AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003000 MtrunA17_Chr1g0156031 98.529 340 4 1 1 339 1 340 0.0 699
Msa0003000 MtrunA17_Chr8g0385961 49.713 348 127 10 2 339 3 312 6.53e-104 307
Msa0003000 MtrunA17_Chr6g0479911 41.040 173 102 0 167 339 117 289 1.27e-45 157
Msa0003000 MtrunA17_Chr8g0375531 51.613 124 60 0 216 339 157 280 2.37e-42 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003000 AT5G42520.1 65.084 358 90 15 1 339 1 342 1.17e-149 425
Msa0003000 AT5G42520.2 63.966 358 90 15 1 339 1 338 1.96e-145 414
Msa0003000 AT5G42520.3 62.543 291 84 11 65 339 1 282 2.21e-116 338
Msa0003000 AT2G21240.1 48.830 342 115 7 5 339 8 296 6.54e-100 297
Msa0003000 AT2G21240.2 48.830 342 115 7 5 339 8 296 6.54e-100 297
Msa0003000 AT4G38910.2 45.266 338 120 7 5 339 8 283 8.46e-93 278
Msa0003000 AT4G38910.1 45.253 316 111 6 24 339 5 258 1.35e-86 261
Msa0003000 AT2G35550.2 55.932 118 52 0 222 339 109 226 1.46e-45 155
Msa0003000 AT2G35550.4 55.932 118 52 0 222 339 109 226 1.46e-45 155
Msa0003000 AT2G35550.3 55.932 118 52 0 222 339 109 226 1.46e-45 155
Msa0003000 AT2G35550.1 55.932 118 52 0 222 339 154 271 1.91e-45 156
Msa0003000 AT1G68120.1 56.075 107 47 0 233 339 163 269 1.36e-43 151
Msa0003000 AT2G01930.2 55.455 110 49 0 230 339 174 283 2.13e-43 151
Msa0003000 AT2G01930.1 55.455 110 49 0 230 339 174 283 2.13e-43 151
Msa0003000 AT1G14685.1 54.545 110 50 0 230 339 170 279 2.34e-42 148
Msa0003000 AT1G14685.4 54.545 110 50 0 230 339 170 279 2.34e-42 148
Msa0003000 AT1G14685.3 54.545 110 50 0 230 339 170 279 2.34e-42 148
Msa0003000 AT1G14685.2 54.545 110 50 0 230 339 170 279 2.34e-42 148

Find 135 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGCCCAATGGTCTTTA+AGG 0.149233 1_1:-5448104 None:intergenic
GGTAAACCATTTGCCTAATA+TGG 0.151975 1_1:+5447513 Msa0003000:CDS
TTTCCTTGGATCCTAATTAT+AGG 0.234185 1_1:-5448285 None:intergenic
CCATTCAAGCTCTTTGTTGT+TGG 0.281988 1_1:-5447731 None:intergenic
TTGATCATGTATTGCCTATC+TGG 0.283114 1_1:-5448177 None:intergenic
TTGCTGTACAACCACTTTAT+CGG 0.289810 1_1:+5447951 Msa0003000:CDS
TCTGGCCCTCTCTGAGAAAA+AGG 0.293315 1_1:+5447288 Msa0003000:CDS
AGTAGTGAGGAAATGATAAA+TGG 0.302982 1_1:+5447757 Msa0003000:CDS
GATTGACATAATTTGCTTCA+TGG 0.306231 1_1:-5447230 None:intergenic
GTTGAACAAGGAGGAAAATA+AGG 0.306983 1_1:+5448221 Msa0003000:three_prime_UTR
CTGATGGACGATCGTGAAAA+TGG 0.307285 1_1:+5447008 Msa0003000:exon
TGGTGGCAATCGCATTTAAT+AGG 0.330547 1_1:+5448366 Msa0003000:three_prime_UTR
AAAATGAATAATGTTCTTGT+TGG 0.333606 1_1:-5444916 None:intergenic
TAAGAAGAATCACCCATATT+AGG 0.336214 1_1:-5447526 None:intergenic
AATGTGTCATTCCTATAATT+AGG 0.341337 1_1:+5448274 Msa0003000:three_prime_UTR
CTTACTTTCCTTTGGCCGTT+TGG 0.363106 1_1:-5447629 None:intergenic
TTCTTGTCGTGTTTCTCACT+TGG 0.366292 1_1:-5444843 None:intergenic
ACCGAGTTGGATGCGGGATT+AGG 0.375501 1_1:+5446941 Msa0003000:five_prime_UTR
CTAACCTCGCAGCCGAAGTC+TGG 0.376477 1_1:-5445417 None:intergenic
AATAATGTTCTTGTTGGATT+TGG 0.376856 1_1:-5444910 None:intergenic
TTGCAGGTCAAAATGGTTAC+CGG 0.376883 1_1:-5448330 None:intergenic
CAATGGTCTTTAAGGTCAAC+CGG 0.380775 1_1:-5448096 None:intergenic
TTTCCCAACCTCTGAAGAAA+TGG 0.384675 1_1:-5447593 None:intergenic
GAATCAGACTTACTTTCCTT+TGG 0.396516 1_1:-5447637 None:intergenic
CCAACAACAAAGAGCTTGAA+TGG 0.401945 1_1:+5447731 Msa0003000:CDS
CTACCATTTGTTAATTCTGA+TGG 0.405480 1_1:+5446992 Msa0003000:exon
GGCCAGATTTCTTTCTTGAA+TGG 0.411936 1_1:-5447272 None:intergenic
GGAACGGAATAATGCACTTA+TGG 0.418242 1_1:+5447363 Msa0003000:CDS
CGAGAAAATGCTTTGGCCAA+TGG 0.428561 1_1:+5447418 Msa0003000:CDS
GTATCGATTTGTACCATGTT+TGG 0.434696 1_1:-5448121 None:intergenic
TTCCCAACCTCTGAAGAAAT+GGG 0.437141 1_1:-5447592 None:intergenic
GTTGATTCGGATTCAGTCGC+TGG 0.437150 1_1:+5446713 Msa0003000:five_prime_UTR
AGGTTTCCAATCAGCCTTTG+AGG 0.441798 1_1:-5447809 None:intergenic
TATACATCACCTTCCGCAAC+AGG 0.447735 1_1:+5447492 Msa0003000:CDS
AATCACCCATATTAGGCAAA+TGG 0.448313 1_1:-5447519 None:intergenic
TTGTACCATGTTTGGCCCAA+TGG 0.454297 1_1:-5448113 None:intergenic
ATAATTAGGATCCAAGGAAA+TGG 0.454358 1_1:+5448288 Msa0003000:three_prime_UTR
TAGCAGCCTCAAAGGCTGAT+TGG 0.454649 1_1:+5447803 Msa0003000:CDS
AATATGGGTGATTCTTCTTA+CGG 0.455899 1_1:+5447529 Msa0003000:CDS
AGATCAATATAAATCTGCTC+AGG 0.457509 1_1:+5447043 Msa0003000:CDS
TTCTGAGACAGTGCTACAAA+TGG 0.466001 1_1:+5447905 Msa0003000:CDS
TCGTGTTTCTCACTTGGGTA+TGG 0.467764 1_1:-5444837 None:intergenic
GTACAAGAGCATGCTGGTGC+TGG 0.473862 1_1:-5447877 None:intergenic
GCACCAGCATGCTCTTGTAC+TGG 0.474798 1_1:+5447880 Msa0003000:CDS
CGGTTGACCTTAAAGACCAT+TGG 0.478594 1_1:+5448097 Msa0003000:CDS
TCTGAGACAGTGCTACAAAT+GGG 0.478630 1_1:+5447906 Msa0003000:CDS
GTAAACCATTTGCCTAATAT+GGG 0.479892 1_1:+5447514 Msa0003000:CDS
TCTTAACCCTCTAGTTCAAA+GGG 0.482472 1_1:+5445378 Msa0003000:five_prime_UTR
CAGTGCTACAAATGGGGTAA+TGG 0.484703 1_1:+5447913 Msa0003000:CDS
TCAGTTTCGAGAAAATGCTT+TGG 0.485734 1_1:+5447411 Msa0003000:CDS
GTCTTAACCCTCTAGTTCAA+AGG 0.489092 1_1:+5445377 Msa0003000:five_prime_UTR
AGCCATTCAAGAAAGAAATC+TGG 0.489436 1_1:+5447270 Msa0003000:CDS
CCCCGTGAGATTTGACATCC+TGG 0.492305 1_1:-5447460 None:intergenic
TGATTGGAAACCTCAGGACT+TGG 0.494236 1_1:+5447819 Msa0003000:CDS
GGCAAATGGTTTACCTGTTG+CGG 0.495581 1_1:-5447505 None:intergenic
TTCCAGCTGTGCCCAACAAA+AGG 0.495805 1_1:+5447983 Msa0003000:CDS
GAAGCAAATTATGTCAATCA+TGG 0.497300 1_1:+5447234 Msa0003000:CDS
AGTTCAAAGGGAAGGTGAGC+TGG 0.498029 1_1:+5445390 Msa0003000:five_prime_UTR
CTTAGCCGGCTTGCAGCTGA+AGG 0.500276 1_1:+5448057 Msa0003000:CDS
CGTCCATCAGAATTAACAAA+TGG 0.501557 1_1:-5446995 None:intergenic
TTGAATCATCGTATGCAACT+TGG 0.503216 1_1:-5447849 None:intergenic
AGATAGGCAATACATGATCA+AGG 0.503374 1_1:+5448179 Msa0003000:three_prime_UTR
TCTTGTCGTGTTTCTCACTT+GGG 0.503703 1_1:-5444842 None:intergenic
GACATAATTTGCTTCATGGA+AGG 0.504898 1_1:-5447226 None:intergenic
ATATAAATCTGCTCAGGGAC+AGG 0.509112 1_1:+5447049 Msa0003000:CDS
CTTTCAATAAACTACTTAGC+CGG 0.514461 1_1:+5448043 Msa0003000:CDS
TTTGGCCGTTTGGCACGCCT+AGG 0.515774 1_1:-5447619 None:intergenic
TTGTTGGGCACAGCTGGAAG+TGG 0.517836 1_1:-5447979 None:intergenic
GGTATGTCATCATGCCCTCC+AGG 0.518820 1_1:+5447442 Msa0003000:CDS
TTGATTGACCGAGTTGGATG+CGG 0.521545 1_1:+5446934 Msa0003000:five_prime_UTR
GGTTGACCTTAAAGACCATT+GGG 0.521688 1_1:+5448098 Msa0003000:CDS
CACCTTCCCTTTGAACTAGA+GGG 0.524654 1_1:-5445384 None:intergenic
GGCTTGATTAATACATCTTG+TGG 0.531451 1_1:+5448387 Msa0003000:three_prime_UTR
CAAGCAGTTAGCAGCCTCAA+AGG 0.533010 1_1:+5447795 Msa0003000:CDS
AAAGGCTGATTGGAAACCTC+AGG 0.538629 1_1:+5447813 Msa0003000:CDS
AACCACCTAGGCGTGCCAAA+CGG 0.540428 1_1:+5447614 Msa0003000:CDS
TGATTGACCGAGTTGGATGC+GGG 0.542081 1_1:+5446935 Msa0003000:five_prime_UTR
CAATTGCAGTATCTCGCTGC+AGG 0.542654 1_1:-5447339 None:intergenic
ACAAATGGGGTAATGGAGGT+TGG 0.545815 1_1:+5447920 Msa0003000:CDS
ATCTAGAAAAGTCAAGAAAG+AGG 0.546447 1_1:+5447681 Msa0003000:CDS
GGCCGTTTGGCACGCCTAGG+TGG 0.547084 1_1:-5447616 None:intergenic
ATTCCTATAATTAGGATCCA+AGG 0.551896 1_1:+5448282 Msa0003000:three_prime_UTR
TCCAGGATGTCAAATCTCAC+GGG 0.552910 1_1:+5447459 Msa0003000:CDS
CAAGATTCAACTAAAGTACA+AGG 0.554025 1_1:-5448435 None:intergenic
ACATGATCAAGGGTCAGCTA+TGG 0.554160 1_1:+5448190 Msa0003000:three_prime_UTR
TCACCTTCCCTTTGAACTAG+AGG 0.558387 1_1:-5445385 None:intergenic
AGAAGCTTACGAAAAGTGAA+AGG 0.560219 1_1:-5444976 None:intergenic
CTCCAGGATGTCAAATCTCA+CGG 0.563255 1_1:+5447458 Msa0003000:CDS
TTGATTCGGATTCAGTCGCT+GGG 0.566827 1_1:+5446714 Msa0003000:five_prime_UTR
GCATGATGACATACCACCAT+TGG 0.567052 1_1:-5447434 None:intergenic
TATTGCTTGATTGACCGAGT+TGG 0.567676 1_1:+5446928 Msa0003000:five_prime_UTR
TCCTAATCCCGCATCCAACT+CGG 0.576248 1_1:-5446942 None:intergenic
TTGATTAATACATCTTGTGG+TGG 0.577501 1_1:+5448390 Msa0003000:three_prime_UTR
CAATGTAAAACATATGTCAC+CGG 0.578180 1_1:+5448311 Msa0003000:three_prime_UTR
TGAGCTGGTAATCCAGACTT+CGG 0.578327 1_1:+5445405 Msa0003000:five_prime_UTR
AACCCTCTAGTTCAAAGGGA+AGG 0.582967 1_1:+5445382 Msa0003000:five_prime_UTR
TTTGCTTCATGGAAGGATGC+TGG 0.583298 1_1:-5447219 None:intergenic
CATACCATGCTTGTACATAG+AGG 0.592266 1_1:-5446744 None:intergenic
TGGTTCAATGCCAAGTCCTG+AGG 0.592965 1_1:-5447829 None:intergenic
AGAGCATGCTGGTGCTGGCA+TGG 0.596415 1_1:-5447872 None:intergenic
CCCAACCTCTGAAGAAATGG+GGG 0.597363 1_1:-5447590 None:intergenic
GCTTGAATGGAAGAGTAGTG+AGG 0.599481 1_1:+5447744 Msa0003000:CDS
AAAAGGCATGCTCGAGTAGG+TGG 0.599819 1_1:+5448000 Msa0003000:CDS
TAGGCGTGCCAAACGGCCAA+AGG 0.600212 1_1:+5447621 Msa0003000:CDS
CATGCCCTTCAGCTGCAAGC+CGG 0.601437 1_1:-5448062 None:intergenic
AAAGACCATTGGGCCAAACA+TGG 0.604624 1_1:+5448108 Msa0003000:CDS
AAGTGGATATACCGATAAAG+TGG 0.604637 1_1:-5447962 None:intergenic
TCTAGAAAAGTCAAGAAAGA+GGG 0.605111 1_1:+5447682 Msa0003000:CDS
AATGGTTTACCTGTTGCGGA+AGG 0.606017 1_1:-5447501 None:intergenic
GAGATACTGCAATTGCGGAA+CGG 0.606489 1_1:+5447347 Msa0003000:CDS
TGCTACAAATGGGGTAATGG+AGG 0.606890 1_1:+5447916 Msa0003000:CDS
TCCCAACCTCTGAAGAAATG+GGG 0.610433 1_1:-5447591 None:intergenic
GATCAATATAAATCTGCTCA+GGG 0.611740 1_1:+5447044 Msa0003000:CDS
GCAGCGAGATACTGCAATTG+CGG 0.613903 1_1:+5447342 Msa0003000:CDS
GAAAATGCTTTGGCCAATGG+TGG 0.615877 1_1:+5447421 Msa0003000:CDS
CAGAGGTTGGGAAACCACCT+AGG 0.616912 1_1:+5447602 Msa0003000:CDS
AGCACTTGCAGAACGTGACA+TGG 0.620297 1_1:+5447312 Msa0003000:CDS
TGGACGATCGTGAAAATGGA+AGG 0.626784 1_1:+5447012 Msa0003000:CDS
TTAGCCGGCTTGCAGCTGAA+GGG 0.630246 1_1:+5448058 Msa0003000:CDS
GTTGGATGCGGGATTAGGAG+AGG 0.635531 1_1:+5446946 Msa0003000:five_prime_UTR
CTGAGACAGTGCTACAAATG+GGG 0.642920 1_1:+5447907 Msa0003000:CDS
AGGGCATGATCTCTCACACC+CGG 0.643910 1_1:+5448077 Msa0003000:CDS
ACACCAGTACAAGAGCATGC+TGG 0.644328 1_1:-5447883 None:intergenic
ATAGCCTCTATGTACAAGCA+TGG 0.646465 1_1:+5446740 Msa0003000:five_prime_UTR
GATAGGCAATACATGATCAA+GGG 0.654247 1_1:+5448180 Msa0003000:three_prime_UTR
GTGAGATTTGACATCCTGGA+GGG 0.655568 1_1:-5447456 None:intergenic
AACAAAAGGCATGCTCGAGT+AGG 0.658830 1_1:+5447997 Msa0003000:CDS
CCAGGATGTCAAATCTCACG+GGG 0.670697 1_1:+5447460 Msa0003000:CDS
AATGGTCTTTAAGGTCAACC+GGG 0.672212 1_1:-5448095 None:intergenic
ATGGATTCTAAAGTTGAACA+AGG 0.676747 1_1:+5448209 Msa0003000:three_prime_UTR
CGACAAGAAAACAACTACAG+AGG 0.678678 1_1:+5444857 Msa0003000:five_prime_UTR
TAATCCAGACTTCGGCTGCG+AGG 0.686239 1_1:+5445413 Msa0003000:five_prime_UTR
AAATGCGATTGCCACCACCA+CGG 0.689345 1_1:-5448360 None:intergenic
CGTGAGATTTGACATCCTGG+AGG 0.739694 1_1:-5447457 None:intergenic
GATTCTAAAGTTGAACAAGG+AGG 0.751080 1_1:+5448212 Msa0003000:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTAGGTATTATTTTTT+TGG + chr1_1:5445355-5445374 Msa0003000:intron 15.0%
!! ATCTTAAATGAAAGAAAAAA+AGG - chr1_1:5446583-5446602 None:intergenic 15.0%
!! AAAATGAATAATGTTCTTGT+TGG - chr1_1:5444919-5444938 None:intergenic 20.0%
!!! TTGTTTTTGATTTCGAAAAT+TGG + chr1_1:5445142-5445161 Msa0003000:intron 20.0%
!!! TGTTTTTGATTTCGAAAATT+GGG + chr1_1:5445143-5445162 Msa0003000:intron 20.0%
!!! TTTTTAGAATTGCTCTTTTT+AGG + chr1_1:5445341-5445360 Msa0003000:intron 20.0%
!!! ATTATTTTGTAGCTTATTAC+TGG - chr1_1:5445977-5445996 None:intergenic 20.0%
!! AAACATTGCATAAATAAATG+AGG - chr1_1:5446070-5446089 None:intergenic 20.0%
!!! AATTTTTTGAAGAGTTGATT+CGG + chr1_1:5446700-5446719 Msa0003000:five_prime_UTR 20.0%
! ACAGAGGTAAAAAAAAAAAG+CGG + chr1_1:5444873-5444892 Msa0003000:five_prime_UTR 25.0%
! AATAATGTTCTTGTTGGATT+TGG - chr1_1:5444913-5444932 None:intergenic 25.0%
!!! GTTTTTGATTTCGAAAATTG+GGG + chr1_1:5445144-5445163 Msa0003000:intron 25.0%
! AACACTAACAAAGGAAAAAA+AGG - chr1_1:5445524-5445543 None:intergenic 25.0%
! TAAAACATGAACACTAACAA+AGG - chr1_1:5445533-5445552 None:intergenic 25.0%
! TTGTGAAATTGTTGCTATAT+TGG - chr1_1:5445661-5445680 None:intergenic 25.0%
! AAACATCAACAAACAAATTG+TGG - chr1_1:5445833-5445852 None:intergenic 25.0%
! CAATTACACAACACTTAAAA+GGG - chr1_1:5446017-5446036 None:intergenic 25.0%
! ATGATTAGGATAGCATAAAA+TGG - chr1_1:5446099-5446118 None:intergenic 25.0%
!! TATGCTATCCTAATCATTTT+TGG + chr1_1:5446102-5446121 Msa0003000:intron 25.0%
! TGTTTGATCCAAAAATGATT+AGG - chr1_1:5446113-5446132 None:intergenic 25.0%
!!! AATCATTTTTGGATCAAACA+AGG + chr1_1:5446113-5446132 Msa0003000:intron 25.0%
! AAAGTTCTGTTCAAACAATA+AGG - chr1_1:5446209-5446228 None:intergenic 25.0%
!! TACAAAGTGTTATCAAATAG+CGG - chr1_1:5446353-5446372 None:intergenic 25.0%
! TTAGCAGTATTGTCAAATAT+CGG - chr1_1:5446444-5446463 None:intergenic 25.0%
! TCAGGGAAAATTACTAATTA+TGG - chr1_1:5446509-5446528 None:intergenic 25.0%
! TAGTTCCTTAATTGATATTC+AGG + chr1_1:5446892-5446911 Msa0003000:intron 25.0%
!!! TTAAATTTATTTCTGAGCAG+AGG - chr1_1:5447088-5447107 None:intergenic 25.0%
!! TTCTTGACTTTTCTAGATTT+TGG - chr1_1:5447679-5447698 None:intergenic 25.0%
!! AATGTGTCATTCCTATAATT+AGG + chr1_1:5448274-5448293 Msa0003000:three_prime_UTR 25.0%
TGTCGAAATTGTGAAAATTG+CGG + chr1_1:5445203-5445222 Msa0003000:intron 30.0%
! ATTATCACCTTTTATGTGTG+TGG + chr1_1:5445562-5445581 Msa0003000:intron 30.0%
! TTATCACCTTTTATGTGTGT+GGG + chr1_1:5445563-5445582 Msa0003000:intron 30.0%
CAAACAAATTGTGGCAATAA+TGG - chr1_1:5445824-5445843 None:intergenic 30.0%
ACTTTCTAATTGCTAAGACT+AGG + chr1_1:5445896-5445915 Msa0003000:intron 30.0%
CCAATTACACAACACTTAAA+AGG - chr1_1:5446018-5446037 None:intergenic 30.0%
!! CCTTTTAAGTGTTGTGTAAT+TGG + chr1_1:5446015-5446034 Msa0003000:intron 30.0%
TGTTCAAACAATAAGGAAGA+GGG - chr1_1:5446202-5446221 None:intergenic 30.0%
! TTTGAACAGAACTTTTTGCA+TGG + chr1_1:5446214-5446233 Msa0003000:intron 30.0%
TATTTGTCTCTGTCATTGTT+GGG + chr1_1:5446270-5446289 Msa0003000:intron 30.0%
! AAATATCGGCTATAGATTAG+CGG - chr1_1:5446430-5446449 None:intergenic 30.0%
CAAAGGCAATTTGAAAATCA+GGG - chr1_1:5446526-5446545 None:intergenic 30.0%
ACAAAGGCAATTTGAAAATC+AGG - chr1_1:5446527-5446546 None:intergenic 30.0%
!! ATTCGAGTTTTTATCATAGC+TGG + chr1_1:5446620-5446639 Msa0003000:intron 30.0%
! CAGAAAAATTTGATTCGAGT+TGG - chr1_1:5446673-5446692 None:intergenic 30.0%
! TCGAATCAAATTTTTCTGCA+GGG + chr1_1:5446675-5446694 Msa0003000:intron 30.0%
ACAACACTAACAAAGAATAG+AGG - chr1_1:5446787-5446806 None:intergenic 30.0%
CTATTCTTTGTTAGTGTTGT+TGG + chr1_1:5446787-5446806 Msa0003000:intron 30.0%
CAAGTCCTGAATATCAATTA+AGG - chr1_1:5446900-5446919 None:intergenic 30.0%
! CTACCATTTGTTAATTCTGA+TGG + chr1_1:5446992-5447011 Msa0003000:exon 30.0%
AGATCAATATAAATCTGCTC+AGG + chr1_1:5447043-5447062 Msa0003000:CDS 30.0%
GATCAATATAAATCTGCTCA+GGG + chr1_1:5447044-5447063 Msa0003000:CDS 30.0%
!! TCTAAAAATTGCTTTTGCAG+TGG + chr1_1:5447179-5447198 Msa0003000:intron 30.0%
!! GATTGACATAATTTGCTTCA+TGG - chr1_1:5447233-5447252 None:intergenic 30.0%
GAAGCAAATTATGTCAATCA+TGG + chr1_1:5447234-5447253 Msa0003000:CDS 30.0%
GTAAACCATTTGCCTAATAT+GGG + chr1_1:5447514-5447533 Msa0003000:CDS 30.0%
TAAGAAGAATCACCCATATT+AGG - chr1_1:5447529-5447548 None:intergenic 30.0%
AATATGGGTGATTCTTCTTA+CGG + chr1_1:5447529-5447548 Msa0003000:CDS 30.0%
ATCTAGAAAAGTCAAGAAAG+AGG + chr1_1:5447681-5447700 Msa0003000:CDS 30.0%
TCTAGAAAAGTCAAGAAAGA+GGG + chr1_1:5447682-5447701 Msa0003000:CDS 30.0%
AGTAGTGAGGAAATGATAAA+TGG + chr1_1:5447757-5447776 Msa0003000:CDS 30.0%
CTTTCAATAAACTACTTAGC+CGG + chr1_1:5448043-5448062 Msa0003000:CDS 30.0%
!! ATGGATTCTAAAGTTGAACA+AGG + chr1_1:5448209-5448228 Msa0003000:three_prime_UTR 30.0%
ATTCCTATAATTAGGATCCA+AGG + chr1_1:5448282-5448301 Msa0003000:three_prime_UTR 30.0%
TTTCCTTGGATCCTAATTAT+AGG - chr1_1:5448288-5448307 None:intergenic 30.0%
ATAATTAGGATCCAAGGAAA+TGG + chr1_1:5448288-5448307 Msa0003000:three_prime_UTR 30.0%
CAATGTAAAACATATGTCAC+CGG + chr1_1:5448311-5448330 Msa0003000:three_prime_UTR 30.0%
TTGATTAATACATCTTGTGG+TGG + chr1_1:5448390-5448409 Msa0003000:three_prime_UTR 30.0%
CAAGATTCAACTAAAGTACA+AGG - chr1_1:5448438-5448457 None:intergenic 30.0%
!! TATTCATTTTTCTGCTGCGA+AGG + chr1_1:5444929-5444948 Msa0003000:five_prime_UTR 35.0%
AGAAGCTTACGAAAAGTGAA+AGG - chr1_1:5444979-5444998 None:intergenic 35.0%
TCGACAACAACAAAAACACA+CGG - chr1_1:5445189-5445208 None:intergenic 35.0%
CTTTCAACTACAAAGTACGA+AGG - chr1_1:5445262-5445281 None:intergenic 35.0%
! TCTTAACCCTCTAGTTCAAA+GGG + chr1_1:5445378-5445397 Msa0003000:five_prime_UTR 35.0%
TTACAGCCATAATTCGAACT+CGG + chr1_1:5445460-5445479 Msa0003000:intron 35.0%
ACACCAATGTTGTTAACTAG+CGG - chr1_1:5445759-5445778 None:intergenic 35.0%
CTAGTTAACAACATTGGTGT+GGG + chr1_1:5445759-5445778 Msa0003000:intron 35.0%
! GAAAGTTTTACACACAACGA+AGG - chr1_1:5445882-5445901 None:intergenic 35.0%
GGTAGTTAACTTATTGACCT+TGG + chr1_1:5445944-5445963 Msa0003000:intron 35.0%
GTTAACTTATTGACCTTGGA+TGG + chr1_1:5445948-5445967 Msa0003000:intron 35.0%
!! TTATTACTGGTTTCCATCCA+AGG - chr1_1:5445964-5445983 None:intergenic 35.0%
GTTCAAACAATAAGGAAGAG+GGG - chr1_1:5446201-5446220 None:intergenic 35.0%
CTGTTCAAACAATAAGGAAG+AGG - chr1_1:5446203-5446222 None:intergenic 35.0%
CTATTTGTCTCTGTCATTGT+TGG + chr1_1:5446269-5446288 Msa0003000:intron 35.0%
ATTTGTCTCTGTCATTGTTG+GGG + chr1_1:5446271-5446290 Msa0003000:intron 35.0%
CTGTCAATCATGGAAAATAG+CGG + chr1_1:5446299-5446318 Msa0003000:intron 35.0%
!! CGAGAATCAATCACTTTTGT+TGG - chr1_1:5446485-5446504 None:intergenic 35.0%
! CTCGAATCAAATTTTTCTGC+AGG + chr1_1:5446674-5446693 Msa0003000:intron 35.0%
AATAGAGGTGGAAAAGGTTA+TGG - chr1_1:5446772-5446791 None:intergenic 35.0%
ACAAAGAATAGAGGTGGAAA+AGG - chr1_1:5446778-5446797 None:intergenic 35.0%
ACACTAACAAAGAATAGAGG+TGG - chr1_1:5446784-5446803 None:intergenic 35.0%
CGTCCATCAGAATTAACAAA+TGG - chr1_1:5446998-5447017 None:intergenic 35.0%
! AAGTGCTGCATATACCTAAA+AGG + chr1_1:5447134-5447153 Msa0003000:intron 35.0%
AGTGCTGCATATACCTAAAA+GGG + chr1_1:5447135-5447154 Msa0003000:intron 35.0%
!! GACATAATTTGCTTCATGGA+AGG - chr1_1:5447229-5447248 None:intergenic 35.0%
AGCCATTCAAGAAAGAAATC+TGG + chr1_1:5447270-5447289 Msa0003000:CDS 35.0%
! AGCATTTTCTCGAAACTGAA+GGG - chr1_1:5447410-5447429 None:intergenic 35.0%
! AAGCATTTTCTCGAAACTGA+AGG - chr1_1:5447411-5447430 None:intergenic 35.0%
TCAGTTTCGAGAAAATGCTT+TGG + chr1_1:5447411-5447430 Msa0003000:CDS 35.0%
GGTAAACCATTTGCCTAATA+TGG + chr1_1:5447513-5447532 Msa0003000:CDS 35.0%
AATCACCCATATTAGGCAAA+TGG - chr1_1:5447522-5447541 None:intergenic 35.0%
GAATCAGACTTACTTTCCTT+TGG - chr1_1:5447640-5447659 None:intergenic 35.0%
!!! GATTTTGGAGTCTTCTTGTT+AGG - chr1_1:5447664-5447683 None:intergenic 35.0%
TTGAATCATCGTATGCAACT+TGG - chr1_1:5447852-5447871 None:intergenic 35.0%
TTGCTGTACAACCACTTTAT+CGG + chr1_1:5447951-5447970 Msa0003000:CDS 35.0%
AAGTGGATATACCGATAAAG+TGG - chr1_1:5447965-5447984 None:intergenic 35.0%
!! GTATCGATTTGTACCATGTT+TGG - chr1_1:5448124-5448143 None:intergenic 35.0%
TTGATCATGTATTGCCTATC+TGG - chr1_1:5448180-5448199 None:intergenic 35.0%
AGATAGGCAATACATGATCA+AGG + chr1_1:5448179-5448198 Msa0003000:three_prime_UTR 35.0%
GATAGGCAATACATGATCAA+GGG + chr1_1:5448180-5448199 Msa0003000:three_prime_UTR 35.0%
!! GATTCTAAAGTTGAACAAGG+AGG + chr1_1:5448212-5448231 Msa0003000:three_prime_UTR 35.0%
GTTGAACAAGGAGGAAAATA+AGG + chr1_1:5448221-5448240 Msa0003000:three_prime_UTR 35.0%
!! GTTTTACATTGCCATTTCCT+TGG - chr1_1:5448302-5448321 None:intergenic 35.0%
!! ACCATTTTGACCTGCAAAAA+TGG + chr1_1:5448336-5448355 Msa0003000:three_prime_UTR 35.0%
!! ACCATTTTTGCAGGTCAAAA+TGG - chr1_1:5448340-5448359 None:intergenic 35.0%
GGCTTGATTAATACATCTTG+TGG + chr1_1:5448387-5448406 Msa0003000:three_prime_UTR 35.0%
TCTTGTCGTGTTTCTCACTT+GGG - chr1_1:5444845-5444864 None:intergenic 40.0%
TTCTTGTCGTGTTTCTCACT+TGG - chr1_1:5444846-5444865 None:intergenic 40.0%
CGACAAGAAAACAACTACAG+AGG + chr1_1:5444857-5444876 Msa0003000:five_prime_UTR 40.0%
! TTTTTCTGCTGCGAAGGATT+AGG + chr1_1:5444935-5444954 Msa0003000:five_prime_UTR 40.0%
! TTTTCTGCTGCGAAGGATTA+GGG + chr1_1:5444936-5444955 Msa0003000:five_prime_UTR 40.0%
! GTCTTAACCCTCTAGTTCAA+AGG + chr1_1:5445377-5445396 Msa0003000:five_prime_UTR 40.0%
TACAGCCATAATTCGAACTC+GGG + chr1_1:5445461-5445480 Msa0003000:intron 40.0%
TAGAACCCGAGTTCGAATTA+TGG - chr1_1:5445469-5445488 None:intergenic 40.0%
TTGTTAACTAGCGGCAATAG+TGG - chr1_1:5445750-5445769 None:intergenic 40.0%
TTGCCGCTAGTTAACAACAT+TGG + chr1_1:5445753-5445772 Msa0003000:intron 40.0%
GCTAGTTAACAACATTGGTG+TGG + chr1_1:5445758-5445777 Msa0003000:intron 40.0%
!!! GAGACGAAGCTTGTTGTTTT+TGG + chr1_1:5445855-5445874 Msa0003000:intron 40.0%
! CTATCACTGACTGACTGTTA+AGG + chr1_1:5445923-5445942 Msa0003000:intron 40.0%
!! TCACTTTTGTTGGAGCACAA+AGG - chr1_1:5446475-5446494 None:intergenic 40.0%
AGATAACCACTAACTGTGCA+CGG - chr1_1:5446552-5446571 None:intergenic 40.0%
ATAGCCTCTATGTACAAGCA+TGG + chr1_1:5446740-5446759 Msa0003000:five_prime_UTR 40.0%
CATACCATGCTTGTACATAG+AGG - chr1_1:5446747-5446766 None:intergenic 40.0%
TATTGCTTGATTGACCGAGT+TGG + chr1_1:5446928-5446947 Msa0003000:five_prime_UTR 40.0%
ATATAAATCTGCTCAGGGAC+AGG + chr1_1:5447049-5447068 Msa0003000:CDS 40.0%
!!! AGTAGAGAAAGCACCCTTTT+AGG - chr1_1:5447151-5447170 None:intergenic 40.0%
GGCCAGATTTCTTTCTTGAA+TGG - chr1_1:5447275-5447294 None:intergenic 40.0%
GGAACGGAATAATGCACTTA+TGG + chr1_1:5447363-5447382 Msa0003000:CDS 40.0%
! TTCCCAACCTCTGAAGAAAT+GGG - chr1_1:5447595-5447614 None:intergenic 40.0%
! TTTCCCAACCTCTGAAGAAA+TGG - chr1_1:5447596-5447615 None:intergenic 40.0%
! CCATTCAAGCTCTTTGTTGT+TGG - chr1_1:5447734-5447753 None:intergenic 40.0%
CCAACAACAAAGAGCTTGAA+TGG + chr1_1:5447731-5447750 Msa0003000:CDS 40.0%
!! TTCTGAGACAGTGCTACAAA+TGG + chr1_1:5447905-5447924 Msa0003000:CDS 40.0%
! TCTGAGACAGTGCTACAAAT+GGG + chr1_1:5447906-5447925 Msa0003000:CDS 40.0%
GTAGGTGGTAGAAAAATGAG+TGG + chr1_1:5448015-5448034 Msa0003000:CDS 40.0%
!! AATGGTCTTTAAGGTCAACC+GGG - chr1_1:5448098-5448117 None:intergenic 40.0%
!! CAATGGTCTTTAAGGTCAAC+CGG - chr1_1:5448099-5448118 None:intergenic 40.0%
GGTTGACCTTAAAGACCATT+GGG + chr1_1:5448098-5448117 Msa0003000:CDS 40.0%
! CGATGCATTTTTCTCCAGAT+AGG + chr1_1:5448163-5448182 Msa0003000:three_prime_UTR 40.0%
TTGCAGGTCAAAATGGTTAC+CGG - chr1_1:5448333-5448352 None:intergenic 40.0%
TGGTGGCAATCGCATTTAAT+AGG + chr1_1:5448366-5448385 Msa0003000:three_prime_UTR 40.0%
TCGTGTTTCTCACTTGGGTA+TGG - chr1_1:5444840-5444859 None:intergenic 45.0%
! AACCCTCTAGTTCAAAGGGA+AGG + chr1_1:5445382-5445401 Msa0003000:five_prime_UTR 45.0%
CACCTTCCCTTTGAACTAGA+GGG - chr1_1:5445387-5445406 None:intergenic 45.0%
TCACCTTCCCTTTGAACTAG+AGG - chr1_1:5445388-5445407 None:intergenic 45.0%
TGAGCTGGTAATCCAGACTT+CGG + chr1_1:5445405-5445424 Msa0003000:five_prime_UTR 45.0%
CACTGACCCACACACATAAA+AGG - chr1_1:5445572-5445591 None:intergenic 45.0%
TTAGAGCAATTGCGCTAGCA+GGG - chr1_1:5446148-5446167 None:intergenic 45.0%
ATTAGAGCAATTGCGCTAGC+AGG - chr1_1:5446149-5446168 None:intergenic 45.0%
GAATCTGAACAAAGCGCGAT+AGG - chr1_1:5446384-5446403 None:intergenic 45.0%
!! TTGATTCGGATTCAGTCGCT+GGG + chr1_1:5446714-5446733 Msa0003000:five_prime_UTR 45.0%
! TTGATTGACCGAGTTGGATG+CGG + chr1_1:5446934-5446953 Msa0003000:five_prime_UTR 45.0%
! CTGATGGACGATCGTGAAAA+TGG + chr1_1:5447008-5447027 Msa0003000:exon 45.0%
TGGACGATCGTGAAAATGGA+AGG + chr1_1:5447012-5447031 Msa0003000:CDS 45.0%
TTTGCTTCATGGAAGGATGC+TGG - chr1_1:5447222-5447241 None:intergenic 45.0%
! TGCTGCCTTTTTCTCAGAGA+GGG - chr1_1:5447296-5447315 None:intergenic 45.0%
GAGATACTGCAATTGCGGAA+CGG + chr1_1:5447347-5447366 Msa0003000:CDS 45.0%
CGAGAAAATGCTTTGGCCAA+TGG + chr1_1:5447418-5447437 Msa0003000:CDS 45.0%
GAAAATGCTTTGGCCAATGG+TGG + chr1_1:5447421-5447440 Msa0003000:CDS 45.0%
GCATGATGACATACCACCAT+TGG - chr1_1:5447437-5447456 None:intergenic 45.0%
GTGAGATTTGACATCCTGGA+GGG - chr1_1:5447459-5447478 None:intergenic 45.0%
CTCCAGGATGTCAAATCTCA+CGG + chr1_1:5447458-5447477 Msa0003000:CDS 45.0%
TCCAGGATGTCAAATCTCAC+GGG + chr1_1:5447459-5447478 Msa0003000:CDS 45.0%
TATACATCACCTTCCGCAAC+AGG + chr1_1:5447492-5447511 Msa0003000:CDS 45.0%
AATGGTTTACCTGTTGCGGA+AGG - chr1_1:5447504-5447523 None:intergenic 45.0%
GGCAAATGGTTTACCTGTTG+CGG - chr1_1:5447508-5447527 None:intergenic 45.0%
! TCCCAACCTCTGAAGAAATG+GGG - chr1_1:5447594-5447613 None:intergenic 45.0%
CTTACTTTCCTTTGGCCGTT+TGG - chr1_1:5447632-5447651 None:intergenic 45.0%
GCTTGAATGGAAGAGTAGTG+AGG + chr1_1:5447744-5447763 Msa0003000:CDS 45.0%
AGGTTTCCAATCAGCCTTTG+AGG - chr1_1:5447812-5447831 None:intergenic 45.0%
AAAGGCTGATTGGAAACCTC+AGG + chr1_1:5447813-5447832 Msa0003000:CDS 45.0%
TGATTGGAAACCTCAGGACT+TGG + chr1_1:5447819-5447838 Msa0003000:CDS 45.0%
CTGAGACAGTGCTACAAATG+GGG + chr1_1:5447907-5447926 Msa0003000:CDS 45.0%
CAGTGCTACAAATGGGGTAA+TGG + chr1_1:5447913-5447932 Msa0003000:CDS 45.0%
! TGCTACAAATGGGGTAATGG+AGG + chr1_1:5447916-5447935 Msa0003000:CDS 45.0%
!! ACAAATGGGGTAATGGAGGT+TGG + chr1_1:5447920-5447939 Msa0003000:CDS 45.0%
! ACTCGAGCATGCCTTTTGTT+GGG - chr1_1:5447997-5448016 None:intergenic 45.0%
! TACTCGAGCATGCCTTTTGT+TGG - chr1_1:5447998-5448017 None:intergenic 45.0%
! AACAAAAGGCATGCTCGAGT+AGG + chr1_1:5447997-5448016 Msa0003000:CDS 45.0%
CGGTTGACCTTAAAGACCAT+TGG + chr1_1:5448097-5448116 Msa0003000:CDS 45.0%
GTTTGGCCCAATGGTCTTTA+AGG - chr1_1:5448107-5448126 None:intergenic 45.0%
AAAGACCATTGGGCCAAACA+TGG + chr1_1:5448108-5448127 Msa0003000:CDS 45.0%
TTGTACCATGTTTGGCCCAA+TGG - chr1_1:5448116-5448135 None:intergenic 45.0%
ACATGATCAAGGGTCAGCTA+TGG + chr1_1:5448190-5448209 Msa0003000:three_prime_UTR 45.0%
AGTTCAAAGGGAAGGTGAGC+TGG + chr1_1:5445390-5445409 Msa0003000:five_prime_UTR 50.0%
TGGGGCAATGCTGTCAATCA+TGG + chr1_1:5446289-5446308 Msa0003000:intron 50.0%
CTAACTGTGCACGGAGACAA+AGG - chr1_1:5446543-5446562 None:intergenic 50.0%
TTGTCTCCGTGCACAGTTAG+TGG + chr1_1:5446543-5446562 Msa0003000:intron 50.0%
!! GTTGATTCGGATTCAGTCGC+TGG + chr1_1:5446713-5446732 Msa0003000:five_prime_UTR 50.0%
ACAAATTTCCTCCACCCTCC+AGG + chr1_1:5446813-5446832 Msa0003000:intron 50.0%
CTTTCCTCCTGTGTTCCTTG+AGG - chr1_1:5446839-5446858 None:intergenic 50.0%
! TGATTGACCGAGTTGGATGC+GGG + chr1_1:5446935-5446954 Msa0003000:five_prime_UTR 50.0%
TCCTAATCCCGCATCCAACT+CGG - chr1_1:5446945-5446964 None:intergenic 50.0%
! TCTGGCCCTCTCTGAGAAAA+AGG + chr1_1:5447288-5447307 Msa0003000:CDS 50.0%
! GTGCTGCCTTTTTCTCAGAG+AGG - chr1_1:5447297-5447316 None:intergenic 50.0%
AGCACTTGCAGAACGTGACA+TGG + chr1_1:5447312-5447331 Msa0003000:CDS 50.0%
CAATTGCAGTATCTCGCTGC+AGG - chr1_1:5447342-5447361 None:intergenic 50.0%
GCAGCGAGATACTGCAATTG+CGG + chr1_1:5447342-5447361 Msa0003000:CDS 50.0%
CGTGAGATTTGACATCCTGG+AGG - chr1_1:5447460-5447479 None:intergenic 50.0%
CCAGGATGTCAAATCTCACG+GGG + chr1_1:5447460-5447479 Msa0003000:CDS 50.0%
! CCCAACCTCTGAAGAAATGG+GGG - chr1_1:5447593-5447612 None:intergenic 50.0%
CCCCCATTTCTTCAGAGGTT+GGG + chr1_1:5447590-5447609 Msa0003000:CDS 50.0%
CAAGCAGTTAGCAGCCTCAA+AGG + chr1_1:5447795-5447814 Msa0003000:CDS 50.0%
TAGCAGCCTCAAAGGCTGAT+TGG + chr1_1:5447803-5447822 Msa0003000:CDS 50.0%
TGGTTCAATGCCAAGTCCTG+AGG - chr1_1:5447832-5447851 None:intergenic 50.0%
! ACACCAGTACAAGAGCATGC+TGG - chr1_1:5447886-5447905 None:intergenic 50.0%
TTCCAGCTGTGCCCAACAAA+AGG + chr1_1:5447983-5448002 Msa0003000:CDS 50.0%
! AAAAGGCATGCTCGAGTAGG+TGG + chr1_1:5448000-5448019 Msa0003000:CDS 50.0%
TGACCTGCAAAAATGGTCCG+TGG + chr1_1:5448343-5448362 Msa0003000:three_prime_UTR 50.0%
AAATGCGATTGCCACCACCA+CGG - chr1_1:5448363-5448382 None:intergenic 50.0%
TAATCCAGACTTCGGCTGCG+AGG + chr1_1:5445413-5445432 Msa0003000:five_prime_UTR 55.0%
AATTGCGCTAGCAGGGCAAG+GGG - chr1_1:5446141-5446160 None:intergenic 55.0%
CAATTGCGCTAGCAGGGCAA+GGG - chr1_1:5446142-5446161 None:intergenic 55.0%
TGTGTTCCTTGAGGCCTGGA+GGG - chr1_1:5446830-5446849 None:intergenic 55.0%
! ACCGAGTTGGATGCGGGATT+AGG + chr1_1:5446941-5446960 Msa0003000:five_prime_UTR 55.0%
GTTGGATGCGGGATTAGGAG+AGG + chr1_1:5446946-5446965 Msa0003000:five_prime_UTR 55.0%
GGTATGTCATCATGCCCTCC+AGG + chr1_1:5447442-5447461 Msa0003000:CDS 55.0%
CCCCGTGAGATTTGACATCC+TGG - chr1_1:5447463-5447482 None:intergenic 55.0%
CTGAAGAAATGGGGGCTGCT+GGG - chr1_1:5447585-5447604 None:intergenic 55.0%
TCTGAAGAAATGGGGGCTGC+TGG - chr1_1:5447586-5447605 None:intergenic 55.0%
AGCAGCCCCCATTTCTTCAG+AGG + chr1_1:5447585-5447604 Msa0003000:CDS 55.0%
GCCCCCATTTCTTCAGAGGT+TGG + chr1_1:5447589-5447608 Msa0003000:CDS 55.0%
CAGAGGTTGGGAAACCACCT+AGG + chr1_1:5447602-5447621 Msa0003000:CDS 55.0%
AACCACCTAGGCGTGCCAAA+CGG + chr1_1:5447614-5447633 Msa0003000:CDS 55.0%
! GTACAAGAGCATGCTGGTGC+TGG - chr1_1:5447880-5447899 None:intergenic 55.0%
GCACCAGCATGCTCTTGTAC+TGG + chr1_1:5447880-5447899 Msa0003000:CDS 55.0%
TTGTTGGGCACAGCTGGAAG+TGG - chr1_1:5447982-5448001 None:intergenic 55.0%
! TGCCTTTTGTTGGGCACAGC+TGG - chr1_1:5447988-5448007 None:intergenic 55.0%
!! TTAGCCGGCTTGCAGCTGAA+GGG + chr1_1:5448058-5448077 Msa0003000:CDS 55.0%
AGGGCATGATCTCTCACACC+CGG + chr1_1:5448077-5448096 Msa0003000:CDS 55.0%
!! CCACCACGGACCATTTTTGC+AGG - chr1_1:5448349-5448368 None:intergenic 55.0%
CCTGCAAAAATGGTCCGTGG+TGG + chr1_1:5448346-5448365 Msa0003000:three_prime_UTR 55.0%
GCAAAAATGGTCCGTGGTGG+TGG + chr1_1:5448349-5448368 Msa0003000:three_prime_UTR 55.0%
CTAACCTCGCAGCCGAAGTC+TGG - chr1_1:5445420-5445439 None:intergenic 60.0%
GCAATTGCGCTAGCAGGGCA+AGG - chr1_1:5446143-5446162 None:intergenic 60.0%
CTGTGTTCCTTGAGGCCTGG+AGG - chr1_1:5446831-5446850 None:intergenic 60.0%
CTCCAGGCCTCAAGGAACAC+AGG + chr1_1:5446829-5446848 Msa0003000:intron 60.0%
CTCCTGTGTTCCTTGAGGCC+TGG - chr1_1:5446834-5446853 None:intergenic 60.0%
CAGGCCTCAAGGAACACAGG+AGG + chr1_1:5446832-5446851 Msa0003000:intron 60.0%
AGAAATGGGGGCTGCTGGGA+GGG - chr1_1:5447581-5447600 None:intergenic 60.0%
AAGAAATGGGGGCTGCTGGG+AGG - chr1_1:5447582-5447601 None:intergenic 60.0%
TTTGGCCGTTTGGCACGCCT+AGG - chr1_1:5447622-5447641 None:intergenic 60.0%
TAGGCGTGCCAAACGGCCAA+AGG + chr1_1:5447621-5447640 Msa0003000:CDS 60.0%
!! AGAGCATGCTGGTGCTGGCA+TGG - chr1_1:5447875-5447894 None:intergenic 60.0%
!! CTTAGCCGGCTTGCAGCTGA+AGG + chr1_1:5448057-5448076 Msa0003000:CDS 60.0%
CATGCCCTTCAGCTGCAAGC+CGG - chr1_1:5448065-5448084 None:intergenic 60.0%
GTTCCTTGAGGCCTGGAGGG+TGG - chr1_1:5446827-5446846 None:intergenic 65.0%
CCTTGAGGCCTGGAGGGTGG+AGG - chr1_1:5446824-5446843 None:intergenic 70.0%
CCTCCACCCTCCAGGCCTCA+AGG + chr1_1:5446821-5446840 Msa0003000:intron 70.0%
GGCCGTTTGGCACGCCTAGG+TGG - chr1_1:5447619-5447638 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5444809 5448534 5444809 ID=Msa0003000;Name=Msa0003000
chr1_1 mRNA 5444809 5448534 5444809 ID=Msa0003000-mRNA-1;Parent=Msa0003000;Name=Msa0003000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=415|1|1|1|0.25|0.2|5|376|339
chr1_1 exon 5444809 5444988 5444809 ID=Msa0003000-mRNA-1:exon:1583;Parent=Msa0003000-mRNA-1
chr1_1 exon 5445363 5445434 5445363 ID=Msa0003000-mRNA-1:exon:1584;Parent=Msa0003000-mRNA-1
chr1_1 exon 5446696 5446761 5446696 ID=Msa0003000-mRNA-1:exon:1585;Parent=Msa0003000-mRNA-1
chr1_1 exon 5446914 5447070 5446914 ID=Msa0003000-mRNA-1:exon:1586;Parent=Msa0003000-mRNA-1
chr1_1 exon 5447199 5448534 5447199 ID=Msa0003000-mRNA-1:exon:1587;Parent=Msa0003000-mRNA-1
chr1_1 five_prime_UTR 5444809 5444988 5444809 ID=Msa0003000-mRNA-1:five_prime_utr;Parent=Msa0003000-mRNA-1
chr1_1 five_prime_UTR 5445363 5445434 5445363 ID=Msa0003000-mRNA-1:five_prime_utr;Parent=Msa0003000-mRNA-1
chr1_1 five_prime_UTR 5446696 5446761 5446696 ID=Msa0003000-mRNA-1:five_prime_utr;Parent=Msa0003000-mRNA-1
chr1_1 five_prime_UTR 5446914 5447010 5446914 ID=Msa0003000-mRNA-1:five_prime_utr;Parent=Msa0003000-mRNA-1
chr1_1 CDS 5447011 5447070 5447011 ID=Msa0003000-mRNA-1:cds;Parent=Msa0003000-mRNA-1
chr1_1 CDS 5447199 5448158 5447199 ID=Msa0003000-mRNA-1:cds;Parent=Msa0003000-mRNA-1
chr1_1 three_prime_UTR 5448159 5448534 5448159 ID=Msa0003000-mRNA-1:three_prime_utr;Parent=Msa0003000-mRNA-1
Gene Sequence

>Msa0003000

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTAATGCAACAGCATCACCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATTGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAATTGCACACAACTGATGCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGGCCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG
Protein sequence

>Msa0003000

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK*