPMHVPQMNNAVNDVVPSVDNIVEVNNTVTDFGEATMQVEVGPQVQELGRVVAGPQDQELGRVVVGPQAQPQELGRMAAGPQAQELGKVVAARQAQHQELGRVVAGPQAQPQELGRVVTGPQAQELGRVVAAPHAQPQELGRVVAAPQAQPQKLGRVVACPQAQELGRVVAGPQAQPQELGMVVAGSQTRKLRRVVAGPQAQELGRVAAAPHAQPKKLGRVVAGPQAQPQKLGRGVTGPQAQAQELGRVVATPQAQPQELGRGKRYKKPNTRYTN*