AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930750 MtrunA17_Chr8g0391911 83.268 257 32 2 1 253 1 250 1.21e-131 387
Msa0930750 MtrunA17_Chr6g0456631 89.474 171 17 1 1 170 1 171 4.26e-105 315
Msa0930750 MtrunA17_Chr4g0009851 40.964 249 118 3 9 257 11 230 2.88e-57 196
Msa0930750 MtrunA17_Chr4g0009901 41.860 258 120 4 1 257 1 229 2.38e-55 189
Msa0930750 MtrunA17_Chr1g0161431 40.075 267 131 6 8 256 10 265 6.23e-51 186
Msa0930750 MtrunA17_Chr3g0123131 38.224 259 147 6 8 260 12 263 5.41e-47 174
Msa0930750 MtrunA17_Chr2g0294911 39.516 248 143 4 7 253 27 268 2.37e-45 170
Msa0930750 MtrunA17_Chr8g0376881 37.121 264 139 5 9 260 25 273 1.68e-44 167
Msa0930750 MtrunA17_Chr4g0067981 41.406 256 129 9 7 253 29 272 2.63e-44 168
Msa0930750 MtrunA17_Chr1g0149851 34.524 336 191 8 6 316 2 333 1.34e-43 164
Msa0930750 MtrunA17_Chr3g0137101 38.148 270 126 7 6 253 5 255 8.50e-43 164
Msa0930750 MtrunA17_Chr6g0471041 38.750 240 114 6 14 251 19 227 9.19e-42 156
Msa0930750 MtrunA17_Chr1g0149841 34.069 317 192 7 7 310 3 315 1.85e-41 157
Msa0930750 MtrunA17_Chr7g0275891 33.439 314 178 8 6 296 2 307 5.72e-41 152
Msa0930750 MtrunA17_Chr8g0383961 52.593 135 62 2 4 137 9 142 3.17e-40 148
Msa0930750 MtrunA17_Chr2g0304841 35.271 258 153 6 7 253 16 270 2.93e-36 145
Msa0930750 MtrunA17_Chr4g0074401 33.582 268 139 6 5 253 13 260 6.98e-35 140
Msa0930750 MtrunA17_Chr4g0074411 33.716 261 137 6 9 253 18 258 1.25e-34 139
Msa0930750 MtrunA17_Chr4g0009981 36.893 206 101 3 52 257 1 177 3.68e-34 130
Msa0930750 MtrunA17_Chr7g0275401 32.042 284 163 7 5 272 1 270 1.58e-33 130
Msa0930750 MtrunA17_Chr1g0149831 37.313 201 93 6 67 253 1 182 4.59e-28 112
Msa0930750 MtrunA17_Chr4g0074421 34.715 193 119 4 58 250 2 187 2.62e-26 106
Msa0930750 MtrunA17_Chr3g0134461 33.603 247 107 7 1 245 1 192 2.33e-25 103
Msa0930750 MtrunA17_Chr4g0011071 34.161 161 79 2 54 214 35 168 6.76e-25 102
Msa0930750 MtrunA17_Chr4g0010001 48.750 80 41 0 9 88 10 89 4.94e-22 90.9
Msa0930750 MtrunA17_Chr5g0423031 50.000 80 40 0 9 88 10 89 9.15e-20 87.4
Msa0930750 MtrunA17_Chr3g0134481 36.220 127 79 2 5 130 4 129 1.76e-19 87.0
Msa0930750 MtrunA17_Chr8g0350761 27.113 284 154 7 11 260 19 283 2.18e-18 88.6
Msa0930750 MtrunA17_Chr4g0009991 35.862 145 64 3 101 245 1 116 1.02e-15 73.9
Msa0930750 MtrunA17_Chr6g0473731 30.058 173 91 4 89 257 10 156 9.95e-15 77.0
Msa0930750 MtrunA17_Chr7g0255711 48.684 76 37 1 180 255 77 150 5.72e-14 73.2
Msa0930750 MtrunA17_Chr4g0031961 44.211 95 47 2 187 281 124 212 2.33e-13 71.6
Msa0930750 MtrunA17_Chr5g0422621 36.036 111 64 2 143 253 153 256 3.24e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930750 AT1G67710.1 38.462 260 140 5 10 259 8 257 2.14e-47 175
Msa0930750 AT2G01760.1 38.235 272 144 8 5 261 3 265 2.70e-45 166
Msa0930750 AT3G16857.1 36.397 272 136 8 9 253 33 294 1.33e-40 158
Msa0930750 AT3G16857.2 36.397 272 136 8 9 253 33 294 1.86e-40 157
Msa0930750 AT2G01760.2 34.667 300 144 9 5 261 3 293 2.01e-39 150
Msa0930750 AT2G25180.1 35.458 251 149 5 7 253 11 252 2.49e-39 153
Msa0930750 AT5G58080.1 33.432 338 203 8 7 330 12 341 1.41e-35 142
Msa0930750 AT1G67710.2 39.604 202 103 4 67 259 1 192 1.71e-35 140
Msa0930750 AT4G31920.1 34.848 264 121 7 7 253 11 240 2.16e-35 141
Msa0930750 AT3G16857.3 36.910 233 110 8 48 253 2 224 3.28e-32 132
Msa0930750 AT5G49240.1 33.984 256 151 7 5 252 34 279 2.89e-31 124
Msa0930750 AT1G49190.1 30.363 303 189 8 4 297 25 314 8.65e-31 125
Msa0930750 AT2G01760.3 37.799 209 107 6 67 261 1 200 9.69e-31 123
Msa0930750 AT3G62670.1 34.855 241 137 8 14 248 42 268 8.86e-29 119
Msa0930750 AT1G67710.3 37.363 182 96 3 87 259 11 183 8.19e-28 117
Msa0930750 AT5G07210.2 24.815 270 168 6 13 253 16 279 3.71e-17 85.9
Msa0930750 AT1G49190.2 33.588 131 85 2 4 133 25 154 6.84e-17 85.1
Msa0930750 AT1G68210.1 29.412 272 156 9 8 248 8 274 1.78e-16 84.0
Msa0930750 AT5G07210.1 24.101 278 168 7 13 253 16 287 8.24e-15 78.2
Msa0930750 AT3G10760.1 53.030 66 29 1 190 255 101 164 1.12e-13 73.2
Msa0930750 AT5G59570.2 53.030 66 29 1 190 255 137 200 1.52e-13 72.4
Msa0930750 AT5G59570.1 53.030 66 29 1 190 255 137 200 1.52e-13 72.4
Msa0930750 AT5G05090.1 47.619 84 31 2 170 253 68 138 2.46e-13 71.2
Msa0930750 AT2G40970.1 53.030 66 29 1 190 255 101 164 3.23e-13 70.5
Msa0930750 AT3G46640.2 53.030 66 29 1 190 255 140 203 3.42e-13 71.6
Msa0930750 AT3G46640.1 53.030 66 29 1 190 255 140 203 3.42e-13 71.6
Msa0930750 AT3G46640.3 53.030 66 29 1 190 255 140 203 4.98e-13 71.2

Find 189 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATCTCTTGCCCTTATT+TGG 0.189913 6_2:+79827031 None:intergenic
TTCTTTGTCCGGGGTGGTTC+GGG 0.278029 6_2:+79826958 None:intergenic
CTTCTTTGTCCGGGGTGGTT+CGG 0.314627 6_2:+79826957 None:intergenic
GGATTGAGGGTAGCCAAATA+AGG 0.317246 6_2:-79827044 Msa0930750:CDS
GGTGACTGGTCCTCAGGCTC+AGG 0.325098 6_2:-79824908 Msa0930750:CDS
AACGATGTACCATCGGAAAA+AGG 0.331149 6_2:-79826994 Msa0930750:CDS
AATAATACTGTAACAGATTT+CGG 0.331250 6_2:-79825537 Msa0930750:CDS
TCTTCTTTGTCTTCTTTGTC+CGG 0.340590 6_2:+79826947 None:intergenic
CAATTAGTATATCTTGTGTT+AGG 0.345112 6_2:+79824808 None:intergenic
ATAATGAAGGCAATTGAAAA+TGG 0.347793 6_2:-79827183 Msa0930750:CDS
AAGGGTGGTGGTTGGTCCTC+AGG 0.351815 6_2:-79825430 Msa0930750:CDS
AAGGGTGGTGGCTGGTCCTC+AGG 0.380509 6_2:-79825034 Msa0930750:CDS
AAAGGTGGTGGCTGCTCGTC+AGG 0.385388 6_2:-79825352 Msa0930750:CDS
CTTCTTTGTCTTCTTTGTCC+GGG 0.397717 6_2:+79826948 None:intergenic
GCAGGTAGCTAGTCATCTTC+AGG 0.404754 6_2:-79826510 Msa0930750:intron
CTTGAATTTGATAGCACAAA+AGG 0.421977 6_2:-79827437 Msa0930750:CDS
CTCAGCCTCAAGAGCTAGGA+AGG 0.422711 6_2:-79825287 Msa0930750:CDS
CATGATCATGCAGTTGGTCT+TGG 0.425207 6_2:-79825699 Msa0930750:CDS
GAGCTGGGAAGGGTGGTGGC+TGG 0.425258 6_2:-79825474 Msa0930750:CDS
AAGGATGGCGGCTGGTCCTC+AGG 0.425842 6_2:-79825388 Msa0930750:CDS
GCAAGTGGAGGTTGGTCCTC+AGG 0.426953 6_2:-79825502 Msa0930750:CDS
ACAAGAACTTTAACATTGGC+TGG 0.429953 6_2:+79827656 None:intergenic
AAGGGTGGTGGCTTGTCCTC+AGG 0.433345 6_2:-79825148 Msa0930750:CDS
CTCAGCCTCAAGAGCTAGGA+AGG 0.439395 6_2:-79824849 Msa0930750:CDS
AAGGGTGGTGACTGGTCCTC+AGG 0.440118 6_2:-79825268 Msa0930750:CDS
ATATGTGGCATCATGCTGTT+AGG 0.443627 6_2:-79827113 Msa0930750:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.446172 6_2:-79824891 Msa0930750:CDS
AAGGGTGGTTGCTGCTCCAC+AGG 0.447691 6_2:-79825190 Msa0930750:CDS
CTCAGACTCGAAAGCTAAGA+AGG 0.449485 6_2:-79825053 Msa0930750:CDS
CAACAATATCCAATGGCATA+TGG 0.455357 6_2:-79825849 Msa0930750:CDS
AAATAAACATCAACAAGAAC+AGG 0.463567 6_2:-79825973 Msa0930750:CDS
AACACAAGATATACTAATTG+AGG 0.466931 6_2:-79824805 None:intergenic
CTCAGCCTCAAGAGCTAGGA+AGG 0.474289 6_2:-79825407 Msa0930750:CDS
TCAAGAGCTGGGAAGGGTGG+TGG 0.474375 6_2:-79825478 Msa0930750:CDS
CTCAGGTTCAAGAGCTGGGA+AGG 0.474845 6_2:-79825485 Msa0930750:CDS
CTCAGCCTCAAAAGCTAGGA+AGG 0.475835 6_2:-79824933 Msa0930750:CDS
CTCAACCTCAAAAGCTAGGA+AGG 0.475887 6_2:-79825167 Msa0930750:CDS
CTCAACATCAAGAGCTAGGA+AGG 0.478408 6_2:-79825329 Msa0930750:CDS
CTCAAGATCAAGAGCTAGGA+AGG 0.478408 6_2:-79825449 Msa0930750:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 6_2:-79825017 Msa0930750:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 6_2:-79825131 Msa0930750:CDS
CTCAACCTCAAGAGCTAGGA+AGG 0.478532 6_2:-79825209 Msa0930750:CDS
CTCAGGCTCAAGAGCTAGGA+AGG 0.478532 6_2:-79825251 Msa0930750:CDS
GATTGAGGGTAGCCAAATAA+GGG 0.479725 6_2:-79827043 Msa0930750:CDS
TAAAGAATGCGTACTGGAAG+TGG 0.480432 6_2:+79826831 None:intergenic
AACAATTCTTGAACATATGA+AGG 0.483635 6_2:-79826552 Msa0930750:CDS
TATATTTACTTACTAATGAC+AGG 0.483959 6_2:+79827325 None:intergenic
TGGTCCTCAGGTTCAAGAGC+TGG 0.485261 6_2:-79825490 Msa0930750:CDS
AATGAGCAATTGGGGATTGA+GGG 0.485917 6_2:-79827057 Msa0930750:CDS
CAATGAGCAATTGGGGATTG+AGG 0.491122 6_2:-79827058 Msa0930750:CDS
CCATGATGCAGGTTCGTGTT+GGG 0.494378 6_2:+79825771 None:intergenic
TGTTCTGAAGGATCAACAAA+TGG 0.496320 6_2:-79827207 Msa0930750:CDS
TTTCCCCTTCCTAGCTCTTG+AGG 0.499640 6_2:+79824844 None:intergenic
AGCTCTTGAGGCTGAGCTTG+AGG 0.500477 6_2:+79825096 None:intergenic
AGCTCTTGAGGCTGAGCTTG+AGG 0.500477 6_2:+79825294 None:intergenic
AAGGGTGGTGGCTACTCCAC+AGG 0.505062 6_2:-79824872 Msa0930750:CDS
TCCATGATGCAGGTTCGTGT+TGG 0.506466 6_2:+79825770 None:intergenic
ATCAACAAATGGAATAATGA+AGG 0.507137 6_2:-79827196 Msa0930750:CDS
CTTCCTAGCTCTTGATCTTG+AGG 0.508572 6_2:+79825450 None:intergenic
CGAAGAAGGAGCGGGTGGTA+TGG 0.509910 6_2:-79826906 Msa0930750:CDS
TGAAGCTGAAATGCCGGACA+TGG 0.511513 6_2:-79827392 Msa0930750:CDS
AAGAGCTAGGAAGGGGAAAG+AGG 0.511686 6_2:-79824840 Msa0930750:CDS
GAGCTAGGAATGGTGGTGGC+TGG 0.512918 6_2:-79825078 Msa0930750:CDS
TTCATCTGAGGAACATGCAT+TGG 0.513254 6_2:+79825609 None:intergenic
GGAGCAAGCTCTCATGGTTG+TGG 0.514199 6_2:-79825952 Msa0930750:CDS
GAAGAAGACGAAGAAGGAGC+GGG 0.515637 6_2:-79826914 Msa0930750:CDS
GCCTAGACTTACAAGGGAGC+AGG 0.518181 6_2:-79826528 Msa0930750:CDS
CAAGCTCAGCCTCAAGAGCT+AGG 0.520411 6_2:-79825291 Msa0930750:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 6_2:-79825021 Msa0930750:CDS
TGTCCTCAGGCTCAAGAGCT+AGG 0.520740 6_2:-79825135 Msa0930750:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 6_2:-79825255 Msa0930750:CDS
GGTCCTCAGGCTCAAGAGCT+AGG 0.520740 6_2:-79825375 Msa0930750:CDS
CAAGCTCAGCCTCAAAAGCT+AGG 0.520799 6_2:-79824937 Msa0930750:CDS
AGCTCTTGAGGCTGAGCCTG+TGG 0.521609 6_2:+79824856 None:intergenic
AGCTCTTGAGGTTGAGCATG+TGG 0.521665 6_2:+79825216 None:intergenic
CAGGCTCAGGCTCAAGAGCT+AGG 0.522151 6_2:-79824895 Msa0930750:CDS
CAAGCTCAGCCTCAAGAGCT+AGG 0.524513 6_2:-79825093 Msa0930750:CDS
AAAATCAAGTAAAGTATATG+TGG 0.524588 6_2:-79827128 Msa0930750:CDS
AGTTGGTCTTGGAAACTTGA+TGG 0.528215 6_2:-79825688 Msa0930750:CDS
AATCACAAGAACTTTAACAT+TGG 0.529369 6_2:+79827652 None:intergenic
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 6_2:-79824853 Msa0930750:CDS
CAGGCTCAGCCTCAAGAGCT+AGG 0.529994 6_2:-79825411 Msa0930750:CDS
AGCAGCAGCATGTGAACTGT+TGG 0.530394 6_2:+79825926 None:intergenic
AGAACAGGAGCAAGCTCTCA+TGG 0.536290 6_2:-79825958 Msa0930750:CDS
GAGCTAGGAAGGGTGGTGAC+TGG 0.538059 6_2:-79825276 Msa0930750:CDS
GCCTCAAGAGCTAGGAAGGA+TGG 0.540507 6_2:-79825403 Msa0930750:CDS
TCCACGATGTTGTCCACACT+CGG 0.540582 6_2:+79825564 None:intergenic
GAGCTAGGAAGGGTGGTGGC+TGG 0.541935 6_2:-79825120 Msa0930750:CDS
GAGCTAGGAAGGGTGGTGGC+TGG 0.541935 6_2:-79825318 Msa0930750:CDS
ACACAAGATATACTAATTGA+GGG 0.543203 6_2:-79824804 None:intergenic
GGTCCTCAGGTTCAAGAGCT+GGG 0.544277 6_2:-79825489 Msa0930750:CDS
TTCTTTGTCTTCTTTGTCCG+GGG 0.544906 6_2:+79826949 None:intergenic
AAATCAAATGAATCCATGTC+CGG 0.545425 6_2:+79827379 None:intergenic
GAAGACGAAGAAGACGAAGA+AGG 0.546374 6_2:-79826920 Msa0930750:CDS
AGCTCTTGAGCCTGAGCCTG+AGG 0.546926 6_2:+79824898 None:intergenic
AGCTCTTGAGGCTGAGCCTG+AGG 0.546926 6_2:+79825414 None:intergenic
ACATGCATTGGTGATTGTTG+TGG 0.548414 6_2:+79825621 None:intergenic
ACTGATCATGATCATGCAGT+TGG 0.548759 6_2:-79825705 Msa0930750:CDS
GGTTCAAGAGCTGGGAAGGG+TGG 0.548919 6_2:-79825481 Msa0930750:CDS
CCCAACACGAACCTGCATCA+TGG 0.549931 6_2:-79825771 Msa0930750:CDS
AAGCTAAGAAGGGTGGTGGC+TGG 0.555418 6_2:-79825042 Msa0930750:CDS
ATGTTGCATATCCATGATGC+AGG 0.557330 6_2:+79825760 None:intergenic
CAGGCTCAACATCAAGAGCT+AGG 0.558850 6_2:-79825333 Msa0930750:CDS
CAGGCTCAACCTCAAAAGCT+AGG 0.561577 6_2:-79825171 Msa0930750:CDS
TTTGTCTTCTTTGTCCGGGG+TGG 0.562381 6_2:+79826952 None:intergenic
CAGCCTCAAAAGCTAGGAAG+GGG 0.562802 6_2:-79824931 Msa0930750:CDS
CATGCTCAACCTCAAGAGCT+AGG 0.564867 6_2:-79825213 Msa0930750:CDS
AAGCTAGGAAGGGTGGTGGC+TGG 0.568049 6_2:-79824964 Msa0930750:CDS
GGCTGATGAGGAAAATGCCT+TGG 0.570075 6_2:+79825792 None:intergenic
TTTCCTAGCTCTTGAGCCTG+AGG 0.573303 6_2:+79825372 None:intergenic
GAGCTAGGAAGGATGGCGGC+TGG 0.575246 6_2:-79825396 Msa0930750:CDS
TGAAGGTGCCTAGACTTACA+AGG 0.576956 6_2:-79826535 Msa0930750:CDS
ACCTGCTCCCTTGTAAGTCT+AGG 0.577890 6_2:+79826527 None:intergenic
GGCTCAAGAGCTAGGAAGGG+TGG 0.577942 6_2:-79825013 Msa0930750:CDS
TGCATCATGGATATGCAACA+TGG 0.578384 6_2:-79825758 Msa0930750:CDS
ACCACCCTTCCTAGCTCTTG+AGG 0.578654 6_2:+79825204 None:intergenic
GGCTCAAGAGCTAGGAAAGG+TGG 0.579566 6_2:-79825367 Msa0930750:CDS
GCCTCAAGAGCTAGGAATGG+TGG 0.580235 6_2:-79825085 Msa0930750:CDS
CAGCCTCAAGAGCTAGGAAG+GGG 0.581740 6_2:-79824847 Msa0930750:CDS
GGTCCTCAAGATCAAGAGCT+AGG 0.581757 6_2:-79825453 Msa0930750:CDS
TTCCCAGAAAATTGATACCA+AGG 0.582328 6_2:-79825809 Msa0930750:CDS
ACCACCCTTCCTAGCTCTTG+AGG 0.582587 6_2:+79825282 None:intergenic
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 6_2:-79824887 Msa0930750:CDS
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 6_2:-79825127 Msa0930750:CDS
GGCTCAAGAGCTAGGAAGGG+TGG 0.582674 6_2:-79825247 Msa0930750:CDS
GCCTCAAGAGCTAGGAAGGG+TGG 0.582674 6_2:-79825283 Msa0930750:CDS
CTTCCTAGCTCTTGAGCCTG+AGG 0.585618 6_2:+79825018 None:intergenic
CTTCCTAGCTCTTGAGCCTG+AGG 0.585618 6_2:+79825252 None:intergenic
ACTACTTGAAGCTGAAATGC+CGG 0.587583 6_2:-79827398 Msa0930750:CDS
GAGCTAGGAAGGGTGGTGGT+TGG 0.591794 6_2:-79825438 Msa0930750:CDS
TCAAAAGCTAGGAAGGGTGG+TGG 0.595324 6_2:-79825160 Msa0930750:CDS
TTATGATGTTCTTGTTGCTG+AGG 0.596660 6_2:+79825645 None:intergenic
TGGTCTCAATTCAATTACCA+AGG 0.596923 6_2:-79827590 Msa0930750:intron
GCCTCAAAAGCTAGGAAGGG+GGG 0.598080 6_2:-79824929 Msa0930750:CDS
GCTGTTAGGAAAATGATGAA+AGG 0.599623 6_2:-79827099 Msa0930750:CDS
ACGCTTAAACGATGTACCAT+CGG 0.602369 6_2:-79827001 Msa0930750:CDS
GAACTGCAACCATATGCCAT+TGG 0.602482 6_2:+79825840 None:intergenic
TCAGCCTCAAAAGCTAGGAA+GGG 0.606989 6_2:-79824932 Msa0930750:CDS
GCTACAATGCAAGTGGAGGT+TGG 0.607441 6_2:-79825510 Msa0930750:CDS
GCCATCCTTCCTAGCTCTTG+AGG 0.607945 6_2:+79825402 None:intergenic
CGAAGAAGACGAAGAAGGAG+CGG 0.608903 6_2:-79826915 Msa0930750:CDS
TCGAAAGCTAAGAAGGGTGG+TGG 0.609238 6_2:-79825046 Msa0930750:CDS
ACCTCAAAAGCTAGGAAGGG+TGG 0.610885 6_2:-79825163 Msa0930750:CDS
CGGTGAAGCTACAATGCAAG+TGG 0.610968 6_2:-79825517 Msa0930750:CDS
CTTCCCAGCTCTTGAACCTG+AGG 0.611183 6_2:+79825486 None:intergenic
TTGACTGCATTATTCATCTG+AGG 0.611554 6_2:+79825597 None:intergenic
TCAAGAGCTAGGAAGGGTGG+TGG 0.612518 6_2:-79825322 Msa0930750:CDS
TCAGTTATATAATATTCACT+TGG 0.614757 6_2:+79825723 None:intergenic
GACTCGAAAGCTAAGAAGGG+TGG 0.616097 6_2:-79825049 Msa0930750:CDS
ACCACCATTCCTAGCTCTTG+AGG 0.617365 6_2:+79825084 None:intergenic
ACCTCAAGAGCTAGGAAGGG+TGG 0.617706 6_2:-79825205 Msa0930750:CDS
TCAGCCTCAAGAGCTAGGAA+GGG 0.618998 6_2:-79824848 Msa0930750:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.619733 6_2:-79825442 Msa0930750:CDS
CTTCCTAGCTCTTGAGCCTG+AGG 0.620806 6_2:+79825132 None:intergenic
TCAGGCTCAAGAGCTAGGAA+GGG 0.624572 6_2:-79824890 Msa0930750:CDS
AAGATATACCCGAACCACCC+CGG 0.626205 6_2:-79826966 Msa0930750:CDS
TGCAGAACAACAATATCCAA+TGG 0.629974 6_2:-79825856 Msa0930750:CDS
GGCTGGAAACTCATTCCCAA+AGG 0.633277 6_2:+79827673 None:intergenic
CAATGATGTTGTACCGAGTG+TGG 0.635078 6_2:-79825577 Msa0930750:CDS
TCAGGTTCAAGAGCTGGGAA+GGG 0.636064 6_2:-79825484 Msa0930750:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.636286 6_2:-79825124 Msa0930750:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.636286 6_2:-79825244 Msa0930750:CDS
TCAAGAGCTAGGAATGGTGG+TGG 0.637451 6_2:-79825082 Msa0930750:CDS
TCAAGAGCTAGGAAAGGTGG+TGG 0.637451 6_2:-79825364 Msa0930750:CDS
TCAACCTCAAAAGCTAGGAA+GGG 0.637506 6_2:-79825166 Msa0930750:CDS
TCAAGAGCTAGGAAGGGTGG+TGG 0.638725 6_2:-79824884 Msa0930750:CDS
TCAGACTCGAAAGCTAAGAA+GGG 0.638931 6_2:-79825052 Msa0930750:CDS
AGCCTCAAAAGCTAGGAAGG+GGG 0.642823 6_2:-79824930 Msa0930750:CDS
TCAGCCTCAAGAGCTAGGAA+TGG 0.643593 6_2:-79825088 Msa0930750:CDS
TCAATGCTATTGAGAAAACA+TGG 0.646799 6_2:-79827610 Msa0930750:CDS
ACATCAAGAGCTAGGAAGGG+TGG 0.650678 6_2:-79825325 Msa0930750:CDS
AGATCAAGAGCTAGGAAGGG+TGG 0.650678 6_2:-79825445 Msa0930750:CDS
TCAGCCTCAAGAGCTAGGAA+GGG 0.652611 6_2:-79825286 Msa0930750:CDS
AGGTTCGTGTTGGGCTGATG+AGG 0.653657 6_2:+79825780 None:intergenic
TCAGGCTCAAGAGCTAGGAA+AGG 0.654595 6_2:-79825370 Msa0930750:CDS
GAAGACGAAGAAGGAGCGGG+TGG 0.656592 6_2:-79826911 Msa0930750:CDS
GCATCATGGATATGCAACAT+GGG 0.656904 6_2:-79825757 Msa0930750:CDS
GAAGGTGCCTAGACTTACAA+GGG 0.661563 6_2:-79826534 Msa0930750:CDS
TGAAGCTACAATGCAAGTGG+AGG 0.663678 6_2:-79825514 Msa0930750:CDS
ACCGAGTGTGGACAACATCG+TGG 0.681310 6_2:-79825565 Msa0930750:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 6_2:-79825016 Msa0930750:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 6_2:-79825130 Msa0930750:CDS
TCAGGCTCAAGAGCTAGGAA+GGG 0.685952 6_2:-79825250 Msa0930750:CDS
GCAGTGACGATGTGTTCTGA+AGG 0.690924 6_2:-79827219 Msa0930750:intron
TCAACATCAAGAGCTAGGAA+GGG 0.691703 6_2:-79825328 Msa0930750:CDS
TCAACCTCAAGAGCTAGGAA+GGG 0.693140 6_2:-79825208 Msa0930750:CDS
TCAAGATCAAGAGCTAGGAA+GGG 0.696103 6_2:-79825448 Msa0930750:CDS
CTGTATTGAAATCATCACAG+TGG 0.740386 6_2:-79825896 Msa0930750:CDS
TCAAGAGCTAGGAAGGATGG+CGG 0.754981 6_2:-79825400 Msa0930750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAATTTGATTATTTA+TGG - chr6_2:79826087-79826106 Msa0930750:intron 10.0%
!!! ACATATTATTAATCTTTTAT+AGG - chr6_2:79826155-79826174 Msa0930750:intron 10.0%
!! ATATATTAATTTACAAACCT+TGG + chr6_2:79824920-79824939 None:intergenic 15.0%
!! AAGGTTTGTAAATTAATATA+TGG - chr6_2:79824919-79824938 Msa0930750:CDS 15.0%
!! AAAGTTTAAATTTCAAAGAA+CGG + chr6_2:79826022-79826041 None:intergenic 15.0%
!! TGTCAAAAATGAATAAATAA+AGG - chr6_2:79826050-79826069 Msa0930750:intron 15.0%
!! AAATTTGATTATTTATGGTT+TGG - chr6_2:79826092-79826111 Msa0930750:intron 15.0%
!! ATTCAATAAACAATCAAAGA+AGG + chr6_2:79824947-79824966 None:intergenic 20.0%
!! TATATTTACTTACTAATGAC+AGG + chr6_2:79825168-79825187 None:intergenic 20.0%
!! AAAATCAAGTAAAGTATATG+TGG - chr6_2:79825362-79825381 Msa0930750:CDS 20.0%
!!! CTTTTGATAAAAACAAGAAT+AGG + chr6_2:79825685-79825704 None:intergenic 20.0%
!!! GATAGTGTAAAATTTGTTTT+TGG - chr6_2:79825818-79825837 Msa0930750:CDS 20.0%
!!! ATATGTTCAAGAATTGTTTT+TGG + chr6_2:79825936-79825955 None:intergenic 20.0%
!!! AGGAATCTCAATATATTTTA+TGG - chr6_2:79826175-79826194 Msa0930750:intron 20.0%
!!! ATTAGTCTTTAACTTTCATT+CGG - chr6_2:79826201-79826220 Msa0930750:intron 20.0%
!! TATTGTCTTGGTTTAATTAA+TGG + chr6_2:79826395-79826414 None:intergenic 20.0%
!! TCAGTTATATAATATTCACT+TGG + chr6_2:79826770-79826789 None:intergenic 20.0%
!! AATAATACTGTAACAGATTT+CGG - chr6_2:79826953-79826972 Msa0930750:CDS 20.0%
! AATCACAAGAACTTTAACAT+TGG + chr6_2:79824841-79824860 None:intergenic 25.0%
! AAAAAGATTGAGACTTTCAT+AGG + chr6_2:79824978-79824997 None:intergenic 25.0%
! ATCAACAAATGGAATAATGA+AGG - chr6_2:79825294-79825313 Msa0930750:CDS 25.0%
! ATAATGAAGGCAATTGAAAA+TGG - chr6_2:79825307-79825326 Msa0930750:CDS 25.0%
!! TTTACTTGATTTTCAGTGAA+TGG + chr6_2:79825355-79825374 None:intergenic 25.0%
! ACAAAAAATCAATGAGCAAT+TGG - chr6_2:79825423-79825442 Msa0930750:CDS 25.0%
! CAAAAAATCAATGAGCAATT+GGG - chr6_2:79825424-79825443 Msa0930750:CDS 25.0%
! AAAAAATCAATGAGCAATTG+GGG - chr6_2:79825425-79825444 Msa0930750:CDS 25.0%
! TTAGATGTTAGAGTAAACTA+CGG + chr6_2:79825722-79825741 None:intergenic 25.0%
!!! CTTTGTTTATTTTTTTCCAG+AGG - chr6_2:79825905-79825924 Msa0930750:CDS 25.0%
! AACAATTCTTGAACATATGA+AGG - chr6_2:79825938-79825957 Msa0930750:CDS 25.0%
!! TTATGGTTTGGAAAATTTGA+CGG - chr6_2:79826104-79826123 Msa0930750:intron 25.0%
! TCTTGGTTTAATTAATGGTA+TGG + chr6_2:79826390-79826409 None:intergenic 25.0%
! TAGTGTACAATTTATTGTCT+TGG + chr6_2:79826407-79826426 None:intergenic 25.0%
! AAATAAACATCAACAAGAAC+AGG - chr6_2:79826517-79826536 Msa0930750:CDS 25.0%
! CAATTAGTATATCTTGTGTT+AGG + chr6_2:79827685-79827704 None:intergenic 25.0%
TCAATGCTATTGAGAAAACA+TGG - chr6_2:79824880-79824899 Msa0930750:CDS 30.0%
! CTTTTGTGCTATCAAATTCA+AGG + chr6_2:79825055-79825074 None:intergenic 30.0%
! CTTGAATTTGATAGCACAAA+AGG - chr6_2:79825053-79825072 Msa0930750:CDS 30.0%
!!! ACAAAAGGTGCATTTTGATT+TGG - chr6_2:79825068-79825087 Msa0930750:CDS 30.0%
AAATCAAATGAATCCATGTC+CGG + chr6_2:79825114-79825133 None:intergenic 30.0%
ATCATTAAAGTGACATGTAG+CGG - chr6_2:79825769-79825788 Msa0930750:CDS 30.0%
!!! TGTTTATTTTTTTCCAGAGG+CGG - chr6_2:79825908-79825927 Msa0930750:CDS 30.0%
! TATGGTTTGGAAAATTTGAC+GGG - chr6_2:79826105-79826124 Msa0930750:intron 30.0%
TTCTGCTCGATTAAGTATTA+TGG + chr6_2:79826325-79826344 None:intergenic 30.0%
ACAAGAACTTTAACATTGGC+TGG + chr6_2:79824837-79824856 None:intergenic 35.0%
TGGTCTCAATTCAATTACCA+AGG - chr6_2:79824900-79824919 Msa0930750:CDS 35.0%
!! TGTTCTGAAGGATCAACAAA+TGG - chr6_2:79825283-79825302 Msa0930750:CDS 35.0%
GCTGTTAGGAAAATGATGAA+AGG - chr6_2:79825391-79825410 Msa0930750:CDS 35.0%
AATCATCTCTTGCCCTTATT+TGG + chr6_2:79825462-79825481 None:intergenic 35.0%
TCTTCTTTGTCTTCTTTGTC+CGG + chr6_2:79825546-79825565 None:intergenic 35.0%
AATAGGTAAAGAATGCGTAC+TGG + chr6_2:79825668-79825687 None:intergenic 35.0%
ATTACCAGTTTACCCTGAAA+AGG - chr6_2:79826230-79826249 Msa0930750:intron 35.0%
!! TTTGAGTTAGCTCCTTTTCA+GGG + chr6_2:79826245-79826264 None:intergenic 35.0%
!!! TTTTGAGTTAGCTCCTTTTC+AGG + chr6_2:79826246-79826265 None:intergenic 35.0%
CTGTATTGAAATCATCACAG+TGG - chr6_2:79826594-79826613 Msa0930750:intron 35.0%
TGCAGAACAACAATATCCAA+TGG - chr6_2:79826634-79826653 Msa0930750:intron 35.0%
CAACAATATCCAATGGCATA+TGG - chr6_2:79826641-79826660 Msa0930750:intron 35.0%
TTCCCAGAAAATTGATACCA+AGG - chr6_2:79826681-79826700 Msa0930750:intron 35.0%
! TGCCTTGGTATCAATTTTCT+GGG + chr6_2:79826686-79826705 None:intergenic 35.0%
! ATGCCTTGGTATCAATTTTC+TGG + chr6_2:79826687-79826706 None:intergenic 35.0%
TTATGATGTTCTTGTTGCTG+AGG + chr6_2:79826848-79826867 None:intergenic 35.0%
TTGACTGCATTATTCATCTG+AGG + chr6_2:79826896-79826915 None:intergenic 35.0%
TCAACCTAAAAAGCTAGGAA+GGG - chr6_2:79827516-79827535 Msa0930750:intron 35.0%
ACTACTTGAAGCTGAAATGC+CGG - chr6_2:79825092-79825111 Msa0930750:CDS 40.0%
ATATGTGGCATCATGCTGTT+AGG - chr6_2:79825377-79825396 Msa0930750:CDS 40.0%
AATGAGCAATTGGGGATTGA+GGG - chr6_2:79825433-79825452 Msa0930750:CDS 40.0%
GATTGAGGGTAGCCAAATAA+GGG - chr6_2:79825447-79825466 Msa0930750:CDS 40.0%
ACGCTTAAACGATGTACCAT+CGG - chr6_2:79825489-79825508 Msa0930750:CDS 40.0%
AACGATGTACCATCGGAAAA+AGG - chr6_2:79825496-79825515 Msa0930750:CDS 40.0%
TTCTTTGTCTTCTTTGTCCG+GGG + chr6_2:79825544-79825563 None:intergenic 40.0%
CTTCTTTGTCTTCTTTGTCC+GGG + chr6_2:79825545-79825564 None:intergenic 40.0%
TAAAGAATGCGTACTGGAAG+TGG + chr6_2:79825662-79825681 None:intergenic 40.0%
ATGTTGCATATCCATGATGC+AGG + chr6_2:79826733-79826752 None:intergenic 40.0%
TGCATCATGGATATGCAACA+TGG - chr6_2:79826732-79826751 Msa0930750:intron 40.0%
GCATCATGGATATGCAACAT+GGG - chr6_2:79826733-79826752 Msa0930750:intron 40.0%
ACTGATCATGATCATGCAGT+TGG - chr6_2:79826785-79826804 Msa0930750:intron 40.0%
!! AGTTGGTCTTGGAAACTTGA+TGG - chr6_2:79826802-79826821 Msa0930750:intron 40.0%
! ACATGCATTGGTGATTGTTG+TGG + chr6_2:79826872-79826891 None:intergenic 40.0%
TTCATCTGAGGAACATGCAT+TGG + chr6_2:79826884-79826903 None:intergenic 40.0%
TCAAGATCAAGAGCTAGGAA+GGG - chr6_2:79827042-79827061 Msa0930750:CDS 40.0%
TCAACATCAAGAGCTAGGAA+GGG - chr6_2:79827162-79827181 Msa0930750:CDS 40.0%
TCAACCTCAAAAGCTAGGAA+GGG - chr6_2:79827324-79827343 Msa0930750:intron 40.0%
TCAGACTCGAAAGCTAAGAA+GGG - chr6_2:79827438-79827457 Msa0930750:CDS 40.0%
!!! AGCTTTTTAGGTTGAGCATG+TGG + chr6_2:79827511-79827530 None:intergenic 40.0%
CATGCTCAACCTAAAAAGCT+AGG - chr6_2:79827511-79827530 Msa0930750:intron 40.0%
CTCAACCTAAAAAGCTAGGA+AGG - chr6_2:79827515-79827534 Msa0930750:intron 40.0%
CAATGAGCAATTGGGGATTG+AGG - chr6_2:79825432-79825451 Msa0930750:CDS 45.0%
GGATTGAGGGTAGCCAAATA+AGG - chr6_2:79825446-79825465 Msa0930750:CDS 45.0%
! TCTTCGTCACCTTTTTCCGA+TGG + chr6_2:79825508-79825527 None:intergenic 45.0%
GAAGACGAAGAAGACGAAGA+AGG - chr6_2:79825570-79825589 Msa0930750:CDS 45.0%
!!! ATTGTTTTTGGTACCGCCTC+TGG + chr6_2:79825924-79825943 None:intergenic 45.0%
!! TGAAGGTGCCTAGACTTACA+AGG - chr6_2:79825955-79825974 Msa0930750:CDS 45.0%
!! GAAGGTGCCTAGACTTACAA+GGG - chr6_2:79825956-79825975 Msa0930750:CDS 45.0%
!! AGCTCCTTTTCAGGGTAAAC+TGG + chr6_2:79826237-79826256 None:intergenic 45.0%
GAACTGCAACCATATGCCAT+TGG + chr6_2:79826653-79826672 None:intergenic 45.0%
! CATGATCATGCAGTTGGTCT+TGG - chr6_2:79826791-79826810 Msa0930750:intron 45.0%
CAATGATGTTGTACCGAGTG+TGG - chr6_2:79826913-79826932 Msa0930750:CDS 45.0%
TGAAGCTACAATGCAAGTGG+AGG - chr6_2:79826976-79826995 Msa0930750:CDS 45.0%
! CTTCCTAGCTCTTGATCTTG+AGG + chr6_2:79827043-79827062 None:intergenic 45.0%
CTCAAGATCAAGAGCTAGGA+AGG - chr6_2:79827041-79827060 Msa0930750:CDS 45.0%
CTCAACATCAAGAGCTAGGA+AGG - chr6_2:79827161-79827180 Msa0930750:CDS 45.0%
TCAACCTCAAGAGCTAGGAA+GGG - chr6_2:79827282-79827301 Msa0930750:intron 45.0%
CTCAACCTCAAAAGCTAGGA+AGG - chr6_2:79827323-79827342 Msa0930750:intron 45.0%
CTCAGACTCGAAAGCTAAGA+AGG - chr6_2:79827437-79827456 Msa0930750:CDS 45.0%
ACCTAAAAAGCTAGGAAGGG+TGG - chr6_2:79827519-79827538 Msa0930750:intron 45.0%
!! ACCACCCTTCCTAGCTTTTT+AGG + chr6_2:79827523-79827542 None:intergenic 45.0%
TAAAAAGCTAGGAAGGGTGG+TGG - chr6_2:79827522-79827541 Msa0930750:intron 45.0%
!!! TAGCTTTTGAGGCTGAGCTT+GGG + chr6_2:79827554-79827573 None:intergenic 45.0%
TCAGCCTCAAAAGCTAGGAA+GGG - chr6_2:79827558-79827577 Msa0930750:intron 45.0%
GGCTGGAAACTCATTCCCAA+AGG + chr6_2:79824820-79824839 None:intergenic 50.0%
TGAAGCTGAAATGCCGGACA+TGG - chr6_2:79825098-79825117 Msa0930750:CDS 50.0%
GCAGTGACGATGTGTTCTGA+AGG - chr6_2:79825271-79825290 Msa0930750:CDS 50.0%
AAGATATACCCGAACCACCC+CGG - chr6_2:79825524-79825543 Msa0930750:CDS 50.0%
TTTGTCTTCTTTGTCCGGGG+TGG + chr6_2:79825541-79825560 None:intergenic 50.0%
CGAAGAAGACGAAGAAGGAG+CGG - chr6_2:79825575-79825594 Msa0930750:CDS 50.0%
GAAGAAGACGAAGAAGGAGC+GGG - chr6_2:79825576-79825595 Msa0930750:CDS 50.0%
ACCTGCTCCCTTGTAAGTCT+AGG + chr6_2:79825966-79825985 None:intergenic 50.0%
GCAGGTAGCTAGTCATCTTC+AGG - chr6_2:79825980-79825999 Msa0930750:CDS 50.0%
AGAACAGGAGCAAGCTCTCA+TGG - chr6_2:79826532-79826551 Msa0930750:CDS 50.0%
AGCAGCAGCATGTGAACTGT+TGG + chr6_2:79826567-79826586 None:intergenic 50.0%
GGCTGATGAGGAAAATGCCT+TGG + chr6_2:79826701-79826720 None:intergenic 50.0%
CCATGATGCAGGTTCGTGTT+GGG + chr6_2:79826722-79826741 None:intergenic 50.0%
TCCATGATGCAGGTTCGTGT+TGG + chr6_2:79826723-79826742 None:intergenic 50.0%
TCCACGATGTTGTCCACACT+CGG + chr6_2:79826929-79826948 None:intergenic 50.0%
CGGTGAAGCTACAATGCAAG+TGG - chr6_2:79826973-79826992 Msa0930750:CDS 50.0%
GCTACAATGCAAGTGGAGGT+TGG - chr6_2:79826980-79826999 Msa0930750:CDS 50.0%
TCAGGTTCAAGAGCTGGGAA+GGG - chr6_2:79827006-79827025 Msa0930750:CDS 50.0%
GGTCCTCAAGATCAAGAGCT+AGG - chr6_2:79827037-79827056 Msa0930750:CDS 50.0%
AGATCAAGAGCTAGGAAGGG+TGG - chr6_2:79827045-79827064 Msa0930750:CDS 50.0%
TCAAGAGCTAGGAAGGATGG+CGG - chr6_2:79827090-79827109 Msa0930750:CDS 50.0%
! TTTCCTAGCTCTTGAGCCTG+AGG + chr6_2:79827121-79827140 None:intergenic 50.0%
TCAGGCTCAAGAGCTAGGAA+AGG - chr6_2:79827120-79827139 Msa0930750:CDS 50.0%
TCAAGAGCTAGGAAAGGTGG+TGG - chr6_2:79827126-79827145 Msa0930750:CDS 50.0%
CAGGCTCAACATCAAGAGCT+AGG - chr6_2:79827157-79827176 Msa0930750:CDS 50.0%
ACATCAAGAGCTAGGAAGGG+TGG - chr6_2:79827165-79827184 Msa0930750:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+GGG - chr6_2:79827084-79827103 Msa0930750:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG - chr6_2:79827120-79827139 Msa0930750:CDS 50.0%
AGCTCTTGAGGTTGAGCATG+TGG + chr6_2:79827277-79827296 None:intergenic 50.0%
CATGCTCAACCTCAAGAGCT+AGG - chr6_2:79827277-79827296 Msa0930750:intron 50.0%
CTCAACCTCAAGAGCTAGGA+AGG - chr6_2:79827281-79827300 Msa0930750:intron 50.0%
!!! AGCTTTTGAGGTTGAGCCTG+TGG + chr6_2:79827319-79827338 None:intergenic 50.0%
CAGGCTCAACCTCAAAAGCT+AGG - chr6_2:79827319-79827338 Msa0930750:intron 50.0%
ACCTCAAAAGCTAGGAAGGG+TGG - chr6_2:79827327-79827346 Msa0930750:intron 50.0%
!! ACCACCCTTCCTAGCTTTTG+AGG + chr6_2:79827331-79827350 None:intergenic 50.0%
TCAAAAGCTAGGAAGGGTGG+TGG - chr6_2:79827330-79827349 Msa0930750:intron 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG - chr6_2:79827120-79827139 Msa0930750:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+TGG - chr6_2:79827084-79827103 Msa0930750:CDS 50.0%
! ACCACCATTCCTAGCTCTTG+AGG + chr6_2:79827409-79827428 None:intergenic 50.0%
TCAAGAGCTAGGAATGGTGG+TGG - chr6_2:79827408-79827427 Msa0930750:CDS 50.0%
GACTCGAAAGCTAAGAAGGG+TGG - chr6_2:79827441-79827460 Msa0930750:CDS 50.0%
TCGAAAGCTAAGAAGGGTGG+TGG - chr6_2:79827444-79827463 Msa0930750:CDS 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG - chr6_2:79827120-79827139 Msa0930750:CDS 50.0%
!!! AGCTTTTGAGGCTGAGCTTG+GGG + chr6_2:79827553-79827572 None:intergenic 50.0%
!!! CTAGCTTTTGAGGCTGAGCT+TGG + chr6_2:79827555-79827574 None:intergenic 50.0%
CAAGCTCAGCCTCAAAAGCT+AGG - chr6_2:79827553-79827572 Msa0930750:intron 50.0%
CTCAGCCTCAAAAGCTAGGA+AGG - chr6_2:79827557-79827576 Msa0930750:intron 50.0%
CAGCCTCAAAAGCTAGGAAG+GGG - chr6_2:79827559-79827578 Msa0930750:intron 50.0%
AGCCTCAAAAGCTAGGAAGG+GGG - chr6_2:79827560-79827579 Msa0930750:intron 50.0%
TCAGGCTCAAGAGCTAGGAA+GGG - chr6_2:79827120-79827139 Msa0930750:CDS 50.0%
TCAGCCTCAAGAGCTAGGAA+GGG - chr6_2:79827084-79827103 Msa0930750:CDS 50.0%
! TTTCCCCTTCCTAGCTCTTG+AGG + chr6_2:79827649-79827668 None:intergenic 50.0%
AAGAGCTAGGAAGGGGAAAG+AGG - chr6_2:79827650-79827669 Msa0930750:CDS 50.0%
TTCTTTGTCCGGGGTGGTTC+GGG + chr6_2:79825535-79825554 None:intergenic 55.0%
CTTCTTTGTCCGGGGTGGTT+CGG + chr6_2:79825536-79825555 None:intergenic 55.0%
GCCTAGACTTACAAGGGAGC+AGG - chr6_2:79825962-79825981 Msa0930750:CDS 55.0%
GGAGCAAGCTCTCATGGTTG+TGG - chr6_2:79826538-79826557 Msa0930750:CDS 55.0%
AGGTTCGTGTTGGGCTGATG+AGG + chr6_2:79826713-79826732 None:intergenic 55.0%
CCCAACACGAACCTGCATCA+TGG - chr6_2:79826719-79826738 Msa0930750:intron 55.0%
ACCGAGTGTGGACAACATCG+TGG - chr6_2:79826925-79826944 Msa0930750:CDS 55.0%
TGGTCCTCAGGTTCAAGAGC+TGG - chr6_2:79827000-79827019 Msa0930750:CDS 55.0%
GGTCCTCAGGTTCAAGAGCT+GGG - chr6_2:79827001-79827020 Msa0930750:CDS 55.0%
CTTCCCAGCTCTTGAACCTG+AGG + chr6_2:79827007-79827026 None:intergenic 55.0%
CTCAGGTTCAAGAGCTGGGA+AGG - chr6_2:79827005-79827024 Msa0930750:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG - chr6_2:79827048-79827067 Msa0930750:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG - chr6_2:79827083-79827102 Msa0930750:CDS 55.0%
GCCTCAAGAGCTAGGAAGGA+TGG - chr6_2:79827087-79827106 Msa0930750:CDS 55.0%
! GCCATCCTTCCTAGCTCTTG+AGG + chr6_2:79827091-79827110 None:intergenic 55.0%
GGCTCAAGAGCTAGGAAAGG+TGG - chr6_2:79827123-79827142 Msa0930750:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG - chr6_2:79827048-79827067 Msa0930750:CDS 55.0%
AGCTCTTGAGGCTGAGCTTG+AGG + chr6_2:79827199-79827218 None:intergenic 55.0%
CAAGCTCAGCCTCAAGAGCT+AGG - chr6_2:79827199-79827218 Msa0930750:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG - chr6_2:79827083-79827102 Msa0930750:CDS 55.0%
! ACCACCCTTCCTAGCTCTTG+AGG + chr6_2:79827049-79827068 None:intergenic 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG + chr6_2:79827241-79827260 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG - chr6_2:79827119-79827138 Msa0930750:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG - chr6_2:79827048-79827067 Msa0930750:CDS 55.0%
ACCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827285-79827304 Msa0930750:intron 55.0%
! ACCACCCTTCCTAGCTCTTG+AGG + chr6_2:79827049-79827068 None:intergenic 55.0%
TGTCCTCAGGCTCAAGAGCT+AGG - chr6_2:79827355-79827374 Msa0930750:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG + chr6_2:79827241-79827260 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG - chr6_2:79827119-79827138 Msa0930750:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG - chr6_2:79827048-79827067 Msa0930750:CDS 55.0%
AGCTCTTGAGGCTGAGCTTG+AGG + chr6_2:79827199-79827218 None:intergenic 55.0%
CAAGCTCAGCCTCAAGAGCT+AGG - chr6_2:79827199-79827218 Msa0930750:CDS 55.0%
GCCTCAAGAGCTAGGAATGG+TGG - chr6_2:79827405-79827424 Msa0930750:CDS 55.0%
! AAGCTAAGAAGGGTGGTGGC+TGG - chr6_2:79827448-79827467 Msa0930750:CDS 55.0%
! CTTCCTAGCTCTTGAGCCTG+AGG + chr6_2:79827241-79827260 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG - chr6_2:79827119-79827138 Msa0930750:CDS 55.0%
GCCTCAAAAGCTAGGAAGGG+GGG - chr6_2:79827561-79827580 Msa0930750:intron 55.0%
!! ACCCCCCTTCCTAGCTTTTG+AGG + chr6_2:79827565-79827584 None:intergenic 55.0%
CTCAGGCTCAAGAGCTAGGA+AGG - chr6_2:79827119-79827138 Msa0930750:CDS 55.0%
TCAAGAGCTAGGAAGGGTGG+TGG - chr6_2:79827048-79827067 Msa0930750:CDS 55.0%
CTCAGCCTCAAGAGCTAGGA+AGG - chr6_2:79827083-79827102 Msa0930750:CDS 55.0%
CAGCCTCAAGAGCTAGGAAG+GGG - chr6_2:79827085-79827104 Msa0930750:CDS 55.0%
GAAGACGAAGAAGGAGCGGG+TGG - chr6_2:79825579-79825598 Msa0930750:CDS 60.0%
CGAAGAAGGAGCGGGTGGTA+TGG - chr6_2:79825584-79825603 Msa0930750:CDS 60.0%
! GCAAGTGGAGGTTGGTCCTC+AGG - chr6_2:79826988-79827007 Msa0930750:CDS 60.0%
GGTTCAAGAGCTGGGAAGGG+TGG - chr6_2:79827009-79827028 Msa0930750:CDS 60.0%
TCAAGAGCTGGGAAGGGTGG+TGG - chr6_2:79827012-79827031 Msa0930750:CDS 60.0%
! GAGCTAGGAAGGGTGGTGGT+TGG - chr6_2:79827052-79827071 Msa0930750:CDS 60.0%
! AAGGGTGGTGGTTGGTCCTC+AGG - chr6_2:79827060-79827079 Msa0930750:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+AGG + chr6_2:79827079-79827098 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG - chr6_2:79827079-79827098 Msa0930750:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG - chr6_2:79827115-79827134 Msa0930750:CDS 60.0%
! AAAGGTGGTGGCTGCTCGTC+AGG - chr6_2:79827138-79827157 Msa0930750:CDS 60.0%
GCCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827207-79827226 Msa0930750:CDS 60.0%
GAGCTAGGAAGGGTGGTGAC+TGG - chr6_2:79827214-79827233 Msa0930750:CDS 60.0%
! AAGGGTGGTGACTGGTCCTC+AGG - chr6_2:79827222-79827241 Msa0930750:intron 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG - chr6_2:79827115-79827134 Msa0930750:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827243-79827262 Msa0930750:intron 60.0%
AAGGGTGGTTGCTGCTCCAC+AGG - chr6_2:79827300-79827319 Msa0930750:intron 60.0%
! AAGGGTGGTGGCTTGTCCTC+AGG - chr6_2:79827342-79827361 Msa0930750:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827243-79827262 Msa0930750:intron 60.0%
!! GAGCTAGGAATGGTGGTGGC+TGG - chr6_2:79827412-79827431 Msa0930750:CDS 60.0%
GGTCCTCAGGCTCAAGAGCT+AGG - chr6_2:79827115-79827134 Msa0930750:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827243-79827262 Msa0930750:intron 60.0%
! AAGCTAGGAAGGGTGGTGGC+TGG - chr6_2:79827334-79827353 Msa0930750:intron 60.0%
AAGCTAGGAAGGGGGGTGAC+TGG - chr6_2:79827568-79827587 Msa0930750:intron 60.0%
AGCTCTTGAGCCTGAGCCTG+AGG + chr6_2:79827595-79827614 None:intergenic 60.0%
CAGGCTCAGGCTCAAGAGCT+AGG - chr6_2:79827595-79827614 Msa0930750:CDS 60.0%
GGCTCAAGAGCTAGGAAGGG+TGG - chr6_2:79827243-79827262 Msa0930750:intron 60.0%
! AAGGGTGGTGGCTACTCCAC+AGG - chr6_2:79827618-79827637 Msa0930750:CDS 60.0%
AGCTCTTGAGGCTGAGCCTG+TGG + chr6_2:79827079-79827098 None:intergenic 60.0%
CAGGCTCAGCCTCAAGAGCT+AGG - chr6_2:79827079-79827098 Msa0930750:CDS 60.0%
! GAGCTAGGAAGGATGGCGGC+TGG - chr6_2:79827094-79827113 Msa0930750:CDS 65.0%
! AAGGATGGCGGCTGGTCCTC+AGG - chr6_2:79827102-79827121 Msa0930750:CDS 65.0%
! GAGCTAGGAAGGGTGGTGGC+TGG - chr6_2:79827172-79827191 Msa0930750:CDS 65.0%
! GAGCTAGGAAGGGTGGTGGC+TGG - chr6_2:79827172-79827191 Msa0930750:CDS 65.0%
! AAGGGTGGTGGCTGGTCCTC+AGG - chr6_2:79827024-79827043 Msa0930750:CDS 65.0%
! AAGGGGGGTGACTGGTCCTC+AGG - chr6_2:79827576-79827595 Msa0930750:intron 65.0%
! GGTGACTGGTCCTCAGGCTC+AGG - chr6_2:79827228-79827247 Msa0930750:intron 65.0%
! GAGCTGGGAAGGGTGGTGGC+TGG - chr6_2:79827016-79827035 Msa0930750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79824807 79827705 79824807 ID=Msa0930750;Name=Msa0930750
chr6_2 mRNA 79824807 79827705 79824807 ID=Msa0930750-mRNA-1;Parent=Msa0930750;Name=Msa0930750-mRNA-1;_AED=0.03;_eAED=0.06;_QI=0|0|0|0.8|1|1|5|0|646
chr6_2 exon 79827591 79827705 79827591 ID=Msa0930750-mRNA-1:exon:13867;Parent=Msa0930750-mRNA-1
chr6_2 exon 79827338 79827487 79827338 ID=Msa0930750-mRNA-1:exon:13866;Parent=Msa0930750-mRNA-1
chr6_2 exon 79826845 79827237 79826845 ID=Msa0930750-mRNA-1:exon:13865;Parent=Msa0930750-mRNA-1
chr6_2 exon 79826511 79826587 79826511 ID=Msa0930750-mRNA-1:exon:13864;Parent=Msa0930750-mRNA-1
chr6_2 exon 79824807 79826012 79824807 ID=Msa0930750-mRNA-1:exon:13863;Parent=Msa0930750-mRNA-1
chr6_2 CDS 79827591 79827705 79827591 ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2 CDS 79827338 79827487 79827338 ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2 CDS 79826845 79827237 79826845 ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2 CDS 79826511 79826587 79826511 ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
chr6_2 CDS 79824807 79826012 79824807 ID=Msa0930750-mRNA-1:cds;Parent=Msa0930750-mRNA-1
Gene Sequence

>Msa0930750

ATGGATTTTTCCTTTGGGAATGAGTTTCCAGCCAATGTTAAAGTTCTTGTGATTGATCATGATATCGATCTTCTCAATGCTATTGAGAAAACATGGTCTCAATTCAATTACCAAGTTACTACATGTTCGACAGTTTCTTCAGCCTTGAATTTGATAGCACAAAAGGTGCATTTTGATTTGGTACTACTTGAAGCTGAAATGCCGGACATGGATTCATTTGATTTCTTGCAAAAAATTACACAACAAGTCGATATTCCTGTCATTATGACGATGTGTTCTGAAGGATCAACAAATGGAATAATGAAGGCAATTGAAAATGGAGCTTGTGACTGTTTTGTCAAGCCATTCACTGAAAATCAAGTAAAGTATATGTGGCATCATGCTGTTAGGAAAATGATGAAAGGAAATAAAAAACAAAAAATCAATGAGCAATTGGGGATTGAGGGTAGCCAAATAAGGGCAAGAGATGATTCAAATTTACGCTTAAACGATGTACCATCGGAAAAAGGTGACGAAGATATACCCGAACCACCCCGGACAAAGAAGACAAAGAAGAGAAAGAAGACGAAGAAGACGAAGAAGGAGCGGGTGGTATGGTCTTTAGAATTACATGAGAAATTCATGAATGCTGTTAAAGAACTTGATGCTTCCACTTCCAAGGCGGTACCAAAAACAATTCTTGAACATATGAAGGTGCCTAGACTTACAAGGGAGCAGGTAGCTAGTCATCTTCAGAAGTATAGACTGTATTTAAATAAACATCAACAAGAACAGGAGCAAGCTCTCATGGTTGTGGAATCCAACAGTTCACATGCTGCTGCTCATGCTGCTGTATTGAAATCATCACAGTGGTCTCACAATTCTCATGTTGCAGAACAACAATATCCAATGGCATATGGTTGCAGTTCTCAACAAGTTCCCAGAAAATTGATACCAAGGCATTTTCCTCATCAGCCCAACACGAACCTGCATCATGGATATGCAACATGGGAGCAGCAATTTCCAAGTGAATATTATATAACTGATCATGATCATGCAGTTGGTCTTGGAAACTTGATGGCGAATAATAGTAATGCATTGCCTCAGCAACAAGAACATCATAATCCACAACAATCACCAATGCATGTTCCTCAGATGAATAATGCAGTCAATGATGTTGTACCGAGTGTGGACAACATCGTGGAAGTGAATAATACTGTAACAGATTTCGGTGAAGCTACAATGCAAGTGGAGGTTGGTCCTCAGGTTCAAGAGCTGGGAAGGGTGGTGGCTGGTCCTCAAGATCAAGAGCTAGGAAGGGTGGTGGTTGGTCCTCAGGCTCAGCCTCAAGAGCTAGGAAGGATGGCGGCTGGTCCTCAGGCTCAAGAGCTAGGAAAGGTGGTGGCTGCTCGTCAGGCTCAACATCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAAGGGTGGTGACTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTGCTCCACATGCTCAACCTCAAGAGCTAGGAAGGGTGGTTGCTGCTCCACAGGCTCAACCTCAAAAGCTAGGAAGGGTGGTGGCTTGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTGGTCCTCAAGCTCAGCCTCAAGAGCTAGGAATGGTGGTGGCTGGTTCTCAGACTCGAAAGCTAAGAAGGGTGGTGGCTGGTCCTCAGGCTCAAGAGCTAGGAAGGGTGGCTGCTGCTCCACATGCTCAACCTAAAAAGCTAGGAAGGGTGGTGGCTGGTCCCCAAGCTCAGCCTCAAAAGCTAGGAAGGGGGGTGACTGGTCCTCAGGCTCAGGCTCAAGAGCTAGGAAGGGTGGTGGCTACTCCACAGGCTCAGCCTCAAGAGCTAGGAAGGGGAAAGAGGTATAAGAAGCCTAACACAAGATATACTAATTGA
Protein sequence

>Msa0930750

MDFSFGNEFPANVKVLVIDHDIDLLNAIEKTWSQFNYQVTTCSTVSSALNLIAQKVHFDLVLLEAEMPDMDSFDFLQKITQQVDIPVIMTMCSEGSTNGIMKAIENGACDCFVKPFTENQVKYMWHHAVRKMMKGNKKQKINEQLGIEGSQIRARDDSNLRLNDVPSEKGDEDIPEPPRTKKTKKRKKTKKTKKERVVWSLELHEKFMNAVKELDASTSKAVPKTILEHMKVPRLTREQVASHLQKYRLYLNKHQQEQEQALMVVESNSSHAAAHAAVLKSSQWSHNSHVAEQQYPMAYGCSSQQVPRKLIPRHFPHQPNTNLHHGYATWEQQFPSEYYITDHDHAVGLGNLMANNSNALPQQQEHHNPQQSPMHVPQMNNAVNDVVPSVDNIVEVNNTVTDFGEATMQVEVGPQVQELGRVVAGPQDQELGRVVVGPQAQPQELGRMAAGPQAQELGKVVAARQAQHQELGRVVAGPQAQPQELGRVVTGPQAQELGRVVAAPHAQPQELGRVVAAPQAQPQKLGRVVACPQAQELGRVVAGPQAQPQELGMVVAGSQTRKLRRVVAGPQAQELGRVAAAPHAQPKKLGRVVAGPQAQPQKLGRGVTGPQAQAQELGRVVATPQAQPQELGRGKRYKKPNTRYTN*