Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051290 | XP_013466025.1 | 93.011 | 372 | 26 | 0 | 1 | 372 | 1 | 372 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051290 | sp|Q8RYD1|REM16_ARATH | 31.805 | 349 | 190 | 9 | 8 | 353 | 11 | 314 | 1.89e-46 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051290 | A0A072VDG5 | 93.011 | 372 | 26 | 0 | 1 | 372 | 1 | 372 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0051290 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002400 | Msa0051290 | 0.978384 | 1.032426e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051290 | MtrunA17_Chr1g0154191 | 93.011 | 372 | 26 | 0 | 1 | 372 | 1 | 372 | 0.0 | 719 |
| Msa0051290 | MtrunA17_Chr1g0154171 | 72.654 | 373 | 78 | 5 | 5 | 371 | 6 | 360 | 0.0 | 517 |
| Msa0051290 | MtrunA17_Chr1g0154161 | 64.130 | 368 | 77 | 5 | 5 | 372 | 13 | 325 | 1.26e-163 | 461 |
| Msa0051290 | MtrunA17_Chr1g0154211 | 54.926 | 406 | 130 | 5 | 2 | 366 | 3 | 396 | 1.81e-148 | 425 |
| Msa0051290 | MtrunA17_Chr1g0154151 | 64.392 | 337 | 79 | 7 | 37 | 364 | 19 | 323 | 2.62e-142 | 407 |
| Msa0051290 | MtrunA17_Chr1g0154101 | 50.109 | 457 | 118 | 6 | 6 | 365 | 168 | 611 | 5.30e-138 | 413 |
| Msa0051290 | MtrunA17_Chr1g0154101 | 77.914 | 163 | 36 | 0 | 3 | 165 | 6 | 168 | 3.66e-82 | 267 |
| Msa0051290 | MtrunA17_Chr1g0154101 | 38.218 | 348 | 177 | 7 | 36 | 371 | 521 | 842 | 1.19e-57 | 201 |
| Msa0051290 | MtrunA17_Chr1g0154111 | 57.219 | 374 | 132 | 7 | 4 | 363 | 8 | 367 | 9.61e-137 | 402 |
| Msa0051290 | MtrunA17_Chr1g0154111 | 55.714 | 210 | 71 | 6 | 37 | 226 | 368 | 575 | 5.21e-56 | 192 |
| Msa0051290 | MtrunA17_Chr1g0154131 | 56.667 | 360 | 106 | 7 | 6 | 364 | 168 | 478 | 1.34e-130 | 382 |
| Msa0051290 | MtrunA17_Chr1g0154131 | 69.643 | 168 | 50 | 1 | 4 | 171 | 8 | 174 | 1.74e-74 | 238 |
| Msa0051290 | MtrunA17_Chr1g0154071 | 52.304 | 369 | 136 | 6 | 10 | 360 | 145 | 491 | 3.87e-119 | 354 |
| Msa0051290 | MtrunA17_Chr1g0154071 | 77.941 | 136 | 29 | 1 | 2 | 137 | 8 | 142 | 4.82e-65 | 214 |
| Msa0051290 | MtrunA17_Chr1g0154241 | 62.452 | 261 | 54 | 6 | 1 | 222 | 1 | 256 | 1.40e-96 | 288 |
| Msa0051290 | MtrunA17_Chr1g0154251 | 43.142 | 401 | 151 | 12 | 3 | 341 | 8 | 393 | 7.31e-89 | 276 |
| Msa0051290 | MtrunA17_Chr1g0154041 | 35.519 | 366 | 195 | 10 | 21 | 365 | 15 | 360 | 2.04e-60 | 204 |
| Msa0051290 | MtrunA17_Chr1g0154041 | 40.299 | 335 | 151 | 10 | 56 | 372 | 293 | 596 | 4.35e-59 | 201 |
| Msa0051290 | MtrunA17_Chr1g0154121 | 43.119 | 109 | 44 | 2 | 273 | 372 | 2 | 101 | 3.44e-22 | 90.1 |
| Msa0051290 | MtrunA17_Chr1g0208771 | 25.369 | 339 | 202 | 12 | 26 | 358 | 1 | 294 | 1.37e-21 | 95.9 |
| Msa0051290 | MtrunA17_Chr7g0233561 | 24.198 | 343 | 202 | 9 | 20 | 352 | 16 | 310 | 1.40e-21 | 94.4 |
| Msa0051290 | MtrunA17_Chr3g0131891 | 25.434 | 346 | 187 | 9 | 16 | 352 | 18 | 301 | 8.61e-21 | 92.0 |
| Msa0051290 | MtrunA17_Chr7g0233531 | 25.155 | 322 | 172 | 8 | 38 | 352 | 2 | 261 | 1.23e-18 | 85.1 |
| Msa0051290 | MtrunA17_Chr8g0390841 | 23.229 | 353 | 213 | 12 | 15 | 358 | 32 | 335 | 1.19e-15 | 78.2 |
| Msa0051290 | MtrunA17_Chr3g0077411 | 22.936 | 327 | 171 | 10 | 20 | 345 | 260 | 506 | 5.08e-14 | 73.2 |
| Msa0051290 | MtrunA17_Chr7g0233571 | 34.694 | 98 | 64 | 0 | 15 | 112 | 3 | 100 | 1.05e-13 | 69.7 |
| Msa0051290 | MtrunA17_Chr4g0067431 | 22.561 | 328 | 206 | 10 | 20 | 342 | 13 | 297 | 7.54e-12 | 65.9 |
| Msa0051290 | MtrunA17_Chr3g0077461 | 29.167 | 144 | 98 | 1 | 21 | 164 | 236 | 375 | 2.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051290 | AT4G33280.1 | 31.805 | 349 | 190 | 9 | 8 | 353 | 11 | 314 | 1.92e-47 | 164 |
| Msa0051290 | AT4G33280.2 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 5.60e-43 | 151 |
| Msa0051290 | AT4G33280.3 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 5.29e-42 | 151 |
| Msa0051290 | AT3G18990.2 | 25.073 | 343 | 227 | 11 | 22 | 350 | 6 | 332 | 1.34e-19 | 89.7 |
| Msa0051290 | AT3G18990.1 | 25.073 | 343 | 227 | 11 | 22 | 350 | 6 | 332 | 1.34e-19 | 89.4 |
| Msa0051290 | AT4G34400.2 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 1.25e-17 | 84.0 |
| Msa0051290 | AT4G34400.1 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 1.25e-17 | 84.0 |
| Msa0051290 | AT5G66980.1 | 24.242 | 330 | 179 | 15 | 34 | 343 | 21 | 299 | 1.68e-14 | 74.3 |
| Msa0051290 | AT5G60130.5 | 40.659 | 91 | 49 | 2 | 34 | 119 | 25 | 115 | 9.91e-14 | 70.9 |
| Msa0051290 | AT5G60130.3 | 41.573 | 89 | 47 | 2 | 36 | 119 | 1 | 89 | 1.27e-13 | 71.2 |
| Msa0051290 | AT5G60130.2 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.75e-13 | 70.9 |
| Msa0051290 | AT5G60130.1 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.86e-13 | 70.9 |
| Msa0051290 | AT5G60130.4 | 41.573 | 89 | 47 | 2 | 36 | 119 | 24 | 112 | 1.91e-13 | 70.9 |
| Msa0051290 | AT3G06220.1 | 32.222 | 90 | 59 | 1 | 22 | 111 | 11 | 98 | 2.26e-13 | 68.2 |
| Msa0051290 | AT3G06160.1 | 34.444 | 90 | 57 | 1 | 22 | 111 | 26 | 113 | 3.07e-12 | 67.4 |
| Msa0051290 | AT3G06160.5 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0051290 | AT3G06160.4 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0051290 | AT3G06160.3 | 34.444 | 90 | 57 | 1 | 22 | 111 | 11 | 98 | 3.61e-12 | 67.0 |
| Msa0051290 | AT3G06160.2 | 34.444 | 90 | 57 | 1 | 22 | 111 | 70 | 157 | 4.62e-12 | 67.0 |
| Msa0051290 | AT1G49475.1 | 36.264 | 91 | 57 | 1 | 22 | 112 | 34 | 123 | 1.79e-11 | 63.2 |
| Msa0051290 | AT3G53310.1 | 36.709 | 79 | 50 | 0 | 34 | 112 | 22 | 100 | 3.09e-11 | 63.9 |
| Msa0051290 | AT3G18960.2 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 6.65e-11 | 61.6 |
Find 98 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGATAATAACATTAAATT+TGG | 0.154377 | 1_2:-5393100 | Msa0051290:CDS |
| CACAGACTTGTTTGTGTCCT+TGG | 0.171497 | 1_2:+5394310 | None:intergenic |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_2:+5394564 | None:intergenic |
| ACCTGAGTGTTCTTTGTTAC+AGG | 0.205520 | 1_2:+5394082 | None:intergenic |
| GTGATGCAAGTTCATATATC+TGG | 0.223627 | 1_2:-5393043 | Msa0051290:CDS |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_2:-5394578 | Msa0051290:CDS |
| CGGTGGTGCTATGAAGAAAT+TGG | 0.266641 | 1_2:+5395634 | None:intergenic |
| CAAGAACGTTAGCAGGTAAA+TGG | 0.276363 | 1_2:+5392950 | None:intergenic |
| GTGATGATGATACAGCTAAT+TGG | 0.290978 | 1_2:+5392823 | None:intergenic |
| CTTGGGAGGAAGAGATTTAC+TGG | 0.300092 | 1_2:-5395683 | Msa0051290:CDS |
| GAAGGTCTTGACCAGCAAAA+TGG | 0.302980 | 1_2:-5393010 | Msa0051290:CDS |
| TTATGAGAAGTAGCTGCTTT+TGG | 0.305223 | 1_2:+5394125 | None:intergenic |
| ACAAGCGTAAATTTATTAAC+AGG | 0.306921 | 1_2:+5394158 | None:intergenic |
| ACCATTCTCCCTTTAGCATA+TGG | 0.319123 | 1_2:+5393190 | None:intergenic |
| TGAAATGGATGAACTGAAAA+TGG | 0.343707 | 1_2:+5395658 | None:intergenic |
| TATCAATGTTTCACGTACTA+TGG | 0.347323 | 1_2:-5393462 | Msa0051290:intron |
| AATCTCTTCCTCCCAAGATT+TGG | 0.351389 | 1_2:+5395689 | None:intergenic |
| AATTGGGAGGGAGCTGCAAC+AGG | 0.351758 | 1_2:+5394203 | None:intergenic |
| ACTGGTCTCCGTTTAGCATA+TGG | 0.355660 | 1_2:+5393157 | None:intergenic |
| TACAAGTTGTTGTTGAAAAT+CGG | 0.364741 | 1_2:+5395614 | None:intergenic |
| CTCTCTACTTCTCTTTGAAA+TGG | 0.367474 | 1_2:-5395721 | Msa0051290:exon |
| CGCCATTGTACTTGAAGAAA+AGG | 0.367579 | 1_2:+5394444 | None:intergenic |
| TCTTCCTCGTGAACTGTTGA+AGG | 0.369672 | 1_2:-5395791 | Msa0051290:five_prime_UTR |
| GCATCAGCCATGCACTTCTC+AGG | 0.387871 | 1_2:+5394242 | None:intergenic |
| TTTCTATTCATATATATAAG+AGG | 0.394481 | 1_2:+5395852 | None:intergenic |
| TGTGCAGCAGAGAAATGATA+TGG | 0.401325 | 1_2:+5393283 | None:intergenic |
| CTCCGTTTAGCATATGGGTT+GGG | 0.407591 | 1_2:+5393163 | None:intergenic |
| CCATTCTCCCTTTAGCATAT+GGG | 0.409340 | 1_2:+5393191 | None:intergenic |
| GCAGCTCCCTCCCAATTAAC+TGG | 0.410875 | 1_2:-5394197 | Msa0051290:CDS |
| TCATAAGAGAGCACATGATT+TGG | 0.411083 | 1_2:-5394108 | Msa0051290:CDS |
| TTTGTTAAAATATTTAAAAC+CGG | 0.417027 | 1_2:-5393488 | Msa0051290:CDS |
| AAGGTCTTGACCAGCAAAAT+GGG | 0.444958 | 1_2:-5393009 | Msa0051290:CDS |
| TGGTAGGAAGCACCAAATCT+TGG | 0.448666 | 1_2:-5395701 | Msa0051290:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.454776 | 1_2:+5393502 | None:intergenic |
| TATGAAGAAATTGGGTGAAA+TGG | 0.456523 | 1_2:+5395643 | None:intergenic |
| GACACTGTTTACTTCACAAA+CGG | 0.464277 | 1_2:-5394512 | Msa0051290:CDS |
| CTGGTCTCCGTTTAGCATAT+GGG | 0.464781 | 1_2:+5393158 | None:intergenic |
| GAAAAGAGGAGGTAAATGAT+TGG | 0.467251 | 1_2:+5393516 | None:intergenic |
| TGATGATGATACAGCTAATT+GGG | 0.467582 | 1_2:+5392824 | None:intergenic |
| TGATGCAAGTTCATATATCT+GGG | 0.470555 | 1_2:-5393042 | Msa0051290:CDS |
| GGTAGGAAGCACCAAATCTT+GGG | 0.471144 | 1_2:-5395700 | Msa0051290:CDS |
| AAAGAGAAGTAGAGAGAGAG+AGG | 0.473700 | 1_2:+5395728 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_2:+5394565 | None:intergenic |
| AACCCAACCCATATGCTAAA+CGG | 0.481333 | 1_2:-5393165 | Msa0051290:CDS |
| AACTCCATCCCATATGCTAA+AGG | 0.483606 | 1_2:-5393199 | Msa0051290:CDS |
| TCAAAGGACAAAGCTAAAGT+AGG | 0.487427 | 1_2:+5395759 | None:intergenic |
| CCCATATGCTAAAGGGAGAA+TGG | 0.493925 | 1_2:-5393191 | Msa0051290:CDS |
| CCTCCCAATTAACTGGCAAA+AGG | 0.496383 | 1_2:-5394190 | Msa0051290:CDS |
| AATAAATTTACGCTTGTCCT+CGG | 0.500280 | 1_2:-5394152 | Msa0051290:CDS |
| TCTCCGTTTAGCATATGGGT+TGG | 0.500425 | 1_2:+5393162 | None:intergenic |
| TTGGGAGGGAGCTGCAACAG+GGG | 0.501107 | 1_2:+5394205 | None:intergenic |
| CTTGACCAGCAAAATGGGAA+TGG | 0.504154 | 1_2:-5393004 | Msa0051290:CDS |
| CTTCCTCGTGAACTGTTGAA+GGG | 0.506288 | 1_2:-5395790 | Msa0051290:five_prime_UTR |
| ACTCCATCCCATATGCTAAA+GGG | 0.506467 | 1_2:-5393198 | Msa0051290:CDS |
| TTGACCAGCAAAATGGGAAT+GGG | 0.509143 | 1_2:-5393003 | Msa0051290:CDS |
| AAAAGAGGAGGTAAATGATT+GGG | 0.509472 | 1_2:+5393517 | None:intergenic |
| GCAATTCAAGAGGTGAATGT+TGG | 0.513680 | 1_2:-5393228 | Msa0051290:CDS |
| GGTCATGCTCAAACCGAACA+AGG | 0.526750 | 1_2:-5394344 | Msa0051290:CDS |
| CTACTTCTCTTTGAAATGGT+AGG | 0.527392 | 1_2:-5395717 | Msa0051290:exon |
| TAAGAGAGCACATGATTTGG+TGG | 0.528009 | 1_2:-5394105 | Msa0051290:CDS |
| CAAGTTCATATATCTGGGGT+TGG | 0.532218 | 1_2:-5393037 | Msa0051290:CDS |
| CATCAGCCATGCACTTCTCA+GGG | 0.533895 | 1_2:+5394243 | None:intergenic |
| GAGAGAGGGAAAGGGTTCAA+AGG | 0.534422 | 1_2:+5395743 | None:intergenic |
| AATGTTATTATCACGAACAA+AGG | 0.534520 | 1_2:+5393108 | None:intergenic |
| ATATCTGGGGTTGGAAAGGA+AGG | 0.539398 | 1_2:-5393028 | Msa0051290:CDS |
| TCATATATCTGGGGTTGGAA+AGG | 0.547674 | 1_2:-5393032 | Msa0051290:CDS |
| GCATCCATCGTGCATAGATG+TGG | 0.553217 | 1_2:-5393563 | Msa0051290:CDS |
| TCACAAACAAGAACGTTAGC+AGG | 0.554809 | 1_2:+5392943 | None:intergenic |
| GGAGGGAGCTGCAACAGGGG+TGG | 0.557934 | 1_2:+5394208 | None:intergenic |
| TGGACTTAGTTTCTGTGAGA+AGG | 0.559379 | 1_2:-5394393 | Msa0051290:CDS |
| GGTGGTGCTATGAAGAAATT+GGG | 0.559533 | 1_2:+5395635 | None:intergenic |
| CAAAGGACAAAGCTAAAGTA+GGG | 0.561608 | 1_2:+5395760 | None:intergenic |
| AAGAGAAGTAGAGAGAGAGA+GGG | 0.576986 | 1_2:+5395729 | None:intergenic |
| TGCTTCCCCTGAGAAGTGCA+TGG | 0.578286 | 1_2:-5394249 | Msa0051290:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578782 | 1_2:+5394554 | None:intergenic |
| GTTACGCTTCGCAATTCAAG+AGG | 0.584227 | 1_2:-5393238 | Msa0051290:CDS |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 1_2:+5393505 | None:intergenic |
| GTCATGCTCAAACCGAACAA+GGG | 0.590087 | 1_2:-5394343 | Msa0051290:CDS |
| TCTCCCTTTAGCATATGGGA+TGG | 0.591297 | 1_2:+5393195 | None:intergenic |
| CTGTTTACTTCACAAACGGT+TGG | 0.594993 | 1_2:-5394508 | Msa0051290:CDS |
| ATTGGGAGGGAGCTGCAACA+GGG | 0.596413 | 1_2:+5394204 | None:intergenic |
| ACGTGAAACATTGATATCGC+CGG | 0.611796 | 1_2:+5393469 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_2:-5394559 | Msa0051290:CDS |
| CATCCATCGTGCATAGATGT+GGG | 0.626633 | 1_2:-5393562 | Msa0051290:CDS |
| CATCGTGCATAGATGTGGGA+AGG | 0.628421 | 1_2:-5393558 | Msa0051290:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_2:-5394569 | Msa0051290:CDS |
| TCATGCTCAAACCGAACAAG+GGG | 0.635196 | 1_2:-5394342 | Msa0051290:CDS |
| CAGTTCACGAGGAAGATGAA+AGG | 0.657063 | 1_2:+5395798 | None:intergenic |
| AAGTTGTTGTTGAAAATCGG+TGG | 0.662291 | 1_2:+5395617 | None:intergenic |
| AGGAAGCACCAAATCTTGGG+AGG | 0.669254 | 1_2:-5395697 | Msa0051290:CDS |
| AAACCCTTCAACAGTTCACG+AGG | 0.670720 | 1_2:+5395787 | None:intergenic |
| CTTCCCACATCTATGCACGA+TGG | 0.671357 | 1_2:+5393559 | None:intergenic |
| GCCTGTAACAAAGAACACTC+AGG | 0.672455 | 1_2:-5394083 | Msa0051290:intron |
| CGACATGAACTGAAATGCAG+CGG | 0.675891 | 1_2:+5392763 | None:intergenic |
| CAAGGACACAAACAAGTCTG+TGG | 0.678532 | 1_2:-5394309 | Msa0051290:CDS |
| ATCAGCCATGCACTTCTCAG+GGG | 0.683978 | 1_2:+5394244 | None:intergenic |
| CATGCTCAAACCGAACAAGG+GGG | 0.761893 | 1_2:-5394341 | Msa0051290:CDS |
| GATGCAAGTTCATATATCTG+GGG | 0.765392 | 1_2:-5393041 | Msa0051290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAACAAAATTTAAA+AGG | + | chr1_2:5393183-5393202 | None:intergenic | 10.0% |
| !! | ATAATTAAGTAAATTGTTTA+AGG | - | chr1_2:5393404-5393423 | Msa0051290:intron | 10.0% |
| !! | CAAAAAAAAAAAATTGAAAA+AGG | + | chr1_2:5394586-5394605 | None:intergenic | 10.0% |
| !! | TTATAATTAATACTAGTAAA+AGG | + | chr1_2:5394794-5394813 | None:intergenic | 10.0% |
| !!! | TTTGTTAAAATATTTAAAAC+CGG | - | chr1_2:5395141-5395160 | Msa0051290:intron | 10.0% |
| !! | TTTCTATTCATATATATAAG+AGG | + | chr1_2:5392780-5392799 | None:intergenic | 15.0% |
| !!! | TTCATTTTTAATTTTCAACA+TGG | + | chr1_2:5393069-5393088 | None:intergenic | 15.0% |
| !! | GTATAAAATATAAAAAACCA+TGG | + | chr1_2:5393286-5393305 | None:intergenic | 15.0% |
| !! | AATAAAATTGTTAATTAACG+TGG | - | chr1_2:5393553-5393572 | Msa0051290:CDS | 15.0% |
| !! | AAAAAAAAAATTGAAAAAGG+AGG | + | chr1_2:5394583-5394602 | None:intergenic | 15.0% |
| !!! | AATCATCAGTTTTAAATAAA+AGG | + | chr1_2:5395023-5395042 | None:intergenic | 15.0% |
| !! | CAAAAATTACTTAAAGATAA+GGG | + | chr1_2:5395253-5395272 | None:intergenic | 15.0% |
| !! | ACAAAAATTACTTAAAGATA+AGG | + | chr1_2:5395254-5395273 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTCAACATGGT+AGG | + | chr1_2:5393065-5393084 | None:intergenic | 20.0% |
| !! | ACAAACAAAATTTAAAAGGT+GGG | + | chr1_2:5393179-5393198 | None:intergenic | 20.0% |
| !! | AACAAACAAAATTTAAAAGG+TGG | + | chr1_2:5393180-5393199 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr1_2:5393689-5393708 | Msa0051290:intron | 20.0% |
| !! | AATAATTATGTTTAGCTGTT+AGG | - | chr1_2:5393900-5393919 | Msa0051290:intron | 20.0% |
| !!! | GAAATTTGTATTTTAATTGC+AGG | - | chr1_2:5393987-5394006 | Msa0051290:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_2:5394018-5394037 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTTTAATCTTTGA+TGG | - | chr1_2:5394216-5394235 | Msa0051290:CDS | 20.0% |
| !! | ATTAATACTAGTAAAAGGAA+GGG | + | chr1_2:5394789-5394808 | None:intergenic | 20.0% |
| !! | AATTAATACTAGTAAAAGGA+AGG | + | chr1_2:5394790-5394809 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1_2:5395130-5395149 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATTATT+GGG | + | chr1_2:5395227-5395246 | None:intergenic | 20.0% |
| !! | CGTGATAATAACATTAAATT+TGG | - | chr1_2:5395529-5395548 | Msa0051290:intron | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+CGG | + | chr1_2:5393018-5393037 | None:intergenic | 25.0% |
| !!! | AAAGTTTTCATTTTTTGCCA+TGG | - | chr1_2:5393266-5393285 | Msa0051290:CDS | 25.0% |
| !! | AAATTGTTTAAGGTTCTGTT+TGG | - | chr1_2:5393414-5393433 | Msa0051290:intron | 25.0% |
| !! | AATTGTTTAAGGTTCTGTTT+GGG | - | chr1_2:5393415-5393434 | Msa0051290:intron | 25.0% |
| ! | TACAGTGTAATTATATGTGT+CGG | + | chr1_2:5393664-5393683 | None:intergenic | 25.0% |
| ! | TGAGATTAAAACATACATTG+AGG | + | chr1_2:5393963-5393982 | None:intergenic | 25.0% |
| !!! | ATGTATGTTTTAATCTCAGA+TGG | - | chr1_2:5393965-5393984 | Msa0051290:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | - | chr1_2:5394264-5394283 | Msa0051290:CDS | 25.0% |
| ! | ACAAGCGTAAATTTATTAAC+AGG | + | chr1_2:5394474-5394493 | None:intergenic | 25.0% |
| !! | TAAGCTCTGACATAAATATA+AGG | + | chr1_2:5394999-5395018 | None:intergenic | 25.0% |
| ! | GTAAATGAAGAATCACAAAA+GGG | + | chr1_2:5395202-5395221 | None:intergenic | 25.0% |
| ! | GAGAGATAAAACAACATTAT+TGG | + | chr1_2:5395228-5395247 | None:intergenic | 25.0% |
| ! | AATGTTATTATCACGAACAA+AGG | + | chr1_2:5395524-5395543 | None:intergenic | 25.0% |
| !! | ACAGAAATCAATTTTCAATG+TGG | - | chr1_2:5395710-5395729 | Msa0051290:exon | 25.0% |
| TGAAATGGATGAACTGAAAA+TGG | + | chr1_2:5392974-5392993 | None:intergenic | 30.0% | |
| TATGAAGAAATTGGGTGAAA+TGG | + | chr1_2:5392989-5393008 | None:intergenic | 30.0% | |
| CTAATATGAACACTTCAGAA+GGG | + | chr1_2:5393093-5393112 | None:intergenic | 30.0% | |
| ! | GAAGTGTTCATATTAGGATT+TGG | - | chr1_2:5393097-5393116 | Msa0051290:CDS | 30.0% |
| ATTTACACAGATAGTGTTTG+CGG | + | chr1_2:5393513-5393532 | None:intergenic | 30.0% | |
| CATTAATGACCAATGAAGTA+CGG | - | chr1_2:5393576-5393595 | Msa0051290:intron | 30.0% | |
| ACTATATTACAACTGTGTGA+GGG | - | chr1_2:5393765-5393784 | Msa0051290:intron | 30.0% | |
| AATTTGAACTTTGTACCTTG+AGG | - | chr1_2:5393788-5393807 | Msa0051290:intron | 30.0% | |
| ACATGATTTACATACACTTG+AGG | + | chr1_2:5393847-5393866 | None:intergenic | 30.0% | |
| ! | TTCCTTTTCTTCAAGTACAA+TGG | - | chr1_2:5394183-5394202 | Msa0051290:CDS | 30.0% |
| !! | AATCAATACTGCTTTTGATG+CGG | - | chr1_2:5394347-5394366 | Msa0051290:CDS | 30.0% |
| AATAAATTTACGCTTGTCCT+CGG | - | chr1_2:5394477-5394496 | Msa0051290:CDS | 30.0% | |
| ! | CTTTGCTCTGACTTTTAAAT+GGG | + | chr1_2:5394677-5394696 | None:intergenic | 30.0% |
| AATGAAGGGAAAGGTTAAAA+TGG | + | chr1_2:5394889-5394908 | None:intergenic | 30.0% | |
| !! | AGAAAAGTATCAGTTTGCTA+GGG | + | chr1_2:5394951-5394970 | None:intergenic | 30.0% |
| AACTGTTCAATTTCTTACAG+AGG | - | chr1_2:5395044-5395063 | Msa0051290:intron | 30.0% | |
| AAAAGAGGAGGTAAATGATT+GGG | + | chr1_2:5395115-5395134 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr1_2:5395127-5395146 | None:intergenic | 30.0% | |
| TATCAATGTTTCACGTACTA+TGG | - | chr1_2:5395167-5395186 | Msa0051290:intron | 30.0% | |
| GGTAAATGAAGAATCACAAA+AGG | + | chr1_2:5395203-5395222 | None:intergenic | 30.0% | |
| GATAAAACAACATTATTGGG+AGG | + | chr1_2:5395224-5395243 | None:intergenic | 30.0% | |
| TGATGCAAGTTCATATATCT+GGG | - | chr1_2:5395587-5395606 | Msa0051290:intron | 30.0% | |
| ! | TGATGATGATACAGCTAATT+GGG | + | chr1_2:5395808-5395827 | None:intergenic | 30.0% |
| CAAAGGACAAAGCTAAAGTA+GGG | + | chr1_2:5392872-5392891 | None:intergenic | 35.0% | |
| TCAAAGGACAAAGCTAAAGT+AGG | + | chr1_2:5392873-5392892 | None:intergenic | 35.0% | |
| ! | CTCTCTACTTCTCTTTGAAA+TGG | - | chr1_2:5392908-5392927 | Msa0051290:three_prime_UTR | 35.0% |
| !! | CTACTTCTCTTTGAAATGGT+AGG | - | chr1_2:5392912-5392931 | Msa0051290:three_prime_UTR | 35.0% |
| ! | AAGTTGTTGTTGAAAATCGG+TGG | + | chr1_2:5393015-5393034 | None:intergenic | 35.0% |
| CCTAATATGAACACTTCAGA+AGG | + | chr1_2:5393094-5393113 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTGTTCATATT+AGG | - | chr1_2:5393091-5393110 | Msa0051290:CDS | 35.0% |
| ! | GCTGTTCATTATTCTTTTCC+TGG | - | chr1_2:5393485-5393504 | Msa0051290:CDS | 35.0% |
| !! | TTATATGTGTCGGTGTCTTT+TGG | + | chr1_2:5393654-5393673 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+TGG | - | chr1_2:5393695-5393714 | Msa0051290:intron | 35.0% | |
| ATAGTCATGACTATGAAGCA+CGG | + | chr1_2:5393750-5393769 | None:intergenic | 35.0% | |
| GACTATATTACAACTGTGTG+AGG | - | chr1_2:5393764-5393783 | Msa0051290:intron | 35.0% | |
| GACACTGTTTACTTCACAAA+CGG | - | chr1_2:5394117-5394136 | Msa0051290:CDS | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | - | chr1_2:5394255-5394274 | Msa0051290:CDS | 35.0% |
| !! | ATCAATACTGCTTTTGATGC+GGG | - | chr1_2:5394348-5394367 | Msa0051290:CDS | 35.0% |
| ! | GATCCTTTTGCCAGTTAATT+GGG | + | chr1_2:5394445-5394464 | None:intergenic | 35.0% |
| ! | TGATCCTTTTGCCAGTTAAT+TGG | + | chr1_2:5394446-5394465 | None:intergenic | 35.0% |
| !! | TTATGAGAAGTAGCTGCTTT+TGG | + | chr1_2:5394507-5394526 | None:intergenic | 35.0% |
| ! | TCATAAGAGAGCACATGATT+TGG | - | chr1_2:5394521-5394540 | Msa0051290:CDS | 35.0% |
| ! | GCTTTGCTCTGACTTTTAAA+TGG | + | chr1_2:5394678-5394697 | None:intergenic | 35.0% |
| TAAAAGGAAGGGAAAGACTT+AGG | + | chr1_2:5394778-5394797 | None:intergenic | 35.0% | |
| TTTAACCTTTCCCTTCATTC+TGG | - | chr1_2:5394890-5394909 | Msa0051290:intron | 35.0% | |
| TTAACCTTTCCCTTCATTCT+GGG | - | chr1_2:5394891-5394910 | Msa0051290:intron | 35.0% | |
| !!! | TTTTTGAGACCCAGAATGAA+GGG | + | chr1_2:5394903-5394922 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGACCCAGAATGA+AGG | + | chr1_2:5394904-5394923 | None:intergenic | 35.0% |
| !! | CAGAAAAGTATCAGTTTGCT+AGG | + | chr1_2:5394952-5394971 | None:intergenic | 35.0% |
| GAAAAGAGGAGGTAAATGAT+TGG | + | chr1_2:5395116-5395135 | None:intergenic | 35.0% | |
| ! | TAACTTCTGTTTTGCAGTCA+GGG | + | chr1_2:5395375-5395394 | None:intergenic | 35.0% |
| GTGATGCAAGTTCATATATC+TGG | - | chr1_2:5395586-5395605 | Msa0051290:intron | 35.0% | |
| GATGCAAGTTCATATATCTG+GGG | - | chr1_2:5395588-5395607 | Msa0051290:intron | 35.0% | |
| ! | GTGATGATGATACAGCTAAT+TGG | + | chr1_2:5395809-5395828 | None:intergenic | 35.0% |
| AAGAGAAGTAGAGAGAGAGA+GGG | + | chr1_2:5392903-5392922 | None:intergenic | 40.0% | |
| AAAGAGAAGTAGAGAGAGAG+AGG | + | chr1_2:5392904-5392923 | None:intergenic | 40.0% | |
| AATCTCTTCCTCCCAAGATT+TGG | + | chr1_2:5392943-5392962 | None:intergenic | 40.0% | |
| !! | GGTGGTGCTATGAAGAAATT+GGG | + | chr1_2:5392997-5393016 | None:intergenic | 40.0% |
| AATGAAGTACGGACACTTCT+CGG | - | chr1_2:5393587-5393606 | Msa0051290:intron | 40.0% | |
| !! | GACTTAGCTTTGTAACCTCA+AGG | + | chr1_2:5393806-5393825 | None:intergenic | 40.0% |
| !! | GTGAAGAGCGTAACAGATTT+TGG | + | chr1_2:5393941-5393960 | None:intergenic | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1_2:5394054-5394073 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1_2:5394051-5394070 | Msa0051290:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1_2:5394067-5394086 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1_2:5394078-5394097 | None:intergenic | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | - | chr1_2:5394121-5394140 | Msa0051290:CDS | 40.0% | |
| CGCCATTGTACTTGAAGAAA+AGG | + | chr1_2:5394188-5394207 | None:intergenic | 40.0% | |
| TGGACTTAGTTTCTGTGAGA+AGG | - | chr1_2:5394236-5394255 | Msa0051290:CDS | 40.0% | |
| ! | CTTTTGCCAGTTAATTGGGA+GGG | + | chr1_2:5394441-5394460 | None:intergenic | 40.0% |
| ! | TAAGAGAGCACATGATTTGG+TGG | - | chr1_2:5394524-5394543 | Msa0051290:CDS | 40.0% |
| ACCTGAGTGTTCTTTGTTAC+AGG | + | chr1_2:5394550-5394569 | None:intergenic | 40.0% | |
| ! | TCTGACTTTTAAATGGGACC+CGG | + | chr1_2:5394671-5394690 | None:intergenic | 40.0% |
| ! | AGTCAGAGCAAAGCTTTGTA+TGG | - | chr1_2:5394684-5394703 | Msa0051290:intron | 40.0% |
| AAGGGAAAGACTTAGGACTT+TGG | + | chr1_2:5394771-5394790 | None:intergenic | 40.0% | |
| TAAAATGGAGAGGAGCTTGT+TGG | + | chr1_2:5394874-5394893 | None:intergenic | 40.0% | |
| AGGGAAAGGTTAAAATGGAG+AGG | + | chr1_2:5394884-5394903 | None:intergenic | 40.0% | |
| ACGTGAAACATTGATATCGC+CGG | + | chr1_2:5395163-5395182 | None:intergenic | 40.0% | |
| ATCTGCTTGACAAACTGATC+TGG | - | chr1_2:5395282-5395301 | Msa0051290:intron | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | + | chr1_2:5395349-5395368 | None:intergenic | 40.0% | |
| ! | GTAACTTCTGTTTTGCAGTC+AGG | + | chr1_2:5395376-5395395 | None:intergenic | 40.0% |
| GCAATTCAAGAGGTGAATGT+TGG | - | chr1_2:5395401-5395420 | Msa0051290:intron | 40.0% | |
| AACTCCATCCCATATGCTAA+AGG | - | chr1_2:5395430-5395449 | Msa0051290:intron | 40.0% | |
| ACTCCATCCCATATGCTAAA+GGG | - | chr1_2:5395431-5395450 | Msa0051290:intron | 40.0% | |
| CCATTCTCCCTTTAGCATAT+GGG | + | chr1_2:5395441-5395460 | None:intergenic | 40.0% | |
| ACCATTCTCCCTTTAGCATA+TGG | + | chr1_2:5395442-5395461 | None:intergenic | 40.0% | |
| AACCCAACCCATATGCTAAA+CGG | - | chr1_2:5395464-5395483 | Msa0051290:intron | 40.0% | |
| ! | CAAGTTCATATATCTGGGGT+TGG | - | chr1_2:5395592-5395611 | Msa0051290:intron | 40.0% |
| ! | TCATATATCTGGGGTTGGAA+AGG | - | chr1_2:5395597-5395616 | Msa0051290:intron | 40.0% |
| AAGGTCTTGACCAGCAAAAT+GGG | - | chr1_2:5395620-5395639 | Msa0051290:CDS | 40.0% | |
| TTGACCAGCAAAATGGGAAT+GGG | - | chr1_2:5395626-5395645 | Msa0051290:CDS | 40.0% | |
| CAAGAACGTTAGCAGGTAAA+TGG | + | chr1_2:5395682-5395701 | None:intergenic | 40.0% | |
| TCACAAACAAGAACGTTAGC+AGG | + | chr1_2:5395689-5395708 | None:intergenic | 40.0% | |
| CAGTTCACGAGGAAGATGAA+AGG | + | chr1_2:5392834-5392853 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACTGTTGA+AGG | - | chr1_2:5392838-5392857 | Msa0051290:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACTGTTGAA+GGG | - | chr1_2:5392839-5392858 | Msa0051290:three_prime_UTR | 45.0% | |
| AAACCCTTCAACAGTTCACG+AGG | + | chr1_2:5392845-5392864 | None:intergenic | 45.0% | |
| AGTAGAGAGAGAGAGGGAAA+GGG | + | chr1_2:5392897-5392916 | None:intergenic | 45.0% | |
| AAGTAGAGAGAGAGAGGGAA+AGG | + | chr1_2:5392898-5392917 | None:intergenic | 45.0% | |
| !! | TGGTAGGAAGCACCAAATCT+TGG | - | chr1_2:5392928-5392947 | Msa0051290:three_prime_UTR | 45.0% |
| !! | GGTAGGAAGCACCAAATCTT+GGG | - | chr1_2:5392929-5392948 | Msa0051290:three_prime_UTR | 45.0% |
| CTTGGGAGGAAGAGATTTAC+TGG | - | chr1_2:5392946-5392965 | Msa0051290:three_prime_UTR | 45.0% | |
| !! | CGGTGGTGCTATGAAGAAAT+TGG | + | chr1_2:5392998-5393017 | None:intergenic | 45.0% |
| GTTCTGTTTGGGAGTTTGCA+AGG | - | chr1_2:5393426-5393445 | Msa0051290:intron | 45.0% | |
| TGTTTGGGAGTTTGCAAGGA+GGG | - | chr1_2:5393430-5393449 | Msa0051290:intron | 45.0% | |
| !! | GAGAAGTGTCCGTACTTCAT+TGG | + | chr1_2:5393588-5393607 | None:intergenic | 45.0% |
| TGACTATGAAGCACGGACAT+CGG | + | chr1_2:5393743-5393762 | None:intergenic | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1_2:5394068-5394087 | None:intergenic | 45.0% | |
| GTCATGCTCAAACCGAACAA+GGG | - | chr1_2:5394286-5394305 | Msa0051290:CDS | 45.0% | |
| TCATGCTCAAACCGAACAAG+GGG | - | chr1_2:5394287-5394306 | Msa0051290:CDS | 45.0% | |
| ! | CACAGACTTGTTTGTGTCCT+TGG | + | chr1_2:5394322-5394341 | None:intergenic | 45.0% |
| CAAGGACACAAACAAGTCTG+TGG | - | chr1_2:5394320-5394339 | Msa0051290:CDS | 45.0% | |
| ! | CCTTTTGCCAGTTAATTGGG+AGG | + | chr1_2:5394442-5394461 | None:intergenic | 45.0% |
| CCTCCCAATTAACTGGCAAA+AGG | - | chr1_2:5394439-5394458 | Msa0051290:CDS | 45.0% | |
| !!! | TAGCTGCTTTTGGTAATCCG+AGG | + | chr1_2:5394497-5394516 | None:intergenic | 45.0% |
| GCCTGTAACAAAGAACACTC+AGG | - | chr1_2:5394546-5394565 | Msa0051290:CDS | 45.0% | |
| ! | CTGACTTTTAAATGGGACCC+GGG | + | chr1_2:5394670-5394689 | None:intergenic | 45.0% |
| ! | TGGCAGGTTAGTTAGAGAGA+AGG | + | chr1_2:5394854-5394873 | None:intergenic | 45.0% |
| CATCCATCGTGCATAGATGT+GGG | - | chr1_2:5395067-5395086 | Msa0051290:intron | 45.0% | |
| GCTTGACAAACTGATCTGGT+TGG | - | chr1_2:5395286-5395305 | Msa0051290:intron | 45.0% | |
| GTTACGCTTCGCAATTCAAG+AGG | - | chr1_2:5395391-5395410 | Msa0051290:intron | 45.0% | |
| TCTCCCTTTAGCATATGGGA+TGG | + | chr1_2:5395437-5395456 | None:intergenic | 45.0% | |
| CCCATATGCTAAAGGGAGAA+TGG | - | chr1_2:5395438-5395457 | Msa0051290:intron | 45.0% | |
| CTCCGTTTAGCATATGGGTT+GGG | + | chr1_2:5395469-5395488 | None:intergenic | 45.0% | |
| TCTCCGTTTAGCATATGGGT+TGG | + | chr1_2:5395470-5395489 | None:intergenic | 45.0% | |
| CTGGTCTCCGTTTAGCATAT+GGG | + | chr1_2:5395474-5395493 | None:intergenic | 45.0% | |
| ! | ACTGGTCTCCGTTTAGCATA+TGG | + | chr1_2:5395475-5395494 | None:intergenic | 45.0% |
| ! | AGACCAGTTCACACCTTTTG+TGG | - | chr1_2:5395487-5395506 | Msa0051290:intron | 45.0% |
| ! | GACCAGTTCACACCTTTTGT+GGG | - | chr1_2:5395488-5395507 | Msa0051290:intron | 45.0% |
| ! | ACCAGTTCACACCTTTTGTG+GGG | - | chr1_2:5395489-5395508 | Msa0051290:intron | 45.0% |
| ! | ATATCTGGGGTTGGAAAGGA+AGG | - | chr1_2:5395601-5395620 | Msa0051290:intron | 45.0% |
| GAAGGTCTTGACCAGCAAAA+TGG | - | chr1_2:5395619-5395638 | Msa0051290:CDS | 45.0% | |
| CTTGACCAGCAAAATGGGAA+TGG | - | chr1_2:5395625-5395644 | Msa0051290:CDS | 45.0% | |
| ! | GTTTCCCATTCCCATTTTGC+TGG | + | chr1_2:5395633-5395652 | None:intergenic | 45.0% |
| !!! | TTAAATATTTTAACAAAATA+TGG | + | chr1_2:5395138-5395157 | None:intergenic | 5.0% |
| GAGAGAGGGAAAGGGTTCAA+AGG | + | chr1_2:5392889-5392908 | None:intergenic | 50.0% | |
| !! | AGGAAGCACCAAATCTTGGG+AGG | - | chr1_2:5392932-5392951 | Msa0051290:three_prime_UTR | 50.0% |
| CTGTTTGGGAGTTTGCAAGG+AGG | - | chr1_2:5393429-5393448 | Msa0051290:intron | 50.0% | |
| GTTTGGGAGTTTGCAAGGAG+GGG | - | chr1_2:5393431-5393450 | Msa0051290:intron | 50.0% | |
| GAGTTTGCAAGGAGGGGATA+AGG | - | chr1_2:5393437-5393456 | Msa0051290:intron | 50.0% | |
| CAGATAGTGTTTGCGGAACC+AGG | + | chr1_2:5393506-5393525 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1_2:5394060-5394079 | Msa0051290:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_2:5394070-5394089 | Msa0051290:intron | 50.0% | |
| GGTCATGCTCAAACCGAACA+AGG | - | chr1_2:5394285-5394304 | Msa0051290:CDS | 50.0% | |
| CATGCTCAAACCGAACAAGG+GGG | - | chr1_2:5394288-5394307 | Msa0051290:CDS | 50.0% | |
| !! | AACCGAACAAGGGGGTATCA+AGG | - | chr1_2:5394296-5394315 | Msa0051290:CDS | 50.0% |
| !! | TACTGCTTTTGATGCGGGTG+TGG | - | chr1_2:5394353-5394372 | Msa0051290:CDS | 50.0% |
| ATCAGCCATGCACTTCTCAG+GGG | + | chr1_2:5394388-5394407 | None:intergenic | 50.0% | |
| CATCAGCCATGCACTTCTCA+GGG | + | chr1_2:5394389-5394408 | None:intergenic | 50.0% | |
| AATACTCTGTCTCCAGCCCA+AGG | - | chr1_2:5394609-5394628 | Msa0051290:CDS | 50.0% | |
| !! | CCTCGGATTAGTCAGTCCTT+GGG | + | chr1_2:5394628-5394647 | None:intergenic | 50.0% |
| CCAAGGACTGACTAATCCGA+GGG | - | chr1_2:5394626-5394645 | Msa0051290:intron | 50.0% | |
| CAAGGACTGACTAATCCGAG+GGG | - | chr1_2:5394627-5394646 | Msa0051290:intron | 50.0% | |
| ! | ACTTTTAAATGGGACCCGGG+TGG | + | chr1_2:5394667-5394686 | None:intergenic | 50.0% |
| !! | ATGGACTAGCCCACCAAAGT+TGG | - | chr1_2:5394703-5394722 | Msa0051290:intron | 50.0% |
| ATCAAACCGGAGACCTTGAG+AGG | - | chr1_2:5394737-5394756 | Msa0051290:intron | 50.0% | |
| ! | TTTGGAGTGTGCTCCTCTCA+AGG | + | chr1_2:5394753-5394772 | None:intergenic | 50.0% |
| GAGACCCAGAATGAAGGGAA+AGG | + | chr1_2:5394898-5394917 | None:intergenic | 50.0% | |
| GCATCCATCGTGCATAGATG+TGG | - | chr1_2:5395066-5395085 | Msa0051290:intron | 50.0% | |
| CTTCCCACATCTATGCACGA+TGG | + | chr1_2:5395073-5395092 | None:intergenic | 50.0% | |
| CATCGTGCATAGATGTGGGA+AGG | - | chr1_2:5395071-5395090 | Msa0051290:intron | 50.0% | |
| ! | CCAGTTCACACCTTTTGTGG+GGG | - | chr1_2:5395490-5395509 | Msa0051290:intron | 50.0% |
| ! | TTCACACCTTTTGTGGGGGT+TGG | - | chr1_2:5395494-5395513 | Msa0051290:intron | 50.0% |
| ! | TCACACCTTTTGTGGGGGTT+GGG | - | chr1_2:5395495-5395514 | Msa0051290:intron | 50.0% |
| !! | GTGTCGGTGTCTTTTGGCGT+CGG | + | chr1_2:5393648-5393667 | None:intergenic | 55.0% |
| ! | CACTTGAGGTGCTAGCTCAG+TGG | + | chr1_2:5393833-5393852 | None:intergenic | 55.0% |
| GGCCTTGATACCCCCTTGTT+CGG | + | chr1_2:5394301-5394320 | None:intergenic | 55.0% | |
| !! | ACAAGGGGGTATCAAGGCCA+AGG | - | chr1_2:5394302-5394321 | Msa0051290:CDS | 55.0% |
| ! | TGCTTCCCCTGAGAAGTGCA+TGG | - | chr1_2:5394380-5394399 | Msa0051290:CDS | 55.0% |
| GCATCAGCCATGCACTTCTC+AGG | + | chr1_2:5394390-5394409 | None:intergenic | 55.0% | |
| ATTGGGAGGGAGCTGCAACA+GGG | + | chr1_2:5394428-5394447 | None:intergenic | 55.0% | |
| AATTGGGAGGGAGCTGCAAC+AGG | + | chr1_2:5394429-5394448 | None:intergenic | 55.0% | |
| GCAGCTCCCTCCCAATTAAC+TGG | - | chr1_2:5394432-5394451 | Msa0051290:CDS | 55.0% | |
| !! | GGATTAGTCAGTCCTTGGGC+TGG | + | chr1_2:5394624-5394643 | None:intergenic | 55.0% |
| CCCAAGGACTGACTAATCCG+AGG | - | chr1_2:5394625-5394644 | Msa0051290:intron | 55.0% | |
| !! | CCCTCGGATTAGTCAGTCCT+TGG | + | chr1_2:5394629-5394648 | None:intergenic | 55.0% |
| !! | ATTCCCCTCGGTGCCAACTT+TGG | + | chr1_2:5394719-5394738 | None:intergenic | 55.0% |
| ! | GTCTCCGGTTTGATTCCCCT+CGG | + | chr1_2:5394731-5394750 | None:intergenic | 55.0% |
| TGTGCTCCTCTCAAGGTCTC+CGG | + | chr1_2:5394746-5394765 | None:intergenic | 55.0% | |
| !! | ATGGAGAGGAGCTTGTTGGC+AGG | + | chr1_2:5394870-5394889 | None:intergenic | 55.0% |
| ! | CCCCCACAAAAGGTGTGAAC+TGG | + | chr1_2:5395493-5395512 | None:intergenic | 55.0% |
| ! | GAGGTGCTAGCTCAGTGGCA+AGG | + | chr1_2:5393828-5393847 | None:intergenic | 60.0% |
| TTGGGAGGGAGCTGCAACAG+GGG | + | chr1_2:5394427-5394446 | None:intergenic | 60.0% | |
| !! | CCCTCGGTGCCAACTTTGGT+GGG | + | chr1_2:5394715-5394734 | None:intergenic | 60.0% |
| ! | CCCACCAAAGTTGGCACCGA+GGG | - | chr1_2:5394712-5394731 | Msa0051290:intron | 60.0% |
| ! | CCACCAAAGTTGGCACCGAG+GGG | - | chr1_2:5394713-5394732 | Msa0051290:intron | 60.0% |
| ! | GGCACCGAGGGGAATCAAAC+CGG | - | chr1_2:5394724-5394743 | Msa0051290:intron | 60.0% |
| ! | CACCTTTTGTGGGGGTTGGG+TGG | - | chr1_2:5395498-5395517 | Msa0051290:intron | 60.0% |
| GACTGCGGGATTGGACCCCT+CGG | + | chr1_2:5394645-5394664 | None:intergenic | 65.0% | |
| GTCCAATCCCGCAGTCCACC+CGG | - | chr1_2:5394649-5394668 | Msa0051290:intron | 65.0% | |
| TCCAATCCCGCAGTCCACCC+GGG | - | chr1_2:5394650-5394669 | Msa0051290:intron | 65.0% | |
| !! | AATGGGACCCGGGTGGACTG+CGG | + | chr1_2:5394660-5394679 | None:intergenic | 65.0% |
| GCCCACCAAAGTTGGCACCG+AGG | - | chr1_2:5394711-5394730 | Msa0051290:intron | 65.0% | |
| !! | CCCCTCGGTGCCAACTTTGG+TGG | + | chr1_2:5394716-5394735 | None:intergenic | 65.0% |
| GGCCACCCAACCCCCACAAA+AGG | + | chr1_2:5395503-5395522 | None:intergenic | 65.0% | |
| GGAGGGAGCTGCAACAGGGG+TGG | + | chr1_2:5394424-5394443 | None:intergenic | 70.0% | |
| !! | ACCCGGGTGGACTGCGGGAT+TGG | + | chr1_2:5394654-5394673 | None:intergenic | 70.0% |
| !! | ATGGGACCCGGGTGGACTGC+GGG | + | chr1_2:5394659-5394678 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 5392766 | 5395885 | 5392766 | ID=Msa0051290;Name=Msa0051290 |
| chr1_2 | mRNA | 5392766 | 5395885 | 5392766 | ID=Msa0051290-mRNA-1;Parent=Msa0051290;Name=Msa0051290-mRNA-1;_AED=0.35;_eAED=0.35;_QI=161|1|1|1|1|1|4|219|372 |
| chr1_2 | exon | 5392766 | 5393311 | 5392766 | ID=Msa0051290-mRNA-1:exon:1607;Parent=Msa0051290-mRNA-1 |
| chr1_2 | exon | 5393463 | 5393587 | 5393463 | ID=Msa0051290-mRNA-1:exon:1606;Parent=Msa0051290-mRNA-1 |
| chr1_2 | exon | 5394084 | 5394642 | 5394084 | ID=Msa0051290-mRNA-1:exon:1605;Parent=Msa0051290-mRNA-1 |
| chr1_2 | exon | 5395617 | 5395885 | 5395617 | ID=Msa0051290-mRNA-1:exon:1604;Parent=Msa0051290-mRNA-1 |
| chr1_2 | five_prime_UTR | 5395725 | 5395885 | 5395725 | ID=Msa0051290-mRNA-1:five_prime_utr;Parent=Msa0051290-mRNA-1 |
| chr1_2 | CDS | 5395617 | 5395724 | 5395617 | ID=Msa0051290-mRNA-1:cds;Parent=Msa0051290-mRNA-1 |
| chr1_2 | CDS | 5394084 | 5394642 | 5394084 | ID=Msa0051290-mRNA-1:cds;Parent=Msa0051290-mRNA-1 |
| chr1_2 | CDS | 5393463 | 5393587 | 5393463 | ID=Msa0051290-mRNA-1:cds;Parent=Msa0051290-mRNA-1 |
| chr1_2 | CDS | 5392985 | 5393311 | 5392985 | ID=Msa0051290-mRNA-1:cds;Parent=Msa0051290-mRNA-1 |
| chr1_2 | three_prime_UTR | 5392766 | 5392984 | 5392766 | ID=Msa0051290-mRNA-1:three_prime_utr;Parent=Msa0051290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
