Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002400 | sp|Q8RYD1|REM16_ARATH | 31.805 | 349 | 190 | 9 | 8 | 353 | 11 | 314 | 1.89e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0002400 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002400 | Msa0051290 | 0.978384 | 1.032426e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002400 | MtrunA17_Chr1g0154191 | 93.011 | 372 | 26 | 0 | 1 | 372 | 1 | 372 | 0.0 | 719 |
| Msa0002400 | MtrunA17_Chr1g0154171 | 72.654 | 373 | 78 | 5 | 5 | 371 | 6 | 360 | 0.0 | 517 |
| Msa0002400 | MtrunA17_Chr1g0154161 | 64.130 | 368 | 77 | 5 | 5 | 372 | 13 | 325 | 1.26e-163 | 461 |
| Msa0002400 | MtrunA17_Chr1g0154211 | 54.926 | 406 | 130 | 5 | 2 | 366 | 3 | 396 | 1.81e-148 | 425 |
| Msa0002400 | MtrunA17_Chr1g0154151 | 64.392 | 337 | 79 | 7 | 37 | 364 | 19 | 323 | 2.62e-142 | 407 |
| Msa0002400 | MtrunA17_Chr1g0154101 | 50.109 | 457 | 118 | 6 | 6 | 365 | 168 | 611 | 5.30e-138 | 413 |
| Msa0002400 | MtrunA17_Chr1g0154101 | 77.914 | 163 | 36 | 0 | 3 | 165 | 6 | 168 | 3.66e-82 | 267 |
| Msa0002400 | MtrunA17_Chr1g0154101 | 38.218 | 348 | 177 | 7 | 36 | 371 | 521 | 842 | 1.19e-57 | 201 |
| Msa0002400 | MtrunA17_Chr1g0154111 | 57.219 | 374 | 132 | 7 | 4 | 363 | 8 | 367 | 9.61e-137 | 402 |
| Msa0002400 | MtrunA17_Chr1g0154111 | 55.714 | 210 | 71 | 6 | 37 | 226 | 368 | 575 | 5.21e-56 | 192 |
| Msa0002400 | MtrunA17_Chr1g0154131 | 56.667 | 360 | 106 | 7 | 6 | 364 | 168 | 478 | 1.34e-130 | 382 |
| Msa0002400 | MtrunA17_Chr1g0154131 | 69.643 | 168 | 50 | 1 | 4 | 171 | 8 | 174 | 1.74e-74 | 238 |
| Msa0002400 | MtrunA17_Chr1g0154071 | 52.304 | 369 | 136 | 6 | 10 | 360 | 145 | 491 | 3.87e-119 | 354 |
| Msa0002400 | MtrunA17_Chr1g0154071 | 77.941 | 136 | 29 | 1 | 2 | 137 | 8 | 142 | 4.82e-65 | 214 |
| Msa0002400 | MtrunA17_Chr1g0154241 | 62.452 | 261 | 54 | 6 | 1 | 222 | 1 | 256 | 1.40e-96 | 288 |
| Msa0002400 | MtrunA17_Chr1g0154251 | 43.142 | 401 | 151 | 12 | 3 | 341 | 8 | 393 | 7.31e-89 | 276 |
| Msa0002400 | MtrunA17_Chr1g0154041 | 35.519 | 366 | 195 | 10 | 21 | 365 | 15 | 360 | 2.04e-60 | 204 |
| Msa0002400 | MtrunA17_Chr1g0154041 | 40.299 | 335 | 151 | 10 | 56 | 372 | 293 | 596 | 4.35e-59 | 201 |
| Msa0002400 | MtrunA17_Chr1g0154121 | 43.119 | 109 | 44 | 2 | 273 | 372 | 2 | 101 | 3.44e-22 | 90.1 |
| Msa0002400 | MtrunA17_Chr1g0208771 | 25.369 | 339 | 202 | 12 | 26 | 358 | 1 | 294 | 1.37e-21 | 95.9 |
| Msa0002400 | MtrunA17_Chr7g0233561 | 24.198 | 343 | 202 | 9 | 20 | 352 | 16 | 310 | 1.40e-21 | 94.4 |
| Msa0002400 | MtrunA17_Chr3g0131891 | 25.434 | 346 | 187 | 9 | 16 | 352 | 18 | 301 | 8.61e-21 | 92.0 |
| Msa0002400 | MtrunA17_Chr7g0233531 | 25.155 | 322 | 172 | 8 | 38 | 352 | 2 | 261 | 1.23e-18 | 85.1 |
| Msa0002400 | MtrunA17_Chr8g0390841 | 23.229 | 353 | 213 | 12 | 15 | 358 | 32 | 335 | 1.19e-15 | 78.2 |
| Msa0002400 | MtrunA17_Chr3g0077411 | 22.936 | 327 | 171 | 10 | 20 | 345 | 260 | 506 | 5.08e-14 | 73.2 |
| Msa0002400 | MtrunA17_Chr7g0233571 | 34.694 | 98 | 64 | 0 | 15 | 112 | 3 | 100 | 1.05e-13 | 69.7 |
| Msa0002400 | MtrunA17_Chr4g0067431 | 22.561 | 328 | 206 | 10 | 20 | 342 | 13 | 297 | 7.54e-12 | 65.9 |
| Msa0002400 | MtrunA17_Chr3g0077461 | 29.167 | 144 | 98 | 1 | 21 | 164 | 236 | 375 | 2.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002400 | AT4G33280.1 | 31.805 | 349 | 190 | 9 | 8 | 353 | 11 | 314 | 1.92e-47 | 164 |
| Msa0002400 | AT4G33280.2 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 5.60e-43 | 151 |
| Msa0002400 | AT4G33280.3 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 5.29e-42 | 151 |
| Msa0002400 | AT3G18990.2 | 25.073 | 343 | 227 | 11 | 22 | 350 | 6 | 332 | 1.34e-19 | 89.7 |
| Msa0002400 | AT3G18990.1 | 25.073 | 343 | 227 | 11 | 22 | 350 | 6 | 332 | 1.34e-19 | 89.4 |
| Msa0002400 | AT4G34400.2 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 1.25e-17 | 84.0 |
| Msa0002400 | AT4G34400.1 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 1.25e-17 | 84.0 |
| Msa0002400 | AT5G66980.1 | 24.242 | 330 | 179 | 15 | 34 | 343 | 21 | 299 | 1.68e-14 | 74.3 |
| Msa0002400 | AT5G60130.5 | 40.659 | 91 | 49 | 2 | 34 | 119 | 25 | 115 | 9.91e-14 | 70.9 |
| Msa0002400 | AT5G60130.3 | 41.573 | 89 | 47 | 2 | 36 | 119 | 1 | 89 | 1.27e-13 | 71.2 |
| Msa0002400 | AT5G60130.2 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.75e-13 | 70.9 |
| Msa0002400 | AT5G60130.1 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.86e-13 | 70.9 |
| Msa0002400 | AT5G60130.4 | 41.573 | 89 | 47 | 2 | 36 | 119 | 24 | 112 | 1.91e-13 | 70.9 |
| Msa0002400 | AT3G06220.1 | 32.222 | 90 | 59 | 1 | 22 | 111 | 11 | 98 | 2.26e-13 | 68.2 |
| Msa0002400 | AT3G06160.1 | 34.444 | 90 | 57 | 1 | 22 | 111 | 26 | 113 | 3.07e-12 | 67.4 |
| Msa0002400 | AT3G06160.5 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0002400 | AT3G06160.4 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0002400 | AT3G06160.3 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0002400 | AT3G06160.2 | 34.444 | 90 | 57 | 1 | 22 | 111 | 70 | 157 | 4.62e-12 | 67.0 |
| Msa0002400 | AT1G49475.1 | 36.264 | 91 | 57 | 1 | 22 | 112 | 34 | 123 | 1.79e-11 | 63.2 |
| Msa0002400 | AT3G53310.1 | 36.709 | 79 | 50 | 0 | 34 | 112 | 22 | 100 | 3.09e-11 | 63.9 |
| Msa0002400 | AT3G18960.2 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 6.65e-11 | 61.6 |
Find 96 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGATAATAACATTAAATT+TGG | 0.154377 | 1_1:-4291711 | Msa0002400:CDS |
| CACAGACTTGTTTGTGTCCT+TGG | 0.171497 | 1_1:+4292919 | None:intergenic |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_1:+4293173 | None:intergenic |
| ACCTGAGTGTTCTTTGTTAC+AGG | 0.205520 | 1_1:+4292691 | None:intergenic |
| GTGATGCAAGTTCATATATC+TGG | 0.223627 | 1_1:-4291654 | Msa0002400:CDS |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_1:-4293187 | Msa0002400:CDS |
| CGGTGGTGCTATGAAGAAAT+TGG | 0.266641 | 1_1:+4294241 | None:intergenic |
| CAAGAACGTTAGCAGGTAAA+TGG | 0.276363 | 1_1:+4291561 | None:intergenic |
| GTGATGATGATACAGCTAAT+TGG | 0.290978 | 1_1:+4291434 | None:intergenic |
| CTTGGGAGGAAGAGATTTAC+TGG | 0.300092 | 1_1:-4294290 | Msa0002400:CDS |
| GAAGGTCTTGACCAGCAAAA+TGG | 0.302980 | 1_1:-4291621 | Msa0002400:CDS |
| TTATGAGAAGTAGCTGCTTT+TGG | 0.305223 | 1_1:+4292734 | None:intergenic |
| ACAAGCGTAAATTTATTAAC+AGG | 0.306921 | 1_1:+4292767 | None:intergenic |
| ACCATTCTCCCTTTAGCATA+TGG | 0.319123 | 1_1:+4291801 | None:intergenic |
| TGAAATGGATGAACTGAAAA+TGG | 0.343707 | 1_1:+4294265 | None:intergenic |
| TATCAATGTTTCACGTACTA+TGG | 0.347323 | 1_1:-4292073 | Msa0002400:intron |
| AATCTCTTCCTCCCAAGATT+TGG | 0.351389 | 1_1:+4294296 | None:intergenic |
| AATTGGGAGGGAGCTGCAAC+AGG | 0.351758 | 1_1:+4292812 | None:intergenic |
| ACTGGTCTCCGTTTAGCATA+TGG | 0.355660 | 1_1:+4291768 | None:intergenic |
| TACAAGTTGTTGTTGAAAAT+CGG | 0.364741 | 1_1:+4294221 | None:intergenic |
| CTCTCTACTTCTCTTTGAAA+TGG | 0.367474 | 1_1:-4294328 | Msa0002400:exon |
| CGCCATTGTACTTGAAGAAA+AGG | 0.367579 | 1_1:+4293053 | None:intergenic |
| TCTTCCTCGTGAACTGTTGA+AGG | 0.369672 | 1_1:-4294400 | Msa0002400:five_prime_UTR |
| GCATCAGCCATGCACTTCTC+AGG | 0.387871 | 1_1:+4292851 | None:intergenic |
| TTTCTATTCATATATATAAG+AGG | 0.394481 | 1_1:+4294461 | None:intergenic |
| TGTGCAGCAGAGAAATGATA+TGG | 0.401325 | 1_1:+4291894 | None:intergenic |
| CTCCGTTTAGCATATGGGTT+GGG | 0.407591 | 1_1:+4291774 | None:intergenic |
| CCATTCTCCCTTTAGCATAT+GGG | 0.409340 | 1_1:+4291802 | None:intergenic |
| GCAGCTCCCTCCCAATTAAC+TGG | 0.410875 | 1_1:-4292806 | Msa0002400:CDS |
| TCATAAGAGAGCACATGATT+TGG | 0.411083 | 1_1:-4292717 | Msa0002400:CDS |
| TTTGTTAAAATATTTAAAAC+CGG | 0.417027 | 1_1:-4292099 | Msa0002400:CDS |
| AAGGTCTTGACCAGCAAAAT+GGG | 0.444958 | 1_1:-4291620 | Msa0002400:CDS |
| TGGTAGGAAGCACCAAATCT+TGG | 0.448666 | 1_1:-4294308 | Msa0002400:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.454776 | 1_1:+4292113 | None:intergenic |
| TATGAAGAAATTGGGTGAAA+TGG | 0.456523 | 1_1:+4294250 | None:intergenic |
| GACACTGTTTACTTCACAAA+CGG | 0.464277 | 1_1:-4293121 | Msa0002400:CDS |
| CTGGTCTCCGTTTAGCATAT+GGG | 0.464781 | 1_1:+4291769 | None:intergenic |
| GAAAAGAGGAGGTAAATGAT+TGG | 0.467251 | 1_1:+4292127 | None:intergenic |
| TGATGATGATACAGCTAATT+GGG | 0.467582 | 1_1:+4291435 | None:intergenic |
| TGATGCAAGTTCATATATCT+GGG | 0.470555 | 1_1:-4291653 | Msa0002400:CDS |
| GGTAGGAAGCACCAAATCTT+GGG | 0.471144 | 1_1:-4294307 | Msa0002400:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_1:+4293174 | None:intergenic |
| AACCCAACCCATATGCTAAA+CGG | 0.481333 | 1_1:-4291776 | Msa0002400:CDS |
| AACTCCATCCCATATGCTAA+AGG | 0.483606 | 1_1:-4291810 | Msa0002400:CDS |
| TCAAAGGACAAAGCTAAAGT+AGG | 0.487427 | 1_1:+4294368 | None:intergenic |
| CCCATATGCTAAAGGGAGAA+TGG | 0.493925 | 1_1:-4291802 | Msa0002400:CDS |
| CCTCCCAATTAACTGGCAAA+AGG | 0.496383 | 1_1:-4292799 | Msa0002400:CDS |
| AATAAATTTACGCTTGTCCT+CGG | 0.500280 | 1_1:-4292761 | Msa0002400:CDS |
| TCTCCGTTTAGCATATGGGT+TGG | 0.500425 | 1_1:+4291773 | None:intergenic |
| TTGGGAGGGAGCTGCAACAG+GGG | 0.501107 | 1_1:+4292814 | None:intergenic |
| CTTGACCAGCAAAATGGGAA+TGG | 0.504154 | 1_1:-4291615 | Msa0002400:CDS |
| CTTCCTCGTGAACTGTTGAA+GGG | 0.506288 | 1_1:-4294399 | Msa0002400:five_prime_UTR |
| ACTCCATCCCATATGCTAAA+GGG | 0.506467 | 1_1:-4291809 | Msa0002400:CDS |
| TTGACCAGCAAAATGGGAAT+GGG | 0.509143 | 1_1:-4291614 | Msa0002400:CDS |
| AAAAGAGGAGGTAAATGATT+GGG | 0.509472 | 1_1:+4292128 | None:intergenic |
| GCAATTCAAGAGGTGAATGT+TGG | 0.513680 | 1_1:-4291839 | Msa0002400:CDS |
| GGTCATGCTCAAACCGAACA+AGG | 0.526750 | 1_1:-4292953 | Msa0002400:CDS |
| CTACTTCTCTTTGAAATGGT+AGG | 0.527392 | 1_1:-4294324 | Msa0002400:exon |
| TAAGAGAGCACATGATTTGG+TGG | 0.528009 | 1_1:-4292714 | Msa0002400:CDS |
| CAAGTTCATATATCTGGGGT+TGG | 0.532218 | 1_1:-4291648 | Msa0002400:CDS |
| CATCAGCCATGCACTTCTCA+GGG | 0.533895 | 1_1:+4292852 | None:intergenic |
| GAGAGAGGGAAAGGGTTCAA+AGG | 0.534422 | 1_1:+4294352 | None:intergenic |
| AATGTTATTATCACGAACAA+AGG | 0.534520 | 1_1:+4291719 | None:intergenic |
| ATATCTGGGGTTGGAAAGGA+AGG | 0.539398 | 1_1:-4291639 | Msa0002400:CDS |
| TCATATATCTGGGGTTGGAA+AGG | 0.547674 | 1_1:-4291643 | Msa0002400:CDS |
| GCATCCATCGTGCATAGATG+TGG | 0.553217 | 1_1:-4292174 | Msa0002400:CDS |
| TCACAAACAAGAACGTTAGC+AGG | 0.554809 | 1_1:+4291554 | None:intergenic |
| GGAGGGAGCTGCAACAGGGG+TGG | 0.557934 | 1_1:+4292817 | None:intergenic |
| TGGACTTAGTTTCTGTGAGA+AGG | 0.559379 | 1_1:-4293002 | Msa0002400:CDS |
| GGTGGTGCTATGAAGAAATT+GGG | 0.559533 | 1_1:+4294242 | None:intergenic |
| CAAAGGACAAAGCTAAAGTA+GGG | 0.561608 | 1_1:+4294369 | None:intergenic |
| TGCTTCCCCTGAGAAGTGCA+TGG | 0.578286 | 1_1:-4292858 | Msa0002400:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578782 | 1_1:+4293163 | None:intergenic |
| GTTACGCTTCGCAATTCAAG+AGG | 0.584227 | 1_1:-4291849 | Msa0002400:CDS |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 1_1:+4292116 | None:intergenic |
| GTCATGCTCAAACCGAACAA+GGG | 0.590087 | 1_1:-4292952 | Msa0002400:CDS |
| TCTCCCTTTAGCATATGGGA+TGG | 0.591297 | 1_1:+4291806 | None:intergenic |
| CTGTTTACTTCACAAACGGT+TGG | 0.594993 | 1_1:-4293117 | Msa0002400:CDS |
| ATTGGGAGGGAGCTGCAACA+GGG | 0.596413 | 1_1:+4292813 | None:intergenic |
| ACGTGAAACATTGATATCGC+CGG | 0.611796 | 1_1:+4292080 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_1:-4293168 | Msa0002400:CDS |
| CATCCATCGTGCATAGATGT+GGG | 0.626633 | 1_1:-4292173 | Msa0002400:CDS |
| CATCGTGCATAGATGTGGGA+AGG | 0.628421 | 1_1:-4292169 | Msa0002400:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_1:-4293178 | Msa0002400:CDS |
| TCATGCTCAAACCGAACAAG+GGG | 0.635196 | 1_1:-4292951 | Msa0002400:CDS |
| CAGTTCACGAGGAAGATGAA+AGG | 0.657063 | 1_1:+4294407 | None:intergenic |
| AAGTTGTTGTTGAAAATCGG+TGG | 0.662291 | 1_1:+4294224 | None:intergenic |
| AGGAAGCACCAAATCTTGGG+AGG | 0.669254 | 1_1:-4294304 | Msa0002400:CDS |
| AAACCCTTCAACAGTTCACG+AGG | 0.670720 | 1_1:+4294396 | None:intergenic |
| CTTCCCACATCTATGCACGA+TGG | 0.671357 | 1_1:+4292170 | None:intergenic |
| GCCTGTAACAAAGAACACTC+AGG | 0.672455 | 1_1:-4292692 | Msa0002400:intron |
| CGACATGAACTGAAATGCAG+CGG | 0.675891 | 1_1:+4291374 | None:intergenic |
| CAAGGACACAAACAAGTCTG+TGG | 0.678532 | 1_1:-4292918 | Msa0002400:CDS |
| ATCAGCCATGCACTTCTCAG+GGG | 0.683978 | 1_1:+4292853 | None:intergenic |
| CATGCTCAAACCGAACAAGG+GGG | 0.761893 | 1_1:-4292950 | Msa0002400:CDS |
| GATGCAAGTTCATATATCTG+GGG | 0.765392 | 1_1:-4291652 | Msa0002400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAACAAAATTTAAA+AGG | + | chr1_1:4291794-4291813 | None:intergenic | 10.0% |
| !! | ATAATTAAGTAAATTGTTTA+AGG | - | chr1_1:4292015-4292034 | Msa0002400:intron | 10.0% |
| !! | ACAAAAAAAAAAAATGAAAA+AGG | + | chr1_1:4293197-4293216 | None:intergenic | 10.0% |
| !! | TTATAATTAATACTAGTAAA+AGG | + | chr1_1:4293404-4293423 | None:intergenic | 10.0% |
| !!! | TTTGTTAAAATATTTAAAAC+CGG | - | chr1_1:4293750-4293769 | Msa0002400:intron | 10.0% |
| !! | TTTCTATTCATATATATAAG+AGG | + | chr1_1:4291391-4291410 | None:intergenic | 15.0% |
| !!! | TTTCATTTTAATTTTCAACA+TGG | + | chr1_1:4291682-4291701 | None:intergenic | 15.0% |
| !! | GTATAAAATATAAAAAACCA+TGG | + | chr1_1:4291897-4291916 | None:intergenic | 15.0% |
| !! | AATAAAATTGTTAATTAACG+TGG | - | chr1_1:4292164-4292183 | Msa0002400:CDS | 15.0% |
| !! | AAAAAAAAAAATGAAAAAGG+AGG | + | chr1_1:4293194-4293213 | None:intergenic | 15.0% |
| !!! | AATCATCAGTTTTAAATAAA+AGG | + | chr1_1:4293632-4293651 | None:intergenic | 15.0% |
| !! | CAAAAATTACTTAAAGATAA+GGG | + | chr1_1:4293862-4293881 | None:intergenic | 15.0% |
| !! | ACAAAAATTACTTAAAGATA+AGG | + | chr1_1:4293863-4293882 | None:intergenic | 15.0% |
| !!! | ATTTTAATTTTCAACATGGT+AGG | + | chr1_1:4291678-4291697 | None:intergenic | 20.0% |
| !! | ACAAACAAAATTTAAAAGGT+GGG | + | chr1_1:4291790-4291809 | None:intergenic | 20.0% |
| !! | AACAAACAAAATTTAAAAGG+TGG | + | chr1_1:4291791-4291810 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr1_1:4292300-4292319 | Msa0002400:intron | 20.0% |
| !! | AATAATTATGTTTAGCTGTT+AGG | - | chr1_1:4292511-4292530 | Msa0002400:intron | 20.0% |
| !!! | GAAATTTGTATTTTAATTGC+AGG | - | chr1_1:4292598-4292617 | Msa0002400:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_1:4292629-4292648 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTTTAATCTTTGA+TGG | - | chr1_1:4292827-4292846 | Msa0002400:CDS | 20.0% |
| !! | ATTAATACTAGTAAAAGGAA+GGG | + | chr1_1:4293399-4293418 | None:intergenic | 20.0% |
| !! | AATTAATACTAGTAAAAGGA+AGG | + | chr1_1:4293400-4293419 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1_1:4293739-4293758 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+GGG | + | chr1_1:4293836-4293855 | None:intergenic | 20.0% |
| !! | CGTGATAATAACATTAAATT+TGG | - | chr1_1:4294138-4294157 | Msa0002400:intron | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+CGG | + | chr1_1:4291631-4291650 | None:intergenic | 25.0% |
| !!! | AAAGTTTTCATTTTTTGCCA+TGG | - | chr1_1:4291877-4291896 | Msa0002400:CDS | 25.0% |
| !! | AAATTGTTTAAGGTTCTGTT+TGG | - | chr1_1:4292025-4292044 | Msa0002400:intron | 25.0% |
| !! | AATTGTTTAAGGTTCTGTTT+GGG | - | chr1_1:4292026-4292045 | Msa0002400:intron | 25.0% |
| ! | TACAGTGTAATTATATGTGT+CGG | + | chr1_1:4292275-4292294 | None:intergenic | 25.0% |
| ! | TGAGATTAAAACATACATTG+AGG | + | chr1_1:4292574-4292593 | None:intergenic | 25.0% |
| !!! | ATGTATGTTTTAATCTCAGA+TGG | - | chr1_1:4292576-4292595 | Msa0002400:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | - | chr1_1:4292875-4292894 | Msa0002400:CDS | 25.0% |
| ! | ACAAGCGTAAATTTATTAAC+AGG | + | chr1_1:4293085-4293104 | None:intergenic | 25.0% |
| !! | TAAGCTCTGACATAAATATA+AGG | + | chr1_1:4293608-4293627 | None:intergenic | 25.0% |
| ! | GTAAATGAAGAATCACAAAA+GGG | + | chr1_1:4293811-4293830 | None:intergenic | 25.0% |
| ! | GAGAGATAAAACAACATTAT+TGG | + | chr1_1:4293837-4293856 | None:intergenic | 25.0% |
| ! | AATGTTATTATCACGAACAA+AGG | + | chr1_1:4294133-4294152 | None:intergenic | 25.0% |
| !! | ACAGAAATCAATTTTCAATG+TGG | - | chr1_1:4294319-4294338 | Msa0002400:exon | 25.0% |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_1:4291587-4291606 | None:intergenic | 30.0% | |
| TATGAAGAAATTGGGTGAAA+TGG | + | chr1_1:4291602-4291621 | None:intergenic | 30.0% | |
| CTAATATGAACACTTCAGAA+GGG | + | chr1_1:4291705-4291724 | None:intergenic | 30.0% | |
| ! | GAAGTGTTCATATTAGGATT+TGG | - | chr1_1:4291709-4291728 | Msa0002400:CDS | 30.0% |
| ATTTACACAGATAGTGTTTG+CGG | + | chr1_1:4292124-4292143 | None:intergenic | 30.0% | |
| CATTAATGACCAATGAAGTA+CGG | - | chr1_1:4292187-4292206 | Msa0002400:intron | 30.0% | |
| ACTATATTACAACTGTGTGA+GGG | - | chr1_1:4292376-4292395 | Msa0002400:intron | 30.0% | |
| AATTTGAACTTTGTACCTTG+AGG | - | chr1_1:4292399-4292418 | Msa0002400:intron | 30.0% | |
| ACATGATTTACATACACTTG+AGG | + | chr1_1:4292458-4292477 | None:intergenic | 30.0% | |
| ! | TTCCTTTTCTTCAAGTACAA+TGG | - | chr1_1:4292794-4292813 | Msa0002400:CDS | 30.0% |
| !! | AATCAATACTGCTTTTGATG+CGG | - | chr1_1:4292958-4292977 | Msa0002400:CDS | 30.0% |
| AATAAATTTACGCTTGTCCT+CGG | - | chr1_1:4293088-4293107 | Msa0002400:CDS | 30.0% | |
| ! | CTTTGCTCTGACTTTTAAAT+GGG | + | chr1_1:4293287-4293306 | None:intergenic | 30.0% |
| GAATGAAGGAAAGGTTAAAA+TGG | + | chr1_1:4293499-4293518 | None:intergenic | 30.0% | |
| ! | TTTTAACCTTTCCTTCATTC+TGG | - | chr1_1:4293499-4293518 | Msa0002400:intron | 30.0% |
| TTTAACCTTTCCTTCATTCT+GGG | - | chr1_1:4293500-4293519 | Msa0002400:intron | 30.0% | |
| !! | AGAAAAGTATCAGTTTGCTA+GGG | + | chr1_1:4293560-4293579 | None:intergenic | 30.0% |
| AACTGTTCAATTTCTTACAG+AGG | - | chr1_1:4293653-4293672 | Msa0002400:intron | 30.0% | |
| AAAAGAGGAGGTAAATGATT+GGG | + | chr1_1:4293724-4293743 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr1_1:4293736-4293755 | None:intergenic | 30.0% | |
| TATCAATGTTTCACGTACTA+TGG | - | chr1_1:4293776-4293795 | Msa0002400:intron | 30.0% | |
| GGTAAATGAAGAATCACAAA+AGG | + | chr1_1:4293812-4293831 | None:intergenic | 30.0% | |
| GATAAAACAACATTATTGGG+AGG | + | chr1_1:4293833-4293852 | None:intergenic | 30.0% | |
| TGATGCAAGTTCATATATCT+GGG | - | chr1_1:4294196-4294215 | Msa0002400:intron | 30.0% | |
| ! | TGATGATGATACAGCTAATT+GGG | + | chr1_1:4294417-4294436 | None:intergenic | 30.0% |
| CAAAGGACAAAGCTAAAGTA+GGG | + | chr1_1:4291483-4291502 | None:intergenic | 35.0% | |
| TCAAAGGACAAAGCTAAAGT+AGG | + | chr1_1:4291484-4291503 | None:intergenic | 35.0% | |
| ! | CTCTCTACTTCTCTTTGAAA+TGG | - | chr1_1:4291521-4291540 | Msa0002400:three_prime_UTR | 35.0% |
| !! | CTACTTCTCTTTGAAATGGT+AGG | - | chr1_1:4291525-4291544 | Msa0002400:three_prime_UTR | 35.0% |
| ! | AAGTTGTTGTTGAAAATCGG+TGG | + | chr1_1:4291628-4291647 | None:intergenic | 35.0% |
| CCTAATATGAACACTTCAGA+AGG | + | chr1_1:4291706-4291725 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTGTTCATATT+AGG | - | chr1_1:4291703-4291722 | Msa0002400:CDS | 35.0% |
| ! | GCTGTTCATTATTCTTTTCC+TGG | - | chr1_1:4292096-4292115 | Msa0002400:CDS | 35.0% |
| !! | TTATATGTGTCGGTGTCTTT+TGG | + | chr1_1:4292265-4292284 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+TGG | - | chr1_1:4292306-4292325 | Msa0002400:intron | 35.0% | |
| ATAGTCATGACTATGAAGCA+CGG | + | chr1_1:4292361-4292380 | None:intergenic | 35.0% | |
| GACTATATTACAACTGTGTG+AGG | - | chr1_1:4292375-4292394 | Msa0002400:intron | 35.0% | |
| GACACTGTTTACTTCACAAA+CGG | - | chr1_1:4292728-4292747 | Msa0002400:CDS | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | - | chr1_1:4292866-4292885 | Msa0002400:CDS | 35.0% |
| !! | ATCAATACTGCTTTTGATGC+GGG | - | chr1_1:4292959-4292978 | Msa0002400:CDS | 35.0% |
| ! | GATCCTTTTGCCAGTTAATT+GGG | + | chr1_1:4293056-4293075 | None:intergenic | 35.0% |
| ! | TGATCCTTTTGCCAGTTAAT+TGG | + | chr1_1:4293057-4293076 | None:intergenic | 35.0% |
| !! | TTATGAGAAGTAGCTGCTTT+TGG | + | chr1_1:4293118-4293137 | None:intergenic | 35.0% |
| ! | TCATAAGAGAGCACATGATT+TGG | - | chr1_1:4293132-4293151 | Msa0002400:CDS | 35.0% |
| ! | GCTTTGCTCTGACTTTTAAA+TGG | + | chr1_1:4293288-4293307 | None:intergenic | 35.0% |
| TAAAAGGAAGGGAAAGACTT+AGG | + | chr1_1:4293388-4293407 | None:intergenic | 35.0% | |
| AAGGAAAGGTTAAAATGGAG+AGG | + | chr1_1:4293494-4293513 | None:intergenic | 35.0% | |
| !!! | TTTTTTGAGACCCAGAATGA+AGG | + | chr1_1:4293513-4293532 | None:intergenic | 35.0% |
| !! | CAGAAAAGTATCAGTTTGCT+AGG | + | chr1_1:4293561-4293580 | None:intergenic | 35.0% |
| GAAAAGAGGAGGTAAATGAT+TGG | + | chr1_1:4293725-4293744 | None:intergenic | 35.0% | |
| ! | TAACTTCTGTTTTGCAGTCA+GGG | + | chr1_1:4293984-4294003 | None:intergenic | 35.0% |
| GTGATGCAAGTTCATATATC+TGG | - | chr1_1:4294195-4294214 | Msa0002400:intron | 35.0% | |
| GATGCAAGTTCATATATCTG+GGG | - | chr1_1:4294197-4294216 | Msa0002400:intron | 35.0% | |
| ! | GTGATGATGATACAGCTAAT+TGG | + | chr1_1:4294418-4294437 | None:intergenic | 35.0% |
| AATCTCTTCCTCCCAAGATT+TGG | + | chr1_1:4291556-4291575 | None:intergenic | 40.0% | |
| !! | GGTGGTGCTATGAAGAAATT+GGG | + | chr1_1:4291610-4291629 | None:intergenic | 40.0% |
| AATGAAGTACGGACACTTCT+CGG | - | chr1_1:4292198-4292217 | Msa0002400:intron | 40.0% | |
| !! | GACTTAGCTTTGTAACCTCA+AGG | + | chr1_1:4292417-4292436 | None:intergenic | 40.0% |
| !! | GTGAAGAGCGTAACAGATTT+TGG | + | chr1_1:4292552-4292571 | None:intergenic | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_1:4292665-4292684 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_1:4292662-4292681 | Msa0002400:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_1:4292678-4292697 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_1:4292689-4292708 | None:intergenic | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | - | chr1_1:4292732-4292751 | Msa0002400:CDS | 40.0% | |
| CGCCATTGTACTTGAAGAAA+AGG | + | chr1_1:4292799-4292818 | None:intergenic | 40.0% | |
| TGGACTTAGTTTCTGTGAGA+AGG | - | chr1_1:4292847-4292866 | Msa0002400:CDS | 40.0% | |
| ! | CTTTTGCCAGTTAATTGGGA+GGG | + | chr1_1:4293052-4293071 | None:intergenic | 40.0% |
| ! | TAAGAGAGCACATGATTTGG+TGG | - | chr1_1:4293135-4293154 | Msa0002400:CDS | 40.0% |
| ACCTGAGTGTTCTTTGTTAC+AGG | + | chr1_1:4293161-4293180 | None:intergenic | 40.0% | |
| ! | TCTGACTTTTAAATGGGACC+CGG | + | chr1_1:4293281-4293300 | None:intergenic | 40.0% |
| ! | AGTCAGAGCAAAGCTTTGTA+TGG | - | chr1_1:4293294-4293313 | Msa0002400:intron | 40.0% |
| AAGGGAAAGACTTAGGACTT+TGG | + | chr1_1:4293381-4293400 | None:intergenic | 40.0% | |
| TAAAATGGAGAGGAGCTTGT+TGG | + | chr1_1:4293484-4293503 | None:intergenic | 40.0% | |
| ACGTGAAACATTGATATCGC+CGG | + | chr1_1:4293772-4293791 | None:intergenic | 40.0% | |
| ATCTGCTTGACAAACTGATC+TGG | - | chr1_1:4293891-4293910 | Msa0002400:intron | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | + | chr1_1:4293958-4293977 | None:intergenic | 40.0% | |
| ! | GTAACTTCTGTTTTGCAGTC+AGG | + | chr1_1:4293985-4294004 | None:intergenic | 40.0% |
| GCAATTCAAGAGGTGAATGT+TGG | - | chr1_1:4294010-4294029 | Msa0002400:intron | 40.0% | |
| AACTCCATCCCATATGCTAA+AGG | - | chr1_1:4294039-4294058 | Msa0002400:intron | 40.0% | |
| ACTCCATCCCATATGCTAAA+GGG | - | chr1_1:4294040-4294059 | Msa0002400:intron | 40.0% | |
| CCATTCTCCCTTTAGCATAT+GGG | + | chr1_1:4294050-4294069 | None:intergenic | 40.0% | |
| ACCATTCTCCCTTTAGCATA+TGG | + | chr1_1:4294051-4294070 | None:intergenic | 40.0% | |
| AACCCAACCCATATGCTAAA+CGG | - | chr1_1:4294073-4294092 | Msa0002400:intron | 40.0% | |
| ! | CAAGTTCATATATCTGGGGT+TGG | - | chr1_1:4294201-4294220 | Msa0002400:intron | 40.0% |
| ! | TCATATATCTGGGGTTGGAA+AGG | - | chr1_1:4294206-4294225 | Msa0002400:intron | 40.0% |
| AAGGTCTTGACCAGCAAAAT+GGG | - | chr1_1:4294229-4294248 | Msa0002400:CDS | 40.0% | |
| TTGACCAGCAAAATGGGAAT+GGG | - | chr1_1:4294235-4294254 | Msa0002400:CDS | 40.0% | |
| CAAGAACGTTAGCAGGTAAA+TGG | + | chr1_1:4294291-4294310 | None:intergenic | 40.0% | |
| TCACAAACAAGAACGTTAGC+AGG | + | chr1_1:4294298-4294317 | None:intergenic | 40.0% | |
| CAGTTCACGAGGAAGATGAA+AGG | + | chr1_1:4291445-4291464 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACTGTTGA+AGG | - | chr1_1:4291449-4291468 | Msa0002400:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACTGTTGAA+GGG | - | chr1_1:4291450-4291469 | Msa0002400:three_prime_UTR | 45.0% | |
| AAACCCTTCAACAGTTCACG+AGG | + | chr1_1:4291456-4291475 | None:intergenic | 45.0% | |
| TAGAGAGAGAGAGAGGGAAA+GGG | + | chr1_1:4291508-4291527 | None:intergenic | 45.0% | |
| GAGAAGTAGAGAGAGAGAGA+GGG | + | chr1_1:4291514-4291533 | None:intergenic | 45.0% | |
| AGAGAAGTAGAGAGAGAGAG+AGG | + | chr1_1:4291515-4291534 | None:intergenic | 45.0% | |
| !! | TGGTAGGAAGCACCAAATCT+TGG | - | chr1_1:4291541-4291560 | Msa0002400:three_prime_UTR | 45.0% |
| !! | GGTAGGAAGCACCAAATCTT+GGG | - | chr1_1:4291542-4291561 | Msa0002400:three_prime_UTR | 45.0% |
| CTTGGGAGGAAGAGATTTAC+TGG | - | chr1_1:4291559-4291578 | Msa0002400:three_prime_UTR | 45.0% | |
| !! | CGGTGGTGCTATGAAGAAAT+TGG | + | chr1_1:4291611-4291630 | None:intergenic | 45.0% |
| GTTCTGTTTGGGAGTTTGCA+AGG | - | chr1_1:4292037-4292056 | Msa0002400:intron | 45.0% | |
| TGTTTGGGAGTTTGCAAGGA+GGG | - | chr1_1:4292041-4292060 | Msa0002400:intron | 45.0% | |
| !! | GAGAAGTGTCCGTACTTCAT+TGG | + | chr1_1:4292199-4292218 | None:intergenic | 45.0% |
| TGACTATGAAGCACGGACAT+CGG | + | chr1_1:4292354-4292373 | None:intergenic | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_1:4292679-4292698 | None:intergenic | 45.0% | |
| GTCATGCTCAAACCGAACAA+GGG | - | chr1_1:4292897-4292916 | Msa0002400:CDS | 45.0% | |
| TCATGCTCAAACCGAACAAG+GGG | - | chr1_1:4292898-4292917 | Msa0002400:CDS | 45.0% | |
| ! | CACAGACTTGTTTGTGTCCT+TGG | + | chr1_1:4292933-4292952 | None:intergenic | 45.0% |
| CAAGGACACAAACAAGTCTG+TGG | - | chr1_1:4292931-4292950 | Msa0002400:CDS | 45.0% | |
| ! | CCTTTTGCCAGTTAATTGGG+AGG | + | chr1_1:4293053-4293072 | None:intergenic | 45.0% |
| CCTCCCAATTAACTGGCAAA+AGG | - | chr1_1:4293050-4293069 | Msa0002400:CDS | 45.0% | |
| !!! | TAGCTGCTTTTGGTAATCCG+AGG | + | chr1_1:4293108-4293127 | None:intergenic | 45.0% |
| GCCTGTAACAAAGAACACTC+AGG | - | chr1_1:4293157-4293176 | Msa0002400:CDS | 45.0% | |
| ! | CTGACTTTTAAATGGGACCC+GGG | + | chr1_1:4293280-4293299 | None:intergenic | 45.0% |
| ! | TGGCAGGTTAGTTAGAGAGA+AGG | + | chr1_1:4293464-4293483 | None:intergenic | 45.0% |
| TGAGACCCAGAATGAAGGAA+AGG | + | chr1_1:4293508-4293527 | None:intergenic | 45.0% | |
| CATCCATCGTGCATAGATGT+GGG | - | chr1_1:4293676-4293695 | Msa0002400:intron | 45.0% | |
| GCTTGACAAACTGATCTGGT+TGG | - | chr1_1:4293895-4293914 | Msa0002400:intron | 45.0% | |
| GTTACGCTTCGCAATTCAAG+AGG | - | chr1_1:4294000-4294019 | Msa0002400:intron | 45.0% | |
| TCTCCCTTTAGCATATGGGA+TGG | + | chr1_1:4294046-4294065 | None:intergenic | 45.0% | |
| CCCATATGCTAAAGGGAGAA+TGG | - | chr1_1:4294047-4294066 | Msa0002400:intron | 45.0% | |
| CTCCGTTTAGCATATGGGTT+GGG | + | chr1_1:4294078-4294097 | None:intergenic | 45.0% | |
| TCTCCGTTTAGCATATGGGT+TGG | + | chr1_1:4294079-4294098 | None:intergenic | 45.0% | |
| CTGGTCTCCGTTTAGCATAT+GGG | + | chr1_1:4294083-4294102 | None:intergenic | 45.0% | |
| ! | ACTGGTCTCCGTTTAGCATA+TGG | + | chr1_1:4294084-4294103 | None:intergenic | 45.0% |
| ! | AGACCAGTTCACACCTTTTG+TGG | - | chr1_1:4294096-4294115 | Msa0002400:intron | 45.0% |
| ! | GACCAGTTCACACCTTTTGT+GGG | - | chr1_1:4294097-4294116 | Msa0002400:intron | 45.0% |
| ! | ACCAGTTCACACCTTTTGTG+GGG | - | chr1_1:4294098-4294117 | Msa0002400:intron | 45.0% |
| ! | ATATCTGGGGTTGGAAAGGA+AGG | - | chr1_1:4294210-4294229 | Msa0002400:intron | 45.0% |
| GAAGGTCTTGACCAGCAAAA+TGG | - | chr1_1:4294228-4294247 | Msa0002400:CDS | 45.0% | |
| CTTGACCAGCAAAATGGGAA+TGG | - | chr1_1:4294234-4294253 | Msa0002400:CDS | 45.0% | |
| ! | GTTTCCCATTCCCATTTTGC+TGG | + | chr1_1:4294242-4294261 | None:intergenic | 45.0% |
| !!! | TTAAATATTTTAACAAAATA+TGG | + | chr1_1:4293747-4293766 | None:intergenic | 5.0% |
| GAGAGAGGGAAAGGGTTCAA+AGG | + | chr1_1:4291500-4291519 | None:intergenic | 50.0% | |
| GTAGAGAGAGAGAGAGGGAA+AGG | + | chr1_1:4291509-4291528 | None:intergenic | 50.0% | |
| !! | AGGAAGCACCAAATCTTGGG+AGG | - | chr1_1:4291545-4291564 | Msa0002400:three_prime_UTR | 50.0% |
| CTGTTTGGGAGTTTGCAAGG+AGG | - | chr1_1:4292040-4292059 | Msa0002400:intron | 50.0% | |
| GTTTGGGAGTTTGCAAGGAG+GGG | - | chr1_1:4292042-4292061 | Msa0002400:intron | 50.0% | |
| GAGTTTGCAAGGAGGGGATA+AGG | - | chr1_1:4292048-4292067 | Msa0002400:intron | 50.0% | |
| CAGATAGTGTTTGCGGAACC+AGG | + | chr1_1:4292117-4292136 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_1:4292671-4292690 | Msa0002400:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_1:4292681-4292700 | Msa0002400:intron | 50.0% | |
| GGTCATGCTCAAACCGAACA+AGG | - | chr1_1:4292896-4292915 | Msa0002400:CDS | 50.0% | |
| CATGCTCAAACCGAACAAGG+GGG | - | chr1_1:4292899-4292918 | Msa0002400:CDS | 50.0% | |
| !! | AACCGAACAAGGGGGTATCA+AGG | - | chr1_1:4292907-4292926 | Msa0002400:CDS | 50.0% |
| !! | TACTGCTTTTGATGCGGGTG+TGG | - | chr1_1:4292964-4292983 | Msa0002400:CDS | 50.0% |
| ATCAGCCATGCACTTCTCAG+GGG | + | chr1_1:4292999-4293018 | None:intergenic | 50.0% | |
| CATCAGCCATGCACTTCTCA+GGG | + | chr1_1:4293000-4293019 | None:intergenic | 50.0% | |
| AATACTCTGTCTCCAGCCCA+AGG | - | chr1_1:4293219-4293238 | Msa0002400:CDS | 50.0% | |
| !! | CCTCGGATTAGTCAGTCCTT+GGG | + | chr1_1:4293238-4293257 | None:intergenic | 50.0% |
| CCAAGGACTGACTAATCCGA+GGG | - | chr1_1:4293236-4293255 | Msa0002400:intron | 50.0% | |
| CAAGGACTGACTAATCCGAG+GGG | - | chr1_1:4293237-4293256 | Msa0002400:intron | 50.0% | |
| ! | ACTTTTAAATGGGACCCGGG+TGG | + | chr1_1:4293277-4293296 | None:intergenic | 50.0% |
| !! | ATGGACTAGCCCACCAAAGT+TGG | - | chr1_1:4293313-4293332 | Msa0002400:intron | 50.0% |
| ATCAAACCGGAGACCTTGAG+AGG | - | chr1_1:4293347-4293366 | Msa0002400:intron | 50.0% | |
| ! | TTTGGAGTGTGCTCCTCTCA+AGG | + | chr1_1:4293363-4293382 | None:intergenic | 50.0% |
| GCATCCATCGTGCATAGATG+TGG | - | chr1_1:4293675-4293694 | Msa0002400:intron | 50.0% | |
| CTTCCCACATCTATGCACGA+TGG | + | chr1_1:4293682-4293701 | None:intergenic | 50.0% | |
| CATCGTGCATAGATGTGGGA+AGG | - | chr1_1:4293680-4293699 | Msa0002400:intron | 50.0% | |
| ! | CCAGTTCACACCTTTTGTGG+GGG | - | chr1_1:4294099-4294118 | Msa0002400:intron | 50.0% |
| ! | TTCACACCTTTTGTGGGGGT+TGG | - | chr1_1:4294103-4294122 | Msa0002400:intron | 50.0% |
| ! | TCACACCTTTTGTGGGGGTT+GGG | - | chr1_1:4294104-4294123 | Msa0002400:intron | 50.0% |
| !! | GTGTCGGTGTCTTTTGGCGT+CGG | + | chr1_1:4292259-4292278 | None:intergenic | 55.0% |
| ! | CACTTGAGGTGCTAGCTCAG+TGG | + | chr1_1:4292444-4292463 | None:intergenic | 55.0% |
| GGCCTTGATACCCCCTTGTT+CGG | + | chr1_1:4292912-4292931 | None:intergenic | 55.0% | |
| !! | ACAAGGGGGTATCAAGGCCA+AGG | - | chr1_1:4292913-4292932 | Msa0002400:CDS | 55.0% |
| ! | TGCTTCCCCTGAGAAGTGCA+TGG | - | chr1_1:4292991-4293010 | Msa0002400:CDS | 55.0% |
| GCATCAGCCATGCACTTCTC+AGG | + | chr1_1:4293001-4293020 | None:intergenic | 55.0% | |
| ATTGGGAGGGAGCTGCAACA+GGG | + | chr1_1:4293039-4293058 | None:intergenic | 55.0% | |
| AATTGGGAGGGAGCTGCAAC+AGG | + | chr1_1:4293040-4293059 | None:intergenic | 55.0% | |
| GCAGCTCCCTCCCAATTAAC+TGG | - | chr1_1:4293043-4293062 | Msa0002400:CDS | 55.0% | |
| !! | GGATTAGTCAGTCCTTGGGC+TGG | + | chr1_1:4293234-4293253 | None:intergenic | 55.0% |
| CCCAAGGACTGACTAATCCG+AGG | - | chr1_1:4293235-4293254 | Msa0002400:intron | 55.0% | |
| !! | CCCTCGGATTAGTCAGTCCT+TGG | + | chr1_1:4293239-4293258 | None:intergenic | 55.0% |
| !! | ATTCCCCTCGGTGCCAACTT+TGG | + | chr1_1:4293329-4293348 | None:intergenic | 55.0% |
| ! | GTCTCCGGTTTGATTCCCCT+CGG | + | chr1_1:4293341-4293360 | None:intergenic | 55.0% |
| TGTGCTCCTCTCAAGGTCTC+CGG | + | chr1_1:4293356-4293375 | None:intergenic | 55.0% | |
| !! | ATGGAGAGGAGCTTGTTGGC+AGG | + | chr1_1:4293480-4293499 | None:intergenic | 55.0% |
| ! | CCCCCACAAAAGGTGTGAAC+TGG | + | chr1_1:4294102-4294121 | None:intergenic | 55.0% |
| ! | GAGGTGCTAGCTCAGTGGCA+AGG | + | chr1_1:4292439-4292458 | None:intergenic | 60.0% |
| TTGGGAGGGAGCTGCAACAG+GGG | + | chr1_1:4293038-4293057 | None:intergenic | 60.0% | |
| !! | CCCTCGGTGCCAACTTTGGT+GGG | + | chr1_1:4293325-4293344 | None:intergenic | 60.0% |
| ! | CCCACCAAAGTTGGCACCGA+GGG | - | chr1_1:4293322-4293341 | Msa0002400:intron | 60.0% |
| ! | CCACCAAAGTTGGCACCGAG+GGG | - | chr1_1:4293323-4293342 | Msa0002400:intron | 60.0% |
| ! | GGCACCGAGGGGAATCAAAC+CGG | - | chr1_1:4293334-4293353 | Msa0002400:intron | 60.0% |
| ! | CACCTTTTGTGGGGGTTGGG+TGG | - | chr1_1:4294107-4294126 | Msa0002400:intron | 60.0% |
| GACTGCGGGATTGGACCCCT+CGG | + | chr1_1:4293255-4293274 | None:intergenic | 65.0% | |
| GTCCAATCCCGCAGTCCACC+CGG | - | chr1_1:4293259-4293278 | Msa0002400:intron | 65.0% | |
| TCCAATCCCGCAGTCCACCC+GGG | - | chr1_1:4293260-4293279 | Msa0002400:intron | 65.0% | |
| !! | AATGGGACCCGGGTGGACTG+CGG | + | chr1_1:4293270-4293289 | None:intergenic | 65.0% |
| GCCCACCAAAGTTGGCACCG+AGG | - | chr1_1:4293321-4293340 | Msa0002400:intron | 65.0% | |
| !! | CCCCTCGGTGCCAACTTTGG+TGG | + | chr1_1:4293326-4293345 | None:intergenic | 65.0% |
| GGCCACCCAACCCCCACAAA+AGG | + | chr1_1:4294112-4294131 | None:intergenic | 65.0% | |
| GGAGGGAGCTGCAACAGGGG+TGG | + | chr1_1:4293035-4293054 | None:intergenic | 70.0% | |
| !! | ACCCGGGTGGACTGCGGGAT+TGG | + | chr1_1:4293264-4293283 | None:intergenic | 70.0% |
| !! | ATGGGACCCGGGTGGACTGC+GGG | + | chr1_1:4293269-4293288 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4291377 | 4294494 | 4291377 | ID=Msa0002400;Name=Msa0002400 |
| chr1_1 | mRNA | 4291377 | 4294494 | 4291377 | ID=Msa0002400-mRNA-1;Parent=Msa0002400;Name=Msa0002400-mRNA-1;_AED=0.35;_eAED=0.35;_QI=163|1|1|1|1|1|4|219|372 |
| chr1_1 | exon | 4291377 | 4291922 | 4291377 | ID=Msa0002400-mRNA-1:exon:1352;Parent=Msa0002400-mRNA-1 |
| chr1_1 | exon | 4292074 | 4292198 | 4292074 | ID=Msa0002400-mRNA-1:exon:1351;Parent=Msa0002400-mRNA-1 |
| chr1_1 | exon | 4292693 | 4293251 | 4292693 | ID=Msa0002400-mRNA-1:exon:1350;Parent=Msa0002400-mRNA-1 |
| chr1_1 | exon | 4294224 | 4294494 | 4294224 | ID=Msa0002400-mRNA-1:exon:1349;Parent=Msa0002400-mRNA-1 |
| chr1_1 | five_prime_UTR | 4294332 | 4294494 | 4294332 | ID=Msa0002400-mRNA-1:five_prime_utr;Parent=Msa0002400-mRNA-1 |
| chr1_1 | CDS | 4294224 | 4294331 | 4294224 | ID=Msa0002400-mRNA-1:cds;Parent=Msa0002400-mRNA-1 |
| chr1_1 | CDS | 4292693 | 4293251 | 4292693 | ID=Msa0002400-mRNA-1:cds;Parent=Msa0002400-mRNA-1 |
| chr1_1 | CDS | 4292074 | 4292198 | 4292074 | ID=Msa0002400-mRNA-1:cds;Parent=Msa0002400-mRNA-1 |
| chr1_1 | CDS | 4291596 | 4291922 | 4291596 | ID=Msa0002400-mRNA-1:cds;Parent=Msa0002400-mRNA-1 |
| chr1_1 | three_prime_UTR | 4291377 | 4291595 | 4291377 | ID=Msa0002400-mRNA-1:three_prime_utr;Parent=Msa0002400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
