Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002270 | Msa0636720 | 0.812317 | 4.505200e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002270 | MtrunA17_Chr8g0348061 | 98.031 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 0.0 | 520 |
| Msa0002270 | MtrunA17_Chr8g0357051 | 51.934 | 181 | 81 | 3 | 65 | 244 | 54 | 229 | 2.58e-68 | 212 |
| Msa0002270 | MtrunA17_Chr2g0310191 | 55.556 | 162 | 70 | 1 | 84 | 245 | 70 | 229 | 2.21e-65 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002270 | AT2G46220.1 | 56.000 | 250 | 94 | 3 | 1 | 246 | 1 | 238 | 1.09e-95 | 281 |
| Msa0002270 | AT1G79510.2 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.31e-67 | 209 |
| Msa0002270 | AT1G79510.1 | 55.689 | 167 | 71 | 2 | 79 | 244 | 71 | 235 | 4.31e-67 | 209 |
| Msa0002270 | AT1G16320.1 | 50.829 | 181 | 81 | 3 | 72 | 245 | 56 | 235 | 2.29e-64 | 202 |
Find 72 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATTATTACTTGAATA+TGG | 0.136305 | 1_1:-4097409 | Msa0002270:CDS |
| GGATCCTCTGAATACGTTTA+TGG | 0.205720 | 1_1:-4095269 | Msa0002270:CDS |
| GAGATTATGTTGTGGATAAT+TGG | 0.235184 | 1_1:+4097769 | None:intergenic |
| TGAGGGGTAACGTGAATTTC+CGG | 0.243453 | 1_1:+4097654 | None:intergenic |
| AGAATTACAAATCGATCTTT+TGG | 0.258281 | 1_1:-4095240 | Msa0002270:CDS |
| AATGTGGATGGGTTTGGATT+AGG | 0.300340 | 1_1:+4097816 | None:intergenic |
| CGGGAAAATGTGGATGGGTT+TGG | 0.302517 | 1_1:+4097810 | None:intergenic |
| GCCTGTTGAGAATGTCATTA+TGG | 0.318537 | 1_1:-4095152 | Msa0002270:CDS |
| CAGAATTATTACTTGAATAT+GGG | 0.350053 | 1_1:-4097408 | Msa0002270:CDS |
| TATGCAAAATTGAACGCAAT+TGG | 0.355570 | 1_1:-4097579 | Msa0002270:CDS |
| TATACATAATATGCACAATT+TGG | 0.380734 | 1_1:+4094853 | None:intergenic |
| ACGCAATTGGGTCAAAGAAC+AGG | 0.385908 | 1_1:-4097566 | Msa0002270:CDS |
| CCGGGAAAATTGAATTATGA+AGG | 0.386360 | 1_1:+4097740 | None:intergenic |
| CAGGGATGATATTGTATTGA+AGG | 0.391549 | 1_1:-4095290 | Msa0002270:CDS |
| GAGGGGTAACGTGAATTTCC+GGG | 0.402324 | 1_1:+4097655 | None:intergenic |
| GATCCTCTGAATACGTTTAT+GGG | 0.403315 | 1_1:-4095268 | Msa0002270:CDS |
| TTGCATAGGGTTTGAAATTG+TGG | 0.412813 | 1_1:+4097595 | None:intergenic |
| ATGGTTCGCTGGACGGTTCA+CGG | 0.414334 | 1_1:-4095133 | Msa0002270:CDS |
| AACTTAGCTTTGATATCTAT+AGG | 0.428899 | 1_1:-4097335 | Msa0002270:intron |
| GAAAGCCGCGGTAGGTTTGA+TGG | 0.435547 | 1_1:-4095091 | Msa0002270:CDS |
| TGGTTCGCTGGACGGTTCAC+GGG | 0.459878 | 1_1:-4095132 | Msa0002270:CDS |
| ATGCAAAATTGAACGCAATT+GGG | 0.472060 | 1_1:-4097578 | Msa0002270:CDS |
| ATTTCGAAGTAAGTTGGTCC+TGG | 0.472664 | 1_1:+4094932 | None:intergenic |
| GAAGAATTGATTCAATCTCT+TGG | 0.484168 | 1_1:-4094968 | Msa0002270:CDS |
| TCAACTAGTTACCGCAGATC+AGG | 0.485544 | 1_1:+4094701 | None:intergenic |
| ACCATAATGACATTCTCAAC+AGG | 0.489525 | 1_1:+4095151 | None:intergenic |
| AGTTCTTTATAAAATAGATC+AGG | 0.492246 | 1_1:+4097354 | None:intergenic |
| CTTGGCTGTCCGCAGACCCC+AGG | 0.492505 | 1_1:-4094950 | Msa0002270:CDS |
| AGGCAAGATTTACGAGCATC+GGG | 0.493320 | 1_1:-4095041 | Msa0002270:CDS |
| TTATGCTATACGAACTTTGA+GGG | 0.497026 | 1_1:-4097385 | Msa0002270:CDS |
| GTTATGCTATACGAACTTTG+AGG | 0.499486 | 1_1:-4097386 | Msa0002270:CDS |
| GATTTCGAACCACTCTTCAC+CGG | 0.503377 | 1_1:+4097456 | None:intergenic |
| CGGCTTTCCCATGGAACTCG+TGG | 0.505084 | 1_1:+4095106 | None:intergenic |
| AGTTATTAAGCGGGAAAATG+TGG | 0.505167 | 1_1:+4097800 | None:intergenic |
| GAAGATATTTCGAAGTAAGT+TGG | 0.507014 | 1_1:+4094926 | None:intergenic |
| GATCGGAACGTGAAGCAGTA+TGG | 0.508351 | 1_1:-4097492 | Msa0002270:CDS |
| AAGGCAAGATTTACGAGCAT+CGG | 0.509399 | 1_1:-4095042 | Msa0002270:CDS |
| CGGGAAAATTGAATTATGAA+GGG | 0.510510 | 1_1:+4097741 | None:intergenic |
| TTTCGAAGTAAGTTGGTCCT+GGG | 0.517746 | 1_1:+4094933 | None:intergenic |
| ACGGGATCCCACGAGTTCCA+TGG | 0.525112 | 1_1:-4095114 | Msa0002270:CDS |
| AACCTACCGCGGCTTTCCCA+TGG | 0.527295 | 1_1:+4095097 | None:intergenic |
| GAAGATTTCATGTGAAGTGA+AGG | 0.530001 | 1_1:-4097541 | Msa0002270:CDS |
| CGGGATCCCACGAGTTCCAT+GGG | 0.531141 | 1_1:-4095113 | Msa0002270:CDS |
| ATTAAGCGGGAAAATGTGGA+TGG | 0.535756 | 1_1:+4097804 | None:intergenic |
| AGAATGTCATTATGGTTCGC+TGG | 0.537301 | 1_1:-4095144 | Msa0002270:CDS |
| GACTCTTCTAGTACACTCCC+CGG | 0.556564 | 1_1:-4097673 | Msa0002270:CDS |
| ACTGACATCACTTTAAACCT+AGG | 0.556783 | 1_1:+4094992 | None:intergenic |
| CGCAATTGGGTCAAAGAACA+GGG | 0.559140 | 1_1:-4097565 | Msa0002270:CDS |
| GGCTTTCCCATGGAACTCGT+GGG | 0.560830 | 1_1:+4095107 | None:intergenic |
| TTAAGCGGGAAAATGTGGAT+GGG | 0.562964 | 1_1:+4097805 | None:intergenic |
| TGTCATTATGGTTCGCTGGA+CGG | 0.563694 | 1_1:-4095140 | Msa0002270:CDS |
| ATATCTTGCCATGGAATCGA+AGG | 0.566004 | 1_1:+4095215 | None:intergenic |
| TTTGTCAAGTTTATACTCAG+AGG | 0.572049 | 1_1:+4095066 | None:intergenic |
| GATTTATTGAGTTATTAAGC+GGG | 0.575745 | 1_1:+4097791 | None:intergenic |
| GACATCACTTTAAACCTAGG+AGG | 0.582014 | 1_1:+4094995 | None:intergenic |
| GGATTTATTGAGTTATTAAG+CGG | 0.596461 | 1_1:+4097790 | None:intergenic |
| TAAGTTGGTCCTGGGGTCTG+CGG | 0.603301 | 1_1:+4094941 | None:intergenic |
| AATGGTTTATATGTATCTGA+TGG | 0.614914 | 1_1:-4094727 | Msa0002270:three_prime_UTR |
| TAGGTTTAAAGTGATGTCAG+TGG | 0.634165 | 1_1:-4094990 | Msa0002270:CDS |
| TTCGAAGTAAGTTGGTCCTG+GGG | 0.639399 | 1_1:+4094934 | None:intergenic |
| TGCTATACGAACTTTGAGGG+AGG | 0.642836 | 1_1:-4097382 | Msa0002270:CDS |
| AGGGGTAACGTGAATTTCCG+GGG | 0.645824 | 1_1:+4097656 | None:intergenic |
| TTCCATGGGAAAGCCGCGGT+AGG | 0.661780 | 1_1:-4095099 | Msa0002270:CDS |
| TCTGATGGTGTCCTGATCTG+CGG | 0.665119 | 1_1:-4094712 | Msa0002270:three_prime_UTR |
| TGGTTCGAAATCGAGCAAAG+AGG | 0.665218 | 1_1:-4097445 | Msa0002270:CDS |
| GGGAAAATGAGATTATGTTG+TGG | 0.667233 | 1_1:+4097761 | None:intergenic |
| GAGTATAAACTTGACAAACA+AGG | 0.672357 | 1_1:-4095061 | Msa0002270:CDS |
| ATACCCATAAACGTATTCAG+AGG | 0.674215 | 1_1:+4095265 | None:intergenic |
| CGAGTTCCATGGGAAAGCCG+CGG | 0.685486 | 1_1:-4095103 | Msa0002270:CDS |
| TTACAATATAAATATATACA+CGG | 0.686544 | 1_1:+4094668 | None:intergenic |
| AGGTTCCATCAAACCTACCG+CGG | 0.698339 | 1_1:+4095086 | None:intergenic |
| GGATAGACATAAACAGTGTG+TGG | 0.720922 | 1_1:-4095177 | Msa0002270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATATAAATATATACA+CGG | + | chr1_1:4097902-4097921 | None:intergenic | 10.0% |
| !!! | TGAAAATTTCAATTTTTTTC+CGG | + | chr1_1:4094849-4094868 | None:intergenic | 15.0% |
| !!! | TTTTTCAACTTATTTTCATA+AGG | - | chr1_1:4095521-4095540 | Msa0002270:intron | 15.0% |
| !! | AAATGGTCAATTTAATTATT+TGG | - | chr1_1:4096115-4096134 | Msa0002270:intron | 15.0% |
| !! | AATGGTCAATTTAATTATTT+GGG | - | chr1_1:4096116-4096135 | Msa0002270:intron | 15.0% |
| !!! | ATTTATAGTTGTGATATTTT+TGG | - | chr1_1:4096252-4096271 | Msa0002270:intron | 15.0% |
| !!! | ACTTTTTTTATAACCTATAT+TGG | - | chr1_1:4096340-4096359 | Msa0002270:intron | 15.0% |
| !!! | ACATATTTGATTTCATATAT+TGG | + | chr1_1:4097109-4097128 | None:intergenic | 15.0% |
| !! | ACAAAAAATCCATAAAAAGT+AGG | - | chr1_1:4094705-4094724 | Msa0002270:three_prime_UTR | 20.0% |
| !! | CAAAAAATCCATAAAAAGTA+GGG | - | chr1_1:4094706-4094725 | Msa0002270:three_prime_UTR | 20.0% |
| !!! | TTTGGATTAGGATATTTTTA+GGG | + | chr1_1:4094742-4094761 | None:intergenic | 20.0% |
| !!! | GAAAATTTCAATTTTTTTCC+GGG | + | chr1_1:4094848-4094867 | None:intergenic | 20.0% |
| !! | ACAGAATTATTACTTGAATA+TGG | - | chr1_1:4095158-4095177 | Msa0002270:CDS | 20.0% |
| !! | CAGAATTATTACTTGAATAT+GGG | - | chr1_1:4095159-4095178 | Msa0002270:CDS | 20.0% |
| !! | AGTTCTTTATAAAATAGATC+AGG | + | chr1_1:4095216-4095235 | None:intergenic | 20.0% |
| !! | TTAGTGATAGAAATCAATAT+TGG | - | chr1_1:4095763-4095782 | Msa0002270:intron | 20.0% |
| !! | TAGTGATAGAAATCAATATT+GGG | - | chr1_1:4095764-4095783 | Msa0002270:intron | 20.0% |
| !! | TTAGCAAATGATTTATGAAT+TGG | - | chr1_1:4095887-4095906 | Msa0002270:intron | 20.0% |
| !! | ATTAAATTGACCATTTATGT+GGG | + | chr1_1:4096111-4096130 | None:intergenic | 20.0% |
| !! | AATTAAATTGACCATTTATG+TGG | + | chr1_1:4096112-4096131 | None:intergenic | 20.0% |
| !! | ATGGTCAATTTAATTATTTG+GGG | - | chr1_1:4096117-4096136 | Msa0002270:intron | 20.0% |
| !! | AAATAAATTCATCCAGTTAT+GGG | + | chr1_1:4096771-4096790 | None:intergenic | 20.0% |
| !!! | ATTTGATTTCATATATTGGA+TGG | + | chr1_1:4097105-4097124 | None:intergenic | 20.0% |
| !! | TATACATAATATGCACAATT+TGG | + | chr1_1:4097717-4097736 | None:intergenic | 20.0% |
| !!! | TTGGATTAGGATATTTTTAG+GGG | + | chr1_1:4094741-4094760 | None:intergenic | 25.0% |
| !!! | GTTTGGATTAGGATATTTTT+AGG | + | chr1_1:4094743-4094762 | None:intergenic | 25.0% |
| ! | GATTTATTGAGTTATTAAGC+GGG | + | chr1_1:4094779-4094798 | None:intergenic | 25.0% |
| ! | GGATTTATTGAGTTATTAAG+CGG | + | chr1_1:4094780-4094799 | None:intergenic | 25.0% |
| !!! | AACTTAGCTTTGATATCTAT+AGG | - | chr1_1:4095232-4095251 | Msa0002270:CDS | 25.0% |
| ! | TTTAGCGTAGAATGATAAAA+TGG | - | chr1_1:4095312-4095331 | Msa0002270:intron | 25.0% |
| !!! | AATATTTTTGGGAATAGAGT+AGG | + | chr1_1:4095390-4095409 | None:intergenic | 25.0% |
| !! | CCTTGCACTTAAATATTTTT+GGG | + | chr1_1:4095401-4095420 | None:intergenic | 25.0% |
| ! | ATGACAAGTTTGACTATTTA+GGG | + | chr1_1:4095714-4095733 | None:intergenic | 25.0% |
| !! | AAATCAATATTGGGTTTTCA+AGG | - | chr1_1:4095773-4095792 | Msa0002270:intron | 25.0% |
| !! | AATCAATATTGGGTTTTCAA+GGG | - | chr1_1:4095774-4095793 | Msa0002270:intron | 25.0% |
| ! | TTTGCTTACATTTATCTTGA+TGG | - | chr1_1:4096394-4096413 | Msa0002270:intron | 25.0% |
| !!! | TCCTCTGAAATATAAAATGA+GGG | + | chr1_1:4096668-4096687 | None:intergenic | 25.0% |
| ! | GAAATAAATTCATCCAGTTA+TGG | + | chr1_1:4096772-4096791 | None:intergenic | 25.0% |
| !!! | ACAATTGTTGTTTTCTCATT+TGG | + | chr1_1:4096794-4096813 | None:intergenic | 25.0% |
| ! | AGAAAACATTGATATGGAAA+TGG | + | chr1_1:4097207-4097226 | None:intergenic | 25.0% |
| ! | GAGTATAGAAAACATTGATA+TGG | + | chr1_1:4097213-4097232 | None:intergenic | 25.0% |
| !! | AGAATTACAAATCGATCTTT+TGG | - | chr1_1:4097327-4097346 | Msa0002270:intron | 25.0% |
| !!! | AGATATTTTTCAAAGCTTTG+TGG | - | chr1_1:4097369-4097388 | Msa0002270:CDS | 25.0% |
| ! | AATGGTTTATATGTATCTGA+TGG | - | chr1_1:4097840-4097859 | Msa0002270:five_prime_UTR | 25.0% |
| ! | AAGTAGTACAAGACTTTTGT+GGG | + | chr1_1:4094676-4094695 | None:intergenic | 30.0% |
| ! | AAAGTAGTACAAGACTTTTG+TGG | + | chr1_1:4094677-4094696 | None:intergenic | 30.0% |
| !!! | TTGTTTGACCCTACTTTTTA+TGG | + | chr1_1:4094717-4094736 | None:intergenic | 30.0% |
| GAGATTATGTTGTGGATAAT+TGG | + | chr1_1:4094801-4094820 | None:intergenic | 30.0% | |
| CGGGAAAATTGAATTATGAA+GGG | + | chr1_1:4094829-4094848 | None:intergenic | 30.0% | |
| ! | CCTTCATAATTCAATTTTCC+CGG | - | chr1_1:4094827-4094846 | Msa0002270:three_prime_UTR | 30.0% |
| ! | ATTGCGTTCAATTTTGCATA+GGG | + | chr1_1:4094988-4095007 | None:intergenic | 30.0% |
| ! | AATTGCGTTCAATTTTGCAT+AGG | + | chr1_1:4094989-4095008 | None:intergenic | 30.0% |
| TATGCAAAATTGAACGCAAT+TGG | - | chr1_1:4094988-4095007 | Msa0002270:CDS | 30.0% | |
| ATGCAAAATTGAACGCAATT+GGG | - | chr1_1:4094989-4095008 | Msa0002270:CDS | 30.0% | |
| TTATGCTATACGAACTTTGA+GGG | - | chr1_1:4095182-4095201 | Msa0002270:CDS | 30.0% | |
| CCCAAAAATATTTAAGTGCA+AGG | - | chr1_1:4095398-4095417 | Msa0002270:intron | 30.0% | |
| ! | GCCTTGCACTTAAATATTTT+TGG | + | chr1_1:4095402-4095421 | None:intergenic | 30.0% |
| CATGACAAGTTTGACTATTT+AGG | + | chr1_1:4095715-4095734 | None:intergenic | 30.0% | |
| CTAAATAGTCAAACTTGTCA+TGG | - | chr1_1:4095713-4095732 | Msa0002270:intron | 30.0% | |
| ATGTAACGTGTTAGTCAAAA+TGG | - | chr1_1:4095926-4095945 | Msa0002270:intron | 30.0% | |
| TAATGACCAAAGTTAGTAGA+GGG | + | chr1_1:4095953-4095972 | None:intergenic | 30.0% | |
| CAACGACAACAATTAATAGA+GGG | + | chr1_1:4096039-4096058 | None:intergenic | 30.0% | |
| AATAACAAAGCAAGACTCAT+TGG | + | chr1_1:4096235-4096254 | None:intergenic | 30.0% | |
| GTGAGTAAGCTATAAGTAAA+GGG | + | chr1_1:4096322-4096341 | None:intergenic | 30.0% | |
| AGTGAGTAAGCTATAAGTAA+AGG | + | chr1_1:4096323-4096342 | None:intergenic | 30.0% | |
| AATACAGAAATGCAATGCTT+AGG | + | chr1_1:4096530-4096549 | None:intergenic | 30.0% | |
| TTCTGTATTCAGGAAGAATT+TGG | - | chr1_1:4096541-4096560 | Msa0002270:intron | 30.0% | |
| ATACTAGCCAAAGTAATAAG+AGG | - | chr1_1:4096589-4096608 | Msa0002270:intron | 30.0% | |
| !! | GACCTGTTACTCTTTTAATT+GGG | - | chr1_1:4096611-4096630 | Msa0002270:intron | 30.0% |
| AACCCAATTAAAAGAGTAAC+AGG | + | chr1_1:4096616-4096635 | None:intergenic | 30.0% | |
| !! | CCTCTGAAATATAAAATGAG+GGG | + | chr1_1:4096667-4096686 | None:intergenic | 30.0% |
| !! | CTCCTCTGAAATATAAAATG+AGG | + | chr1_1:4096669-4096688 | None:intergenic | 30.0% |
| CAAAATCATATACTGTCCAT+TGG | - | chr1_1:4096692-4096711 | Msa0002270:intron | 30.0% | |
| ATAGAGATTTGAATGCAAAG+AGG | - | chr1_1:4096916-4096935 | Msa0002270:intron | 30.0% | |
| ATTTCATATATTGGATGGAG+TGG | + | chr1_1:4097100-4097119 | None:intergenic | 30.0% | |
| !! | AATATGATAGGTTGGTTACT+TGG | - | chr1_1:4097148-4097167 | Msa0002270:intron | 30.0% |
| ! | ACATCTCTTTTGTGTTTTTC+AGG | - | chr1_1:4097258-4097277 | Msa0002270:intron | 30.0% |
| ! | CATCTCTTTTGTGTTTTTCA+GGG | - | chr1_1:4097259-4097278 | Msa0002270:intron | 30.0% |
| ! | CTTTGAAAAATATCTTGCCA+TGG | + | chr1_1:4097364-4097383 | None:intergenic | 30.0% |
| TTTGTCAAGTTTATACTCAG+AGG | + | chr1_1:4097504-4097523 | None:intergenic | 30.0% | |
| GAGTATAAACTTGACAAACA+AGG | - | chr1_1:4097506-4097525 | Msa0002270:CDS | 30.0% | |
| ! | GAAGAATTGATTCAATCTCT+TGG | - | chr1_1:4097599-4097618 | Msa0002270:CDS | 30.0% |
| GAAGATATTTCGAAGTAAGT+TGG | + | chr1_1:4097644-4097663 | None:intergenic | 30.0% | |
| ! | TCATGCTCTTCAAAAAGTTT+TGG | - | chr1_1:4097690-4097709 | Msa0002270:exon | 30.0% |
| ! | AGAAAAAGACATTTTCTCAG+AGG | + | chr1_1:4097779-4097798 | None:intergenic | 30.0% |
| ! | AGAAAAAGACATTTTCTCAG+AGG | + | chr1_1:4097779-4097798 | None:intergenic | 30.0% |
| ! | TGTCTTTTTCTGTAGCTTAA+TGG | - | chr1_1:4097822-4097841 | Msa0002270:five_prime_UTR | 30.0% |
| ! | AGTAGTACAAGACTTTTGTG+GGG | + | chr1_1:4094675-4094694 | None:intergenic | 35.0% |
| AGTTATTAAGCGGGAAAATG+TGG | + | chr1_1:4094770-4094789 | None:intergenic | 35.0% | |
| GGGAAAATGAGATTATGTTG+TGG | + | chr1_1:4094809-4094828 | None:intergenic | 35.0% | |
| CCGGGAAAATTGAATTATGA+AGG | + | chr1_1:4094830-4094849 | None:intergenic | 35.0% | |
| ! | ATTTTCGCGAATTAGGGATA+GGG | + | chr1_1:4094951-4094970 | None:intergenic | 35.0% |
| ! | AATTTTCGCGAATTAGGGAT+AGG | + | chr1_1:4094952-4094971 | None:intergenic | 35.0% |
| ! | TGTGGAATTTTCGCGAATTA+GGG | + | chr1_1:4094957-4094976 | None:intergenic | 35.0% |
| ! | TTGTGGAATTTTCGCGAATT+AGG | + | chr1_1:4094958-4094977 | None:intergenic | 35.0% |
| ! | TTGCATAGGGTTTGAAATTG+TGG | + | chr1_1:4094975-4094994 | None:intergenic | 35.0% |
| GAAGATTTCATGTGAAGTGA+AGG | - | chr1_1:4095026-4095045 | Msa0002270:CDS | 35.0% | |
| ! | ATGTGAAGTGAAGGATTTTG+CGG | - | chr1_1:4095035-4095054 | Msa0002270:CDS | 35.0% |
| !!! | GATTTTGCGGTTTTGGAATT+GGG | - | chr1_1:4095048-4095067 | Msa0002270:CDS | 35.0% |
| !!! | TTTTGGAATTGGGTTTGGAT+CGG | - | chr1_1:4095058-4095077 | Msa0002270:CDS | 35.0% |
| ! | GAAGCAGTATGGTCAATTTT+CGG | - | chr1_1:4095086-4095105 | Msa0002270:CDS | 35.0% |
| GTTATGCTATACGAACTTTG+AGG | - | chr1_1:4095181-4095200 | Msa0002270:CDS | 35.0% | |
| ATAGTCAAACTTGTCATGGA+AGG | - | chr1_1:4095717-4095736 | Msa0002270:intron | 35.0% | |
| GACTAACACGTTACATTTCA+AGG | + | chr1_1:4095922-4095941 | None:intergenic | 35.0% | |
| AATGACCAAAGTTAGTAGAG+GGG | + | chr1_1:4095952-4095971 | None:intergenic | 35.0% | |
| CTAATGACCAAAGTTAGTAG+AGG | + | chr1_1:4095954-4095973 | None:intergenic | 35.0% | |
| TGACGCGTTAAATGTTCATT+TGG | - | chr1_1:4095985-4096004 | Msa0002270:intron | 35.0% | |
| CCAACGACAACAATTAATAG+AGG | + | chr1_1:4096040-4096059 | None:intergenic | 35.0% | |
| CCTCTATTAATTGTTGTCGT+TGG | - | chr1_1:4096037-4096056 | Msa0002270:intron | 35.0% | |
| ATTTGGGGAACTAATTGTGT+TGG | - | chr1_1:4096132-4096151 | Msa0002270:intron | 35.0% | |
| TTATCAATTAGCATGCCACA+TGG | - | chr1_1:4096173-4096192 | Msa0002270:intron | 35.0% | |
| TATCAATTAGCATGCCACAT+GGG | - | chr1_1:4096174-4096193 | Msa0002270:intron | 35.0% | |
| ! | ACCTATATTGGCTATCATGA+TGG | - | chr1_1:4096352-4096371 | Msa0002270:intron | 35.0% |
| TCCATCATGATAGCCAATAT+AGG | + | chr1_1:4096356-4096375 | None:intergenic | 35.0% | |
| GTCACCTTATATTATGCCAA+AGG | - | chr1_1:4096469-4096488 | Msa0002270:intron | 35.0% | |
| ACGACCTTTGGCATAATATA+AGG | + | chr1_1:4096476-4096495 | None:intergenic | 35.0% | |
| TAAACAAACACAACGACCTT+TGG | + | chr1_1:4096488-4096507 | None:intergenic | 35.0% | |
| AGCATTGCATTTCTGTATTC+AGG | - | chr1_1:4096531-4096550 | Msa0002270:intron | 35.0% | |
| AATTTGGCTAGAGTGTATTG+AGG | - | chr1_1:4096557-4096576 | Msa0002270:intron | 35.0% | |
| AACAGGTCCTCTTATTACTT+TGG | + | chr1_1:4096599-4096618 | None:intergenic | 35.0% | |
| ! | GGACCTGTTACTCTTTTAAT+TGG | - | chr1_1:4096610-4096629 | Msa0002270:intron | 35.0% |
| ! | CCCCTCATTTTATATTTCAG+AGG | - | chr1_1:4096664-4096683 | Msa0002270:intron | 35.0% |
| AATTCATCCAGTTATGGGAT+GGG | + | chr1_1:4096766-4096785 | None:intergenic | 35.0% | |
| AAATTCATCCAGTTATGGGA+TGG | + | chr1_1:4096767-4096786 | None:intergenic | 35.0% | |
| TCATATTCCAAGCAAGTAGT+GGG | + | chr1_1:4097135-4097154 | None:intergenic | 35.0% | |
| ATCATATTCCAAGCAAGTAG+TGG | + | chr1_1:4097136-4097155 | None:intergenic | 35.0% | |
| CTACTTGCTTGGAATATGAT+AGG | - | chr1_1:4097136-4097155 | Msa0002270:intron | 35.0% | |
| TTGCTTGGAATATGATAGGT+TGG | - | chr1_1:4097140-4097159 | Msa0002270:intron | 35.0% | |
| CACAAAAGAGATGTTATAGC+AGG | + | chr1_1:4097252-4097271 | None:intergenic | 35.0% | |
| CAGGGATGATATTGTATTGA+AGG | - | chr1_1:4097277-4097296 | Msa0002270:intron | 35.0% | |
| GATCCTCTGAATACGTTTAT+GGG | - | chr1_1:4097299-4097318 | Msa0002270:intron | 35.0% | |
| ATACCCATAAACGTATTCAG+AGG | + | chr1_1:4097305-4097324 | None:intergenic | 35.0% | |
| ACCATAATGACATTCTCAAC+AGG | + | chr1_1:4097419-4097438 | None:intergenic | 35.0% | |
| !! | TTGCTTTTAACAAACCTCCT+AGG | - | chr1_1:4097558-4097577 | Msa0002270:CDS | 35.0% |
| ACTGACATCACTTTAAACCT+AGG | + | chr1_1:4097578-4097597 | None:intergenic | 35.0% | |
| ! | TAGGTTTAAAGTGATGTCAG+TGG | - | chr1_1:4097577-4097596 | Msa0002270:CDS | 35.0% |
| ! | GTAGTACAAGACTTTTGTGG+GGG | + | chr1_1:4094674-4094693 | None:intergenic | 40.0% |
| ! | AATGTGGATGGGTTTGGATT+AGG | + | chr1_1:4094754-4094773 | None:intergenic | 40.0% |
| TTAAGCGGGAAAATGTGGAT+GGG | + | chr1_1:4094765-4094784 | None:intergenic | 40.0% | |
| ATTAAGCGGGAAAATGTGGA+TGG | + | chr1_1:4094766-4094785 | None:intergenic | 40.0% | |
| !! | TAGGGTTTTGTGCGAATTGA+GGG | + | chr1_1:4094933-4094952 | None:intergenic | 40.0% |
| !! | ATAGGGTTTTGTGCGAATTG+AGG | + | chr1_1:4094934-4094953 | None:intergenic | 40.0% |
| ! | AGTGAAGGATTTTGCGGTTT+TGG | - | chr1_1:4095041-4095060 | Msa0002270:CDS | 40.0% |
| !!! | GGATTTTGCGGTTTTGGAAT+TGG | - | chr1_1:4095047-4095066 | Msa0002270:CDS | 40.0% |
| ! | GTATGGTCAATTTTCGGTTC+CGG | - | chr1_1:4095092-4095111 | Msa0002270:CDS | 40.0% |
| !! | TAATAGAGGGAGCATTAACG+TGG | + | chr1_1:4096026-4096045 | None:intergenic | 40.0% |
| CGCGACACATTAAATGAACA+CGG | - | chr1_1:4096069-4096088 | Msa0002270:intron | 40.0% | |
| ATCAATTAGCATGCCACATG+GGG | - | chr1_1:4096175-4096194 | Msa0002270:intron | 40.0% | |
| ! | TACTGTCCATTGGTTGAGTT+AGG | - | chr1_1:4096702-4096721 | Msa0002270:intron | 40.0% |
| GGTTGTTAGAAGTTAGGAGT+AGG | - | chr1_1:4096730-4096749 | Msa0002270:intron | 40.0% | |
| ! | TTTGAGTTTATTGCAGCAGC+AGG | - | chr1_1:4096813-4096832 | Msa0002270:intron | 40.0% |
| TTGAGTTTATTGCAGCAGCA+GGG | - | chr1_1:4096814-4096833 | Msa0002270:intron | 40.0% | |
| ! | AAACAGCATTGAGCATGACA+AGG | + | chr1_1:4096965-4096984 | None:intergenic | 40.0% |
| ! | CGATTTAGAACCCACGTATT+TGG | - | chr1_1:4096989-4097008 | Msa0002270:intron | 40.0% |
| TTAGAACCCACGTATTTGGA+AGG | - | chr1_1:4096993-4097012 | Msa0002270:intron | 40.0% | |
| TAGAACCCACGTATTTGGAA+GGG | - | chr1_1:4096994-4097013 | Msa0002270:intron | 40.0% | |
| GTATTTGGAAGGGATCAGTA+GGG | - | chr1_1:4097004-4097023 | Msa0002270:intron | 40.0% | |
| TAGGGCCAAAGACATTCTTA+GGG | - | chr1_1:4097022-4097041 | Msa0002270:intron | 40.0% | |
| AAAGGCCCTAAGAATGTCTT+TGG | + | chr1_1:4097030-4097049 | None:intergenic | 40.0% | |
| ATTCTTAGGGCCTTTGTCTT+TGG | - | chr1_1:4097035-4097054 | Msa0002270:intron | 40.0% | |
| ACAAGCATGTCCAAAGACAA+AGG | + | chr1_1:4097048-4097067 | None:intergenic | 40.0% | |
| ATATTGGATGGAGTGGAAAG+AGG | + | chr1_1:4097093-4097112 | None:intergenic | 40.0% | |
| ATGTTTACCCACTACTTGCT+TGG | - | chr1_1:4097125-4097144 | Msa0002270:intron | 40.0% | |
| GGATCCTCTGAATACGTTTA+TGG | - | chr1_1:4097298-4097317 | Msa0002270:intron | 40.0% | |
| !!! | TTTTGGAACCTTCGATTCCA+TGG | - | chr1_1:4097344-4097363 | Msa0002270:CDS | 40.0% |
| ATATCTTGCCATGGAATCGA+AGG | + | chr1_1:4097355-4097374 | None:intergenic | 40.0% | |
| GGATAGACATAAACAGTGTG+TGG | - | chr1_1:4097390-4097409 | Msa0002270:CDS | 40.0% | |
| GCCTGTTGAGAATGTCATTA+TGG | - | chr1_1:4097415-4097434 | Msa0002270:CDS | 40.0% | |
| AGAATGTCATTATGGTTCGC+TGG | - | chr1_1:4097423-4097442 | Msa0002270:CDS | 40.0% | |
| AAGGCAAGATTTACGAGCAT+CGG | - | chr1_1:4097525-4097544 | Msa0002270:CDS | 40.0% | |
| GACATCACTTTAAACCTAGG+AGG | + | chr1_1:4097575-4097594 | None:intergenic | 40.0% | |
| !! | TTTCGAAGTAAGTTGGTCCT+GGG | + | chr1_1:4097637-4097656 | None:intergenic | 40.0% |
| !! | ATTTCGAAGTAAGTTGGTCC+TGG | + | chr1_1:4097638-4097657 | None:intergenic | 40.0% |
| ! | TGGGGGAAGTGTGGATAAAA+TGG | + | chr1_1:4094657-4094676 | None:intergenic | 45.0% |
| TGAGGGGTAACGTGAATTTC+CGG | + | chr1_1:4094916-4094935 | None:intergenic | 45.0% | |
| !! | AGGGTTTTGTGCGAATTGAG+GGG | + | chr1_1:4094932-4094951 | None:intergenic | 45.0% |
| ACGCAATTGGGTCAAAGAAC+AGG | - | chr1_1:4095001-4095020 | Msa0002270:CDS | 45.0% | |
| CGCAATTGGGTCAAAGAACA+GGG | - | chr1_1:4095002-4095021 | Msa0002270:CDS | 45.0% | |
| !!! | TGCGGTTTTGGAATTGGGTT+TGG | - | chr1_1:4095053-4095072 | Msa0002270:CDS | 45.0% |
| GATTTCGAACCACTCTTCAC+CGG | + | chr1_1:4095114-4095133 | None:intergenic | 45.0% | |
| TGGTTCGAAATCGAGCAAAG+AGG | - | chr1_1:4095122-4095141 | Msa0002270:CDS | 45.0% | |
| ! | TGCTATACGAACTTTGAGGG+AGG | - | chr1_1:4095185-4095204 | Msa0002270:CDS | 45.0% |
| AATGGCCCCTCTACTAACTT+TGG | - | chr1_1:4095944-4095963 | Msa0002270:intron | 45.0% | |
| ! | TGTTCATTTGGCCTTCCATG+TGG | - | chr1_1:4095997-4096016 | Msa0002270:intron | 45.0% |
| TAACGTGGTATCCACATGGA+AGG | + | chr1_1:4096011-4096030 | None:intergenic | 45.0% | |
| GCATTAACGTGGTATCCACA+TGG | + | chr1_1:4096015-4096034 | None:intergenic | 45.0% | |
| CCATTTATGTGGGAACCCAA+CGG | + | chr1_1:4096101-4096120 | None:intergenic | 45.0% | |
| ! | CCATTGGTTGAGTTAGGCAA+CGG | - | chr1_1:4096708-4096727 | Msa0002270:intron | 45.0% |
| ! | CATTGGTTGAGTTAGGCAAC+GGG | - | chr1_1:4096709-4096728 | Msa0002270:intron | 45.0% |
| !! | GCAACGGGTTGTTAGAAGTT+AGG | - | chr1_1:4096724-4096743 | Msa0002270:intron | 45.0% |
| AACTGTTCCCATCCCATAAC+TGG | - | chr1_1:4096756-4096775 | Msa0002270:intron | 45.0% | |
| TTTATTGCAGCAGCAGGGTA+GGG | - | chr1_1:4096819-4096838 | Msa0002270:intron | 45.0% | |
| AGAGAGAGGATGGGGAATTA+TGG | - | chr1_1:4096852-4096871 | Msa0002270:intron | 45.0% | |
| GAGAGAGGATGGGGAATTAT+GGG | - | chr1_1:4096853-4096872 | Msa0002270:intron | 45.0% | |
| AGAGAGGATGGGGAATTATG+GGG | - | chr1_1:4096854-4096873 | Msa0002270:intron | 45.0% | |
| CTGATCCCTTCCAAATACGT+GGG | + | chr1_1:4097002-4097021 | None:intergenic | 45.0% | |
| ACTGATCCCTTCCAAATACG+TGG | + | chr1_1:4097003-4097022 | None:intergenic | 45.0% | |
| CGTATTTGGAAGGGATCAGT+AGG | - | chr1_1:4097003-4097022 | Msa0002270:intron | 45.0% | |
| GTAGGGCCAAAGACATTCTT+AGG | - | chr1_1:4097021-4097040 | Msa0002270:intron | 45.0% | |
| TGTCATTATGGTTCGCTGGA+CGG | - | chr1_1:4097427-4097446 | Msa0002270:CDS | 45.0% | |
| AGGCAAGATTTACGAGCATC+GGG | - | chr1_1:4097526-4097545 | Msa0002270:CDS | 45.0% | |
| !! | TTCGAAGTAAGTTGGTCCTG+GGG | + | chr1_1:4097636-4097655 | None:intergenic | 45.0% |
| TCAACTAGTTACCGCAGATC+AGG | + | chr1_1:4097869-4097888 | None:intergenic | 45.0% | |
| ! | AGACTTTTGTGGGGGAAGTG+TGG | + | chr1_1:4094666-4094685 | None:intergenic | 50.0% |
| ! | CGGGAAAATGTGGATGGGTT+TGG | + | chr1_1:4094760-4094779 | None:intergenic | 50.0% |
| GACTCTTCTAGTACACTCCC+CGG | - | chr1_1:4094894-4094913 | Msa0002270:exon | 50.0% | |
| AGGGGTAACGTGAATTTCCG+GGG | + | chr1_1:4094914-4094933 | None:intergenic | 50.0% | |
| GAGGGGTAACGTGAATTTCC+GGG | + | chr1_1:4094915-4094934 | None:intergenic | 50.0% | |
| GATCGGAACGTGAAGCAGTA+TGG | - | chr1_1:4095075-4095094 | Msa0002270:CDS | 50.0% | |
| ! | TTTTCGGTTCCGGTGAAGAG+TGG | - | chr1_1:4095102-4095121 | Msa0002270:CDS | 50.0% |
| TTATGTGGGAACCCAACGGA+AGG | + | chr1_1:4096097-4096116 | None:intergenic | 50.0% | |
| CCGTTGGGTTCCCACATAAA+TGG | - | chr1_1:4096098-4096117 | Msa0002270:intron | 50.0% | |
| !! | TGCCACATGGGGTATTGAAG+TGG | - | chr1_1:4096186-4096205 | Msa0002270:intron | 50.0% |
| !! | GCCACATGGGGTATTGAAGT+GGG | - | chr1_1:4096187-4096206 | Msa0002270:intron | 50.0% |
| CCGTTGCCTAACTCAACCAA+TGG | + | chr1_1:4096711-4096730 | None:intergenic | 50.0% | |
| GTTTATTGCAGCAGCAGGGT+AGG | - | chr1_1:4096818-4096837 | Msa0002270:intron | 50.0% | |
| AGGGGTAGAAAGAGAGAGGA+TGG | - | chr1_1:4096842-4096861 | Msa0002270:intron | 50.0% | |
| GGGGTAGAAAGAGAGAGGAT+GGG | - | chr1_1:4096843-4096862 | Msa0002270:intron | 50.0% | |
| GGGTAGAAAGAGAGAGGATG+GGG | - | chr1_1:4096844-4096863 | Msa0002270:intron | 50.0% | |
| GAATGCAAAGAGGATCAGCG+AGG | - | chr1_1:4096926-4096945 | Msa0002270:intron | 50.0% | |
| !!! | TGCTTGTTTTGCAGAGCCTC+AGG | - | chr1_1:4097061-4097080 | Msa0002270:intron | 50.0% |
| GATGGAGTGGAAAGAGGCTT+AGG | + | chr1_1:4097087-4097106 | None:intergenic | 50.0% | |
| AGGTTCCATCAAACCTACCG+CGG | + | chr1_1:4097484-4097503 | None:intergenic | 50.0% | |
| ! | TCTGATGGTGTCCTGATCTG+CGG | - | chr1_1:4097855-4097874 | Msa0002270:five_prime_UTR | 50.0% |
| ATGAACACGGAGCCTTCCGT+TGG | - | chr1_1:4096082-4096101 | Msa0002270:intron | 55.0% | |
| TGAACACGGAGCCTTCCGTT+GGG | - | chr1_1:4096083-4096102 | Msa0002270:intron | 55.0% | |
| GCCCACTTCAATACCCCATG+TGG | + | chr1_1:4096191-4096210 | None:intergenic | 55.0% | |
| AGGGAGGGGTAGAAAGAGAG+AGG | - | chr1_1:4096838-4096857 | Msa0002270:intron | 55.0% | |
| !! | AGGATCAGCGAGGCATTGCA+TGG | - | chr1_1:4096936-4096955 | Msa0002270:intron | 55.0% |
| TGGAAAGAGGCTTAGGCCTG+AGG | + | chr1_1:4097080-4097099 | None:intergenic | 55.0% | |
| ATGGTTCGCTGGACGGTTCA+CGG | - | chr1_1:4097434-4097453 | Msa0002270:CDS | 55.0% | |
| GGCTTTCCCATGGAACTCGT+GGG | + | chr1_1:4097463-4097482 | None:intergenic | 55.0% | |
| GAAAGCCGCGGTAGGTTTGA+TGG | - | chr1_1:4097476-4097495 | Msa0002270:CDS | 55.0% | |
| !! | TAAGTTGGTCCTGGGGTCTG+CGG | + | chr1_1:4097629-4097648 | None:intergenic | 55.0% |
| ATTGCAGCAGCAGGGTAGGG+AGG | - | chr1_1:4096822-4096841 | Msa0002270:intron | 60.0% | |
| TTGCAGCAGCAGGGTAGGGA+GGG | - | chr1_1:4096823-4096842 | Msa0002270:intron | 60.0% | |
| TGGTTCGCTGGACGGTTCAC+GGG | - | chr1_1:4097435-4097454 | Msa0002270:CDS | 60.0% | |
| ACGGGATCCCACGAGTTCCA+TGG | - | chr1_1:4097453-4097472 | Msa0002270:CDS | 60.0% | |
| CGGGATCCCACGAGTTCCAT+GGG | - | chr1_1:4097454-4097473 | Msa0002270:CDS | 60.0% | |
| CGGCTTTCCCATGGAACTCG+TGG | + | chr1_1:4097464-4097483 | None:intergenic | 60.0% | |
| CGAGTTCCATGGGAAAGCCG+CGG | - | chr1_1:4097464-4097483 | Msa0002270:CDS | 60.0% | |
| TTCCATGGGAAAGCCGCGGT+AGG | - | chr1_1:4097468-4097487 | Msa0002270:CDS | 60.0% | |
| AACCTACCGCGGCTTTCCCA+TGG | + | chr1_1:4097473-4097492 | None:intergenic | 60.0% | |
| TGCAGCAGCAGGGTAGGGAG+GGG | - | chr1_1:4096824-4096843 | Msa0002270:intron | 65.0% | |
| CTTGGCTGTCCGCAGACCCC+AGG | - | chr1_1:4097617-4097636 | Msa0002270:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4094647 | 4097942 | 4094647 | ID=Msa0002270;Name=Msa0002270 |
| chr1_1 | mRNA | 4094647 | 4097942 | 4094647 | ID=Msa0002270-mRNA-1;Parent=Msa0002270;Name=Msa0002270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=245|1|1|1|1|1|2|260|254 |
| chr1_1 | exon | 4094647 | 4095309 | 4094647 | ID=Msa0002270-mRNA-1:exon:1257;Parent=Msa0002270-mRNA-1 |
| chr1_1 | exon | 4097336 | 4097942 | 4097336 | ID=Msa0002270-mRNA-1:exon:1256;Parent=Msa0002270-mRNA-1 |
| chr1_1 | five_prime_UTR | 4097698 | 4097942 | 4097698 | ID=Msa0002270-mRNA-1:five_prime_utr;Parent=Msa0002270-mRNA-1 |
| chr1_1 | CDS | 4097336 | 4097697 | 4097336 | ID=Msa0002270-mRNA-1:cds;Parent=Msa0002270-mRNA-1 |
| chr1_1 | CDS | 4094907 | 4095309 | 4094907 | ID=Msa0002270-mRNA-1:cds;Parent=Msa0002270-mRNA-1 |
| chr1_1 | three_prime_UTR | 4094647 | 4094906 | 4094647 | ID=Msa0002270-mRNA-1:three_prime_utr;Parent=Msa0002270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
