Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054560 | XP_003589387.1 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054560 | sp|Q8L999|BPC6_ARATH | 65.084 | 358 | 90 | 15 | 1 | 339 | 1 | 342 | 1.15e-148 | 425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054560 | G7I6G1 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0054560 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003000 | Msa0054560 | 0.939928 | 5.562140e-100 | -8.615850e-47 |
| Msa0054560 | Msa0102160 | 0.829340 | 5.438476e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054560 | MtrunA17_Chr1g0156031 | 98.529 | 340 | 4 | 1 | 1 | 339 | 1 | 340 | 0.0 | 699 |
| Msa0054560 | MtrunA17_Chr8g0385961 | 49.713 | 348 | 127 | 10 | 2 | 339 | 3 | 312 | 6.53e-104 | 307 |
| Msa0054560 | MtrunA17_Chr6g0479911 | 41.040 | 173 | 102 | 0 | 167 | 339 | 117 | 289 | 1.27e-45 | 157 |
| Msa0054560 | MtrunA17_Chr8g0375531 | 51.613 | 124 | 60 | 0 | 216 | 339 | 157 | 280 | 2.37e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054560 | AT5G42520.1 | 65.084 | 358 | 90 | 15 | 1 | 339 | 1 | 342 | 1.17e-149 | 425 |
| Msa0054560 | AT5G42520.2 | 63.966 | 358 | 90 | 15 | 1 | 339 | 1 | 338 | 1.96e-145 | 414 |
| Msa0054560 | AT5G42520.3 | 62.543 | 291 | 84 | 11 | 65 | 339 | 1 | 282 | 2.21e-116 | 338 |
| Msa0054560 | AT2G21240.1 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 6.54e-100 | 297 |
| Msa0054560 | AT2G21240.2 | 48.830 | 342 | 115 | 7 | 5 | 339 | 8 | 296 | 6.54e-100 | 297 |
| Msa0054560 | AT4G38910.2 | 45.266 | 338 | 120 | 7 | 5 | 339 | 8 | 283 | 8.46e-93 | 278 |
| Msa0054560 | AT4G38910.1 | 45.253 | 316 | 111 | 6 | 24 | 339 | 5 | 258 | 1.35e-86 | 261 |
| Msa0054560 | AT2G35550.2 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
| Msa0054560 | AT2G35550.4 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
| Msa0054560 | AT2G35550.3 | 55.932 | 118 | 52 | 0 | 222 | 339 | 109 | 226 | 1.46e-45 | 155 |
| Msa0054560 | AT2G35550.1 | 55.932 | 118 | 52 | 0 | 222 | 339 | 154 | 271 | 1.91e-45 | 156 |
| Msa0054560 | AT1G68120.1 | 56.075 | 107 | 47 | 0 | 233 | 339 | 163 | 269 | 1.36e-43 | 151 |
| Msa0054560 | AT2G01930.2 | 55.455 | 110 | 49 | 0 | 230 | 339 | 174 | 283 | 2.13e-43 | 151 |
| Msa0054560 | AT2G01930.1 | 55.455 | 110 | 49 | 0 | 230 | 339 | 174 | 283 | 2.13e-43 | 151 |
| Msa0054560 | AT1G14685.1 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
| Msa0054560 | AT1G14685.4 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
| Msa0054560 | AT1G14685.3 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
| Msa0054560 | AT1G14685.2 | 54.545 | 110 | 50 | 0 | 230 | 339 | 170 | 279 | 2.34e-42 | 148 |
Find 135 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGCCCAATGGTCTTTA+AGG | 0.149233 | 1_2:+9266131 | None:intergenic |
| GGTAAACCATTTGCCTAATA+TGG | 0.151975 | 1_2:-9266722 | Msa0054560:CDS |
| TTTCCTTGGATCCTAATTAT+AGG | 0.234185 | 1_2:+9265950 | None:intergenic |
| CCATTCAAGCTCTTTGTTGT+TGG | 0.281988 | 1_2:+9266504 | None:intergenic |
| TTGATCATGTATTGCCTATC+TGG | 0.283114 | 1_2:+9266058 | None:intergenic |
| TTGCTGTACAACCACTTTAT+CGG | 0.289810 | 1_2:-9266284 | Msa0054560:CDS |
| TCTGGCCCTCTCTGAGAAAA+AGG | 0.293315 | 1_2:-9266947 | Msa0054560:CDS |
| AGTAGTGAGGAAATGATAAA+TGG | 0.302982 | 1_2:-9266478 | Msa0054560:CDS |
| GATTGACATAATTTGCTTCA+TGG | 0.306231 | 1_2:+9267005 | None:intergenic |
| GTTGAACAAGGAGGAAAATA+AGG | 0.306983 | 1_2:-9266014 | Msa0054560:three_prime_UTR |
| CTGATGGACGATCGTGAAAA+TGG | 0.307285 | 1_2:-9267227 | Msa0054560:CDS |
| TGGTGGCAATCGCATTTAAT+AGG | 0.330547 | 1_2:-9265869 | Msa0054560:three_prime_UTR |
| AAAATGAATAATGTTCTTGT+TGG | 0.333606 | 1_2:+9269320 | None:intergenic |
| TAAGAAGAATCACCCATATT+AGG | 0.336214 | 1_2:+9266709 | None:intergenic |
| AATGTGTCATTCCTATAATT+AGG | 0.341337 | 1_2:-9265961 | Msa0054560:three_prime_UTR |
| CTTACTTTCCTTTGGCCGTT+TGG | 0.363106 | 1_2:+9266606 | None:intergenic |
| TTCTTGTCGTGTTTCTCACT+TGG | 0.366292 | 1_2:+9269393 | None:intergenic |
| ACCGAGTTGGATGCGGGATT+AGG | 0.375501 | 1_2:-9267294 | Msa0054560:five_prime_UTR |
| CTAACCTCGCAGCCGAAGTC+TGG | 0.376477 | 1_2:+9268818 | None:intergenic |
| AATAATGTTCTTGTTGGATT+TGG | 0.376856 | 1_2:+9269326 | None:intergenic |
| TTGCAGGTCAAAATGGTTAC+CGG | 0.376883 | 1_2:+9265905 | None:intergenic |
| CAATGGTCTTTAAGGTCAAC+CGG | 0.380775 | 1_2:+9266139 | None:intergenic |
| TTTCCCAACCTCTGAAGAAA+TGG | 0.384675 | 1_2:+9266642 | None:intergenic |
| GAATCAGACTTACTTTCCTT+TGG | 0.396516 | 1_2:+9266598 | None:intergenic |
| CCAACAACAAAGAGCTTGAA+TGG | 0.401945 | 1_2:-9266504 | Msa0054560:CDS |
| CTACCATTTGTTAATTCTGA+TGG | 0.405480 | 1_2:-9267243 | Msa0054560:exon |
| GGCCAGATTTCTTTCTTGAA+TGG | 0.411936 | 1_2:+9266963 | None:intergenic |
| GGAACGGAATAATGCACTTA+TGG | 0.418242 | 1_2:-9266872 | Msa0054560:CDS |
| CGAGAAAATGCTTTGGCCAA+TGG | 0.428561 | 1_2:-9266817 | Msa0054560:CDS |
| GTATCGATTTGTACCATGTT+TGG | 0.434696 | 1_2:+9266114 | None:intergenic |
| TTCCCAACCTCTGAAGAAAT+GGG | 0.437141 | 1_2:+9266643 | None:intergenic |
| GTTGATTCGGATTCAGTCGC+TGG | 0.437150 | 1_2:-9267522 | Msa0054560:five_prime_UTR |
| AGGTTTCCAATCAGCCTTTG+AGG | 0.441798 | 1_2:+9266426 | None:intergenic |
| TATACATCACCTTCCGCAAC+AGG | 0.447735 | 1_2:-9266743 | Msa0054560:CDS |
| AATCACCCATATTAGGCAAA+TGG | 0.448313 | 1_2:+9266716 | None:intergenic |
| TTGTACCATGTTTGGCCCAA+TGG | 0.454297 | 1_2:+9266122 | None:intergenic |
| ATAATTAGGATCCAAGGAAA+TGG | 0.454358 | 1_2:-9265947 | Msa0054560:three_prime_UTR |
| TAGCAGCCTCAAAGGCTGAT+TGG | 0.454649 | 1_2:-9266432 | Msa0054560:CDS |
| AATATGGGTGATTCTTCTTA+CGG | 0.455899 | 1_2:-9266706 | Msa0054560:CDS |
| AGATCAATATAAATCTGCTC+AGG | 0.457509 | 1_2:-9267192 | Msa0054560:CDS |
| TTCTGAGACAGTGCTACAAA+TGG | 0.466001 | 1_2:-9266330 | Msa0054560:CDS |
| TCGTGTTTCTCACTTGGGTA+TGG | 0.467764 | 1_2:+9269399 | None:intergenic |
| GTACAAGAGCATGCTGGTGC+TGG | 0.473862 | 1_2:+9266358 | None:intergenic |
| GCACCAGCATGCTCTTGTAC+TGG | 0.474798 | 1_2:-9266355 | Msa0054560:CDS |
| CGGTTGACCTTAAAGACCAT+TGG | 0.478594 | 1_2:-9266138 | Msa0054560:CDS |
| TCTGAGACAGTGCTACAAAT+GGG | 0.478630 | 1_2:-9266329 | Msa0054560:CDS |
| GTAAACCATTTGCCTAATAT+GGG | 0.479892 | 1_2:-9266721 | Msa0054560:CDS |
| TCTTAACCCTCTAGTTCAAA+GGG | 0.482472 | 1_2:-9268857 | Msa0054560:five_prime_UTR |
| CAGTGCTACAAATGGGGTAA+TGG | 0.484703 | 1_2:-9266322 | Msa0054560:CDS |
| TCAGTTTCGAGAAAATGCTT+TGG | 0.485734 | 1_2:-9266824 | Msa0054560:CDS |
| GTCTTAACCCTCTAGTTCAA+AGG | 0.489092 | 1_2:-9268858 | Msa0054560:five_prime_UTR |
| AGCCATTCAAGAAAGAAATC+TGG | 0.489436 | 1_2:-9266965 | Msa0054560:CDS |
| CCCCGTGAGATTTGACATCC+TGG | 0.492305 | 1_2:+9266775 | None:intergenic |
| TGATTGGAAACCTCAGGACT+TGG | 0.494236 | 1_2:-9266416 | Msa0054560:CDS |
| GGCAAATGGTTTACCTGTTG+CGG | 0.495581 | 1_2:+9266730 | None:intergenic |
| TTCCAGCTGTGCCCAACAAA+AGG | 0.495805 | 1_2:-9266252 | Msa0054560:CDS |
| GAAGCAAATTATGTCAATCA+TGG | 0.497300 | 1_2:-9267001 | Msa0054560:CDS |
| AGTTCAAAGGGAAGGTGAGC+TGG | 0.498029 | 1_2:-9268845 | Msa0054560:five_prime_UTR |
| CTTAGCCGGCTTGCAGCTGA+AGG | 0.500276 | 1_2:-9266178 | Msa0054560:CDS |
| CGTCCATCAGAATTAACAAA+TGG | 0.501557 | 1_2:+9267240 | None:intergenic |
| TTGAATCATCGTATGCAACT+TGG | 0.503216 | 1_2:+9266386 | None:intergenic |
| AGATAGGCAATACATGATCA+AGG | 0.503374 | 1_2:-9266056 | Msa0054560:three_prime_UTR |
| TCTTGTCGTGTTTCTCACTT+GGG | 0.503703 | 1_2:+9269394 | None:intergenic |
| GACATAATTTGCTTCATGGA+AGG | 0.504898 | 1_2:+9267009 | None:intergenic |
| ATATAAATCTGCTCAGGGAC+AGG | 0.509112 | 1_2:-9267186 | Msa0054560:intron |
| CTTTCAATAAACTACTTAGC+CGG | 0.514461 | 1_2:-9266192 | Msa0054560:CDS |
| TTTGGCCGTTTGGCACGCCT+AGG | 0.515774 | 1_2:+9266616 | None:intergenic |
| TTGTTGGGCACAGCTGGAAG+TGG | 0.517836 | 1_2:+9266256 | None:intergenic |
| GGTATGTCATCATGCCCTCC+AGG | 0.518820 | 1_2:-9266793 | Msa0054560:CDS |
| TTGATTGACCGAGTTGGATG+CGG | 0.521545 | 1_2:-9267301 | Msa0054560:five_prime_UTR |
| GGTTGACCTTAAAGACCATT+GGG | 0.521688 | 1_2:-9266137 | Msa0054560:CDS |
| CACCTTCCCTTTGAACTAGA+GGG | 0.524654 | 1_2:+9268851 | None:intergenic |
| GGCTTGATTAATACATCTTG+TGG | 0.531451 | 1_2:-9265848 | Msa0054560:three_prime_UTR |
| CAAGCAGTTAGCAGCCTCAA+AGG | 0.533010 | 1_2:-9266440 | Msa0054560:CDS |
| AAAGGCTGATTGGAAACCTC+AGG | 0.538629 | 1_2:-9266422 | Msa0054560:CDS |
| AACCACCTAGGCGTGCCAAA+CGG | 0.540428 | 1_2:-9266621 | Msa0054560:CDS |
| TGATTGACCGAGTTGGATGC+GGG | 0.542081 | 1_2:-9267300 | Msa0054560:five_prime_UTR |
| CAATTGCAGTATCTCGCTGC+AGG | 0.542654 | 1_2:+9266896 | None:intergenic |
| ACAAATGGGGTAATGGAGGT+TGG | 0.545815 | 1_2:-9266315 | Msa0054560:CDS |
| ATCTAGAAAAGTCAAGAAAG+AGG | 0.546447 | 1_2:-9266554 | Msa0054560:CDS |
| GGCCGTTTGGCACGCCTAGG+TGG | 0.547084 | 1_2:+9266619 | None:intergenic |
| ATTCCTATAATTAGGATCCA+AGG | 0.551896 | 1_2:-9265953 | Msa0054560:three_prime_UTR |
| TCCAGGATGTCAAATCTCAC+GGG | 0.552910 | 1_2:-9266776 | Msa0054560:CDS |
| CAAGATTCAACTAAAGTACA+AGG | 0.554025 | 1_2:+9265800 | None:intergenic |
| ACATGATCAAGGGTCAGCTA+TGG | 0.554160 | 1_2:-9266045 | Msa0054560:three_prime_UTR |
| TCACCTTCCCTTTGAACTAG+AGG | 0.558387 | 1_2:+9268850 | None:intergenic |
| AGAAGCTTACGAAAAGTGAA+AGG | 0.560219 | 1_2:+9269260 | None:intergenic |
| CTCCAGGATGTCAAATCTCA+CGG | 0.563255 | 1_2:-9266777 | Msa0054560:CDS |
| TTGATTCGGATTCAGTCGCT+GGG | 0.566827 | 1_2:-9267521 | Msa0054560:five_prime_UTR |
| GCATGATGACATACCACCAT+TGG | 0.567052 | 1_2:+9266801 | None:intergenic |
| TATTGCTTGATTGACCGAGT+TGG | 0.567676 | 1_2:-9267307 | Msa0054560:five_prime_UTR |
| TCCTAATCCCGCATCCAACT+CGG | 0.576248 | 1_2:+9267293 | None:intergenic |
| TTGATTAATACATCTTGTGG+TGG | 0.577501 | 1_2:-9265845 | Msa0054560:three_prime_UTR |
| CAATGTAAAACATATGTCAC+CGG | 0.578180 | 1_2:-9265924 | Msa0054560:three_prime_UTR |
| TGAGCTGGTAATCCAGACTT+CGG | 0.578327 | 1_2:-9268830 | Msa0054560:five_prime_UTR |
| AACCCTCTAGTTCAAAGGGA+AGG | 0.582967 | 1_2:-9268853 | Msa0054560:five_prime_UTR |
| TTTGCTTCATGGAAGGATGC+TGG | 0.583298 | 1_2:+9267016 | None:intergenic |
| CATACCATGCTTGTACATAG+AGG | 0.592266 | 1_2:+9267491 | None:intergenic |
| TGGTTCAATGCCAAGTCCTG+AGG | 0.592965 | 1_2:+9266406 | None:intergenic |
| AGAGCATGCTGGTGCTGGCA+TGG | 0.596415 | 1_2:+9266363 | None:intergenic |
| CCCAACCTCTGAAGAAATGG+GGG | 0.597363 | 1_2:+9266645 | None:intergenic |
| GCTTGAATGGAAGAGTAGTG+AGG | 0.599481 | 1_2:-9266491 | Msa0054560:CDS |
| AAAAGGCATGCTCGAGTAGG+TGG | 0.599819 | 1_2:-9266235 | Msa0054560:CDS |
| TAGGCGTGCCAAACGGCCAA+AGG | 0.600212 | 1_2:-9266614 | Msa0054560:CDS |
| CATGCCCTTCAGCTGCAAGC+CGG | 0.601437 | 1_2:+9266173 | None:intergenic |
| AAAGACCATTGGGCCAAACA+TGG | 0.604624 | 1_2:-9266127 | Msa0054560:CDS |
| AAGTGGATATACCGATAAAG+TGG | 0.604637 | 1_2:+9266273 | None:intergenic |
| TCTAGAAAAGTCAAGAAAGA+GGG | 0.605111 | 1_2:-9266553 | Msa0054560:CDS |
| AATGGTTTACCTGTTGCGGA+AGG | 0.606017 | 1_2:+9266734 | None:intergenic |
| GAGATACTGCAATTGCGGAA+CGG | 0.606489 | 1_2:-9266888 | Msa0054560:CDS |
| TGCTACAAATGGGGTAATGG+AGG | 0.606890 | 1_2:-9266319 | Msa0054560:CDS |
| TCCCAACCTCTGAAGAAATG+GGG | 0.610433 | 1_2:+9266644 | None:intergenic |
| GATCAATATAAATCTGCTCA+GGG | 0.611740 | 1_2:-9267191 | Msa0054560:CDS |
| GCAGCGAGATACTGCAATTG+CGG | 0.613903 | 1_2:-9266893 | Msa0054560:CDS |
| GAAAATGCTTTGGCCAATGG+TGG | 0.615877 | 1_2:-9266814 | Msa0054560:CDS |
| CAGAGGTTGGGAAACCACCT+AGG | 0.616912 | 1_2:-9266633 | Msa0054560:CDS |
| AGCACTTGCAGAACGTGACA+TGG | 0.620297 | 1_2:-9266923 | Msa0054560:CDS |
| TGGACGATCGTGAAAATGGA+AGG | 0.626784 | 1_2:-9267223 | Msa0054560:CDS |
| TTAGCCGGCTTGCAGCTGAA+GGG | 0.630246 | 1_2:-9266177 | Msa0054560:CDS |
| GTTGGATGCGGGATTAGGAG+AGG | 0.635531 | 1_2:-9267289 | Msa0054560:five_prime_UTR |
| CTGAGACAGTGCTACAAATG+GGG | 0.642920 | 1_2:-9266328 | Msa0054560:CDS |
| AGGGCATGATCTCTCACACC+CGG | 0.643910 | 1_2:-9266158 | Msa0054560:CDS |
| ACACCAGTACAAGAGCATGC+TGG | 0.644328 | 1_2:+9266352 | None:intergenic |
| ATAGCCTCTATGTACAAGCA+TGG | 0.646465 | 1_2:-9267495 | Msa0054560:intron |
| GATAGGCAATACATGATCAA+GGG | 0.654247 | 1_2:-9266055 | Msa0054560:three_prime_UTR |
| GTGAGATTTGACATCCTGGA+GGG | 0.655568 | 1_2:+9266779 | None:intergenic |
| AACAAAAGGCATGCTCGAGT+AGG | 0.658830 | 1_2:-9266238 | Msa0054560:CDS |
| CCAGGATGTCAAATCTCACG+GGG | 0.670697 | 1_2:-9266775 | Msa0054560:CDS |
| AATGGTCTTTAAGGTCAACC+GGG | 0.672212 | 1_2:+9266140 | None:intergenic |
| ATGGATTCTAAAGTTGAACA+AGG | 0.676747 | 1_2:-9266026 | Msa0054560:three_prime_UTR |
| CGACAAGAAAACAACTACAG+AGG | 0.678678 | 1_2:-9269379 | Msa0054560:five_prime_UTR |
| TAATCCAGACTTCGGCTGCG+AGG | 0.686239 | 1_2:-9268822 | Msa0054560:intron |
| AAATGCGATTGCCACCACCA+CGG | 0.689345 | 1_2:+9265875 | None:intergenic |
| CGTGAGATTTGACATCCTGG+AGG | 0.739694 | 1_2:+9266778 | None:intergenic |
| GATTCTAAAGTTGAACAAGG+AGG | 0.751080 | 1_2:-9266023 | Msa0054560:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGGTATTATTTTTTT+TGG | - | chr1_2:9266270-9266289 | Msa0054560:CDS | 10.0% |
| !! | ATCTTAAATGAAAGAAAAAA+AGG | + | chr1_2:9267498-9267517 | None:intergenic | 15.0% |
| !! | AAAATGAATAATGTTCTTGT+TGG | + | chr1_2:9265833-9265852 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGATTTCGAAAAT+TGG | - | chr1_2:9266056-9266075 | Msa0054560:three_prime_UTR | 20.0% |
| !!! | TGTTTTTGATTTCGAAAATT+GGG | - | chr1_2:9266057-9266076 | Msa0054560:three_prime_UTR | 20.0% |
| !!! | TTTTTAGAATTGCTCTTTTT+AGG | - | chr1_2:9266255-9266274 | Msa0054560:CDS | 20.0% |
| !!! | ATTATTTTGTAGCTTATTAC+TGG | + | chr1_2:9266892-9266911 | None:intergenic | 20.0% |
| !! | AAACATTGCATAAATAAATG+AGG | + | chr1_2:9266985-9267004 | None:intergenic | 20.0% |
| !!! | AATTTTTTGAAGAGTTGATT+CGG | - | chr1_2:9267615-9267634 | Msa0054560:intron | 20.0% |
| ! | ACAGAGGTAAAAAAAAAAAG+CGG | - | chr1_2:9265787-9265806 | Msa0054560:three_prime_UTR | 25.0% |
| ! | AATAATGTTCTTGTTGGATT+TGG | + | chr1_2:9265827-9265846 | None:intergenic | 25.0% |
| !!! | GTTTTTGATTTCGAAAATTG+GGG | - | chr1_2:9266058-9266077 | Msa0054560:three_prime_UTR | 25.0% |
| ! | AACACTAACAAAGGAAAAAA+AGG | + | chr1_2:9266439-9266458 | None:intergenic | 25.0% |
| ! | TAAAACATGAACACTAACAA+AGG | + | chr1_2:9266448-9266467 | None:intergenic | 25.0% |
| ! | TTGTGAAATTGTTGCTATAT+TGG | + | chr1_2:9266576-9266595 | None:intergenic | 25.0% |
| ! | AAACATCAACAAACAAATTG+TGG | + | chr1_2:9266748-9266767 | None:intergenic | 25.0% |
| ! | CAATTACACAACACTTAAAA+GGG | + | chr1_2:9266932-9266951 | None:intergenic | 25.0% |
| ! | ATGATTAGGATAGCATAAAA+TGG | + | chr1_2:9267014-9267033 | None:intergenic | 25.0% |
| !! | TATGCTATCCTAATCATTTT+TGG | - | chr1_2:9267017-9267036 | Msa0054560:CDS | 25.0% |
| ! | TGTTTGATCCAAAAATGATT+AGG | + | chr1_2:9267028-9267047 | None:intergenic | 25.0% |
| !!! | AATCATTTTTGGATCAAACA+AGG | - | chr1_2:9267028-9267047 | Msa0054560:CDS | 25.0% |
| ! | AAAGTTCTGTTCAAACAATA+AGG | + | chr1_2:9267124-9267143 | None:intergenic | 25.0% |
| !! | TACAAAGTGTTATCAAATAG+CGG | + | chr1_2:9267268-9267287 | None:intergenic | 25.0% |
| ! | TTAGCAGTATTGTCAAATAT+CGG | + | chr1_2:9267359-9267378 | None:intergenic | 25.0% |
| ! | TCAGGGAAAATTACTAATTA+TGG | + | chr1_2:9267424-9267443 | None:intergenic | 25.0% |
| ! | TAGTTCCTTAATTGATATTC+AGG | - | chr1_2:9267807-9267826 | Msa0054560:intron | 25.0% |
| !!! | TTAAATTTATTTCTGAGCAG+AGG | + | chr1_2:9268003-9268022 | None:intergenic | 25.0% |
| !! | TTCTTGACTTTTCTAGATTT+TGG | + | chr1_2:9268594-9268613 | None:intergenic | 25.0% |
| !! | AATGTGTCATTCCTATAATT+AGG | - | chr1_2:9269189-9269208 | Msa0054560:intron | 25.0% |
| TGTCGAAATTGTGAAAATTG+CGG | - | chr1_2:9266117-9266136 | Msa0054560:CDS | 30.0% | |
| ! | ATTATCACCTTTTATGTGTG+TGG | - | chr1_2:9266477-9266496 | Msa0054560:CDS | 30.0% |
| ! | TTATCACCTTTTATGTGTGT+GGG | - | chr1_2:9266478-9266497 | Msa0054560:CDS | 30.0% |
| CAAACAAATTGTGGCAATAA+TGG | + | chr1_2:9266739-9266758 | None:intergenic | 30.0% | |
| ACTTTCTAATTGCTAAGACT+AGG | - | chr1_2:9266811-9266830 | Msa0054560:CDS | 30.0% | |
| CCAATTACACAACACTTAAA+AGG | + | chr1_2:9266933-9266952 | None:intergenic | 30.0% | |
| !! | CCTTTTAAGTGTTGTGTAAT+TGG | - | chr1_2:9266930-9266949 | Msa0054560:CDS | 30.0% |
| TGTTCAAACAATAAGGAAGA+GGG | + | chr1_2:9267117-9267136 | None:intergenic | 30.0% | |
| ! | TTTGAACAGAACTTTTTGCA+TGG | - | chr1_2:9267129-9267148 | Msa0054560:intron | 30.0% |
| TATTTGTCTCTGTCATTGTT+GGG | - | chr1_2:9267185-9267204 | Msa0054560:intron | 30.0% | |
| ! | AAATATCGGCTATAGATTAG+CGG | + | chr1_2:9267345-9267364 | None:intergenic | 30.0% |
| CAAAGGCAATTTGAAAATCA+GGG | + | chr1_2:9267441-9267460 | None:intergenic | 30.0% | |
| ACAAAGGCAATTTGAAAATC+AGG | + | chr1_2:9267442-9267461 | None:intergenic | 30.0% | |
| !! | ATTCGAGTTTTTATCATAGC+TGG | - | chr1_2:9267535-9267554 | Msa0054560:five_prime_UTR | 30.0% |
| ! | CAGAAAAATTTGATTCGAGT+TGG | + | chr1_2:9267588-9267607 | None:intergenic | 30.0% |
| ! | TCGAATCAAATTTTTCTGCA+GGG | - | chr1_2:9267590-9267609 | Msa0054560:intron | 30.0% |
| ACAACACTAACAAAGAATAG+AGG | + | chr1_2:9267702-9267721 | None:intergenic | 30.0% | |
| CTATTCTTTGTTAGTGTTGT+TGG | - | chr1_2:9267702-9267721 | Msa0054560:intron | 30.0% | |
| CAAGTCCTGAATATCAATTA+AGG | + | chr1_2:9267815-9267834 | None:intergenic | 30.0% | |
| ! | CTACCATTTGTTAATTCTGA+TGG | - | chr1_2:9267907-9267926 | Msa0054560:intron | 30.0% |
| AGATCAATATAAATCTGCTC+AGG | - | chr1_2:9267958-9267977 | Msa0054560:intron | 30.0% | |
| GATCAATATAAATCTGCTCA+GGG | - | chr1_2:9267959-9267978 | Msa0054560:intron | 30.0% | |
| !! | TCTAAAAATTGCTTTTGCAG+TGG | - | chr1_2:9268094-9268113 | Msa0054560:intron | 30.0% |
| !! | GATTGACATAATTTGCTTCA+TGG | + | chr1_2:9268148-9268167 | None:intergenic | 30.0% |
| GAAGCAAATTATGTCAATCA+TGG | - | chr1_2:9268149-9268168 | Msa0054560:intron | 30.0% | |
| GTAAACCATTTGCCTAATAT+GGG | - | chr1_2:9268429-9268448 | Msa0054560:intron | 30.0% | |
| TAAGAAGAATCACCCATATT+AGG | + | chr1_2:9268444-9268463 | None:intergenic | 30.0% | |
| AATATGGGTGATTCTTCTTA+CGG | - | chr1_2:9268444-9268463 | Msa0054560:intron | 30.0% | |
| ATCTAGAAAAGTCAAGAAAG+AGG | - | chr1_2:9268596-9268615 | Msa0054560:intron | 30.0% | |
| TCTAGAAAAGTCAAGAAAGA+GGG | - | chr1_2:9268597-9268616 | Msa0054560:intron | 30.0% | |
| AGTAGTGAGGAAATGATAAA+TGG | - | chr1_2:9268672-9268691 | Msa0054560:intron | 30.0% | |
| CTTTCAATAAACTACTTAGC+CGG | - | chr1_2:9268958-9268977 | Msa0054560:intron | 30.0% | |
| !! | ATGGATTCTAAAGTTGAACA+AGG | - | chr1_2:9269124-9269143 | Msa0054560:intron | 30.0% |
| ATTCCTATAATTAGGATCCA+AGG | - | chr1_2:9269197-9269216 | Msa0054560:intron | 30.0% | |
| TTTCCTTGGATCCTAATTAT+AGG | + | chr1_2:9269203-9269222 | None:intergenic | 30.0% | |
| ATAATTAGGATCCAAGGAAA+TGG | - | chr1_2:9269203-9269222 | Msa0054560:intron | 30.0% | |
| CAATGTAAAACATATGTCAC+CGG | - | chr1_2:9269226-9269245 | Msa0054560:intron | 30.0% | |
| TTGATTAATACATCTTGTGG+TGG | - | chr1_2:9269305-9269324 | Msa0054560:five_prime_UTR | 30.0% | |
| CAAGATTCAACTAAAGTACA+AGG | + | chr1_2:9269353-9269372 | None:intergenic | 30.0% | |
| !! | TATTCATTTTTCTGCTGCGA+AGG | - | chr1_2:9265843-9265862 | Msa0054560:three_prime_UTR | 35.0% |
| AGAAGCTTACGAAAAGTGAA+AGG | + | chr1_2:9265893-9265912 | None:intergenic | 35.0% | |
| TCGACAACAACAAAAACACA+CGG | + | chr1_2:9266103-9266122 | None:intergenic | 35.0% | |
| CTTTCAACTACAAAGTACGA+AGG | + | chr1_2:9266176-9266195 | None:intergenic | 35.0% | |
| ! | TCTTAACCCTCTAGTTCAAA+GGG | - | chr1_2:9266293-9266312 | Msa0054560:CDS | 35.0% |
| TTACAGCCATAATTCGAACT+CGG | - | chr1_2:9266375-9266394 | Msa0054560:CDS | 35.0% | |
| ACACCAATGTTGTTAACTAG+CGG | + | chr1_2:9266674-9266693 | None:intergenic | 35.0% | |
| CTAGTTAACAACATTGGTGT+GGG | - | chr1_2:9266674-9266693 | Msa0054560:CDS | 35.0% | |
| ! | GAAAGTTTTACACACAACGA+AGG | + | chr1_2:9266797-9266816 | None:intergenic | 35.0% |
| GGTAGTTAACTTATTGACCT+TGG | - | chr1_2:9266859-9266878 | Msa0054560:CDS | 35.0% | |
| GTTAACTTATTGACCTTGGA+TGG | - | chr1_2:9266863-9266882 | Msa0054560:CDS | 35.0% | |
| !! | TTATTACTGGTTTCCATCCA+AGG | + | chr1_2:9266879-9266898 | None:intergenic | 35.0% |
| GTTCAAACAATAAGGAAGAG+GGG | + | chr1_2:9267116-9267135 | None:intergenic | 35.0% | |
| CTGTTCAAACAATAAGGAAG+AGG | + | chr1_2:9267118-9267137 | None:intergenic | 35.0% | |
| CTATTTGTCTCTGTCATTGT+TGG | - | chr1_2:9267184-9267203 | Msa0054560:intron | 35.0% | |
| ATTTGTCTCTGTCATTGTTG+GGG | - | chr1_2:9267186-9267205 | Msa0054560:intron | 35.0% | |
| CTGTCAATCATGGAAAATAG+CGG | - | chr1_2:9267214-9267233 | Msa0054560:CDS | 35.0% | |
| !! | CGAGAATCAATCACTTTTGT+TGG | + | chr1_2:9267400-9267419 | None:intergenic | 35.0% |
| ! | CTCGAATCAAATTTTTCTGC+AGG | - | chr1_2:9267589-9267608 | Msa0054560:intron | 35.0% |
| AATAGAGGTGGAAAAGGTTA+TGG | + | chr1_2:9267687-9267706 | None:intergenic | 35.0% | |
| ACAAAGAATAGAGGTGGAAA+AGG | + | chr1_2:9267693-9267712 | None:intergenic | 35.0% | |
| ACACTAACAAAGAATAGAGG+TGG | + | chr1_2:9267699-9267718 | None:intergenic | 35.0% | |
| CGTCCATCAGAATTAACAAA+TGG | + | chr1_2:9267913-9267932 | None:intergenic | 35.0% | |
| ! | AAGTGCTGCATATACCTAAA+AGG | - | chr1_2:9268049-9268068 | Msa0054560:intron | 35.0% |
| AGTGCTGCATATACCTAAAA+GGG | - | chr1_2:9268050-9268069 | Msa0054560:intron | 35.0% | |
| !! | GACATAATTTGCTTCATGGA+AGG | + | chr1_2:9268144-9268163 | None:intergenic | 35.0% |
| AGCCATTCAAGAAAGAAATC+TGG | - | chr1_2:9268185-9268204 | Msa0054560:intron | 35.0% | |
| ! | AGCATTTTCTCGAAACTGAA+GGG | + | chr1_2:9268325-9268344 | None:intergenic | 35.0% |
| ! | AAGCATTTTCTCGAAACTGA+AGG | + | chr1_2:9268326-9268345 | None:intergenic | 35.0% |
| TCAGTTTCGAGAAAATGCTT+TGG | - | chr1_2:9268326-9268345 | Msa0054560:intron | 35.0% | |
| GGTAAACCATTTGCCTAATA+TGG | - | chr1_2:9268428-9268447 | Msa0054560:intron | 35.0% | |
| AATCACCCATATTAGGCAAA+TGG | + | chr1_2:9268437-9268456 | None:intergenic | 35.0% | |
| GAATCAGACTTACTTTCCTT+TGG | + | chr1_2:9268555-9268574 | None:intergenic | 35.0% | |
| !!! | GATTTTGGAGTCTTCTTGTT+AGG | + | chr1_2:9268579-9268598 | None:intergenic | 35.0% |
| TTGAATCATCGTATGCAACT+TGG | + | chr1_2:9268767-9268786 | None:intergenic | 35.0% | |
| TTGCTGTACAACCACTTTAT+CGG | - | chr1_2:9268866-9268885 | Msa0054560:five_prime_UTR | 35.0% | |
| AAGTGGATATACCGATAAAG+TGG | + | chr1_2:9268880-9268899 | None:intergenic | 35.0% | |
| !! | GTATCGATTTGTACCATGTT+TGG | + | chr1_2:9269039-9269058 | None:intergenic | 35.0% |
| TTGATCATGTATTGCCTATC+TGG | + | chr1_2:9269095-9269114 | None:intergenic | 35.0% | |
| AGATAGGCAATACATGATCA+AGG | - | chr1_2:9269094-9269113 | Msa0054560:intron | 35.0% | |
| GATAGGCAATACATGATCAA+GGG | - | chr1_2:9269095-9269114 | Msa0054560:intron | 35.0% | |
| !! | GATTCTAAAGTTGAACAAGG+AGG | - | chr1_2:9269127-9269146 | Msa0054560:intron | 35.0% |
| GTTGAACAAGGAGGAAAATA+AGG | - | chr1_2:9269136-9269155 | Msa0054560:intron | 35.0% | |
| !! | GTTTTACATTGCCATTTCCT+TGG | + | chr1_2:9269217-9269236 | None:intergenic | 35.0% |
| !! | ACCATTTTGACCTGCAAAAA+TGG | - | chr1_2:9269251-9269270 | Msa0054560:intron | 35.0% |
| !! | ACCATTTTTGCAGGTCAAAA+TGG | + | chr1_2:9269255-9269274 | None:intergenic | 35.0% |
| GGCTTGATTAATACATCTTG+TGG | - | chr1_2:9269302-9269321 | Msa0054560:five_prime_UTR | 35.0% | |
| TCTTGTCGTGTTTCTCACTT+GGG | + | chr1_2:9265759-9265778 | None:intergenic | 40.0% | |
| TTCTTGTCGTGTTTCTCACT+TGG | + | chr1_2:9265760-9265779 | None:intergenic | 40.0% | |
| CGACAAGAAAACAACTACAG+AGG | - | chr1_2:9265771-9265790 | Msa0054560:three_prime_UTR | 40.0% | |
| ! | TTTTTCTGCTGCGAAGGATT+AGG | - | chr1_2:9265849-9265868 | Msa0054560:three_prime_UTR | 40.0% |
| ! | TTTTCTGCTGCGAAGGATTA+GGG | - | chr1_2:9265850-9265869 | Msa0054560:three_prime_UTR | 40.0% |
| ! | GTCTTAACCCTCTAGTTCAA+AGG | - | chr1_2:9266292-9266311 | Msa0054560:CDS | 40.0% |
| TACAGCCATAATTCGAACTC+GGG | - | chr1_2:9266376-9266395 | Msa0054560:CDS | 40.0% | |
| TAGAACCCGAGTTCGAATTA+TGG | + | chr1_2:9266384-9266403 | None:intergenic | 40.0% | |
| TTGTTAACTAGCGGCAATAG+TGG | + | chr1_2:9266665-9266684 | None:intergenic | 40.0% | |
| TTGCCGCTAGTTAACAACAT+TGG | - | chr1_2:9266668-9266687 | Msa0054560:CDS | 40.0% | |
| GCTAGTTAACAACATTGGTG+TGG | - | chr1_2:9266673-9266692 | Msa0054560:CDS | 40.0% | |
| !!! | GAGACGAAGCTTGTTGTTTT+TGG | - | chr1_2:9266770-9266789 | Msa0054560:CDS | 40.0% |
| ! | CTATCACTGACTGACTGTTA+AGG | - | chr1_2:9266838-9266857 | Msa0054560:CDS | 40.0% |
| !! | TCACTTTTGTTGGAGCACAA+AGG | + | chr1_2:9267390-9267409 | None:intergenic | 40.0% |
| AGATAACCACTAACTGTGCA+CGG | + | chr1_2:9267467-9267486 | None:intergenic | 40.0% | |
| ATAGCCTCTATGTACAAGCA+TGG | - | chr1_2:9267655-9267674 | Msa0054560:intron | 40.0% | |
| CATACCATGCTTGTACATAG+AGG | + | chr1_2:9267662-9267681 | None:intergenic | 40.0% | |
| TATTGCTTGATTGACCGAGT+TGG | - | chr1_2:9267843-9267862 | Msa0054560:intron | 40.0% | |
| ATATAAATCTGCTCAGGGAC+AGG | - | chr1_2:9267964-9267983 | Msa0054560:intron | 40.0% | |
| !!! | AGTAGAGAAAGCACCCTTTT+AGG | + | chr1_2:9268066-9268085 | None:intergenic | 40.0% |
| GGCCAGATTTCTTTCTTGAA+TGG | + | chr1_2:9268190-9268209 | None:intergenic | 40.0% | |
| GGAACGGAATAATGCACTTA+TGG | - | chr1_2:9268278-9268297 | Msa0054560:intron | 40.0% | |
| ! | TTCCCAACCTCTGAAGAAAT+GGG | + | chr1_2:9268510-9268529 | None:intergenic | 40.0% |
| ! | TTTCCCAACCTCTGAAGAAA+TGG | + | chr1_2:9268511-9268530 | None:intergenic | 40.0% |
| ! | CCATTCAAGCTCTTTGTTGT+TGG | + | chr1_2:9268649-9268668 | None:intergenic | 40.0% |
| CCAACAACAAAGAGCTTGAA+TGG | - | chr1_2:9268646-9268665 | Msa0054560:intron | 40.0% | |
| !! | TTCTGAGACAGTGCTACAAA+TGG | - | chr1_2:9268820-9268839 | Msa0054560:intron | 40.0% |
| ! | TCTGAGACAGTGCTACAAAT+GGG | - | chr1_2:9268821-9268840 | Msa0054560:intron | 40.0% |
| GTAGGTGGTAGAAAAATGAG+TGG | - | chr1_2:9268930-9268949 | Msa0054560:intron | 40.0% | |
| !! | AATGGTCTTTAAGGTCAACC+GGG | + | chr1_2:9269013-9269032 | None:intergenic | 40.0% |
| !! | CAATGGTCTTTAAGGTCAAC+CGG | + | chr1_2:9269014-9269033 | None:intergenic | 40.0% |
| GGTTGACCTTAAAGACCATT+GGG | - | chr1_2:9269013-9269032 | Msa0054560:intron | 40.0% | |
| ! | CGATGCATTTTTCTCCAGAT+AGG | - | chr1_2:9269078-9269097 | Msa0054560:intron | 40.0% |
| TTGCAGGTCAAAATGGTTAC+CGG | + | chr1_2:9269248-9269267 | None:intergenic | 40.0% | |
| TGGTGGCAATCGCATTTAAT+AGG | - | chr1_2:9269281-9269300 | Msa0054560:five_prime_UTR | 40.0% | |
| TCGTGTTTCTCACTTGGGTA+TGG | + | chr1_2:9265754-9265773 | None:intergenic | 45.0% | |
| ! | AACCCTCTAGTTCAAAGGGA+AGG | - | chr1_2:9266297-9266316 | Msa0054560:CDS | 45.0% |
| CACCTTCCCTTTGAACTAGA+GGG | + | chr1_2:9266302-9266321 | None:intergenic | 45.0% | |
| TCACCTTCCCTTTGAACTAG+AGG | + | chr1_2:9266303-9266322 | None:intergenic | 45.0% | |
| TGAGCTGGTAATCCAGACTT+CGG | - | chr1_2:9266320-9266339 | Msa0054560:CDS | 45.0% | |
| CACTGACCCACACACATAAA+AGG | + | chr1_2:9266487-9266506 | None:intergenic | 45.0% | |
| TTAGAGCAATTGCGCTAGCA+GGG | + | chr1_2:9267063-9267082 | None:intergenic | 45.0% | |
| ATTAGAGCAATTGCGCTAGC+AGG | + | chr1_2:9267064-9267083 | None:intergenic | 45.0% | |
| GAATCTGAACAAAGCGCGAT+AGG | + | chr1_2:9267299-9267318 | None:intergenic | 45.0% | |
| !! | TTGATTCGGATTCAGTCGCT+GGG | - | chr1_2:9267629-9267648 | Msa0054560:intron | 45.0% |
| ! | TTGATTGACCGAGTTGGATG+CGG | - | chr1_2:9267849-9267868 | Msa0054560:intron | 45.0% |
| ! | CTGATGGACGATCGTGAAAA+TGG | - | chr1_2:9267923-9267942 | Msa0054560:intron | 45.0% |
| TGGACGATCGTGAAAATGGA+AGG | - | chr1_2:9267927-9267946 | Msa0054560:intron | 45.0% | |
| TTTGCTTCATGGAAGGATGC+TGG | + | chr1_2:9268137-9268156 | None:intergenic | 45.0% | |
| ! | TGCTGCCTTTTTCTCAGAGA+GGG | + | chr1_2:9268211-9268230 | None:intergenic | 45.0% |
| GAGATACTGCAATTGCGGAA+CGG | - | chr1_2:9268262-9268281 | Msa0054560:intron | 45.0% | |
| CGAGAAAATGCTTTGGCCAA+TGG | - | chr1_2:9268333-9268352 | Msa0054560:intron | 45.0% | |
| GAAAATGCTTTGGCCAATGG+TGG | - | chr1_2:9268336-9268355 | Msa0054560:intron | 45.0% | |
| GCATGATGACATACCACCAT+TGG | + | chr1_2:9268352-9268371 | None:intergenic | 45.0% | |
| GTGAGATTTGACATCCTGGA+GGG | + | chr1_2:9268374-9268393 | None:intergenic | 45.0% | |
| CTCCAGGATGTCAAATCTCA+CGG | - | chr1_2:9268373-9268392 | Msa0054560:intron | 45.0% | |
| TCCAGGATGTCAAATCTCAC+GGG | - | chr1_2:9268374-9268393 | Msa0054560:intron | 45.0% | |
| TATACATCACCTTCCGCAAC+AGG | - | chr1_2:9268407-9268426 | Msa0054560:intron | 45.0% | |
| AATGGTTTACCTGTTGCGGA+AGG | + | chr1_2:9268419-9268438 | None:intergenic | 45.0% | |
| GGCAAATGGTTTACCTGTTG+CGG | + | chr1_2:9268423-9268442 | None:intergenic | 45.0% | |
| ! | TCCCAACCTCTGAAGAAATG+GGG | + | chr1_2:9268509-9268528 | None:intergenic | 45.0% |
| CTTACTTTCCTTTGGCCGTT+TGG | + | chr1_2:9268547-9268566 | None:intergenic | 45.0% | |
| GCTTGAATGGAAGAGTAGTG+AGG | - | chr1_2:9268659-9268678 | Msa0054560:intron | 45.0% | |
| AGGTTTCCAATCAGCCTTTG+AGG | + | chr1_2:9268727-9268746 | None:intergenic | 45.0% | |
| AAAGGCTGATTGGAAACCTC+AGG | - | chr1_2:9268728-9268747 | Msa0054560:intron | 45.0% | |
| TGATTGGAAACCTCAGGACT+TGG | - | chr1_2:9268734-9268753 | Msa0054560:intron | 45.0% | |
| CTGAGACAGTGCTACAAATG+GGG | - | chr1_2:9268822-9268841 | Msa0054560:intron | 45.0% | |
| CAGTGCTACAAATGGGGTAA+TGG | - | chr1_2:9268828-9268847 | Msa0054560:five_prime_UTR | 45.0% | |
| ! | TGCTACAAATGGGGTAATGG+AGG | - | chr1_2:9268831-9268850 | Msa0054560:five_prime_UTR | 45.0% |
| !! | ACAAATGGGGTAATGGAGGT+TGG | - | chr1_2:9268835-9268854 | Msa0054560:five_prime_UTR | 45.0% |
| ! | ACTCGAGCATGCCTTTTGTT+GGG | + | chr1_2:9268912-9268931 | None:intergenic | 45.0% |
| ! | TACTCGAGCATGCCTTTTGT+TGG | + | chr1_2:9268913-9268932 | None:intergenic | 45.0% |
| ! | AACAAAAGGCATGCTCGAGT+AGG | - | chr1_2:9268912-9268931 | Msa0054560:intron | 45.0% |
| CGGTTGACCTTAAAGACCAT+TGG | - | chr1_2:9269012-9269031 | Msa0054560:intron | 45.0% | |
| GTTTGGCCCAATGGTCTTTA+AGG | + | chr1_2:9269022-9269041 | None:intergenic | 45.0% | |
| AAAGACCATTGGGCCAAACA+TGG | - | chr1_2:9269023-9269042 | Msa0054560:intron | 45.0% | |
| TTGTACCATGTTTGGCCCAA+TGG | + | chr1_2:9269031-9269050 | None:intergenic | 45.0% | |
| ACATGATCAAGGGTCAGCTA+TGG | - | chr1_2:9269105-9269124 | Msa0054560:intron | 45.0% | |
| AGTTCAAAGGGAAGGTGAGC+TGG | - | chr1_2:9266305-9266324 | Msa0054560:CDS | 50.0% | |
| TGGGGCAATGCTGTCAATCA+TGG | - | chr1_2:9267204-9267223 | Msa0054560:CDS | 50.0% | |
| CTAACTGTGCACGGAGACAA+AGG | + | chr1_2:9267458-9267477 | None:intergenic | 50.0% | |
| TTGTCTCCGTGCACAGTTAG+TGG | - | chr1_2:9267458-9267477 | Msa0054560:intron | 50.0% | |
| !! | GTTGATTCGGATTCAGTCGC+TGG | - | chr1_2:9267628-9267647 | Msa0054560:intron | 50.0% |
| ACAAATTTCCTCCACCCTCC+AGG | - | chr1_2:9267728-9267747 | Msa0054560:intron | 50.0% | |
| CTTTCCTCCTGTGTTCCTTG+AGG | + | chr1_2:9267754-9267773 | None:intergenic | 50.0% | |
| ! | TGATTGACCGAGTTGGATGC+GGG | - | chr1_2:9267850-9267869 | Msa0054560:intron | 50.0% |
| TCCTAATCCCGCATCCAACT+CGG | + | chr1_2:9267860-9267879 | None:intergenic | 50.0% | |
| ! | TCTGGCCCTCTCTGAGAAAA+AGG | - | chr1_2:9268203-9268222 | Msa0054560:intron | 50.0% |
| ! | GTGCTGCCTTTTTCTCAGAG+AGG | + | chr1_2:9268212-9268231 | None:intergenic | 50.0% |
| AGCACTTGCAGAACGTGACA+TGG | - | chr1_2:9268227-9268246 | Msa0054560:intron | 50.0% | |
| CAATTGCAGTATCTCGCTGC+AGG | + | chr1_2:9268257-9268276 | None:intergenic | 50.0% | |
| GCAGCGAGATACTGCAATTG+CGG | - | chr1_2:9268257-9268276 | Msa0054560:intron | 50.0% | |
| CGTGAGATTTGACATCCTGG+AGG | + | chr1_2:9268375-9268394 | None:intergenic | 50.0% | |
| CCAGGATGTCAAATCTCACG+GGG | - | chr1_2:9268375-9268394 | Msa0054560:intron | 50.0% | |
| ! | CCCAACCTCTGAAGAAATGG+GGG | + | chr1_2:9268508-9268527 | None:intergenic | 50.0% |
| CCCCCATTTCTTCAGAGGTT+GGG | - | chr1_2:9268505-9268524 | Msa0054560:intron | 50.0% | |
| CAAGCAGTTAGCAGCCTCAA+AGG | - | chr1_2:9268710-9268729 | Msa0054560:intron | 50.0% | |
| TAGCAGCCTCAAAGGCTGAT+TGG | - | chr1_2:9268718-9268737 | Msa0054560:intron | 50.0% | |
| TGGTTCAATGCCAAGTCCTG+AGG | + | chr1_2:9268747-9268766 | None:intergenic | 50.0% | |
| ! | ACACCAGTACAAGAGCATGC+TGG | + | chr1_2:9268801-9268820 | None:intergenic | 50.0% |
| TTCCAGCTGTGCCCAACAAA+AGG | - | chr1_2:9268898-9268917 | Msa0054560:intron | 50.0% | |
| ! | AAAAGGCATGCTCGAGTAGG+TGG | - | chr1_2:9268915-9268934 | Msa0054560:intron | 50.0% |
| TGACCTGCAAAAATGGTCCG+TGG | - | chr1_2:9269258-9269277 | Msa0054560:intron | 50.0% | |
| AAATGCGATTGCCACCACCA+CGG | + | chr1_2:9269278-9269297 | None:intergenic | 50.0% | |
| TAATCCAGACTTCGGCTGCG+AGG | - | chr1_2:9266328-9266347 | Msa0054560:CDS | 55.0% | |
| AATTGCGCTAGCAGGGCAAG+GGG | + | chr1_2:9267056-9267075 | None:intergenic | 55.0% | |
| CAATTGCGCTAGCAGGGCAA+GGG | + | chr1_2:9267057-9267076 | None:intergenic | 55.0% | |
| TGTGTTCCTTGAGGCCTGGA+GGG | + | chr1_2:9267745-9267764 | None:intergenic | 55.0% | |
| ! | ACCGAGTTGGATGCGGGATT+AGG | - | chr1_2:9267856-9267875 | Msa0054560:intron | 55.0% |
| GTTGGATGCGGGATTAGGAG+AGG | - | chr1_2:9267861-9267880 | Msa0054560:intron | 55.0% | |
| GGTATGTCATCATGCCCTCC+AGG | - | chr1_2:9268357-9268376 | Msa0054560:intron | 55.0% | |
| CCCCGTGAGATTTGACATCC+TGG | + | chr1_2:9268378-9268397 | None:intergenic | 55.0% | |
| CTGAAGAAATGGGGGCTGCT+GGG | + | chr1_2:9268500-9268519 | None:intergenic | 55.0% | |
| TCTGAAGAAATGGGGGCTGC+TGG | + | chr1_2:9268501-9268520 | None:intergenic | 55.0% | |
| AGCAGCCCCCATTTCTTCAG+AGG | - | chr1_2:9268500-9268519 | Msa0054560:intron | 55.0% | |
| GCCCCCATTTCTTCAGAGGT+TGG | - | chr1_2:9268504-9268523 | Msa0054560:intron | 55.0% | |
| CAGAGGTTGGGAAACCACCT+AGG | - | chr1_2:9268517-9268536 | Msa0054560:intron | 55.0% | |
| AACCACCTAGGCGTGCCAAA+CGG | - | chr1_2:9268529-9268548 | Msa0054560:intron | 55.0% | |
| ! | GTACAAGAGCATGCTGGTGC+TGG | + | chr1_2:9268795-9268814 | None:intergenic | 55.0% |
| GCACCAGCATGCTCTTGTAC+TGG | - | chr1_2:9268795-9268814 | Msa0054560:intron | 55.0% | |
| TTGTTGGGCACAGCTGGAAG+TGG | + | chr1_2:9268897-9268916 | None:intergenic | 55.0% | |
| ! | TGCCTTTTGTTGGGCACAGC+TGG | + | chr1_2:9268903-9268922 | None:intergenic | 55.0% |
| !! | TTAGCCGGCTTGCAGCTGAA+GGG | - | chr1_2:9268973-9268992 | Msa0054560:intron | 55.0% |
| AGGGCATGATCTCTCACACC+CGG | - | chr1_2:9268992-9269011 | Msa0054560:intron | 55.0% | |
| !! | CCACCACGGACCATTTTTGC+AGG | + | chr1_2:9269264-9269283 | None:intergenic | 55.0% |
| CCTGCAAAAATGGTCCGTGG+TGG | - | chr1_2:9269261-9269280 | Msa0054560:intron | 55.0% | |
| GCAAAAATGGTCCGTGGTGG+TGG | - | chr1_2:9269264-9269283 | Msa0054560:intron | 55.0% | |
| CTAACCTCGCAGCCGAAGTC+TGG | + | chr1_2:9266335-9266354 | None:intergenic | 60.0% | |
| GCAATTGCGCTAGCAGGGCA+AGG | + | chr1_2:9267058-9267077 | None:intergenic | 60.0% | |
| CTGTGTTCCTTGAGGCCTGG+AGG | + | chr1_2:9267746-9267765 | None:intergenic | 60.0% | |
| CTCCAGGCCTCAAGGAACAC+AGG | - | chr1_2:9267744-9267763 | Msa0054560:intron | 60.0% | |
| CTCCTGTGTTCCTTGAGGCC+TGG | + | chr1_2:9267749-9267768 | None:intergenic | 60.0% | |
| CAGGCCTCAAGGAACACAGG+AGG | - | chr1_2:9267747-9267766 | Msa0054560:intron | 60.0% | |
| AGAAATGGGGGCTGCTGGGA+GGG | + | chr1_2:9268496-9268515 | None:intergenic | 60.0% | |
| AAGAAATGGGGGCTGCTGGG+AGG | + | chr1_2:9268497-9268516 | None:intergenic | 60.0% | |
| TTTGGCCGTTTGGCACGCCT+AGG | + | chr1_2:9268537-9268556 | None:intergenic | 60.0% | |
| TAGGCGTGCCAAACGGCCAA+AGG | - | chr1_2:9268536-9268555 | Msa0054560:intron | 60.0% | |
| !! | AGAGCATGCTGGTGCTGGCA+TGG | + | chr1_2:9268790-9268809 | None:intergenic | 60.0% |
| !! | CTTAGCCGGCTTGCAGCTGA+AGG | - | chr1_2:9268972-9268991 | Msa0054560:intron | 60.0% |
| CATGCCCTTCAGCTGCAAGC+CGG | + | chr1_2:9268980-9268999 | None:intergenic | 60.0% | |
| GTTCCTTGAGGCCTGGAGGG+TGG | + | chr1_2:9267742-9267761 | None:intergenic | 65.0% | |
| CCTTGAGGCCTGGAGGGTGG+AGG | + | chr1_2:9267739-9267758 | None:intergenic | 70.0% | |
| CCTCCACCCTCCAGGCCTCA+AGG | - | chr1_2:9267736-9267755 | Msa0054560:intron | 70.0% | |
| GGCCGTTTGGCACGCCTAGG+TGG | + | chr1_2:9268534-9268553 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9265723 | 9269449 | 9265723 | ID=Msa0054560;Name=Msa0054560 |
| chr1_2 | mRNA | 9265723 | 9269449 | 9265723 | ID=Msa0054560-mRNA-1;Parent=Msa0054560;Name=Msa0054560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=416|1|1|1|0.25|0.2|5|376|339 |
| chr1_2 | exon | 9265723 | 9267058 | 9265723 | ID=Msa0054560-mRNA-1:exon:3412;Parent=Msa0054560-mRNA-1 |
| chr1_2 | exon | 9267187 | 9267343 | 9267187 | ID=Msa0054560-mRNA-1:exon:3411;Parent=Msa0054560-mRNA-1 |
| chr1_2 | exon | 9267496 | 9267561 | 9267496 | ID=Msa0054560-mRNA-1:exon:3410;Parent=Msa0054560-mRNA-1 |
| chr1_2 | exon | 9268823 | 9268895 | 9268823 | ID=Msa0054560-mRNA-1:exon:3409;Parent=Msa0054560-mRNA-1 |
| chr1_2 | exon | 9269270 | 9269449 | 9269270 | ID=Msa0054560-mRNA-1:exon:3408;Parent=Msa0054560-mRNA-1 |
| chr1_2 | five_prime_UTR | 9269270 | 9269449 | 9269270 | ID=Msa0054560-mRNA-1:five_prime_utr;Parent=Msa0054560-mRNA-1 |
| chr1_2 | five_prime_UTR | 9268823 | 9268895 | 9268823 | ID=Msa0054560-mRNA-1:five_prime_utr;Parent=Msa0054560-mRNA-1 |
| chr1_2 | five_prime_UTR | 9267496 | 9267561 | 9267496 | ID=Msa0054560-mRNA-1:five_prime_utr;Parent=Msa0054560-mRNA-1 |
| chr1_2 | five_prime_UTR | 9267247 | 9267343 | 9267247 | ID=Msa0054560-mRNA-1:five_prime_utr;Parent=Msa0054560-mRNA-1 |
| chr1_2 | CDS | 9267187 | 9267246 | 9267187 | ID=Msa0054560-mRNA-1:cds;Parent=Msa0054560-mRNA-1 |
| chr1_2 | CDS | 9266099 | 9267058 | 9266099 | ID=Msa0054560-mRNA-1:cds;Parent=Msa0054560-mRNA-1 |
| chr1_2 | three_prime_UTR | 9265723 | 9266098 | 9265723 | ID=Msa0054560-mRNA-1:three_prime_utr;Parent=Msa0054560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
